Multiple sequence alignment - TraesCS7A01G509600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G509600 chr7A 100.000 2549 0 0 1 2549 696908326 696910874 0.000000e+00 4708
1 TraesCS7A01G509600 chr7A 98.332 1979 30 3 573 2549 701581941 701583918 0.000000e+00 3469
2 TraesCS7A01G509600 chr6B 98.485 1980 27 3 571 2549 660437745 660435768 0.000000e+00 3487
3 TraesCS7A01G509600 chr6B 98.281 1978 31 3 573 2549 116269146 116271121 0.000000e+00 3461
4 TraesCS7A01G509600 chr6A 98.626 1965 26 1 570 2533 617222872 617220908 0.000000e+00 3478
5 TraesCS7A01G509600 chr3A 98.384 1980 27 4 573 2549 722406047 722404070 0.000000e+00 3474
6 TraesCS7A01G509600 chr3A 93.396 106 5 2 466 571 79300808 79300911 3.400000e-34 156
7 TraesCS7A01G509600 chr3A 90.000 120 10 2 453 572 119875396 119875513 1.220000e-33 154
8 TraesCS7A01G509600 chr3B 98.334 1981 30 3 570 2549 379294090 379296068 0.000000e+00 3472
9 TraesCS7A01G509600 chr2B 98.332 1978 26 6 573 2549 25861472 25863443 0.000000e+00 3463
10 TraesCS7A01G509600 chr1A 98.281 1978 32 2 572 2549 22791528 22793503 0.000000e+00 3463
11 TraesCS7A01G509600 chr7B 98.183 1981 33 3 571 2549 1776633 1774654 0.000000e+00 3456
12 TraesCS7A01G509600 chr5D 92.453 106 8 0 467 572 84800468 84800573 4.390000e-33 152
13 TraesCS7A01G509600 chr7D 91.667 108 9 0 465 572 306456524 306456417 1.580000e-32 150
14 TraesCS7A01G509600 chr3D 92.381 105 8 0 468 572 604296127 604296023 1.580000e-32 150
15 TraesCS7A01G509600 chr3D 91.589 107 9 0 466 572 251410745 251410851 5.680000e-32 148
16 TraesCS7A01G509600 chr3D 91.589 107 9 0 466 572 502896925 502896819 5.680000e-32 148
17 TraesCS7A01G509600 chr2D 92.453 106 7 1 467 572 62406580 62406476 1.580000e-32 150
18 TraesCS7A01G509600 chr5B 86.923 130 13 4 443 571 496272954 496272828 2.640000e-30 143


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G509600 chr7A 696908326 696910874 2548 False 4708 4708 100.000 1 2549 1 chr7A.!!$F1 2548
1 TraesCS7A01G509600 chr7A 701581941 701583918 1977 False 3469 3469 98.332 573 2549 1 chr7A.!!$F2 1976
2 TraesCS7A01G509600 chr6B 660435768 660437745 1977 True 3487 3487 98.485 571 2549 1 chr6B.!!$R1 1978
3 TraesCS7A01G509600 chr6B 116269146 116271121 1975 False 3461 3461 98.281 573 2549 1 chr6B.!!$F1 1976
4 TraesCS7A01G509600 chr6A 617220908 617222872 1964 True 3478 3478 98.626 570 2533 1 chr6A.!!$R1 1963
5 TraesCS7A01G509600 chr3A 722404070 722406047 1977 True 3474 3474 98.384 573 2549 1 chr3A.!!$R1 1976
6 TraesCS7A01G509600 chr3B 379294090 379296068 1978 False 3472 3472 98.334 570 2549 1 chr3B.!!$F1 1979
7 TraesCS7A01G509600 chr2B 25861472 25863443 1971 False 3463 3463 98.332 573 2549 1 chr2B.!!$F1 1976
8 TraesCS7A01G509600 chr1A 22791528 22793503 1975 False 3463 3463 98.281 572 2549 1 chr1A.!!$F1 1977
9 TraesCS7A01G509600 chr7B 1774654 1776633 1979 True 3456 3456 98.183 571 2549 1 chr7B.!!$R1 1978

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
144 145 0.182061 TCTACGATGTAGACCGGGCT 59.818 55.0 17.85 17.85 0.0 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2041 2047 1.82361 GGCGTAAACCTCTACCAGAGT 59.176 52.381 2.71 0.0 40.72 3.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 9.336171 TCATGGACATAATTCGATAAACATTCA 57.664 29.630 0.00 0.00 0.00 2.57
62 63 9.210426 CAAACTAAAACATGTATATCTCGTTGC 57.790 33.333 0.00 0.00 0.00 4.17
63 64 8.487313 AACTAAAACATGTATATCTCGTTGCA 57.513 30.769 0.00 0.00 0.00 4.08
64 65 8.487313 ACTAAAACATGTATATCTCGTTGCAA 57.513 30.769 0.00 0.00 0.00 4.08
65 66 8.388103 ACTAAAACATGTATATCTCGTTGCAAC 58.612 33.333 19.89 19.89 0.00 4.17
66 67 6.735678 AAACATGTATATCTCGTTGCAACA 57.264 33.333 28.01 14.60 0.00 3.33
67 68 5.718649 ACATGTATATCTCGTTGCAACAC 57.281 39.130 28.01 16.93 0.00 3.32
68 69 5.175127 ACATGTATATCTCGTTGCAACACA 58.825 37.500 28.01 21.54 0.00 3.72
69 70 5.817296 ACATGTATATCTCGTTGCAACACAT 59.183 36.000 28.01 22.65 0.00 3.21
70 71 5.717038 TGTATATCTCGTTGCAACACATG 57.283 39.130 28.01 12.62 0.00 3.21
71 72 4.570369 TGTATATCTCGTTGCAACACATGG 59.430 41.667 28.01 12.25 0.00 3.66
72 73 1.167851 ATCTCGTTGCAACACATGGG 58.832 50.000 28.01 12.61 0.00 4.00
73 74 1.081242 CTCGTTGCAACACATGGGC 60.081 57.895 28.01 0.00 0.00 5.36
74 75 1.794151 CTCGTTGCAACACATGGGCA 61.794 55.000 28.01 0.00 35.41 5.36
75 76 1.177895 TCGTTGCAACACATGGGCAT 61.178 50.000 28.01 0.00 37.39 4.40
76 77 0.319727 CGTTGCAACACATGGGCATT 60.320 50.000 28.01 0.00 37.39 3.56
77 78 1.149987 GTTGCAACACATGGGCATTG 58.850 50.000 24.52 0.00 37.39 2.82
78 79 0.757512 TTGCAACACATGGGCATTGT 59.242 45.000 0.00 0.00 37.39 2.71
79 80 0.317799 TGCAACACATGGGCATTGTC 59.682 50.000 0.00 0.00 31.58 3.18
80 81 0.390209 GCAACACATGGGCATTGTCC 60.390 55.000 0.00 0.00 0.00 4.02
81 82 1.259609 CAACACATGGGCATTGTCCT 58.740 50.000 9.08 0.00 0.00 3.85
82 83 2.445427 CAACACATGGGCATTGTCCTA 58.555 47.619 9.08 0.00 0.00 2.94
