Multiple sequence alignment - TraesCS7A01G510200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G510200 chr7A 100.000 6094 0 0 1 6094 697136753 697142846 0.000000e+00 11254
1 TraesCS7A01G510200 chr7A 99.010 3030 21 6 3066 6094 697255457 697258478 0.000000e+00 5421
2 TraesCS7A01G510200 chr7A 89.647 1700 139 24 3506 5178 697117025 697118714 0.000000e+00 2130
3 TraesCS7A01G510200 chr7A 84.351 1457 183 32 3795 5233 697012805 697014234 0.000000e+00 1386
4 TraesCS7A01G510200 chr7A 85.476 599 58 16 2601 3183 697116407 697116992 1.130000e-166 597
5 TraesCS7A01G510200 chr7A 81.677 775 84 25 1305 2067 697109128 697109856 5.260000e-165 592
6 TraesCS7A01G510200 chr7A 86.465 495 44 13 1090 1568 697057652 697058139 7.000000e-144 521
7 TraesCS7A01G510200 chr7A 80.372 591 68 36 1076 1654 697004804 697005358 7.350000e-109 405
8 TraesCS7A01G510200 chr7A 84.536 291 39 4 2899 3186 697012209 697012496 3.600000e-72 283
9 TraesCS7A01G510200 chr7A 92.308 195 14 1 1853 2047 697058293 697058486 6.020000e-70 276
10 TraesCS7A01G510200 chr7A 80.256 390 51 17 2118 2492 697113904 697114282 2.800000e-68 270
11 TraesCS7A01G510200 chr7A 83.624 287 30 11 2899 3183 697059291 697059562 2.820000e-63 254
12 TraesCS7A01G510200 chr7A 91.156 147 13 0 2172 2318 697058626 697058772 3.730000e-47 200
13 TraesCS7A01G510200 chr7A 85.629 167 15 2 596 753 78707325 78707159 3.780000e-37 167
14 TraesCS7A01G510200 chr7D 93.517 3733 158 38 2101 5795 605909455 605913141 0.000000e+00 5476
15 TraesCS7A01G510200 chr7D 89.604 1616 135 22 3586 5178 605866729 605868334 0.000000e+00 2023
16 TraesCS7A01G510200 chr7D 90.371 1402 80 27 747 2109 605907998 605909383 0.000000e+00 1790
17 TraesCS7A01G510200 chr7D 85.380 1368 148 33 3795 5140 605746472 605747809 0.000000e+00 1371
18 TraesCS7A01G510200 chr7D 86.333 600 62 13 2601 3183 605863294 605863890 2.400000e-178 636
19 TraesCS7A01G510200 chr7D 83.538 571 64 25 1024 1568 605830078 605830644 1.960000e-139 507
20 TraesCS7A01G510200 chr7D 84.980 506 47 14 3505 3999 605832175 605832662 2.550000e-133 486
21 TraesCS7A01G510200 chr7D 95.038 262 13 0 1305 1566 605860720 605860981 4.400000e-111 412
22 TraesCS7A01G510200 chr7D 89.752 322 19 5 5787 6094 605913585 605913906 3.420000e-107 399
23 TraesCS7A01G510200 chr7D 85.676 377 40 6 224 600 605907654 605908016 9.580000e-103 385
24 TraesCS7A01G510200 chr7D 81.509 411 54 14 2794 3186 605745720 605746126 9.860000e-83 318
25 TraesCS7A01G510200 chr7D 92.611 203 15 0 1853 2055 605830852 605831054 5.970000e-75 292
26 TraesCS7A01G510200 chr7D 92.347 196 15 0 1853 2048 605752386 605752581 4.650000e-71 279
27 TraesCS7A01G510200 chr7D 79.808 416 52 19 2115 2507 605862724 605863130 2.160000e-69 274
28 TraesCS7A01G510200 chr7D 93.919 148 9 0 2171 2318 605831177 605831324 2.210000e-54 224
29 TraesCS7A01G510200 chr7D 85.475 179 21 2 3328 3501 44648373 44648551 1.350000e-41 182
30 TraesCS7A01G510200 chr7D 91.111 90 7 1 3506 3594 605863923 605864012 2.980000e-23 121
31 TraesCS7A01G510200 chr7B 94.756 1964 75 14 3410 5349 690015283 690017242 0.000000e+00 3031
32 TraesCS7A01G510200 chr7B 87.581 1707 145 39 3505 5178 689925512 689927184 0.000000e+00 1916
33 TraesCS7A01G510200 chr7B 90.632 1313 80 21 2101 3376 690013972 690015278 0.000000e+00 1703
34 TraesCS7A01G510200 chr7B 89.208 1288 91 22 860 2109 690012622 690013899 0.000000e+00 1565
35 TraesCS7A01G510200 chr7B 83.893 1608 181 46 3593 5179 689967610 689969160 0.000000e+00 1463
36 TraesCS7A01G510200 chr7B 85.544 1342 149 28 3819 5140 689200334 689201650 0.000000e+00 1362
37 TraesCS7A01G510200 chr7B 87.163 927 79 15 5200 6094 690045441 690046359 0.000000e+00 1016
38 TraesCS7A01G510200 chr7B 86.778 779 70 15 5347 6094 690022614 690023390 0.000000e+00 837
39 TraesCS7A01G510200 chr7B 83.639 709 80 17 2499 3183 689924784 689925480 8.620000e-178 634
40 TraesCS7A01G510200 chr7B 83.741 572 61 17 1021 1568 689965383 689965946 4.210000e-141 512
41 TraesCS7A01G510200 chr7B 83.507 576 62 21 1024 1568 689903373 689903946 1.960000e-139 507
42 TraesCS7A01G510200 chr7B 85.563 471 36 13 3505 3963 689905470 689905920 1.200000e-126 464
43 TraesCS7A01G510200 chr7B 81.679 393 54 11 2796 3176 689199568 689199954 1.650000e-80 311
44 TraesCS7A01G510200 chr7B 93.367 196 12 1 1853 2048 689966072 689966266 7.730000e-74 289
45 TraesCS7A01G510200 chr7B 78.719 437 50 20 2763 3183 689905008 689905417 1.010000e-62 252
46 TraesCS7A01G510200 chr7B 81.212 330 42 16 2102 2423 689923932 689924249 1.310000e-61 248
47 TraesCS7A01G510200 chr7B 88.038 209 18 2 1853 2055 689904143 689904350 2.190000e-59 241
48 TraesCS7A01G510200 chr7B 93.919 148 9 0 2171 2318 689904479 689904626 2.210000e-54 224
49 TraesCS7A01G510200 chr7B 84.574 188 22 4 3323 3504 677124110 677123924 4.850000e-41 180
50 TraesCS7A01G510200 chr7B 86.624 157 18 3 602 757 538340123 538340277 2.920000e-38 171
51 TraesCS7A01G510200 chrUn 100.000 400 0 0 4068 4467 478791850 478792249 0.000000e+00 739
52 TraesCS7A01G510200 chrUn 86.145 166 14 2 601 757 411494207 411494372 2.920000e-38 171
53 TraesCS7A01G510200 chrUn 86.145 166 14 2 601 757 433044764 433044599 2.920000e-38 171
54 TraesCS7A01G510200 chr5B 88.889 180 15 2 3326 3500 625133366 625133187 3.700000e-52 217
55 TraesCS7A01G510200 chr6B 87.778 180 17 2 3326 3500 655773410 655773231 8.010000e-49 206
56 TraesCS7A01G510200 chr1B 95.041 121 5 1 2860 2980 7249433 7249314 8.060000e-44 189
57 TraesCS7A01G510200 chr1B 86.982 169 13 2 598 757 22976050 22975882 1.350000e-41 182
58 TraesCS7A01G510200 chr1D 85.635 181 20 3 3326 3500 298581071 298580891 1.040000e-42 185
59 TraesCS7A01G510200 chr1D 85.556 180 20 3 3326 3500 64420599 64420421 3.750000e-42 183
60 TraesCS7A01G510200 chr5D 84.615 182 22 3 3326 3501 536531154 536530973 6.280000e-40 176
61 TraesCS7A01G510200 chr6D 92.562 121 8 1 2860 2980 282609240 282609359 8.120000e-39 172
62 TraesCS7A01G510200 chr4B 86.228 167 14 2 601 758 453620308 453620474 8.120000e-39 172
63 TraesCS7A01G510200 chr4B 91.150 113 9 1 601 712 28074360 28074248 1.060000e-32 152
64 TraesCS7A01G510200 chr2A 84.524 168 17 2 600 758 595401918 595401751 2.270000e-34 158
65 TraesCS7A01G510200 chr2B 83.929 168 18 5 599 757 58834627 58834460 1.060000e-32 152


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G510200 chr7A 697136753 697142846 6093 False 11254.000000 11254 100.000000 1 6094 1 chr7A.!!$F3 6093
1 TraesCS7A01G510200 chr7A 697255457 697258478 3021 False 5421.000000 5421 99.010000 3066 6094 1 chr7A.!!$F4 3028