83 84 3.025978 CAACACATGGGCATTGTCCTAT 58.974 45.455 9.08 0.00 0.00 2.57
84 85 4.206375 CAACACATGGGCATTGTCCTATA 58.794 43.478 9.08 0.00 0.00 1.31
85 86 4.729552 ACACATGGGCATTGTCCTATAT 57.270 40.909 9.08 0.00 0.00 0.86
86 87 5.841267 ACACATGGGCATTGTCCTATATA 57.159 39.130 9.08 0.00 0.00 0.86
87 88 5.809001 ACACATGGGCATTGTCCTATATAG 58.191 41.667 9.08 2.46 0.00 1.31
88 89 5.547666 ACACATGGGCATTGTCCTATATAGA 59.452 40.000 11.53 0.00 0.00 1.98
89 90 6.111382 CACATGGGCATTGTCCTATATAGAG 58.889 44.000 11.53 1.96 0.00 2.43
90 91 6.025539 ACATGGGCATTGTCCTATATAGAGA 58.974 40.000 11.53 4.30 0.00 3.10
91 92 6.501805 ACATGGGCATTGTCCTATATAGAGAA 59.498 38.462 11.53 3.33 0.00 2.87
92 93 7.017551 ACATGGGCATTGTCCTATATAGAGAAA 59.982 37.037 11.53 2.87 0.00 2.52
93 94 7.387265 TGGGCATTGTCCTATATAGAGAAAA 57.613 36.000 11.53 8.43 0.00 2.29
94 95 7.453393 TGGGCATTGTCCTATATAGAGAAAAG 58.547 38.462 11.53 1.31 0.00 2.27
95 96 7.292356 TGGGCATTGTCCTATATAGAGAAAAGA 59.708 37.037 11.53 0.00 0.00 2.52
96 97 7.821846 GGGCATTGTCCTATATAGAGAAAAGAG 59.178 40.741 11.53 6.65 0.00 2.85
97 98 8.371699 GGCATTGTCCTATATAGAGAAAAGAGT 58.628 37.037 11.53 0.00 0.00 3.24
134 135 9.557061 TCATATTTCTGTAGTAGTCTACGATGT 57.443 33.333 4.34 0.00 46.70 3.06
138 139 8.417780 TTTCTGTAGTAGTCTACGATGTAGAC 57.582 38.462 23.13 23.13 46.70 2.59
139 140 6.511416 TCTGTAGTAGTCTACGATGTAGACC 58.489 44.000 25.57 15.55 46.70 3.85
140 141 5.284864 TGTAGTAGTCTACGATGTAGACCG 58.715 45.833 25.57 0.82 46.70 4.79
141 142 3.726607 AGTAGTCTACGATGTAGACCGG 58.273 50.000 25.57 0.00 43.61 5.28
142 143 1.964552 AGTCTACGATGTAGACCGGG 58.035 55.000 25.57 0.00 43.61 5.73
143 144 0.310232 GTCTACGATGTAGACCGGGC 59.690 60.000 21.04 0.52 38.33 6.13
144 145 0.182061 TCTACGATGTAGACCGGGCT 59.818 55.000 17.85 17.85 0.00 5.19
145 146 0.592148 CTACGATGTAGACCGGGCTC 59.408 60.000 16.98 6.42 0.00 4.70
146 147 0.182061 TACGATGTAGACCGGGCTCT 59.818 55.000 16.98 6.42 0.00 4.09
147 148 1.102222 ACGATGTAGACCGGGCTCTC 61.102 60.000 16.98 9.72 0.00 3.20
148 149 0.820074 CGATGTAGACCGGGCTCTCT 60.820 60.000 16.98 5.01 0.00 3.10
149 150 0.955905 GATGTAGACCGGGCTCTCTC 59.044 60.000 16.98 4.86 0.00 3.20
150 151 0.553819 ATGTAGACCGGGCTCTCTCT 59.446 55.000 16.98 3.60 0.00 3.10
151 152 0.331954 TGTAGACCGGGCTCTCTCTT 59.668 55.000 16.98 0.00 0.00 2.85
152 153 1.272536 TGTAGACCGGGCTCTCTCTTT 60.273 52.381 16.98 0.00 0.00 2.52
153 154 1.826096 GTAGACCGGGCTCTCTCTTTT 59.174 52.381 16.98 0.00 0.00 2.27
154 155 0.610687 AGACCGGGCTCTCTCTTTTG 59.389 55.000 2.12 0.00 0.00 2.44
155 156 0.391793 GACCGGGCTCTCTCTTTTGG 60.392 60.000 6.32 0.00 0.00 3.28
156 157 1.128188 ACCGGGCTCTCTCTTTTGGT 61.128 55.000 6.32 0.00 0.00 3.67
157 158 0.902531 CCGGGCTCTCTCTTTTGGTA 59.097 55.000 0.00 0.00 0.00 3.25
158 159 1.405661 CCGGGCTCTCTCTTTTGGTAC 60.406 57.143 0.00 0.00 0.00 3.34
159 160 1.275291 CGGGCTCTCTCTTTTGGTACA 59.725 52.381 0.00 0.00 0.00 2.90
175 176 5.652994 TGGTACAATAAAATTGGGCAGAC 57.347 39.130 4.78 0.00 31.92 3.51
176 177 4.464597 TGGTACAATAAAATTGGGCAGACC 59.535 41.667 4.78 0.00 35.35 3.85
177 178 4.709886 GGTACAATAAAATTGGGCAGACCT 59.290 41.667 0.00 0.00 41.11 3.85
178 179 5.186992 GGTACAATAAAATTGGGCAGACCTT 59.813 40.000 0.00 0.00 41.11 3.50
179 180 5.823861 ACAATAAAATTGGGCAGACCTTT 57.176 34.783 0.00 0.00 41.11 3.11
180 181 6.186420 ACAATAAAATTGGGCAGACCTTTT 57.814 33.333 0.00 0.00 41.11 2.27
181 182 7.309770 ACAATAAAATTGGGCAGACCTTTTA 57.690 32.000 0.00 0.00 41.11 1.52
182 183 7.917003 ACAATAAAATTGGGCAGACCTTTTAT 58.083 30.769 6.49 6.49 39.43 1.40
183 184 9.041354 ACAATAAAATTGGGCAGACCTTTTATA 57.959 29.630 11.14 1.49 38.02 0.98
184 185 9.533253 CAATAAAATTGGGCAGACCTTTTATAG 57.467 33.333 11.14 0.00 38.02 1.31
206 207 8.966069 ATAGGTCAAGTTTCTATTTTAGCCTC 57.034 34.615 0.00 0.00 0.00 4.70
207 208 5.875359 AGGTCAAGTTTCTATTTTAGCCTCG 59.125 40.000 0.00 0.00 0.00 4.63
208 209 5.447413 GGTCAAGTTTCTATTTTAGCCTCGC 60.447 44.000 0.00 0.00 0.00 5.03
209 210 4.634443 TCAAGTTTCTATTTTAGCCTCGCC 59.366 41.667 0.00 0.00 0.00 5.54
210 211 3.195661 AGTTTCTATTTTAGCCTCGCCG 58.804 45.455 0.00 0.00 0.00 6.46
211 212 1.578583 TTCTATTTTAGCCTCGCCGC 58.421 50.000 0.00 0.00 0.00 6.53
212 213 0.596600 TCTATTTTAGCCTCGCCGCG 60.597 55.000 6.39 6.39 0.00 6.46
213 214 1.557443 CTATTTTAGCCTCGCCGCGG 61.557 60.000 24.05 24.05 0.00 6.46
226 227 4.451150 CGCGGCCTCCAACTGCTA 62.451 66.667 0.00 0.00 37.27 3.49
227 228 2.820037 GCGGCCTCCAACTGCTAC 60.820 66.667 0.00 0.00 36.45 3.58
228 229 2.982130 CGGCCTCCAACTGCTACT 59.018 61.111 0.00 0.00 0.00 2.57
229 230 1.153549 CGGCCTCCAACTGCTACTC 60.154 63.158 0.00 0.00 0.00 2.59
230 231 1.222113 GGCCTCCAACTGCTACTCC 59.778 63.158 0.00 0.00 0.00 3.85
231 232 1.222113 GCCTCCAACTGCTACTCCC 59.778 63.158 0.00 0.00 0.00 4.30
232 233 1.268283 GCCTCCAACTGCTACTCCCT 61.268 60.000 0.00 0.00 0.00 4.20
233 234 1.280457 CCTCCAACTGCTACTCCCTT 58.720 55.000 0.00 0.00 0.00 3.95
234 235 2.467880 CCTCCAACTGCTACTCCCTTA 58.532 52.381 0.00 0.00 0.00 2.69
235 236 2.838202 CCTCCAACTGCTACTCCCTTAA 59.162 50.000 0.00 0.00 0.00 1.85
236 237 3.456277 CCTCCAACTGCTACTCCCTTAAT 59.544 47.826 0.00 0.00 0.00 1.40
237 238 4.080299 CCTCCAACTGCTACTCCCTTAATT 60.080 45.833 0.00 0.00 0.00 1.40
238 239 5.501156 CTCCAACTGCTACTCCCTTAATTT 58.499 41.667 0.00 0.00 0.00 1.82
239 240 5.887754 TCCAACTGCTACTCCCTTAATTTT 58.112 37.500 0.00 0.00 0.00 1.82
240 241 7.023171 TCCAACTGCTACTCCCTTAATTTTA 57.977 36.000 0.00 0.00 0.00 1.52
241 242 7.639378 TCCAACTGCTACTCCCTTAATTTTAT 58.361 34.615 0.00 0.00 0.00 1.40
242 243 8.774183 TCCAACTGCTACTCCCTTAATTTTATA 58.226 33.333 0.00 0.00 0.00 0.98
243 244 8.837389 CCAACTGCTACTCCCTTAATTTTATAC 58.163 37.037 0.00 0.00 0.00 1.47
244 245 9.614792 CAACTGCTACTCCCTTAATTTTATACT 57.385 33.333 0.00 0.00 0.00 2.12
247 248 9.930693 CTGCTACTCCCTTAATTTTATACTAGG 57.069 37.037 0.00 0.00 0.00 3.02
248 249 8.877195 TGCTACTCCCTTAATTTTATACTAGGG 58.123 37.037 0.00 0.00 43.01 3.53
249 250 9.097946 GCTACTCCCTTAATTTTATACTAGGGA 57.902 37.037 7.42 7.42 46.87 4.20
254 255 9.097946 TCCCTTAATTTTATACTAGGGAGTAGC 57.902 37.037 0.00 0.00 44.82 3.58
255 256 8.877195 CCCTTAATTTTATACTAGGGAGTAGCA 58.123 37.037 0.00 0.00 44.13 3.49
256 257 9.930693 CCTTAATTTTATACTAGGGAGTAGCAG 57.069 37.037 0.00 0.00 41.50 4.24
267 268 8.866970 ACTAGGGAGTAGCAGTATTAGTTATC 57.133 38.462 0.00 0.00 32.65 1.75
268 269 6.821031 AGGGAGTAGCAGTATTAGTTATCG 57.179 41.667 0.00 0.00 0.00 2.92
269 270 5.183522 AGGGAGTAGCAGTATTAGTTATCGC 59.816 44.000 0.00 0.00 0.00 4.58
270 271 5.183522 GGGAGTAGCAGTATTAGTTATCGCT 59.816 44.000 0.00 0.00 0.00 4.93
271 272 6.316319 GGAGTAGCAGTATTAGTTATCGCTC 58.684 44.000 0.00 0.00 0.00 5.03
272 273 6.072618 GGAGTAGCAGTATTAGTTATCGCTCA 60.073 42.308 0.00 0.00 0.00 4.26
273 274 7.273320 AGTAGCAGTATTAGTTATCGCTCAA 57.727 36.000 0.00 0.00 0.00 3.02
274 275 7.364200 AGTAGCAGTATTAGTTATCGCTCAAG 58.636 38.462 0.00 0.00 0.00 3.02
275 276 4.985409 AGCAGTATTAGTTATCGCTCAAGC 59.015 41.667 0.00 0.00 37.78 4.01
276 277 4.150804 GCAGTATTAGTTATCGCTCAAGCC 59.849 45.833 0.00 0.00 37.91 4.35
277 278 5.289595 CAGTATTAGTTATCGCTCAAGCCA 58.710 41.667 0.00 0.00 37.91 4.75
278 279 5.928839 CAGTATTAGTTATCGCTCAAGCCAT 59.071 40.000 0.00 0.00 37.91 4.40
279 280 7.090808 CAGTATTAGTTATCGCTCAAGCCATA 58.909 38.462 0.00 0.00 37.91 2.74
280 281 7.598869 CAGTATTAGTTATCGCTCAAGCCATAA 59.401 37.037 0.00 0.00 37.91 1.90
281 282 8.148351 AGTATTAGTTATCGCTCAAGCCATAAA 58.852 33.333 4.02 0.00 36.24 1.40
282 283 7.801716 ATTAGTTATCGCTCAAGCCATAAAA 57.198 32.000 4.02 0.00 36.24 1.52
283 284 7.801716 TTAGTTATCGCTCAAGCCATAAAAT 57.198 32.000 4.02 0.50 36.24 1.82
284 285 8.896320 TTAGTTATCGCTCAAGCCATAAAATA 57.104 30.769 4.02 0.00 36.24 1.40
285 286 7.986085 AGTTATCGCTCAAGCCATAAAATAT 57.014 32.000 4.02 0.00 36.24 1.28
287 288 9.155975 AGTTATCGCTCAAGCCATAAAATATAG 57.844 33.333 4.02 0.00 36.24 1.31
288 289 5.862924 TCGCTCAAGCCATAAAATATAGC 57.137 39.130 0.00 0.00 37.91 2.97
289 290 5.551233 TCGCTCAAGCCATAAAATATAGCT 58.449 37.500 0.00 0.00 37.91 3.32
290 291 6.697395 TCGCTCAAGCCATAAAATATAGCTA 58.303 36.000 0.00 0.00 37.91 3.32
291 292 6.813649 TCGCTCAAGCCATAAAATATAGCTAG 59.186 38.462 0.00 0.00 37.91 3.42
292 293 6.813649 CGCTCAAGCCATAAAATATAGCTAGA 59.186 38.462 0.00 0.00 37.91 2.43
293 294 7.493971 CGCTCAAGCCATAAAATATAGCTAGAT 59.506 37.037 0.00 0.00 37.91 1.98
294 295 8.610896 GCTCAAGCCATAAAATATAGCTAGATG 58.389 37.037 0.69 0.00 32.39 2.90
295 296 8.498054 TCAAGCCATAAAATATAGCTAGATGC 57.502 34.615 0.69 0.00 43.29 3.91
296 297 8.102676 TCAAGCCATAAAATATAGCTAGATGCA 58.897 33.333 0.69 0.00 45.94 3.96
297 298 8.900781 CAAGCCATAAAATATAGCTAGATGCAT 58.099 33.333 0.00 0.00 45.94 3.96
298 299 8.674263 AGCCATAAAATATAGCTAGATGCATC 57.326 34.615 19.37 19.37 45.94 3.91
299 300 7.718753 AGCCATAAAATATAGCTAGATGCATCC 59.281 37.037 23.06 8.18 45.94 3.51
300 301 7.500227 GCCATAAAATATAGCTAGATGCATCCA 59.500 37.037 23.06 9.05 45.94 3.41
301 302 9.570468 CCATAAAATATAGCTAGATGCATCCAT 57.430 33.333 23.06 8.39 45.94 3.41
305 306 9.524496 AAAATATAGCTAGATGCATCCATTTCA 57.476 29.630 23.06 5.10 45.94 2.69
306 307 9.524496 AAATATAGCTAGATGCATCCATTTCAA 57.476 29.630 23.06 5.25 45.94 2.69
307 308 6.814506 ATAGCTAGATGCATCCATTTCAAC 57.185 37.500 23.06 4.73 45.94 3.18
308 309 3.562973 AGCTAGATGCATCCATTTCAACG 59.437 43.478 23.06 0.00 45.94 4.10
309 310 3.561310 GCTAGATGCATCCATTTCAACGA 59.439 43.478 23.06 0.00 42.31 3.85
310 311 4.553547 GCTAGATGCATCCATTTCAACGAC 60.554 45.833 23.06 0.00 42.31 4.34
311 312 3.346315 AGATGCATCCATTTCAACGACA 58.654 40.909 23.06 0.00 0.00 4.35
312 313 3.758023 AGATGCATCCATTTCAACGACAA 59.242 39.130 23.06 0.00 0.00 3.18
313 314 3.998099 TGCATCCATTTCAACGACAAA 57.002 38.095 0.00 0.00 0.00 2.83