2 TraesCS7A01G510200 chr7A 697113904 697118714 4810 False 999.000000 2130 85.126333 2118 5178 3 chr7A.!!$F7 3060
3 TraesCS7A01G510200 chr7A 697012209 697014234 2025 False 834.500000 1386 84.443500 2899 5233 2 chr7A.!!$F5 2334
4 TraesCS7A01G510200 chr7A 697109128 697109856 728 False 592.000000 592 81.677000 1305 2067 1 chr7A.!!$F2 762
5 TraesCS7A01G510200 chr7A 697004804 697005358 554 False 405.000000 405 80.372000 1076 1654 1 chr7A.!!$F1 578
6 TraesCS7A01G510200 chr7A 697057652 697059562 1910 False 312.750000 521 88.388250 1090 3183 4 chr7A.!!$F6 2093
7 TraesCS7A01G510200 chr7D 605907654 605913906 6252 False 2012.500000 5476 89.829000 224 6094 4 chr7D.!!$F6 5870
8 TraesCS7A01G510200 chr7D 605745720 605747809 2089 False 844.500000 1371 83.444500 2794 5140 2 chr7D.!!$F3 2346
9 TraesCS7A01G510200 chr7D 605860720 605868334 7614 False 693.200000 2023 88.378800 1305 5178 5 chr7D.!!$F5 3873
10 TraesCS7A01G510200 chr7D 605830078 605832662 2584 False 377.250000 507 88.762000 1024 3999 4 chr7D.!!$F4 2975
11 TraesCS7A01G510200 chr7B 690012622 690017242 4620 False 2099.666667 3031 91.532000 860 5349 3 chr7B.!!$F8 4489
12 TraesCS7A01G510200 chr7B 690045441 690046359 918 False 1016.000000 1016 87.163000 5200 6094 1 chr7B.!!$F3 894
13 TraesCS7A01G510200 chr7B 689923932 689927184 3252 False 932.666667 1916 84.144000 2102 5178 3 chr7B.!!$F6 3076
14 TraesCS7A01G510200 chr7B 690022614 690023390 776 False 837.000000 837 86.778000 5347 6094 1 chr7B.!!$F2 747
15 TraesCS7A01G510200 chr7B 689199568 689201650 2082 False 836.500000 1362 83.611500 2796 5140 2 chr7B.!!$F4 2344
16 TraesCS7A01G510200 chr7B 689965383 689969160 3777 False 754.666667 1463 87.000333 1021 5179 3 chr7B.!!$F7 4158
17 TraesCS7A01G510200 chr7B 689903373 689905920 2547 False 337.600000 507 85.949200 1024 3963 5 chr7B.!!$F5 2939

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
620 621 0.031414 AGAGGTGGCGTTAGGGGTAT 60.031 55.000 0.00 0.00 0.00 2.73 F
869 870 0.524816 TCGAACGAGGTAGCGCATTC 60.525 55.000 11.47 0.00 33.86 2.67 F
976 977 1.028905 ATGCGAGCCAGAGACTAGTC 58.971 55.000 15.41 15.41 0.00 2.59 F
2263 3650 0.742281 CACCCATCCTGCAGTTCGAG 60.742 60.000 13.81 0.71 0.00 4.04 F
2472 4240 0.457509 CTACGTCTGCTGCAGAGTGG 60.458 60.000 31.10 25.08 41.46 4.00 F
2628 6454 0.881118 TGATGGCGCTTTTCTTCACC 59.119 50.000 7.64 0.00 0.00 4.02 F
4068 10935 4.817318 TGCAAAAAGAGGACCTGTTTTT 57.183 36.364 27.90 27.90 44.06 1.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1864 2766 0.529378 GCTTCGACTCCCCGTAGAAA 59.471 55.000 0.00 0.00 36.91 2.52 R
2169 3556 1.225855 TGCCAGCACTAGAAACAACG 58.774 50.000 0.00 0.00 0.00 4.10 R
2472 4240 1.442857 CAGAGCAGACACCGTCGAC 60.443 63.158 5.18 5.18 37.67 4.20 R
3864 10727 1.085893 TGGCTGTGTATGTGAATGCG 58.914 50.000 0.00 0.00 0.00 4.73 R
4069 10936 3.788227 TGCTTAGCAGAGGAGGAAAAA 57.212 42.857 1.39 0.00 33.32 1.94 R
4654 11555 3.446442 AGATGATGTTGCTCCCAAACT 57.554 42.857 0.00 0.00 31.68 2.66 R
5269 12194 4.374843 AGCTTTGCATTCATTATTCGCA 57.625 36.364 0.00 0.00 0.00 5.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 1.599047 ACCTTGGCATCCTCAGACG 59.401 57.895 0.00 0.00 0.00 4.18
19 20 0.904865 ACCTTGGCATCCTCAGACGA 60.905 55.000 0.00 0.00 0.00 4.20
20 21 0.250234 CCTTGGCATCCTCAGACGAA 59.750 55.000 0.00 0.00 0.00 3.85
21 22 1.363744 CTTGGCATCCTCAGACGAAC 58.636 55.000 0.00 0.00 0.00 3.95
22 23 0.976641 TTGGCATCCTCAGACGAACT 59.023 50.000 0.00 0.00 0.00 3.01
23 24 0.247460 TGGCATCCTCAGACGAACTG 59.753 55.000 7.75 7.75 46.97 3.16
24 25 0.460987 GGCATCCTCAGACGAACTGG 60.461 60.000 12.50 5.64 45.76 4.00
25 26 1.086634 GCATCCTCAGACGAACTGGC 61.087 60.000 12.50 5.94 45.76 4.85
26 27 0.460987 CATCCTCAGACGAACTGGCC 60.461 60.000 0.00 0.00 45.76 5.36
27 28 0.904865 ATCCTCAGACGAACTGGCCA 60.905 55.000 4.71 4.71 45.76 5.36
28 29 1.374758 CCTCAGACGAACTGGCCAC 60.375 63.158 0.00 0.00 45.76 5.01
29 30 1.374758 CTCAGACGAACTGGCCACC 60.375 63.158 0.00 0.00 45.76 4.61
30 31 2.738521 CAGACGAACTGGCCACCG 60.739 66.667 0.00 8.75 42.39 4.94
31 32 2.915659 AGACGAACTGGCCACCGA 60.916 61.111 20.21 0.00 0.00 4.69
32 33 2.737376 GACGAACTGGCCACCGAC 60.737 66.667 20.21 12.48 0.00 4.79
33 34 3.509137 GACGAACTGGCCACCGACA 62.509 63.158 20.21 0.00 0.00 4.35
34 35 2.047274 CGAACTGGCCACCGACAT 60.047 61.111 0.00 0.00 0.00 3.06
35 36 2.100631 CGAACTGGCCACCGACATC 61.101 63.158 0.00 0.00 0.00 3.06
36 37 1.003839 GAACTGGCCACCGACATCA 60.004 57.895 0.00 0.00 0.00 3.07
37 38 0.392998 GAACTGGCCACCGACATCAT 60.393 55.000 0.00 0.00 0.00 2.45
38 39 0.908910 AACTGGCCACCGACATCATA 59.091 50.000 0.00 0.00 0.00 2.15
39 40 0.908910 ACTGGCCACCGACATCATAA 59.091 50.000 0.00 0.00 0.00 1.90
40 41 1.299541 CTGGCCACCGACATCATAAC 58.700 55.000 0.00 0.00 0.00 1.89
41 42 0.615850 TGGCCACCGACATCATAACA 59.384 50.000 0.00 0.00 0.00 2.41
42 43 1.014352 GGCCACCGACATCATAACAC 58.986 55.000 0.00 0.00 0.00 3.32
43 44 0.650512 GCCACCGACATCATAACACG 59.349 55.000 0.00 0.00 0.00 4.49
44 45 0.650512 CCACCGACATCATAACACGC 59.349 55.000 0.00 0.00 0.00 5.34
45 46 0.297525 CACCGACATCATAACACGCG 59.702 55.000 3.53 3.53 0.00 6.01
46 47 0.171679 ACCGACATCATAACACGCGA 59.828 50.000 15.93 0.00 0.00 5.87
47 48 0.570734 CCGACATCATAACACGCGAC 59.429 55.000 15.93 0.00 0.00 5.19
48 49 0.570734 CGACATCATAACACGCGACC 59.429 55.000 15.93 0.00 0.00 4.79
49 50 0.570734 GACATCATAACACGCGACCG 59.429 55.000 15.93 2.72 41.14 4.79
50 51 1.272715 CATCATAACACGCGACCGC 59.727 57.895 15.93 4.06 38.22 5.68
51 52 1.881252 ATCATAACACGCGACCGCC 60.881 57.895 15.93 0.00 38.22 6.13
52 53 2.566057 ATCATAACACGCGACCGCCA 62.566 55.000 15.93 0.00 38.22 5.69
53 54 2.812178 ATAACACGCGACCGCCAC 60.812 61.111 15.93 0.00 38.22 5.01
65 66 4.263572 CGCCACCCCAACCACTCA 62.264 66.667 0.00 0.00 0.00 3.41
66 67 2.197324 GCCACCCCAACCACTCAA 59.803 61.111 0.00 0.00 0.00 3.02
67 68 2.200337 GCCACCCCAACCACTCAAC 61.200 63.158 0.00 0.00 0.00 3.18
68 69 1.896660 CCACCCCAACCACTCAACG 60.897 63.158 0.00 0.00 0.00 4.10
69 70 1.147376 CACCCCAACCACTCAACGA 59.853 57.895 0.00 0.00 0.00 3.85
70 71 1.147600 ACCCCAACCACTCAACGAC 59.852 57.895 0.00 0.00 0.00 4.34
71 72 1.147376 CCCCAACCACTCAACGACA 59.853 57.895 0.00 0.00 0.00 4.35
72 73 1.164041 CCCCAACCACTCAACGACAC 61.164 60.000 0.00 0.00 0.00 3.67
73 74 0.462937 CCCAACCACTCAACGACACA 60.463 55.000 0.00 0.00 0.00 3.72
74 75 0.655733 CCAACCACTCAACGACACAC 59.344 55.000 0.00 0.00 0.00 3.82
75 76 0.655733 CAACCACTCAACGACACACC 59.344 55.000 0.00 0.00 0.00 4.16
76 77 0.250793 AACCACTCAACGACACACCA 59.749 50.000 0.00 0.00 0.00 4.17
77 78 0.461339 ACCACTCAACGACACACCAC 60.461 55.000 0.00 0.00 0.00 4.16
78 79 1.157870 CCACTCAACGACACACCACC 61.158 60.000 0.00 0.00 0.00 4.61
79 80 0.179084 CACTCAACGACACACCACCT 60.179 55.000 0.00 0.00 0.00 4.00
80 81 0.539986 ACTCAACGACACACCACCTT 59.460 50.000 0.00 0.00 0.00 3.50
81 82 0.937304 CTCAACGACACACCACCTTG 59.063 55.000 0.00 0.00 0.00 3.61
82 83 0.537653 TCAACGACACACCACCTTGA 59.462 50.000 0.00 0.00 0.00 3.02
83 84 0.655733 CAACGACACACCACCTTGAC 59.344 55.000 0.00 0.00 0.00 3.18
84 85 0.539986 AACGACACACCACCTTGACT 59.460 50.000 0.00 0.00 0.00 3.41
85 86 0.179084 ACGACACACCACCTTGACTG 60.179 55.000 0.00 0.00 0.00 3.51
86 87 0.880278 CGACACACCACCTTGACTGG 60.880 60.000 0.00 0.00 34.62 4.00
87 88 0.468226 GACACACCACCTTGACTGGA 59.532 55.000 0.00 0.00 32.55 3.86
88 89 0.180406 ACACACCACCTTGACTGGAC 59.820 55.000 0.00 0.00 32.55 4.02
89 90 0.180171 CACACCACCTTGACTGGACA 59.820 55.000 0.00 0.00 32.55 4.02
90 91 0.469917 ACACCACCTTGACTGGACAG 59.530 55.000 0.00 0.00 32.55 3.51
91 92 0.758734 CACCACCTTGACTGGACAGA 59.241 55.000 6.29 0.00 32.55 3.41
92 93 1.051812 ACCACCTTGACTGGACAGAG 58.948 55.000 6.29 0.00 32.55 3.35
93 94 1.342074 CCACCTTGACTGGACAGAGA 58.658 55.000 6.29 0.00 0.00 3.10
94 95 1.274728 CCACCTTGACTGGACAGAGAG 59.725 57.143 6.29 1.12 0.00 3.20
95 96 1.274728 CACCTTGACTGGACAGAGAGG 59.725 57.143 6.29 11.40 34.23 3.69
96 97 1.148027 ACCTTGACTGGACAGAGAGGA 59.852 52.381 19.28 0.00 33.20 3.71
97 98 2.251818 CCTTGACTGGACAGAGAGGAA 58.748 52.381 6.29 0.00 31.78 3.36
98 99 2.836981 CCTTGACTGGACAGAGAGGAAT 59.163 50.000 6.29 0.00 31.78 3.01
99 100 3.369261 CCTTGACTGGACAGAGAGGAATG 60.369 52.174 6.29 0.00 31.78 2.67
100 101 3.175438 TGACTGGACAGAGAGGAATGA 57.825 47.619 6.29 0.00 0.00 2.57
101 102 3.095332 TGACTGGACAGAGAGGAATGAG 58.905 50.000 6.29 0.00 0.00 2.90
102 103 3.245407 TGACTGGACAGAGAGGAATGAGA 60.245 47.826 6.29 0.00 0.00 3.27
103 104 3.766591 GACTGGACAGAGAGGAATGAGAA 59.233 47.826 6.29 0.00 0.00 2.87
104 105 3.513515 ACTGGACAGAGAGGAATGAGAAC 59.486 47.826 6.29 0.00 0.00 3.01
105 106 3.510459 TGGACAGAGAGGAATGAGAACA 58.490 45.455 0.00 0.00 0.00 3.18
106 107 3.259374 TGGACAGAGAGGAATGAGAACAC 59.741 47.826 0.00 0.00 0.00 3.32
107 108 3.506810 GACAGAGAGGAATGAGAACACG 58.493 50.000 0.00 0.00 0.00 4.49
108 109 2.266554 CAGAGAGGAATGAGAACACGC 58.733 52.381 0.00 0.00 0.00 5.34
109 110 1.135257 AGAGAGGAATGAGAACACGCG 60.135 52.381 3.53 3.53 0.00 6.01
110 111 0.603569 AGAGGAATGAGAACACGCGT 59.396 50.000 5.58 5.58 0.00 6.01
111 112 0.716108 GAGGAATGAGAACACGCGTG 59.284 55.000 35.99 35.99 0.00 5.34
112 113 0.317160 AGGAATGAGAACACGCGTGA 59.683 50.000 42.94 22.76 0.00 4.35
113 114 0.716108 GGAATGAGAACACGCGTGAG 59.284 55.000 42.94 20.80 0.00 3.51
114 115 0.716108 GAATGAGAACACGCGTGAGG 59.284 55.000 42.94 20.00 0.00 3.86
123 124 4.924019 CGCGTGAGGGGTTATCAA 57.076 55.556 0.00 0.00 40.85 2.57
124 125 2.380081 CGCGTGAGGGGTTATCAAC 58.620 57.895 0.00 0.00 40.85 3.18
134 135 2.311124 GGTTATCAACCCTCGACAGG 57.689 55.000 0.00 0.00 46.12 4.00
143 144 2.058675 CCTCGACAGGGGACAAAGT 58.941 57.895 0.00 0.00 41.93 2.66
144 145 0.037232 CCTCGACAGGGGACAAAGTC 60.037 60.000 0.00 0.00 41.93 3.01
154 155 2.341452 GACAAAGTCCAACCCCTGC 58.659 57.895 0.00 0.00 0.00 4.85
155 156 0.467290 GACAAAGTCCAACCCCTGCA 60.467 55.000 0.00 0.00 0.00 4.41
156 157 0.755327 ACAAAGTCCAACCCCTGCAC 60.755 55.000 0.00 0.00 0.00 4.57
157 158 0.468029 CAAAGTCCAACCCCTGCACT 60.468 55.000 0.00 0.00 0.00 4.40
158 159 1.145571 AAAGTCCAACCCCTGCACTA 58.854 50.000 0.00 0.00 0.00 2.74
159 160 0.693049 AAGTCCAACCCCTGCACTAG 59.307 55.000 0.00 0.00 0.00 2.57
160 161 0.473886 AGTCCAACCCCTGCACTAGT 60.474 55.000 0.00 0.00 0.00 2.57
161 162 1.203262 AGTCCAACCCCTGCACTAGTA 60.203 52.381 0.00 0.00 0.00 1.82
162 163 1.207329 GTCCAACCCCTGCACTAGTAG 59.793 57.143 0.00 0.00 0.00 2.57
163 164 0.107654 CCAACCCCTGCACTAGTAGC 60.108 60.000 0.00 2.56 0.00 3.58
164 165 0.107654 CAACCCCTGCACTAGTAGCC 60.108 60.000 12.71 0.00 0.00 3.93
165 166 0.546747 AACCCCTGCACTAGTAGCCA 60.547 55.000 12.71 3.22 0.00 4.75
166 167 0.546747 ACCCCTGCACTAGTAGCCAA 60.547 55.000 12.71 0.00 0.00 4.52
167 168 0.107654 CCCCTGCACTAGTAGCCAAC 60.108 60.000 12.71 0.00 0.00 3.77
168 169 0.613260 CCCTGCACTAGTAGCCAACA 59.387 55.000 12.71 0.00 0.00 3.33
169 170 1.676014 CCCTGCACTAGTAGCCAACAC 60.676 57.143 12.71 0.00 0.00 3.32
170 171 1.001974 CCTGCACTAGTAGCCAACACA 59.998 52.381 12.71 0.00 0.00 3.72
171 172 2.069273 CTGCACTAGTAGCCAACACAC 58.931 52.381 12.71 0.00 0.00 3.82
172 173 1.068474 GCACTAGTAGCCAACACACG 58.932 55.000 0.00 0.00 0.00 4.49
173 174 1.604693 GCACTAGTAGCCAACACACGT 60.605 52.381 0.00 0.00 0.00 4.49
174 175 2.325761 CACTAGTAGCCAACACACGTC 58.674 52.381 0.00 0.00 0.00 4.34
175 176 1.068748 ACTAGTAGCCAACACACGTCG 60.069 52.381 0.00 0.00 0.00 5.12
176 177 0.387622 TAGTAGCCAACACACGTCGC 60.388 55.000 0.00 0.00 0.00 5.19
177 178 1.663702 GTAGCCAACACACGTCGCT 60.664 57.895 0.00 0.00 35.47 4.93
178 179 0.387622 GTAGCCAACACACGTCGCTA 60.388 55.000 0.00 0.00 33.81 4.26
179 180 0.109458 TAGCCAACACACGTCGCTAG 60.109 55.000 0.00 0.00 33.81 3.42
180 181 3.011760 GCCAACACACGTCGCTAGC 62.012 63.158 4.06 4.06 0.00 3.42
181 182 2.380410 CCAACACACGTCGCTAGCC 61.380 63.158 9.66 0.00 0.00 3.93
182 183 1.663388 CAACACACGTCGCTAGCCA 60.663 57.895 9.66 0.00 0.00 4.75
183 184 1.068417 AACACACGTCGCTAGCCAA 59.932 52.632 9.66 0.00 0.00 4.52
184 185 1.219522 AACACACGTCGCTAGCCAAC 61.220 55.000 9.66 6.99 0.00 3.77
185 186 1.372997 CACACGTCGCTAGCCAACT 60.373 57.895 9.66 0.00 0.00 3.16
186 187 1.372997 ACACGTCGCTAGCCAACTG 60.373 57.895 9.66 10.06 0.00 3.16
187 188 2.432628 ACGTCGCTAGCCAACTGC 60.433 61.111 9.66 0.00 41.71 4.40
188 189 2.432456 CGTCGCTAGCCAACTGCA 60.432 61.111 9.66 0.00 44.83 4.41
189 190 2.027073 CGTCGCTAGCCAACTGCAA 61.027 57.895 9.66 0.00 44.83 4.08
190 191 1.790387 GTCGCTAGCCAACTGCAAG 59.210 57.895 9.66 0.00 44.83 4.01
191 192 2.034879 TCGCTAGCCAACTGCAAGC 61.035 57.895 9.66 0.00 44.83 4.01
192 193 2.037136 CGCTAGCCAACTGCAAGCT 61.037 57.895 9.66 4.42 44.83 3.74
193 194 1.799383 GCTAGCCAACTGCAAGCTC 59.201 57.895 2.29 0.00 44.83 4.09
194 195 1.975363 GCTAGCCAACTGCAAGCTCG 61.975 60.000 2.29 0.29 44.83 5.03
195 196 0.390340 CTAGCCAACTGCAAGCTCGA 60.390 55.000 3.72 0.00 44.83 4.04
196 197 0.390340 TAGCCAACTGCAAGCTCGAG 60.390 55.000 8.45 8.45 44.83 4.04
197 198 1.669115 GCCAACTGCAAGCTCGAGA 60.669 57.895 18.75 0.00 40.77 4.04
198 199 1.633852 GCCAACTGCAAGCTCGAGAG 61.634 60.000 18.75 6.57 40.77 3.20