314 315 4.517952 TGCATCCATTTCAACGACAAAT 57.482 36.364 0.00 0.00 0.00 2.32
315 316 5.635417 TGCATCCATTTCAACGACAAATA 57.365 34.783 0.00 0.00 0.00 1.40
316 317 6.018589 TGCATCCATTTCAACGACAAATAA 57.981 33.333 0.00 0.00 0.00 1.40
317 318 6.629128 TGCATCCATTTCAACGACAAATAAT 58.371 32.000 0.00 0.00 0.00 1.28
318 319 7.766283 TGCATCCATTTCAACGACAAATAATA 58.234 30.769 0.00 0.00 0.00 0.98
319 320 8.412456 TGCATCCATTTCAACGACAAATAATAT 58.588 29.630 0.00 0.00 0.00 1.28
320 321 8.905702 GCATCCATTTCAACGACAAATAATATC 58.094 33.333 0.00 0.00 0.00 1.63
321 322 9.949174 CATCCATTTCAACGACAAATAATATCA 57.051 29.630 0.00 0.00 0.00 2.15
323 324 9.389755 TCCATTTCAACGACAAATAATATCAGA 57.610 29.630 0.00 0.00 0.00 3.27
324 325 9.438291 CCATTTCAACGACAAATAATATCAGAC 57.562 33.333 0.00 0.00 0.00 3.51
325 326 9.147364 CATTTCAACGACAAATAATATCAGACG 57.853 33.333 0.00 0.00 0.00 4.18
326 327 6.822073 TCAACGACAAATAATATCAGACGG 57.178 37.500 0.00 0.00 0.00 4.79
327 328 6.566141 TCAACGACAAATAATATCAGACGGA 58.434 36.000 0.00 0.00 0.00 4.69
328 329 6.695713 TCAACGACAAATAATATCAGACGGAG 59.304 38.462 0.00 0.00 0.00 4.63
329 330 6.387041 ACGACAAATAATATCAGACGGAGA 57.613 37.500 0.00 0.00 0.00 3.71
330 331 6.439599 ACGACAAATAATATCAGACGGAGAG 58.560 40.000 0.00 0.00 0.00 3.20
331 332 6.262496 ACGACAAATAATATCAGACGGAGAGA 59.738 38.462 0.00 0.00 0.00 3.10
332 333 6.799441 CGACAAATAATATCAGACGGAGAGAG 59.201 42.308 0.00 0.00 0.00 3.20
333 334 7.520776 CGACAAATAATATCAGACGGAGAGAGT 60.521 40.741 0.00 0.00 0.00 3.24
334 335 8.693120 ACAAATAATATCAGACGGAGAGAGTA 57.307 34.615 0.00 0.00 0.00 2.59
335 336 8.569641 ACAAATAATATCAGACGGAGAGAGTAC 58.430 37.037 0.00 0.00 0.00 2.73
336 337 8.788806 CAAATAATATCAGACGGAGAGAGTACT 58.211 37.037 0.00 0.00 0.00 2.73
337 338 7.915293 ATAATATCAGACGGAGAGAGTACTG 57.085 40.000 0.00 0.00 0.00 2.74
338 339 1.740297 TCAGACGGAGAGAGTACTGC 58.260 55.000 0.00 0.00 0.00 4.40
339 340 1.003233 TCAGACGGAGAGAGTACTGCA 59.997 52.381 0.00 0.00 0.00 4.41
340 341 1.813178 CAGACGGAGAGAGTACTGCAA 59.187 52.381 0.00 0.00 0.00 4.08
341 342 2.425312 CAGACGGAGAGAGTACTGCAAT 59.575 50.000 0.00 0.00 0.00 3.56
342 343 3.093057 AGACGGAGAGAGTACTGCAATT 58.907 45.455 0.00 0.00 0.00 2.32
343 344 3.119316 AGACGGAGAGAGTACTGCAATTG 60.119 47.826 0.00 0.00 0.00 2.32
344 345 2.563179 ACGGAGAGAGTACTGCAATTGT 59.437 45.455 0.00 0.00 0.00 2.71
345 346 3.762288 ACGGAGAGAGTACTGCAATTGTA 59.238 43.478 0.00 0.89 0.00 2.41
346 347 4.402793 ACGGAGAGAGTACTGCAATTGTAT 59.597 41.667 0.00 0.00 0.00 2.29
347 348 5.593095 ACGGAGAGAGTACTGCAATTGTATA 59.407 40.000 0.00 0.00 0.00 1.47
348 349 6.265649 ACGGAGAGAGTACTGCAATTGTATAT 59.734 38.462 0.00 0.00 0.00 0.86
349 350 7.148641 CGGAGAGAGTACTGCAATTGTATATT 58.851 38.462 0.00 0.00 0.00 1.28
350 351 7.653713 CGGAGAGAGTACTGCAATTGTATATTT 59.346 37.037 0.00 0.00 0.00 1.40
351 352 9.331282 GGAGAGAGTACTGCAATTGTATATTTT 57.669 33.333 0.00 0.00 0.00 1.82
377 378 8.100508 AGAACTAAGTTTAAGGACTGATTTGC 57.899 34.615 0.00 0.00 0.00 3.68
378 379 7.719633 AGAACTAAGTTTAAGGACTGATTTGCA 59.280 33.333 0.00 0.00 0.00 4.08
379 380 7.203255 ACTAAGTTTAAGGACTGATTTGCAC 57.797 36.000 0.00 0.00 0.00 4.57
380 381 5.453567 AAGTTTAAGGACTGATTTGCACC 57.546 39.130 0.00 0.00 0.00 5.01
381 382 4.729868 AGTTTAAGGACTGATTTGCACCT 58.270 39.130 0.00 0.00 0.00 4.00
382 383 5.140454 AGTTTAAGGACTGATTTGCACCTT 58.860 37.500 7.56 7.56 42.49 3.50
383 384 5.598417 AGTTTAAGGACTGATTTGCACCTTT 59.402 36.000 7.71 0.00 40.68 3.11
384 385 5.705609 TTAAGGACTGATTTGCACCTTTC 57.294 39.130 7.71 0.00 40.68 2.62
385 386 2.519013 AGGACTGATTTGCACCTTTCC 58.481 47.619 0.00 0.00 0.00 3.13
386 387 2.158475 AGGACTGATTTGCACCTTTCCA 60.158 45.455 0.00 0.00 0.00 3.53
387 388 2.627699 GGACTGATTTGCACCTTTCCAA 59.372 45.455 0.00 0.00 0.00 3.53
388 389 3.259123 GGACTGATTTGCACCTTTCCAAT 59.741 43.478 0.00 0.00 0.00 3.16
389 390 4.462483 GGACTGATTTGCACCTTTCCAATA 59.538 41.667 0.00 0.00 0.00 1.90
390 391 5.047377 GGACTGATTTGCACCTTTCCAATAA 60.047 40.000 0.00 0.00 0.00 1.40
391 392 6.351286 GGACTGATTTGCACCTTTCCAATAAT 60.351 38.462 0.00 0.00 0.00 1.28
392 393 7.008021 ACTGATTTGCACCTTTCCAATAATT 57.992 32.000 0.00 0.00 0.00 1.40
393 394 7.452562 ACTGATTTGCACCTTTCCAATAATTT 58.547 30.769 0.00 0.00 0.00 1.82
394 395 7.603784 ACTGATTTGCACCTTTCCAATAATTTC 59.396 33.333 0.00 0.00 0.00 2.17
395 396 7.448420 TGATTTGCACCTTTCCAATAATTTCA 58.552 30.769 0.00 0.00 0.00 2.69
396 397 7.387397 TGATTTGCACCTTTCCAATAATTTCAC 59.613 33.333 0.00 0.00 0.00 3.18
397 398 4.804108 TGCACCTTTCCAATAATTTCACG 58.196 39.130 0.00 0.00 0.00 4.35
398 399 4.173256 GCACCTTTCCAATAATTTCACGG 58.827 43.478 0.00 0.00 0.00 4.94
399 400 4.743493 CACCTTTCCAATAATTTCACGGG 58.257 43.478 0.00 0.00 0.00 5.28
400 401 4.219725 CACCTTTCCAATAATTTCACGGGT 59.780 41.667 0.00 0.00 0.00 5.28