199 200 1.018226 CCAACTGCAAGCTCGAGAGG 61.018 60.000 18.75 5.28 37.60 3.69
200 201 1.018226 CAACTGCAAGCTCGAGAGGG 61.018 60.000 18.75 4.88 37.60 4.30
201 202 2.177594 AACTGCAAGCTCGAGAGGGG 62.178 60.000 18.75 2.90 37.60 4.79
202 203 3.382803 CTGCAAGCTCGAGAGGGGG 62.383 68.421 18.75 0.97 0.00 5.40
203 204 3.077556 GCAAGCTCGAGAGGGGGA 61.078 66.667 18.75 0.00 0.00 4.81
204 205 3.087666 GCAAGCTCGAGAGGGGGAG 62.088 68.421 18.75 0.00 0.00 4.30
205 206 2.042435 AAGCTCGAGAGGGGGAGG 60.042 66.667 18.75 0.00 0.00 4.30
206 207 3.687828 AAGCTCGAGAGGGGGAGGG 62.688 68.421 18.75 0.00 0.00 4.30
208 209 4.548513 CTCGAGAGGGGGAGGGGG 62.549 77.778 6.58 0.00 0.00 5.40
234 235 2.597510 GTCACCCCAACCTGCACC 60.598 66.667 0.00 0.00 0.00 5.01
235 236 3.099841 TCACCCCAACCTGCACCA 61.100 61.111 0.00 0.00 0.00 4.17
279 280 2.854777 GAGGAGATCGTCATTGTCAACG 59.145 50.000 0.00 0.00 40.17 4.10
280 281 1.324736 GGAGATCGTCATTGTCAACGC 59.675 52.381 0.00 0.00 38.72 4.84
283 284 0.713883 ATCGTCATTGTCAACGCGAC 59.286 50.000 15.93 0.00 45.61 5.19
302 303 3.763671 CCACCAAGAAGGCACCAC 58.236 61.111 0.00 0.00 43.14 4.16
371 372 2.812619 AATCGCAGCCCTAGCCTCC 61.813 63.158 0.00 0.00 41.25 4.30
372 373 3.765257 ATCGCAGCCCTAGCCTCCT 62.765 63.158 0.00 0.00 41.25 3.69
375 376 2.443016 CAGCCCTAGCCTCCTCGT 60.443 66.667 0.00 0.00 41.25 4.18
377 378 0.755698 CAGCCCTAGCCTCCTCGTAA 60.756 60.000 0.00 0.00 41.25 3.18
382 383 1.453762 CTAGCCTCCTCGTAACCCGG 61.454 65.000 0.00 0.00 37.11 5.73
386 387 1.679977 CTCCTCGTAACCCGGACCA 60.680 63.158 0.73 0.00 37.11 4.02
392 393 0.249741 CGTAACCCGGACCATCCATC 60.250 60.000 0.73 0.00 35.91 3.51
393 394 0.834612 GTAACCCGGACCATCCATCA 59.165 55.000 0.73 0.00 35.91 3.07
403 404 3.326006 GGACCATCCATCAGCAAGATCTA 59.674 47.826 0.00 0.00 36.28 1.98
409 410 2.971330 CCATCAGCAAGATCTAGACCCT 59.029 50.000 0.00 0.00 33.72 4.34
410 411 4.140924 TCCATCAGCAAGATCTAGACCCTA 60.141 45.833 0.00 0.00 33.72 3.53
423 424 3.385314 AGACCCTACCCTCTTAGACAC 57.615 52.381 0.00 0.00 0.00 3.67
477 478 2.976490 GCCAGCTGACTCCCATGGT 61.976 63.158 17.39 0.00 33.42 3.55
577 578 1.277580 CCACCTGATGAAGAGGGCCT 61.278 60.000 5.25 5.25 34.56 5.19
578 579 0.179936 CACCTGATGAAGAGGGCCTC 59.820 60.000 26.42 26.42 34.56 4.70
579 580 0.252881 ACCTGATGAAGAGGGCCTCA 60.253 55.000 33.86 16.33 34.56 3.86
580 581 0.179936 CCTGATGAAGAGGGCCTCAC 59.820 60.000 33.86 25.71 32.06 3.51
581 582 0.179089 CTGATGAAGAGGGCCTCACG 60.179 60.000 33.86 11.58 32.06 4.35
582 583 1.144936 GATGAAGAGGGCCTCACGG 59.855 63.158 33.86 0.00 32.06 4.94
604 605 2.360726 TGCACCATGCCAGCAGAG 60.361 61.111 0.00 0.00 44.23 3.35
605 606 3.138798 GCACCATGCCAGCAGAGG 61.139 66.667 11.20 11.20 37.42 3.69
606 607 2.353958 CACCATGCCAGCAGAGGT 59.646 61.111 12.33 12.33 38.34 3.85
607 608 2.044555 CACCATGCCAGCAGAGGTG 61.045 63.158 23.97 23.97 44.01 4.00
613 614 2.662596 CCAGCAGAGGTGGCGTTA 59.337 61.111 1.95 0.00 44.28 3.18
614 615 1.448540 CCAGCAGAGGTGGCGTTAG 60.449 63.158 1.95 0.00 44.28 2.34
615 616 1.448540 CAGCAGAGGTGGCGTTAGG 60.449 63.158 0.00 0.00 36.08 2.69
616 617 2.125106 GCAGAGGTGGCGTTAGGG 60.125 66.667 0.00 0.00 0.00 3.53
617 618 2.584608 CAGAGGTGGCGTTAGGGG 59.415 66.667 0.00 0.00 0.00 4.79
618 619 2.122056 AGAGGTGGCGTTAGGGGT 59.878 61.111 0.00 0.00 0.00 4.95
619 620 0.974010 CAGAGGTGGCGTTAGGGGTA 60.974 60.000 0.00 0.00 0.00 3.69
620 621 0.031414 AGAGGTGGCGTTAGGGGTAT 60.031 55.000 0.00 0.00 0.00 2.73
621 622 0.835276 GAGGTGGCGTTAGGGGTATT 59.165 55.000 0.00 0.00 0.00 1.89
622 623 0.835276 AGGTGGCGTTAGGGGTATTC 59.165 55.000 0.00 0.00 0.00 1.75
623 624 0.835276 GGTGGCGTTAGGGGTATTCT 59.165 55.000 0.00 0.00 0.00 2.40
624 625 1.211212 GGTGGCGTTAGGGGTATTCTT 59.789 52.381 0.00 0.00 0.00 2.52
625 626 2.285977 GTGGCGTTAGGGGTATTCTTG 58.714 52.381 0.00 0.00 0.00 3.02
626 627 1.210967 TGGCGTTAGGGGTATTCTTGG 59.789 52.381 0.00 0.00 0.00 3.61
627 628 1.487558 GGCGTTAGGGGTATTCTTGGA 59.512 52.381 0.00 0.00 0.00 3.53
628 629 2.105993 GGCGTTAGGGGTATTCTTGGAT 59.894 50.000 0.00 0.00 0.00 3.41
629 630 3.400255 GCGTTAGGGGTATTCTTGGATC 58.600 50.000 0.00 0.00 0.00 3.36
630 631 3.071167 GCGTTAGGGGTATTCTTGGATCT 59.929 47.826 0.00 0.00 0.00 2.75
631 632 4.444449 GCGTTAGGGGTATTCTTGGATCTT 60.444 45.833 0.00 0.00 0.00 2.40
632 633 5.298347 CGTTAGGGGTATTCTTGGATCTTC 58.702 45.833 0.00 0.00 0.00 2.87
633 634 5.163343 CGTTAGGGGTATTCTTGGATCTTCA 60.163 44.000 0.00 0.00 0.00 3.02
634 635 6.464465 CGTTAGGGGTATTCTTGGATCTTCAT 60.464 42.308 0.00 0.00 0.00 2.57
635 636 5.316158 AGGGGTATTCTTGGATCTTCATG 57.684 43.478 0.00 0.00 0.00 3.07
636 637 4.728860 AGGGGTATTCTTGGATCTTCATGT 59.271 41.667 0.00 0.00 0.00 3.21
637 638 4.823989 GGGGTATTCTTGGATCTTCATGTG 59.176 45.833 0.00 0.00 0.00 3.21
638 639 5.397899 GGGGTATTCTTGGATCTTCATGTGA 60.398 44.000 0.00 0.00 0.00 3.58
639 640 6.122277 GGGTATTCTTGGATCTTCATGTGAA 58.878 40.000 0.00 0.00 0.00 3.18
640 641 6.774656 GGGTATTCTTGGATCTTCATGTGAAT 59.225 38.462 0.00 0.00 33.01 2.57
641 642 7.939039 GGGTATTCTTGGATCTTCATGTGAATA 59.061 37.037 0.00 0.00 33.01 1.75
642 643 8.778358 GGTATTCTTGGATCTTCATGTGAATAC 58.222 37.037 0.00 0.00 41.52 1.89
643 644 7.814264 ATTCTTGGATCTTCATGTGAATACC 57.186 36.000 0.00 2.00 33.01 2.73
644 645 5.684704 TCTTGGATCTTCATGTGAATACCC 58.315 41.667 0.00 0.00 33.01 3.69
645 646 5.191522 TCTTGGATCTTCATGTGAATACCCA 59.808 40.000 0.00 0.00 33.01 4.51
646 647 5.651612 TGGATCTTCATGTGAATACCCAT 57.348 39.130 0.00 0.00 33.01 4.00
647 648 6.762077 TGGATCTTCATGTGAATACCCATA 57.238 37.500 0.00 0.00 33.01 2.74
648 649 7.147958 TGGATCTTCATGTGAATACCCATAA 57.852 36.000 0.00 0.00 33.01 1.90
649 650 7.758609 TGGATCTTCATGTGAATACCCATAAT 58.241 34.615 0.00 0.00 33.01 1.28
650 651 8.226810 TGGATCTTCATGTGAATACCCATAATT 58.773 33.333 0.00 0.00 33.01 1.40
651 652 9.082313 GGATCTTCATGTGAATACCCATAATTT 57.918 33.333 0.00 0.00 33.01 1.82
667 668 9.103861 ACCCATAATTTTTACAAAACAGTGTTG 57.896 29.630 9.79 1.46 32.75 3.33
668 669 9.103861 CCCATAATTTTTACAAAACAGTGTTGT 57.896 29.630 13.82 13.82 41.89 3.32
679 680 4.740741 AACAGTGTTGTTTTGGCAAAAC 57.259 36.364 36.69 36.69 45.01 2.43
689 690 5.544136 GTTTTGGCAAAACAGTGACAATT 57.456 34.783 37.66 0.00 45.85 2.32
690 691 5.937187 GTTTTGGCAAAACAGTGACAATTT 58.063 33.333 37.66 0.00 45.85 1.82
691 692 6.377780 GTTTTGGCAAAACAGTGACAATTTT 58.622 32.000 37.66 0.00 45.85 1.82
692 693 6.566197 TTTGGCAAAACAGTGACAATTTTT 57.434 29.167 10.83 0.00 45.85 1.94
693 694 7.672983 TTTGGCAAAACAGTGACAATTTTTA 57.327 28.000 10.83 0.00 45.85 1.52
694 695 7.672983 TTGGCAAAACAGTGACAATTTTTAA 57.327 28.000 0.00 0.00 41.69 1.52
695 696 7.672983 TGGCAAAACAGTGACAATTTTTAAA 57.327 28.000 0.00 0.00 32.03 1.52
696 697 8.099364 TGGCAAAACAGTGACAATTTTTAAAA 57.901 26.923 0.00 0.00 32.03 1.52
697 698 8.567948 TGGCAAAACAGTGACAATTTTTAAAAA 58.432 25.926 15.38 15.38 32.03 1.94
723 724 9.761504 AACAACAATGATTTTGAATACACATGA 57.238 25.926 0.00 0.00 0.00 3.07
724 725 9.761504 ACAACAATGATTTTGAATACACATGAA 57.238 25.926 0.00 0.00 0.00 2.57
729 730 8.786937 ATGATTTTGAATACACATGAATACGC 57.213 30.769 0.00 0.00 0.00 4.42
730 731 6.904543 TGATTTTGAATACACATGAATACGCG 59.095 34.615 3.53 3.53 0.00 6.01
731 732 6.410243 TTTTGAATACACATGAATACGCGA 57.590 33.333 15.93 0.00 0.00 5.87
732 733 6.410243 TTTGAATACACATGAATACGCGAA 57.590 33.333 15.93 0.00 0.00 4.70
733 734 6.410243 TTGAATACACATGAATACGCGAAA 57.590 33.333 15.93 0.00 0.00 3.46
734 735 6.031549 TGAATACACATGAATACGCGAAAG 57.968 37.500 15.93 0.00 0.00 2.62
770 771 3.574445 GCTGCATGCCAGAGCTCG 61.574 66.667 16.68 3.24 44.64 5.03
840 841 2.597217 CCCCGCAAAGCTGTTCCA 60.597 61.111 0.00 0.00 0.00 3.53
855 856 3.499737 CCACGCCAGCCATCGAAC 61.500 66.667 0.00 0.00 0.00 3.95
863 864 0.872021 CAGCCATCGAACGAGGTAGC 60.872 60.000 7.97 5.31 0.00 3.58
869 870 0.524816 TCGAACGAGGTAGCGCATTC 60.525 55.000 11.47 0.00 33.86 2.67
958 959 2.755469 GCACCCATGCCCGACAAT 60.755 61.111 0.00 0.00 46.97 2.71
976 977 1.028905 ATGCGAGCCAGAGACTAGTC 58.971 55.000 15.41 15.41 0.00 2.59
1055 1067 4.726876 GCGCCTTCTTATTCTTAAACCACG 60.727 45.833 0.00 0.00 0.00 4.94
1159 1198 2.520741 CGCTCCTCCTCCTCCTCC 60.521 72.222 0.00 0.00 0.00 4.30
1161 1200 1.152546 GCTCCTCCTCCTCCTCCTC 60.153 68.421 0.00 0.00 0.00 3.71
1162 1201 1.943730 GCTCCTCCTCCTCCTCCTCA 61.944 65.000 0.00 0.00 0.00 3.86
1238 1283 4.388499 TCCTTTCCCCGCACGAGC 62.388 66.667 0.00 0.00 37.42 5.03
1574 1648 2.304761 TCATCGAGGTACCCTGCTTTTT 59.695 45.455 8.74 0.00 31.76 1.94
1577 1651 2.027837 TCGAGGTACCCTGCTTTTTACC 60.028 50.000 8.74 0.00 31.76 2.85
1585 2443 2.552373 CCCTGCTTTTTACCTCCTTCGT 60.552 50.000 0.00 0.00 0.00 3.85
1590 2448 3.426292 GCTTTTTACCTCCTTCGTCATGC 60.426 47.826 0.00 0.00 0.00 4.06
1648 2521 2.484594 CCGTGCCTTGGTCCAAAATTTT 60.485 45.455 5.64 0.00 0.00 1.82
1827 2729 7.920908 ACTAACACTACTGTTCGACTTTTAC 57.079 36.000 0.00 0.00 41.15 2.01
1831 2733 5.807011 ACACTACTGTTCGACTTTTACGTTT 59.193 36.000 0.00 0.00 0.00 3.60
1832 2734 6.118195 CACTACTGTTCGACTTTTACGTTTG 58.882 40.000 0.00 0.00 0.00 2.93
1849 2751 4.142049 ACGTTTGATGAAATTTGTGTGGGT 60.142 37.500 0.00 0.00 0.00 4.51
2051 2959 2.359967 GGCGGCAGTAAGTCCCTCT 61.360 63.158 3.07 0.00 0.00 3.69
2061 2969 5.665459 CAGTAAGTCCCTCTCCAACTAATG 58.335 45.833 0.00 0.00 0.00 1.90
2068 2979 5.048713 GTCCCTCTCCAACTAATGTGTTTTG 60.049 44.000 0.00 0.00 0.00 2.44
2085 3002 7.690228 TGTGTTTTGTGCCTATTATATTCGTC 58.310 34.615 0.00 0.00 0.00 4.20
2088 3009 3.581755 TGTGCCTATTATATTCGTCCGC 58.418 45.455 0.00 0.00 0.00 5.54
2263 3650 0.742281 CACCCATCCTGCAGTTCGAG 60.742 60.000 13.81 0.71 0.00 4.04
2332 3719 8.334263 ACTTCAAGGTACAGTACTACTACTTC 57.666 38.462 10.62 0.00 30.03 3.01
2472 4240 0.457509 CTACGTCTGCTGCAGAGTGG 60.458 60.000 31.10 25.08 41.46 4.00
2628 6454 0.881118 TGATGGCGCTTTTCTTCACC 59.119 50.000 7.64 0.00 0.00 4.02
2754 6594 6.825721 GGTGAGGTCTTGATTATGAGTTCATT 59.174 38.462 0.00 0.00 37.76 2.57
3024 6910 7.699812 CCAAGAAAGATACAGCTGCTTATTTTC 59.300 37.037 15.27 16.35 0.00 2.29
3216 7112 9.334947 CAACTCTCAATCATAACATACAAGGAT 57.665 33.333 0.00 0.00 0.00 3.24
4068 10935 4.817318 TGCAAAAAGAGGACCTGTTTTT 57.183 36.364 27.90 27.90 44.06 1.94
4654 11555 7.489113 GCAGAAAATTGACAAAGTTCTCAAGAA 59.511 33.333 11.76 0.00 30.04 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 0.250234 TTCGTCTGAGGATGCCAAGG 59.750 55.000 0.35 0.00 0.00 3.61
2 3 1.066573 AGTTCGTCTGAGGATGCCAAG 60.067 52.381 0.35 0.00 0.00 3.61
4 5 0.247460 CAGTTCGTCTGAGGATGCCA 59.753 55.000 0.35 0.00 46.27 4.92
6 7 1.086634 GCCAGTTCGTCTGAGGATGC 61.087 60.000 10.79 0.00 46.27 3.91
9 10 1.533033 TGGCCAGTTCGTCTGAGGA 60.533 57.895 0.00 0.00 46.27 3.71
10 11 1.374758 GTGGCCAGTTCGTCTGAGG 60.375 63.158 5.11 0.00 46.27 3.86
11 12 1.374758 GGTGGCCAGTTCGTCTGAG 60.375 63.158 5.11 4.20 46.27 3.35
12 13 2.741092 GGTGGCCAGTTCGTCTGA 59.259 61.111 5.11 0.00 46.27 3.27
13 14 2.738521 CGGTGGCCAGTTCGTCTG 60.739 66.667 5.11 0.00 43.27 3.51
14 15 2.915659 TCGGTGGCCAGTTCGTCT 60.916 61.111 5.11 0.00 0.00 4.18
15 16 2.737376 GTCGGTGGCCAGTTCGTC 60.737 66.667 5.11 5.06 0.00 4.20
16 17 2.781595 GATGTCGGTGGCCAGTTCGT 62.782 60.000 5.11 0.00 0.00 3.85
17 18 2.047274 ATGTCGGTGGCCAGTTCG 60.047 61.111 5.11 11.52 0.00 3.95
18 19 0.392998 ATGATGTCGGTGGCCAGTTC 60.393 55.000 5.11 0.00 0.00 3.01
19 20 0.908910 TATGATGTCGGTGGCCAGTT 59.091 50.000 5.11 0.00 0.00 3.16
20 21 0.908910 TTATGATGTCGGTGGCCAGT 59.091 50.000 5.11 0.00 0.00 4.00
21 22 1.299541 GTTATGATGTCGGTGGCCAG 58.700 55.000 5.11 0.00 0.00 4.85
22 23 0.615850 TGTTATGATGTCGGTGGCCA 59.384 50.000 0.00 0.00 0.00 5.36
23 24 1.014352 GTGTTATGATGTCGGTGGCC 58.986 55.000 0.00 0.00 0.00 5.36
24 25 0.650512 CGTGTTATGATGTCGGTGGC 59.349 55.000 0.00 0.00 0.00 5.01
25 26 0.650512 GCGTGTTATGATGTCGGTGG 59.349 55.000 0.00 0.00 0.00 4.61
26 27 0.297525 CGCGTGTTATGATGTCGGTG 59.702 55.000 0.00 0.00 0.00 4.94
27 28 0.171679 TCGCGTGTTATGATGTCGGT 59.828 50.000 5.77 0.00 0.00 4.69
28 29 0.570734 GTCGCGTGTTATGATGTCGG 59.429 55.000 5.77 0.00 0.00 4.79
29 30 0.570734 GGTCGCGTGTTATGATGTCG 59.429 55.000 5.77 0.00 0.00 4.35
30 31 0.570734 CGGTCGCGTGTTATGATGTC 59.429 55.000 5.77 0.00 0.00 3.06
31 32 1.418342 GCGGTCGCGTGTTATGATGT 61.418 55.000 5.77 0.00 0.00 3.06
32 33 1.272715 GCGGTCGCGTGTTATGATG 59.727 57.895 5.77 0.00 0.00 3.07
33 34 1.881252 GGCGGTCGCGTGTTATGAT 60.881 57.895 5.77 0.00 43.06 2.45
34 35 2.507547 GGCGGTCGCGTGTTATGA 60.508 61.111 5.77 0.00 43.06 2.15
35 36 2.811747 TGGCGGTCGCGTGTTATG 60.812 61.111 5.77 0.00 43.06 1.90
36 37 2.812178 GTGGCGGTCGCGTGTTAT 60.812 61.111 5.77 0.00 43.06 1.89
48 49 3.783362 TTGAGTGGTTGGGGTGGCG 62.783 63.158 0.00 0.00 0.00 5.69
49 50 2.197324 TTGAGTGGTTGGGGTGGC 59.803 61.111 0.00 0.00 0.00 5.01
50 51 1.896660 CGTTGAGTGGTTGGGGTGG 60.897 63.158 0.00 0.00 0.00 4.61
51 52 1.147376 TCGTTGAGTGGTTGGGGTG 59.853 57.895 0.00 0.00 0.00 4.61
52 53 1.147600 GTCGTTGAGTGGTTGGGGT 59.852 57.895 0.00 0.00 0.00 4.95
53 54 1.147376 TGTCGTTGAGTGGTTGGGG 59.853 57.895 0.00 0.00 0.00 4.96
54 55 0.462937 TGTGTCGTTGAGTGGTTGGG 60.463 55.000 0.00 0.00 0.00 4.12
55 56 0.655733 GTGTGTCGTTGAGTGGTTGG 59.344 55.000 0.00 0.00 0.00 3.77