401 402 4.219725 ACCTTTCCAATAATTTCACGGGTG 59.780 41.667 0.00 0.00 0.00 4.61
402 403 3.859411 TTCCAATAATTTCACGGGTGC 57.141 42.857 0.00 0.00 0.00 5.01
403 404 2.796557 TCCAATAATTTCACGGGTGCA 58.203 42.857 0.00 0.00 0.00 4.57
404 405 3.360867 TCCAATAATTTCACGGGTGCAT 58.639 40.909 0.00 0.00 0.00 3.96
405 406 3.766591 TCCAATAATTTCACGGGTGCATT 59.233 39.130 0.00 0.00 0.00 3.56
406 407 4.221703 TCCAATAATTTCACGGGTGCATTT 59.778 37.500 0.00 0.00 0.00 2.32
407 408 4.934602 CCAATAATTTCACGGGTGCATTTT 59.065 37.500 0.00 0.00 0.00 1.82
408 409 6.071334 TCCAATAATTTCACGGGTGCATTTTA 60.071 34.615 0.00 0.00 0.00 1.52
409 410 6.035542 CCAATAATTTCACGGGTGCATTTTAC 59.964 38.462 0.00 0.00 0.00 2.01
410 411 4.864704 AATTTCACGGGTGCATTTTACT 57.135 36.364 0.00 0.00 0.00 2.24
411 412 3.907894 TTTCACGGGTGCATTTTACTC 57.092 42.857 0.00 0.00 0.00 2.59
412 413 2.851263 TCACGGGTGCATTTTACTCT 57.149 45.000 0.00 0.00 0.00 3.24
413 414 3.134574 TCACGGGTGCATTTTACTCTT 57.865 42.857 0.00 0.00 0.00 2.85
414 415 4.274602 TCACGGGTGCATTTTACTCTTA 57.725 40.909 0.00 0.00 0.00 2.10
415 416 4.643463 TCACGGGTGCATTTTACTCTTAA 58.357 39.130 0.00 0.00 0.00 1.85
416 417 5.064558 TCACGGGTGCATTTTACTCTTAAA 58.935 37.500 0.00 0.00 0.00 1.52
417 418 5.708230 TCACGGGTGCATTTTACTCTTAAAT 59.292 36.000 0.00 0.00 0.00 1.40
418 419 6.207810 TCACGGGTGCATTTTACTCTTAAATT 59.792 34.615 0.00 0.00 0.00 1.82
419 420 7.390996 TCACGGGTGCATTTTACTCTTAAATTA 59.609 33.333 0.00 0.00 0.00 1.40
420 421 8.024285 CACGGGTGCATTTTACTCTTAAATTAA 58.976 33.333 0.00 0.00 0.00 1.40
421 422 8.745590 ACGGGTGCATTTTACTCTTAAATTAAT 58.254 29.630 0.00 0.00 0.00 1.40
422 423 9.019764 CGGGTGCATTTTACTCTTAAATTAATG 57.980 33.333 0.00 0.00 0.00 1.90
423 424 9.869757 GGGTGCATTTTACTCTTAAATTAATGT 57.130 29.630 0.00 0.00 0.00 2.71
426 427 9.868277 TGCATTTTACTCTTAAATTAATGTGGG 57.132 29.630 0.00 0.00 0.00 4.61
432 433 9.528489 TTACTCTTAAATTAATGTGGGAAAGCT 57.472 29.630 0.00 0.00 0.00 3.74
434 435 9.178758 ACTCTTAAATTAATGTGGGAAAGCTAG 57.821 33.333 0.00 0.00 0.00 3.42
435 436 9.396022 CTCTTAAATTAATGTGGGAAAGCTAGA 57.604 33.333 0.00 0.00 0.00 2.43
436 437 9.396022 TCTTAAATTAATGTGGGAAAGCTAGAG 57.604 33.333 0.00 0.00 0.00 2.43
437 438 9.396022 CTTAAATTAATGTGGGAAAGCTAGAGA 57.604 33.333 0.00 0.00 0.00 3.10
438 439 7.872113 AAATTAATGTGGGAAAGCTAGAGAG 57.128 36.000 0.00 0.00 0.00 3.20
439 440 3.922171 AATGTGGGAAAGCTAGAGAGG 57.078 47.619 0.00 0.00 0.00 3.69
440 441 2.327325 TGTGGGAAAGCTAGAGAGGT 57.673 50.000 0.00 0.00 33.85 3.85
441 442 1.902508 TGTGGGAAAGCTAGAGAGGTG 59.097 52.381 0.00 0.00 32.39 4.00
442 443 2.180276 GTGGGAAAGCTAGAGAGGTGA 58.820 52.381 0.00 0.00 32.39 4.02
443 444 2.093921 GTGGGAAAGCTAGAGAGGTGAC 60.094 54.545 0.00 0.00 32.39 3.67
444 445 1.483004 GGGAAAGCTAGAGAGGTGACC 59.517 57.143 0.00 0.00 32.39 4.02
445 446 2.180276 GGAAAGCTAGAGAGGTGACCA 58.820 52.381 3.63 0.00 32.39 4.02
446 447 2.769095 GGAAAGCTAGAGAGGTGACCAT 59.231 50.000 3.63 0.00 32.39 3.55
447 448 3.961408 GGAAAGCTAGAGAGGTGACCATA 59.039 47.826 3.63 0.00 32.39 2.74
448 449 4.591072 GGAAAGCTAGAGAGGTGACCATAT 59.409 45.833 3.63 0.00 32.39 1.78
449 450 5.279256 GGAAAGCTAGAGAGGTGACCATATC 60.279 48.000 3.63 0.00 32.39 1.63
450 451 4.461450 AGCTAGAGAGGTGACCATATCA 57.539 45.455 3.63 0.00 33.79 2.15
451 452 5.009436 AGCTAGAGAGGTGACCATATCAT 57.991 43.478 3.63 0.00 40.28 2.45
452 453 5.016173 AGCTAGAGAGGTGACCATATCATC 58.984 45.833 3.63 0.00 40.28 2.92
453 454 4.769488 GCTAGAGAGGTGACCATATCATCA 59.231 45.833 3.63 0.00 41.42 3.07
454 455 5.244851 GCTAGAGAGGTGACCATATCATCAA 59.755 44.000 3.63 0.00 41.42 2.57
455 456 5.543507 AGAGAGGTGACCATATCATCAAC 57.456 43.478 3.63 0.00 41.42 3.18
456 457 4.964897 AGAGAGGTGACCATATCATCAACA 59.035 41.667 3.63 0.00 41.42 3.33
457 458 5.605908 AGAGAGGTGACCATATCATCAACAT 59.394 40.000 3.63 0.00 41.42 2.71
458 459 6.784473 AGAGAGGTGACCATATCATCAACATA 59.216 38.462 3.63 0.00 41.42 2.29
459 460 6.763355 AGAGGTGACCATATCATCAACATAC 58.237 40.000 3.63 0.00 41.42 2.39
460 461 6.327365 AGAGGTGACCATATCATCAACATACA 59.673 38.462 3.63 0.00 41.42 2.29
461 462 6.899089 AGGTGACCATATCATCAACATACAA 58.101 36.000 3.63 0.00 41.42 2.41
462 463 6.994496 AGGTGACCATATCATCAACATACAAG 59.006 38.462 3.63 0.00 41.42 3.16
463 464 6.767902 GGTGACCATATCATCAACATACAAGT 59.232 38.462 0.00 0.00 40.28 3.16
464 465 7.931407 GGTGACCATATCATCAACATACAAGTA 59.069 37.037 0.00 0.00 40.28 2.24
465 466 9.325198 GTGACCATATCATCAACATACAAGTAA 57.675 33.333 0.00 0.00 40.28 2.24
466 467 9.898152 TGACCATATCATCAACATACAAGTAAA 57.102 29.630 0.00 0.00 29.99 2.01
507 508 9.484806 AAAGAATGTAAGATTCCCATTTCATCT 57.515 29.630 0.00 0.00 0.00 2.90
508 509 9.484806 AAGAATGTAAGATTCCCATTTCATCTT 57.515 29.630 0.00 0.00 39.89 2.40
509 510 8.910944 AGAATGTAAGATTCCCATTTCATCTTG 58.089 33.333 4.27 0.00 37.72 3.02
510 511 6.455360 TGTAAGATTCCCATTTCATCTTGC 57.545 37.500 4.27 3.70 37.72 4.01