56 57 0.655733 GGTGTGTCGTTGAGTGGTTG 59.344 55.000 0.00 0.00 0.00 3.77
57 58 0.250793 TGGTGTGTCGTTGAGTGGTT 59.749 50.000 0.00 0.00 0.00 3.67
58 59 0.461339 GTGGTGTGTCGTTGAGTGGT 60.461 55.000 0.00 0.00 0.00 4.16
59 60 1.157870 GGTGGTGTGTCGTTGAGTGG 61.158 60.000 0.00 0.00 0.00 4.00
60 61 0.179084 AGGTGGTGTGTCGTTGAGTG 60.179 55.000 0.00 0.00 0.00 3.51
61 62 0.539986 AAGGTGGTGTGTCGTTGAGT 59.460 50.000 0.00 0.00 0.00 3.41
62 63 0.937304 CAAGGTGGTGTGTCGTTGAG 59.063 55.000 0.00 0.00 33.20 3.02
63 64 0.537653 TCAAGGTGGTGTGTCGTTGA 59.462 50.000 0.00 0.00 36.54 3.18
64 65 0.655733 GTCAAGGTGGTGTGTCGTTG 59.344 55.000 0.00 0.00 0.00 4.10
65 66 0.539986 AGTCAAGGTGGTGTGTCGTT 59.460 50.000 0.00 0.00 0.00 3.85
66 67 0.179084 CAGTCAAGGTGGTGTGTCGT 60.179 55.000 0.00 0.00 0.00 4.34
67 68 0.880278 CCAGTCAAGGTGGTGTGTCG 60.880 60.000 0.00 0.00 0.00 4.35
68 69 0.468226 TCCAGTCAAGGTGGTGTGTC 59.532 55.000 0.00 0.00 36.37 3.67
69 70 0.180406 GTCCAGTCAAGGTGGTGTGT 59.820 55.000 0.00 0.00 36.37 3.72
70 71 0.180171 TGTCCAGTCAAGGTGGTGTG 59.820 55.000 0.00 0.00 36.37 3.82
71 72 0.469917 CTGTCCAGTCAAGGTGGTGT 59.530 55.000 0.00 0.00 36.37 4.16
72 73 0.758734 TCTGTCCAGTCAAGGTGGTG 59.241 55.000 0.00 0.00 36.37 4.17
73 74 1.051812 CTCTGTCCAGTCAAGGTGGT 58.948 55.000 0.00 0.00 36.37 4.16
74 75 1.274728 CTCTCTGTCCAGTCAAGGTGG 59.725 57.143 0.00 0.00 36.28 4.61
75 76 1.274728 CCTCTCTGTCCAGTCAAGGTG 59.725 57.143 0.00 0.00 0.00 4.00
76 77 1.148027 TCCTCTCTGTCCAGTCAAGGT 59.852 52.381 10.14 0.00 0.00 3.50
77 78 1.930251 TCCTCTCTGTCCAGTCAAGG 58.070 55.000 0.00 1.13 0.00 3.61
78 79 3.513119 TCATTCCTCTCTGTCCAGTCAAG 59.487 47.826 0.00 0.00 0.00 3.02
79 80 3.510459 TCATTCCTCTCTGTCCAGTCAA 58.490 45.455 0.00 0.00 0.00 3.18
80 81 3.095332 CTCATTCCTCTCTGTCCAGTCA 58.905 50.000 0.00 0.00 0.00 3.41
81 82 3.360867 TCTCATTCCTCTCTGTCCAGTC 58.639 50.000 0.00 0.00 0.00 3.51
82 83 3.464720 TCTCATTCCTCTCTGTCCAGT 57.535 47.619 0.00 0.00 0.00 4.00
83 84 3.513119 TGTTCTCATTCCTCTCTGTCCAG 59.487 47.826 0.00 0.00 0.00 3.86
84 85 3.259374 GTGTTCTCATTCCTCTCTGTCCA 59.741 47.826 0.00 0.00 0.00 4.02
85 86 3.674682 CGTGTTCTCATTCCTCTCTGTCC 60.675 52.174 0.00 0.00 0.00 4.02
86 87 3.506810 CGTGTTCTCATTCCTCTCTGTC 58.493 50.000 0.00 0.00 0.00 3.51
87 88 2.353208 GCGTGTTCTCATTCCTCTCTGT 60.353 50.000 0.00 0.00 0.00 3.41
88 89 2.266554 GCGTGTTCTCATTCCTCTCTG 58.733 52.381 0.00 0.00 0.00 3.35
89 90 1.135257 CGCGTGTTCTCATTCCTCTCT 60.135 52.381 0.00 0.00 0.00 3.10
90 91 1.272781 CGCGTGTTCTCATTCCTCTC 58.727 55.000 0.00 0.00 0.00 3.20
91 92 0.603569 ACGCGTGTTCTCATTCCTCT 59.396 50.000 12.93 0.00 0.00 3.69
92 93 0.716108 CACGCGTGTTCTCATTCCTC 59.284 55.000 30.50 0.00 0.00 3.71
93 94 0.317160 TCACGCGTGTTCTCATTCCT 59.683 50.000 35.74 0.00 0.00 3.36
94 95 0.716108 CTCACGCGTGTTCTCATTCC 59.284 55.000 35.74 0.00 0.00 3.01
95 96 0.716108 CCTCACGCGTGTTCTCATTC 59.284 55.000 35.74 0.00 0.00 2.67
96 97 0.670546 CCCTCACGCGTGTTCTCATT 60.671 55.000 35.74 0.00 0.00 2.57
97 98 1.079819 CCCTCACGCGTGTTCTCAT 60.080 57.895 35.74 0.00 0.00 2.90
98 99 2.338620 CCCTCACGCGTGTTCTCA 59.661 61.111 35.74 17.62 0.00 3.27
99 100 2.432628 CCCCTCACGCGTGTTCTC 60.433 66.667 35.74 0.00 0.00 2.87
100 101 1.466025 TAACCCCTCACGCGTGTTCT 61.466 55.000 35.74 18.59 0.00 3.01
101 102 0.390735 ATAACCCCTCACGCGTGTTC 60.391 55.000 35.74 0.00 0.00 3.18
102 103 0.390735 GATAACCCCTCACGCGTGTT 60.391 55.000 35.74 24.82 0.00 3.32
103 104 1.217244 GATAACCCCTCACGCGTGT 59.783 57.895 35.74 19.86 0.00 4.49
104 105 0.390603 TTGATAACCCCTCACGCGTG 60.391 55.000 32.76 32.76 0.00 5.34
105 106 0.390735 GTTGATAACCCCTCACGCGT 60.391 55.000 5.58 5.58 0.00 6.01
106 107 1.087771 GGTTGATAACCCCTCACGCG 61.088 60.000 3.53 3.53 46.12 6.01
107 108 2.776659 GGTTGATAACCCCTCACGC 58.223 57.895 0.00 0.00 46.12 5.34
125 126 0.037232 GACTTTGTCCCCTGTCGAGG 60.037 60.000 0.00 0.00 39.42 4.63
126 127 0.037232 GGACTTTGTCCCCTGTCGAG 60.037 60.000 5.49 0.00 46.19 4.04
127 128 2.055299 GGACTTTGTCCCCTGTCGA 58.945 57.895 5.49 0.00 46.19 4.20
128 129 4.695560 GGACTTTGTCCCCTGTCG 57.304 61.111 5.49 0.00 46.19 4.35
136 137 0.467290 TGCAGGGGTTGGACTTTGTC 60.467 55.000 0.00 0.00 0.00 3.18
137 138 0.755327 GTGCAGGGGTTGGACTTTGT 60.755 55.000 0.00 0.00 44.03 2.83
138 139 2.041153 GTGCAGGGGTTGGACTTTG 58.959 57.895 0.00 0.00 44.03 2.77
139 140 4.599036 GTGCAGGGGTTGGACTTT 57.401 55.556 0.00 0.00 44.03 2.66
143 144 1.568504 CTACTAGTGCAGGGGTTGGA 58.431 55.000 5.39 0.00 0.00 3.53
144 145 0.107654 GCTACTAGTGCAGGGGTTGG 60.108 60.000 5.39 0.00 0.00 3.77
145 146 0.107654 GGCTACTAGTGCAGGGGTTG 60.108 60.000 5.39 0.00 0.00 3.77
146 147 0.546747 TGGCTACTAGTGCAGGGGTT 60.547 55.000 5.39 0.00 0.00 4.11
147 148 0.546747 TTGGCTACTAGTGCAGGGGT 60.547 55.000 5.39 0.00 0.00 4.95
148 149 0.107654 GTTGGCTACTAGTGCAGGGG 60.108 60.000 5.39 0.00 0.00 4.79
149 150 0.613260 TGTTGGCTACTAGTGCAGGG 59.387 55.000 5.39 0.00 0.00 4.45
150 151 1.001974 TGTGTTGGCTACTAGTGCAGG 59.998 52.381 5.39 0.00 0.00 4.85
151 152 2.069273 GTGTGTTGGCTACTAGTGCAG 58.931 52.381 5.39 0.00 0.00 4.41
152 153 1.604438 CGTGTGTTGGCTACTAGTGCA 60.604 52.381 5.39 0.00 0.00 4.57
153 154 1.068474 CGTGTGTTGGCTACTAGTGC 58.932 55.000 5.39 7.18 0.00 4.40
154 155 2.325761 GACGTGTGTTGGCTACTAGTG 58.674 52.381 5.39 0.00 0.00 2.74
155 156 1.068748 CGACGTGTGTTGGCTACTAGT 60.069 52.381 0.00 0.00 0.00 2.57
156 157 1.614385 CGACGTGTGTTGGCTACTAG 58.386 55.000 0.00 0.00 0.00 2.57
157 158 0.387622 GCGACGTGTGTTGGCTACTA 60.388 55.000 0.00 0.00 0.00 1.82
158 159 1.663702 GCGACGTGTGTTGGCTACT 60.664 57.895 0.00 0.00 0.00 2.57
159 160 0.387622 TAGCGACGTGTGTTGGCTAC 60.388 55.000 0.00 0.00 38.56 3.58
160 161 0.109458 CTAGCGACGTGTGTTGGCTA 60.109 55.000 0.00 0.00 38.56 3.93
161 162 1.372997 CTAGCGACGTGTGTTGGCT 60.373 57.895 0.00 0.00 40.11 4.75
162 163 3.011760 GCTAGCGACGTGTGTTGGC 62.012 63.158 0.00 0.00 0.00 4.52
163 164 2.380410 GGCTAGCGACGTGTGTTGG 61.380 63.158 9.00 0.00 0.00 3.77
164 165 1.218875 TTGGCTAGCGACGTGTGTTG 61.219 55.000 9.00 0.00 0.00 3.33
165 166 1.068417 TTGGCTAGCGACGTGTGTT 59.932 52.632 9.00 0.00 0.00 3.32
166 167 1.663702 GTTGGCTAGCGACGTGTGT 60.664 57.895 9.00 0.00 0.00 3.72
167 168 1.372997 AGTTGGCTAGCGACGTGTG 60.373 57.895 9.00 0.00 0.00 3.82
168 169 1.372997 CAGTTGGCTAGCGACGTGT 60.373 57.895 9.00 0.00 0.00 4.49
169 170 2.730672 GCAGTTGGCTAGCGACGTG 61.731 63.158 9.00 5.92 40.25 4.49
170 171 2.432628 GCAGTTGGCTAGCGACGT 60.433 61.111 9.00 0.00 40.25 4.34
171 172 1.959899 CTTGCAGTTGGCTAGCGACG 61.960 60.000 9.00 7.74 45.15 5.12
172 173 1.790387 CTTGCAGTTGGCTAGCGAC 59.210 57.895 9.00 10.10 45.15 5.19
173 174 4.284123 CTTGCAGTTGGCTAGCGA 57.716 55.556 9.00 0.68 45.15 4.93
176 177 0.390340 TCGAGCTTGCAGTTGGCTAG 60.390 55.000 0.00 6.29 46.37 3.42
177 178 0.390340 CTCGAGCTTGCAGTTGGCTA 60.390 55.000 0.00 0.00 45.15 3.93
178 179 1.670406 CTCGAGCTTGCAGTTGGCT 60.670 57.895 0.00 5.49 45.15 4.75
179 180 1.633852 CTCTCGAGCTTGCAGTTGGC 61.634 60.000 7.81 0.00 45.13 4.52
180 181 1.018226 CCTCTCGAGCTTGCAGTTGG 61.018 60.000 7.81 0.00 0.00 3.77
181 182 1.018226 CCCTCTCGAGCTTGCAGTTG 61.018 60.000 7.81 0.00 0.00 3.16
182 183 1.294780 CCCTCTCGAGCTTGCAGTT 59.705 57.895 7.81 0.00 0.00 3.16
183 184 2.654079 CCCCTCTCGAGCTTGCAGT 61.654 63.158 7.81 0.00 0.00 4.40
184 185 2.186384 CCCCTCTCGAGCTTGCAG 59.814 66.667 7.81 0.00 0.00 4.41
185 186 3.393970 CCCCCTCTCGAGCTTGCA 61.394 66.667 7.81 0.00 0.00 4.08
186 187 3.077556 TCCCCCTCTCGAGCTTGC 61.078 66.667 7.81 0.00 0.00 4.01
187 188 2.430610 CCTCCCCCTCTCGAGCTTG 61.431 68.421 7.81 0.00 0.00 4.01
188 189 2.042435 CCTCCCCCTCTCGAGCTT 60.042 66.667 7.81 0.00 0.00 3.74
189 190 4.150454 CCCTCCCCCTCTCGAGCT 62.150 72.222 7.81 0.00 0.00 4.09
191 192 4.548513 CCCCCTCCCCCTCTCGAG 62.549 77.778 5.93 5.93 0.00 4.04
215 216 4.947147 TGCAGGTTGGGGTGACGC 62.947 66.667 0.00 0.00 44.99 5.19
216 217 2.978010 GTGCAGGTTGGGGTGACG 60.978 66.667 0.00 0.00 0.00 4.35
217 218 2.597510 GGTGCAGGTTGGGGTGAC 60.598 66.667 0.00 0.00 0.00 3.67
218 219 3.099841 TGGTGCAGGTTGGGGTGA 61.100 61.111 0.00 0.00 0.00 4.02
219 220 2.912025 GTGGTGCAGGTTGGGGTG 60.912 66.667 0.00 0.00 0.00 4.61
220 221 4.218686 GGTGGTGCAGGTTGGGGT 62.219 66.667 0.00 0.00 0.00 4.95
221 222 4.994756 GGGTGGTGCAGGTTGGGG 62.995 72.222 0.00 0.00 0.00 4.96
222 223 4.994756 GGGGTGGTGCAGGTTGGG 62.995 72.222 0.00 0.00 0.00 4.12
253 254 2.076622 AATGACGATCTCCTCCCGCG 62.077 60.000 0.00 0.00 0.00 6.46
256 257 1.757118 TGACAATGACGATCTCCTCCC 59.243 52.381 0.00 0.00 0.00 4.30
279 280 3.423154 CCTTCTTGGTGGCGTCGC 61.423 66.667 9.22 9.22 0.00 5.19
280 281 3.423154 GCCTTCTTGGTGGCGTCG 61.423 66.667 0.00 0.00 39.71 5.12
287 288 2.113139 CGGTGGTGCCTTCTTGGT 59.887 61.111 0.00 0.00 38.35 3.67
288 289 2.672996 CCGGTGGTGCCTTCTTGG 60.673 66.667 0.00 0.00 39.35 3.61
329 330 1.530771 CTTCCTCCATGGCCTCTGG 59.469 63.158 16.43 16.43 35.26 3.86
330 331 1.153005 GCTTCCTCCATGGCCTCTG 60.153 63.158 6.96 0.93 35.26 3.35
331 332 2.381941 GGCTTCCTCCATGGCCTCT 61.382 63.158 6.96 0.00 41.20 3.69
341 342 3.577313 GCGATTGGCGGCTTCCTC 61.577 66.667 11.43 0.60 41.29 3.71
353 354 2.812619 GGAGGCTAGGGCTGCGATT 61.813 63.158 0.00 0.00 38.98 3.34
375 376 1.128200 CTGATGGATGGTCCGGGTTA 58.872 55.000 0.00 0.00 40.17 2.85
377 378 2.746375 GCTGATGGATGGTCCGGGT 61.746 63.158 0.00 0.00 40.17 5.28
382 383 3.488778 AGATCTTGCTGATGGATGGTC 57.511 47.619 0.00 0.00 35.14 4.02
386 387 3.582208 GGGTCTAGATCTTGCTGATGGAT 59.418 47.826 0.00 0.00 35.14 3.41
392 393 2.630580 GGGTAGGGTCTAGATCTTGCTG 59.369 54.545 0.00 0.00 0.00 4.41
393 394 2.520549 AGGGTAGGGTCTAGATCTTGCT 59.479 50.000 0.00 0.00 0.00 3.91
403 404 2.356947 CGTGTCTAAGAGGGTAGGGTCT 60.357 54.545 0.00 0.00 0.00 3.85
409 410 1.005097 TGGAGCGTGTCTAAGAGGGTA 59.995 52.381 0.00 0.00 0.00 3.69
410 411 0.251653 TGGAGCGTGTCTAAGAGGGT 60.252 55.000 0.00 0.00 0.00 4.34
493 494 3.957586 TGTGCTCTGGGCTGTGGG 61.958 66.667 0.00 0.00 42.39 4.61
494 495 2.670934 GTGTGCTCTGGGCTGTGG 60.671 66.667 0.00 0.00 42.39 4.17
495 496 3.046087 CGTGTGCTCTGGGCTGTG 61.046 66.667 0.00 0.00 42.39 3.66
496 497 3.233980 TCGTGTGCTCTGGGCTGT 61.234 61.111 0.00 0.00 42.39 4.40
497 498 2.740055 GTCGTGTGCTCTGGGCTG 60.740 66.667 0.00 0.00 42.39 4.85
498 499 4.363990 CGTCGTGTGCTCTGGGCT 62.364 66.667 0.00 0.00 42.39 5.19
500 501 4.742201 CCCGTCGTGTGCTCTGGG 62.742 72.222 0.00 0.00 0.00 4.45
504 505 4.760047 ATGGCCCGTCGTGTGCTC 62.760 66.667 0.00 0.00 0.00 4.26
520 521 4.615815 GCCTGATCTGGCGCCGAT 62.616 66.667 26.45 26.45 43.74 4.18
588 589 3.138798 CCTCTGCTGGCATGGTGC 61.139 66.667 0.00 0.00 44.08 5.01
589 590 2.044555 CACCTCTGCTGGCATGGTG 61.045 63.158 22.77 22.77 40.84 4.17
590 591 2.353958 CACCTCTGCTGGCATGGT 59.646 61.111 12.27 12.27 34.59 3.55
591 592 2.439701 CCACCTCTGCTGGCATGG 60.440 66.667 11.27 11.27 0.00 3.66
596 597 1.448540 CTAACGCCACCTCTGCTGG 60.449 63.158 0.00 0.00 0.00 4.85
597 598 1.448540 CCTAACGCCACCTCTGCTG 60.449 63.158 0.00 0.00 0.00 4.41
598 599 2.660064 CCCTAACGCCACCTCTGCT 61.660 63.158 0.00 0.00 0.00 4.24
599 600 2.125106 CCCTAACGCCACCTCTGC 60.125 66.667 0.00 0.00 0.00 4.26
600 601 0.974010 TACCCCTAACGCCACCTCTG 60.974 60.000 0.00 0.00 0.00 3.35
601 602 0.031414 ATACCCCTAACGCCACCTCT 60.031 55.000 0.00 0.00 0.00 3.69
602 603 0.835276 AATACCCCTAACGCCACCTC 59.165 55.000 0.00 0.00 0.00 3.85
603 604 0.835276 GAATACCCCTAACGCCACCT 59.165 55.000 0.00 0.00 0.00 4.00
604 605 0.835276 AGAATACCCCTAACGCCACC 59.165 55.000 0.00 0.00 0.00 4.61
605 606 2.285977 CAAGAATACCCCTAACGCCAC 58.714 52.381 0.00 0.00 0.00 5.01
606 607 1.210967 CCAAGAATACCCCTAACGCCA 59.789 52.381 0.00 0.00 0.00 5.69
607 608 1.487558 TCCAAGAATACCCCTAACGCC 59.512 52.381 0.00 0.00 0.00 5.68
608 609 2.994186 TCCAAGAATACCCCTAACGC 57.006 50.000 0.00 0.00 0.00 4.84
609 610 4.957684 AGATCCAAGAATACCCCTAACG 57.042 45.455 0.00 0.00 0.00 3.18
610 611 6.248569 TGAAGATCCAAGAATACCCCTAAC 57.751 41.667 0.00 0.00 0.00 2.34
611 612 6.389869 ACATGAAGATCCAAGAATACCCCTAA 59.610 38.462 0.00 0.00 0.00 2.69
612 613 5.911178 ACATGAAGATCCAAGAATACCCCTA 59.089 40.000 0.00 0.00 0.00 3.53
613 614 4.728860 ACATGAAGATCCAAGAATACCCCT 59.271 41.667 0.00 0.00 0.00 4.79
614 615 4.823989 CACATGAAGATCCAAGAATACCCC 59.176 45.833 0.00 0.00 0.00 4.95
615 616 5.684704 TCACATGAAGATCCAAGAATACCC 58.315 41.667 0.00 0.00 0.00 3.69
616 617 7.814264 ATTCACATGAAGATCCAAGAATACC 57.186 36.000 0.00 0.00 37.48 2.73
617 618 8.778358 GGTATTCACATGAAGATCCAAGAATAC 58.222 37.037 0.00 0.02 42.53 1.89
618 619 7.939039 GGGTATTCACATGAAGATCCAAGAATA 59.061 37.037 12.65 0.00 43.94 1.75
619 620 6.774656 GGGTATTCACATGAAGATCCAAGAAT 59.225 38.462 12.65 0.00 43.94 2.40
620 621 6.122277 GGGTATTCACATGAAGATCCAAGAA 58.878 40.000 12.65 0.00 43.94 2.52
621 622 5.684704 GGGTATTCACATGAAGATCCAAGA 58.315 41.667 12.65 0.00 43.94 3.02
625 626 8.641498 AATTATGGGTATTCACATGAAGATCC 57.359 34.615 10.96 10.96 44.57 3.36
641 642 9.103861 CAACACTGTTTTGTAAAAATTATGGGT 57.896 29.630 0.00 0.00 0.00 4.51
642 643 9.103861 ACAACACTGTTTTGTAAAAATTATGGG 57.896 29.630 10.38 0.00 35.38 4.00