511 512 6.189859 TGTAAGATTCCCATTTCATCTTGCT 58.810 36.000 9.61 0.00 39.24 3.91
512 513 6.664816 TGTAAGATTCCCATTTCATCTTGCTT 59.335 34.615 9.61 0.00 39.24 3.91
513 514 6.616237 AAGATTCCCATTTCATCTTGCTTT 57.384 33.333 0.00 0.00 36.18 3.51
514 515 6.616237 AGATTCCCATTTCATCTTGCTTTT 57.384 33.333 0.00 0.00 0.00 2.27
515 516 6.637657 AGATTCCCATTTCATCTTGCTTTTC 58.362 36.000 0.00 0.00 0.00 2.29
516 517 5.804944 TTCCCATTTCATCTTGCTTTTCA 57.195 34.783 0.00 0.00 0.00 2.69
517 518 5.138125 TCCCATTTCATCTTGCTTTTCAC 57.862 39.130 0.00 0.00 0.00 3.18
518 519 4.834496 TCCCATTTCATCTTGCTTTTCACT 59.166 37.500 0.00 0.00 0.00 3.41
519 520 6.009589 TCCCATTTCATCTTGCTTTTCACTA 58.990 36.000 0.00 0.00 0.00 2.74
520 521 6.664816 TCCCATTTCATCTTGCTTTTCACTAT 59.335 34.615 0.00 0.00 0.00 2.12
521 522 6.976925 CCCATTTCATCTTGCTTTTCACTATC 59.023 38.462 0.00 0.00 0.00 2.08
522 523 6.976925 CCATTTCATCTTGCTTTTCACTATCC 59.023 38.462 0.00 0.00 0.00 2.59
523 524 6.515272 TTTCATCTTGCTTTTCACTATCCC 57.485 37.500 0.00 0.00 0.00 3.85
524 525 5.441718 TCATCTTGCTTTTCACTATCCCT 57.558 39.130 0.00 0.00 0.00 4.20
525 526 5.819991 TCATCTTGCTTTTCACTATCCCTT 58.180 37.500 0.00 0.00 0.00 3.95
526 527 5.882557 TCATCTTGCTTTTCACTATCCCTTC 59.117 40.000 0.00 0.00 0.00 3.46
527 528 4.253685 TCTTGCTTTTCACTATCCCTTCG 58.746 43.478 0.00 0.00 0.00 3.79
528 529 3.695830 TGCTTTTCACTATCCCTTCGT 57.304 42.857 0.00 0.00 0.00 3.85
529 530 3.596214 TGCTTTTCACTATCCCTTCGTC 58.404 45.455 0.00 0.00 0.00 4.20
530 531 2.937149 GCTTTTCACTATCCCTTCGTCC 59.063 50.000 0.00 0.00 0.00 4.79
531 532 3.618997 GCTTTTCACTATCCCTTCGTCCA 60.619 47.826 0.00 0.00 0.00 4.02
532 533 4.575885 CTTTTCACTATCCCTTCGTCCAA 58.424 43.478 0.00 0.00 0.00 3.53
533 534 3.604875 TTCACTATCCCTTCGTCCAAC 57.395 47.619 0.00 0.00 0.00 3.77
534 535 1.829222 TCACTATCCCTTCGTCCAACC 59.171 52.381 0.00 0.00 0.00 3.77
535 536 1.831736 CACTATCCCTTCGTCCAACCT 59.168 52.381 0.00 0.00 0.00 3.50
536 537 2.236395 CACTATCCCTTCGTCCAACCTT 59.764 50.000 0.00 0.00 0.00 3.50
537 538 2.500504 ACTATCCCTTCGTCCAACCTTC 59.499 50.000 0.00 0.00 0.00 3.46
538 539 0.618981 ATCCCTTCGTCCAACCTTCC 59.381 55.000 0.00 0.00 0.00 3.46
539 540 0.765135 TCCCTTCGTCCAACCTTCCA 60.765 55.000 0.00 0.00 0.00 3.53
540 541 0.328258 CCCTTCGTCCAACCTTCCAT 59.672 55.000 0.00 0.00 0.00 3.41
541 542 1.453155 CCTTCGTCCAACCTTCCATG 58.547 55.000 0.00 0.00 0.00 3.66
542 543 1.271379 CCTTCGTCCAACCTTCCATGT 60.271 52.381 0.00 0.00 0.00 3.21
543 544 2.027561 CCTTCGTCCAACCTTCCATGTA 60.028 50.000 0.00 0.00 0.00 2.29
544 545 3.370527 CCTTCGTCCAACCTTCCATGTAT 60.371 47.826 0.00 0.00 0.00 2.29
545 546 4.141801 CCTTCGTCCAACCTTCCATGTATA 60.142 45.833 0.00 0.00 0.00 1.47
546 547 5.454755 CCTTCGTCCAACCTTCCATGTATAT 60.455 44.000 0.00 0.00 0.00 0.86
547 548 6.239487 CCTTCGTCCAACCTTCCATGTATATA 60.239 42.308 0.00 0.00 0.00 0.86
548 549 6.734502 TCGTCCAACCTTCCATGTATATAA 57.265 37.500 0.00 0.00 0.00 0.98
549 550 7.311092 TCGTCCAACCTTCCATGTATATAAT 57.689 36.000 0.00 0.00 0.00 1.28
550 551 8.425237 TCGTCCAACCTTCCATGTATATAATA 57.575 34.615 0.00 0.00 0.00 0.98
551 552 8.872134 TCGTCCAACCTTCCATGTATATAATAA 58.128 33.333 0.00 0.00 0.00 1.40
552 553 9.667107 CGTCCAACCTTCCATGTATATAATAAT 57.333 33.333 0.00 0.00 0.00 1.28
1013 1016 2.354103 CGAGCTCCATGTCTTCCTCAAA 60.354 50.000 8.47 0.00 0.00 2.69
1251 1254 1.913778 TCATGCAGGTGACATGCTTT 58.086 45.000 23.05 8.04 43.71 3.51
1495 1498 7.094463 CCATTTGCAAATACTTTTGGGCATTTA 60.094 33.333 23.69 0.00 42.09 1.40
2041 2047 3.229293 TGTCATGGAAAATGTGCCTCAA 58.771 40.909 0.00 0.00 0.00 3.02
2257 2267 4.081087 GGCAAGACTTTGACATAGGTAGGA 60.081 45.833 0.00 0.00 42.21 2.94
2415 2429 4.582240 TGTTGCACTACCACATGATTTTGA 59.418 37.500 0.00 0.00 0.00 2.69
2455 2469 0.960861 GGGTTAGAGTGGCACTTGGC 60.961 60.000 22.98 9.26 43.74 4.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 9.336171 TGAATGTTTATCGAATTATGTCCATGA 57.664 29.630 0.00 0.00 0.00 3.07
36 37 9.210426 GCAACGAGATATACATGTTTTAGTTTG 57.790 33.333 2.30 0.38 0.00 2.93
37 38 8.941977 TGCAACGAGATATACATGTTTTAGTTT 58.058 29.630 2.30 0.00 0.00 2.66
38 39 8.487313 TGCAACGAGATATACATGTTTTAGTT 57.513 30.769 2.30 0.00 0.00 2.24
39 40 8.388103 GTTGCAACGAGATATACATGTTTTAGT 58.612 33.333 14.90 0.00 0.00 2.24
40 41 8.387354 TGTTGCAACGAGATATACATGTTTTAG 58.613 33.333 23.79 0.00 0.00 1.85
41 42 8.172484 GTGTTGCAACGAGATATACATGTTTTA 58.828 33.333 23.79 0.00 0.00 1.52
42 43 7.021196 GTGTTGCAACGAGATATACATGTTTT 58.979 34.615 23.79 0.00 0.00 2.43
43 44 6.148645 TGTGTTGCAACGAGATATACATGTTT 59.851 34.615 23.79 0.00 0.00 2.83
44 45 5.641636 TGTGTTGCAACGAGATATACATGTT 59.358 36.000 23.79 0.00 0.00 2.71
45 46 5.175127 TGTGTTGCAACGAGATATACATGT 58.825 37.500 23.79 2.69 0.00 3.21
46 47 5.717038 TGTGTTGCAACGAGATATACATG 57.283 39.130 23.79 0.00 0.00 3.21
47 48 5.237127 CCATGTGTTGCAACGAGATATACAT 59.763 40.000 23.79 20.76 0.00 2.29
48 49 4.570369 CCATGTGTTGCAACGAGATATACA 59.430 41.667 23.79 19.55 0.00 2.29
49 50 4.024893 CCCATGTGTTGCAACGAGATATAC 60.025 45.833 23.79 14.80 0.00 1.47
50 51 4.126437 CCCATGTGTTGCAACGAGATATA 58.874 43.478 23.79 5.47 0.00 0.86
51 52 2.945008 CCCATGTGTTGCAACGAGATAT 59.055 45.455 23.79 8.30 0.00 1.63
52 53 2.355197 CCCATGTGTTGCAACGAGATA 58.645 47.619 23.79 6.21 0.00 1.98
53 54 1.167851 CCCATGTGTTGCAACGAGAT 58.832 50.000 23.79 13.90 0.00 2.75
54 55 1.514678 GCCCATGTGTTGCAACGAGA 61.515 55.000 23.79 12.31 0.00 4.04
55 56 1.081242 GCCCATGTGTTGCAACGAG 60.081 57.895 23.79 13.07 0.00 4.18
56 57 1.177895 ATGCCCATGTGTTGCAACGA 61.178 50.000 23.79 13.78 38.69 3.85
57 58 0.319727 AATGCCCATGTGTTGCAACG 60.320 50.000 23.79 9.92 38.69 4.10
58 59 1.149987 CAATGCCCATGTGTTGCAAC 58.850 50.000 22.83 22.83 38.69 4.17
59 60 0.757512 ACAATGCCCATGTGTTGCAA 59.242 45.000 0.00 0.00 38.69 4.08
60 61 0.317799 GACAATGCCCATGTGTTGCA 59.682 50.000 0.00 0.00 39.68 4.08
61 62 0.390209 GGACAATGCCCATGTGTTGC 60.390 55.000 0.00 0.00 0.00 4.17
62 63 1.259609 AGGACAATGCCCATGTGTTG 58.740 50.000 0.00 0.00 0.00 3.33
63 64 2.897271 TAGGACAATGCCCATGTGTT 57.103 45.000 0.00 0.00 0.00 3.32
64 65 4.729552 ATATAGGACAATGCCCATGTGT 57.270 40.909 0.00 0.00 0.00 3.72
65 66 6.053632 TCTATATAGGACAATGCCCATGTG 57.946 41.667 9.89 0.00 0.00 3.21
66 67 6.025539 TCTCTATATAGGACAATGCCCATGT 58.974 40.000 9.89 0.00 0.00 3.21
67 68 6.550938 TCTCTATATAGGACAATGCCCATG 57.449 41.667 9.89 0.00 0.00 3.66
68 69 7.574021 TTTCTCTATATAGGACAATGCCCAT 57.426 36.000 9.89 0.00 0.00 4.00
69 70 7.292356 TCTTTTCTCTATATAGGACAATGCCCA 59.708 37.037 9.89 0.00 0.00 5.36
70 71 7.680730 TCTTTTCTCTATATAGGACAATGCCC 58.319 38.462 9.89 0.00 0.00 5.36
71 72 8.371699 ACTCTTTTCTCTATATAGGACAATGCC 58.628 37.037 9.89 0.00 0.00 4.40
108 109 9.557061 ACATCGTAGACTACTACAGAAATATGA 57.443 33.333 10.82 0.00 46.47 2.15
112 113 9.044150 GTCTACATCGTAGACTACTACAGAAAT 57.956 37.037 21.51 0.00 46.47 2.17
113 114 7.493971 GGTCTACATCGTAGACTACTACAGAAA 59.506 40.741 25.49 0.00 46.47 2.52
114 115 6.983307 GGTCTACATCGTAGACTACTACAGAA 59.017 42.308 25.49 0.00 46.47 3.02
115 116 6.511416 GGTCTACATCGTAGACTACTACAGA 58.489 44.000 25.49 1.21 46.47 3.41
116 117 5.401972 CGGTCTACATCGTAGACTACTACAG 59.598 48.000 25.49 10.77 46.47 2.74
117 118 5.284864 CGGTCTACATCGTAGACTACTACA 58.715 45.833 25.49 0.00 46.47 2.74
118 119 4.683781 CCGGTCTACATCGTAGACTACTAC 59.316 50.000 25.49 12.96 42.51 2.73
119 120 4.262207 CCCGGTCTACATCGTAGACTACTA 60.262 50.000 25.49 0.00 42.51 1.82
120 121 3.494048 CCCGGTCTACATCGTAGACTACT 60.494 52.174 25.49 0.00 42.51 2.57
121 122 2.805099 CCCGGTCTACATCGTAGACTAC 59.195 54.545 25.49 14.04 42.51 2.73
122 123 2.808202 GCCCGGTCTACATCGTAGACTA 60.808 54.545 25.49 0.00 42.51 2.59
123 124 1.964552 CCCGGTCTACATCGTAGACT 58.035 55.000 25.49 0.00 42.51 3.24
124 125 0.310232 GCCCGGTCTACATCGTAGAC 59.690 60.000 20.93 20.93 42.51 2.59
125 126 0.182061 AGCCCGGTCTACATCGTAGA 59.818 55.000 0.00 0.00 45.75 2.59
126 127 0.592148 GAGCCCGGTCTACATCGTAG 59.408 60.000 0.00 0.00 0.00 3.51
127 128 0.182061 AGAGCCCGGTCTACATCGTA 59.818 55.000 0.00 0.00 0.00 3.43
128 129 1.076923 AGAGCCCGGTCTACATCGT 60.077 57.895 0.00 0.00 0.00 3.73
129 130 0.820074 AGAGAGCCCGGTCTACATCG 60.820 60.000 0.00 0.00 0.00 3.84
130 131 0.955905 GAGAGAGCCCGGTCTACATC 59.044 60.000 0.00 0.00 0.00 3.06
131 132 0.553819 AGAGAGAGCCCGGTCTACAT 59.446 55.000 0.00 0.00 0.00 2.29
132 133 0.331954 AAGAGAGAGCCCGGTCTACA 59.668 55.000 0.00 0.00 0.00 2.74
133 134 1.476477 AAAGAGAGAGCCCGGTCTAC 58.524 55.000 0.00 0.00 0.00 2.59
134 135 1.825474 CAAAAGAGAGAGCCCGGTCTA 59.175 52.381 0.00 0.00 0.00 2.59
135 136 0.610687 CAAAAGAGAGAGCCCGGTCT 59.389 55.000 0.00 0.00 0.00 3.85
136 137 0.391793 CCAAAAGAGAGAGCCCGGTC 60.392 60.000 0.00 0.00 0.00 4.79
137 138 1.128188 ACCAAAAGAGAGAGCCCGGT 61.128 55.000 0.00 0.00 0.00 5.28
138 139 0.902531 TACCAAAAGAGAGAGCCCGG 59.097 55.000 0.00 0.00 0.00 5.73
139 140 1.275291 TGTACCAAAAGAGAGAGCCCG 59.725 52.381 0.00 0.00 0.00 6.13
140 141 3.418684 TTGTACCAAAAGAGAGAGCCC 57.581 47.619 0.00 0.00 0.00 5.19
141 142 7.448748 TTTTATTGTACCAAAAGAGAGAGCC 57.551 36.000 0.00 0.00 0.00 4.70
142 143 9.346725 CAATTTTATTGTACCAAAAGAGAGAGC 57.653 33.333 0.00 0.00 0.00 4.09
143 144 9.846248 CCAATTTTATTGTACCAAAAGAGAGAG 57.154 33.333 0.00 0.00 0.00 3.20
144 145 8.802267 CCCAATTTTATTGTACCAAAAGAGAGA 58.198 33.333 0.00 0.00 0.00 3.10
145 146 7.545615 GCCCAATTTTATTGTACCAAAAGAGAG 59.454 37.037 0.00 0.00 0.00 3.20
146 147 7.015682 TGCCCAATTTTATTGTACCAAAAGAGA 59.984 33.333 0.00 0.00 0.00 3.10
147 148 7.158021 TGCCCAATTTTATTGTACCAAAAGAG 58.842 34.615 0.00 0.00 0.00 2.85
148 149 7.015682 TCTGCCCAATTTTATTGTACCAAAAGA 59.984 33.333 0.00 0.00 0.00 2.52
149 150 7.117667 GTCTGCCCAATTTTATTGTACCAAAAG 59.882 37.037 0.00 0.00 0.00 2.27