668 669 6.566197 AAAATTGTCACTGTTTTGCCAAAA 57.434 29.167 0.00 0.00 0.00 2.44
669 670 6.566197 AAAAATTGTCACTGTTTTGCCAAA 57.434 29.167 0.00 0.00 0.00 3.28
670 671 7.672983 TTAAAAATTGTCACTGTTTTGCCAA 57.327 28.000 0.00 0.00 0.00 4.52
671 672 7.672983 TTTAAAAATTGTCACTGTTTTGCCA 57.327 28.000 0.00 0.00 0.00 4.92
672 673 8.956617 TTTTTAAAAATTGTCACTGTTTTGCC 57.043 26.923 9.31 0.00 0.00 4.52
697 698 9.761504 TCATGTGTATTCAAAATCATTGTTGTT 57.238 25.926 0.00 0.00 0.00 2.83
698 699 9.761504 TTCATGTGTATTCAAAATCATTGTTGT 57.238 25.926 0.00 0.00 0.00 3.32
703 704 9.236691 GCGTATTCATGTGTATTCAAAATCATT 57.763 29.630 0.00 0.00 0.00 2.57
704 705 7.587392 CGCGTATTCATGTGTATTCAAAATCAT 59.413 33.333 0.00 0.00 0.00 2.45
705 706 6.904543 CGCGTATTCATGTGTATTCAAAATCA 59.095 34.615 0.00 0.00 0.00 2.57
706 707 7.123190 TCGCGTATTCATGTGTATTCAAAATC 58.877 34.615 5.77 0.00 0.00 2.17
707 708 7.010697 TCGCGTATTCATGTGTATTCAAAAT 57.989 32.000 5.77 0.00 0.00 1.82
708 709 6.410243 TCGCGTATTCATGTGTATTCAAAA 57.590 33.333 5.77 0.00 0.00 2.44
709 710 6.410243 TTCGCGTATTCATGTGTATTCAAA 57.590 33.333 5.77 0.00 0.00 2.69
710 711 6.410243 TTTCGCGTATTCATGTGTATTCAA 57.590 33.333 5.77 0.00 0.00 2.69
711 712 5.501736 GCTTTCGCGTATTCATGTGTATTCA 60.502 40.000 5.77 0.00 0.00 2.57
712 713 4.898488 GCTTTCGCGTATTCATGTGTATTC 59.102 41.667 5.77 0.00 0.00 1.75
713 714 4.331443 TGCTTTCGCGTATTCATGTGTATT 59.669 37.500 5.77 0.00 39.65 1.89
714 715 3.868661 TGCTTTCGCGTATTCATGTGTAT 59.131 39.130 5.77 0.00 39.65 2.29
715 716 3.254892 TGCTTTCGCGTATTCATGTGTA 58.745 40.909 5.77 0.00 39.65 2.90
716 717 2.073056 TGCTTTCGCGTATTCATGTGT 58.927 42.857 5.77 0.00 39.65 3.72
717 718 2.804421 TGCTTTCGCGTATTCATGTG 57.196 45.000 5.77 0.00 39.65 3.21
718 719 3.822594 TTTGCTTTCGCGTATTCATGT 57.177 38.095 5.77 0.00 39.65 3.21
719 720 4.204978 GGAATTTGCTTTCGCGTATTCATG 59.795 41.667 5.77 0.00 38.89 3.07
720 721 4.096382 AGGAATTTGCTTTCGCGTATTCAT 59.904 37.500 5.77 0.86 38.89 2.57
721 722 3.438781 AGGAATTTGCTTTCGCGTATTCA 59.561 39.130 5.77 0.00 38.89 2.57
722 723 3.786048 CAGGAATTTGCTTTCGCGTATTC 59.214 43.478 5.77 5.44 39.65 1.75
723 724 3.427503 CCAGGAATTTGCTTTCGCGTATT 60.428 43.478 5.77 0.00 39.65 1.89
724 725 2.097466 CCAGGAATTTGCTTTCGCGTAT 59.903 45.455 5.77 0.00 39.65 3.06
725 726 1.466950 CCAGGAATTTGCTTTCGCGTA 59.533 47.619 5.77 0.00 39.65 4.42
726 727 0.240945 CCAGGAATTTGCTTTCGCGT 59.759 50.000 5.77 0.00 39.65 6.01
727 728 0.521291 TCCAGGAATTTGCTTTCGCG 59.479 50.000 0.00 0.00 39.65 5.87
728 729 1.733718 GCTCCAGGAATTTGCTTTCGC 60.734 52.381 0.00 0.00 0.00 4.70
729 730 1.135286 GGCTCCAGGAATTTGCTTTCG 60.135 52.381 0.00 0.00 0.00 3.46
730 731 1.135286 CGGCTCCAGGAATTTGCTTTC 60.135 52.381 0.00 0.00 0.00 2.62
731 732 0.890683 CGGCTCCAGGAATTTGCTTT 59.109 50.000 0.00 0.00 0.00 3.51
732 733 1.598701 GCGGCTCCAGGAATTTGCTT 61.599 55.000 0.00 0.00 0.00 3.91
733 734 2.048603 GCGGCTCCAGGAATTTGCT 61.049 57.895 0.00 0.00 0.00 3.91
734 735 2.491621 GCGGCTCCAGGAATTTGC 59.508 61.111 0.00 0.00 0.00 3.68
735 736 2.764314 CGGCGGCTCCAGGAATTTG 61.764 63.158 7.61 0.00 34.01 2.32
736 737 2.438434 CGGCGGCTCCAGGAATTT 60.438 61.111 7.61 0.00 34.01 1.82
755 756 2.186125 CTCGAGCTCTGGCATGCA 59.814 61.111 21.36 4.79 41.70 3.96
756 757 1.592131 CTCTCGAGCTCTGGCATGC 60.592 63.158 9.90 9.90 41.70 4.06
835 836 3.499737 CGATGGCTGGCGTGGAAC 61.500 66.667 0.00 0.00 0.00 3.62
840 841 3.989698 CTCGTTCGATGGCTGGCGT 62.990 63.158 0.00 0.00 0.00 5.68
855 856 1.258982 GTTCATGAATGCGCTACCTCG 59.741 52.381 12.12 0.00 0.00 4.63
863 864 2.095617 TGACAGCAAGTTCATGAATGCG 60.096 45.455 22.13 19.25 43.39 4.73
869 870 4.482386 CCAAATCTGACAGCAAGTTCATG 58.518 43.478 0.00 0.00 0.00 3.07
908 909 0.392060 AGATGGTTTTACCCGGCGAC 60.392 55.000 9.30 0.00 37.50 5.19
909 910 0.391927 CAGATGGTTTTACCCGGCGA 60.392 55.000 9.30 0.00 37.50 5.54
958 959 0.034960 AGACTAGTCTCTGGCTCGCA 60.035 55.000 20.00 0.00 34.17 5.10
1088 1121 3.185299 ATGTTTGCCCGTCGACCCA 62.185 57.895 10.58 1.87 0.00 4.51
1238 1283 1.523258 CGCTGATGCAGGGGAGAAG 60.523 63.158 0.00 0.00 40.11 2.85
1335 1398 0.898320 GCTCCTGCTGGAAGTAGTGA 59.102 55.000 13.89 0.00 46.04 3.41
1387 1450 1.066071 GTACTTGTGGGAGAAGAGGCC 60.066 57.143 0.00 0.00 0.00 5.19
1574 1648 0.824109 CAGGCATGACGAAGGAGGTA 59.176 55.000 0.00 0.00 0.00 3.08
1577 1651 3.674528 ATATCAGGCATGACGAAGGAG 57.325 47.619 1.71 0.00 38.57 3.69
1585 2443 6.936900 GGTTAGCTTTAGAATATCAGGCATGA 59.063 38.462 2.36 2.36 40.50 3.07
1590 2448 8.944029 CATGATGGTTAGCTTTAGAATATCAGG 58.056 37.037 0.00 0.00 0.00 3.86
1648 2521 1.279527 GCGAATCAACACGTCGACCA 61.280 55.000 10.58 0.00 36.92 4.02
1713 2597 0.670162 AATGGTGTCTTGTGTGCAGC 59.330 50.000 0.00 0.00 0.00 5.25
1818 2720 7.990499 CACAAATTTCATCAAACGTAAAAGTCG 59.010 33.333 0.00 0.00 0.00 4.18
1827 2729 4.208873 CACCCACACAAATTTCATCAAACG 59.791 41.667 0.00 0.00 0.00 3.60
1831 2733 2.964464 AGCACCCACACAAATTTCATCA 59.036 40.909 0.00 0.00 0.00 3.07
1832 2734 3.243839 ACAGCACCCACACAAATTTCATC 60.244 43.478 0.00 0.00 0.00 2.92
1864 2766 0.529378 GCTTCGACTCCCCGTAGAAA 59.471 55.000 0.00 0.00 36.91 2.52
1984 2892 2.046023 TCGACGGCGGAGAGGTTA 60.046 61.111 12.58 0.00 38.28 2.85
2051 2959 3.957497 AGGCACAAAACACATTAGTTGGA 59.043 39.130 0.00 0.00 0.00 3.53
2061 2969 7.130269 GGACGAATATAATAGGCACAAAACAC 58.870 38.462 0.00 0.00 0.00 3.32
2068 2979 2.597305 CGCGGACGAATATAATAGGCAC 59.403 50.000 0.00 0.00 43.93 5.01
2161 3546 3.064271 GCACTAGAAACAACGGTCAACAA 59.936 43.478 0.00 0.00 0.00 2.83
2169 3556 1.225855 TGCCAGCACTAGAAACAACG 58.774 50.000 0.00 0.00 0.00 4.10
2361 3795 4.266714 TCCGACCAGAAATTATTTGACCC 58.733 43.478 0.00 0.00 0.00 4.46
2472 4240 1.442857 CAGAGCAGACACCGTCGAC 60.443 63.158 5.18 5.18 37.67 4.20
2628 6454 5.957798 ACACATTCATTAAACTCCATGCTG 58.042 37.500 0.00 0.00 0.00 4.41
2912 6790 6.528537 TGTCATTATTCCCATTCCTTGTTG 57.471 37.500 0.00 0.00 0.00 3.33
2959 6841 6.380079 AGAAGGACTAATCAACCATCAACT 57.620 37.500 0.00 0.00 0.00 3.16
2960 6842 5.586643 GGAGAAGGACTAATCAACCATCAAC 59.413 44.000 0.00 0.00 0.00 3.18
3024 6910 7.687941 AAATTAGTTGGATGTTACAGTCAGG 57.312 36.000 0.00 0.00 0.00 3.86
3216 7112 9.297037 CAGTAAAGGAAAAAGGAAGGAAGAATA 57.703 33.333 0.00 0.00 0.00 1.75
3864 10727 1.085893 TGGCTGTGTATGTGAATGCG 58.914 50.000 0.00 0.00 0.00 4.73
4069 10936 3.788227 TGCTTAGCAGAGGAGGAAAAA 57.212 42.857 1.39 0.00 33.32 1.94
4654 11555 3.446442 AGATGATGTTGCTCCCAAACT 57.554 42.857 0.00 0.00 31.68 2.66
5269 12194 4.374843 AGCTTTGCATTCATTATTCGCA 57.625 36.364 0.00 0.00 0.00 5.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.