150 151 6.931840 GTCTGCCCAATTTTATTGTACCAAAA 59.068 34.615 0.00 0.00 0.00 2.44
151 152 6.459923 GTCTGCCCAATTTTATTGTACCAAA 58.540 36.000 0.00 0.00 0.00 3.28
152 153 5.046950 GGTCTGCCCAATTTTATTGTACCAA 60.047 40.000 0.00 0.00 0.00 3.67
153 154 4.464597 GGTCTGCCCAATTTTATTGTACCA 59.535 41.667 0.00 0.00 0.00 3.25
154 155 4.709886 AGGTCTGCCCAATTTTATTGTACC 59.290 41.667 0.00 0.00 34.66 3.34
155 156 5.914898 AGGTCTGCCCAATTTTATTGTAC 57.085 39.130 0.00 0.00 34.66 2.90
156 157 6.926630 AAAGGTCTGCCCAATTTTATTGTA 57.073 33.333 0.00 0.00 34.66 2.41
157 158 5.823861 AAAGGTCTGCCCAATTTTATTGT 57.176 34.783 0.00 0.00 34.66 2.71
158 159 9.533253 CTATAAAAGGTCTGCCCAATTTTATTG 57.467 33.333 6.55 0.00 35.76 1.90
159 160 8.704668 CCTATAAAAGGTCTGCCCAATTTTATT 58.295 33.333 6.55 0.00 40.94 1.40
160 161 8.250143 CCTATAAAAGGTCTGCCCAATTTTAT 57.750 34.615 0.00 0.00 40.94 1.40
161 162 7.654022 CCTATAAAAGGTCTGCCCAATTTTA 57.346 36.000 0.00 0.00 40.94 1.52
162 163 6.544928 CCTATAAAAGGTCTGCCCAATTTT 57.455 37.500 0.00 0.00 40.94 1.82
181 182 7.711339 CGAGGCTAAAATAGAAACTTGACCTAT 59.289 37.037 0.00 0.00 0.00 2.57
182 183 7.039882 CGAGGCTAAAATAGAAACTTGACCTA 58.960 38.462 0.00 0.00 0.00 3.08
183 184 5.875359 CGAGGCTAAAATAGAAACTTGACCT 59.125 40.000 0.00 0.00 0.00 3.85
184 185 5.447413 GCGAGGCTAAAATAGAAACTTGACC 60.447 44.000 0.00 0.00 0.00 4.02
185 186 5.447413 GGCGAGGCTAAAATAGAAACTTGAC 60.447 44.000 0.00 0.00 0.00 3.18
186 187 4.634443 GGCGAGGCTAAAATAGAAACTTGA 59.366 41.667 0.00 0.00 0.00 3.02
187 188 4.494199 CGGCGAGGCTAAAATAGAAACTTG 60.494 45.833 0.00 0.00 0.00 3.16
188 189 3.621715 CGGCGAGGCTAAAATAGAAACTT 59.378 43.478 0.00 0.00 0.00 2.66
189 190 3.195661 CGGCGAGGCTAAAATAGAAACT 58.804 45.455 0.00 0.00 0.00 2.66
190 191 2.286242 GCGGCGAGGCTAAAATAGAAAC 60.286 50.000 12.98 0.00 0.00 2.78
191 192 1.937899 GCGGCGAGGCTAAAATAGAAA 59.062 47.619 12.98 0.00 0.00 2.52
192 193 1.578583 GCGGCGAGGCTAAAATAGAA 58.421 50.000 12.98 0.00 0.00 2.10
193 194 0.596600 CGCGGCGAGGCTAAAATAGA 60.597 55.000 19.16 0.00 0.00 1.98
194 195 1.557443 CCGCGGCGAGGCTAAAATAG 61.557 60.000 25.92 0.00 0.00 1.73
195 196 1.593209 CCGCGGCGAGGCTAAAATA 60.593 57.895 25.92 0.00 0.00 1.40
196 197 2.895372 CCGCGGCGAGGCTAAAAT 60.895 61.111 25.92 0.00 0.00 1.82
209 210 4.451150 TAGCAGTTGGAGGCCGCG 62.451 66.667 0.00 0.00 0.00 6.46
210 211 2.820037 GTAGCAGTTGGAGGCCGC 60.820 66.667 0.00 0.00 0.00 6.53
211 212 1.153549 GAGTAGCAGTTGGAGGCCG 60.154 63.158 0.00 0.00 0.00 6.13
212 213 1.222113 GGAGTAGCAGTTGGAGGCC 59.778 63.158 0.00 0.00 0.00 5.19
213 214 1.222113 GGGAGTAGCAGTTGGAGGC 59.778 63.158 0.00 0.00 0.00 4.70
214 215 1.280457 AAGGGAGTAGCAGTTGGAGG 58.720 55.000 0.00 0.00 0.00 4.30
215 216 4.762289 ATTAAGGGAGTAGCAGTTGGAG 57.238 45.455 0.00 0.00 0.00 3.86
216 217 5.514500 AAATTAAGGGAGTAGCAGTTGGA 57.486 39.130 0.00 0.00 0.00 3.53
217 218 7.881775 ATAAAATTAAGGGAGTAGCAGTTGG 57.118 36.000 0.00 0.00 0.00 3.77
218 219 9.614792 AGTATAAAATTAAGGGAGTAGCAGTTG 57.385 33.333 0.00 0.00 0.00 3.16
221 222 9.930693 CCTAGTATAAAATTAAGGGAGTAGCAG 57.069 37.037 0.00 0.00 0.00 4.24
222 223 8.877195 CCCTAGTATAAAATTAAGGGAGTAGCA 58.123 37.037 0.00 0.00 45.53 3.49
223 224 9.097946 TCCCTAGTATAAAATTAAGGGAGTAGC 57.902 37.037 3.78 0.00 46.07 3.58
229 230 8.877195 TGCTACTCCCTAGTATAAAATTAAGGG 58.123 37.037 0.00 0.00 44.29 3.95
230 231 9.930693 CTGCTACTCCCTAGTATAAAATTAAGG 57.069 37.037 0.00 0.00 37.57 2.69
241 242 9.956640 GATAACTAATACTGCTACTCCCTAGTA 57.043 37.037 0.00 0.00 37.15 1.82
242 243 7.607223 CGATAACTAATACTGCTACTCCCTAGT 59.393 40.741 0.00 0.00 39.91 2.57
243 244 7.414319 GCGATAACTAATACTGCTACTCCCTAG 60.414 44.444 0.00 0.00 0.00 3.02
244 245 6.373774 GCGATAACTAATACTGCTACTCCCTA 59.626 42.308 0.00 0.00 0.00 3.53
245 246 5.183522 GCGATAACTAATACTGCTACTCCCT 59.816 44.000 0.00 0.00 0.00 4.20
246 247 5.183522 AGCGATAACTAATACTGCTACTCCC 59.816 44.000 0.00 0.00 0.00 4.30
247 248 6.072618 TGAGCGATAACTAATACTGCTACTCC 60.073 42.308 0.00 0.00 29.93 3.85
248 249 6.900189 TGAGCGATAACTAATACTGCTACTC 58.100 40.000 0.00 0.00 29.93 2.59
249 250 6.879276 TGAGCGATAACTAATACTGCTACT 57.121 37.500 0.00 0.00 29.93 2.57
250 251 6.088350 GCTTGAGCGATAACTAATACTGCTAC 59.912 42.308 0.00 0.00 29.93 3.58
251 252 6.150318 GCTTGAGCGATAACTAATACTGCTA 58.850 40.000 0.00 0.00 29.93 3.49
252 253 4.985409 GCTTGAGCGATAACTAATACTGCT 59.015 41.667 0.00 0.00 31.83 4.24
253 254 4.150804 GGCTTGAGCGATAACTAATACTGC 59.849 45.833 0.00 0.00 43.26 4.40
254 255 5.289595 TGGCTTGAGCGATAACTAATACTG 58.710 41.667 0.00 0.00 43.26 2.74
255 256 5.531122 TGGCTTGAGCGATAACTAATACT 57.469 39.130 0.00 0.00 43.26 2.12
256 257 7.884816 TTATGGCTTGAGCGATAACTAATAC 57.115 36.000 14.02 0.00 43.47 1.89
257 258 8.896320 TTTTATGGCTTGAGCGATAACTAATA 57.104 30.769 16.65 3.44 46.35 0.98
258 259 7.801716 TTTTATGGCTTGAGCGATAACTAAT 57.198 32.000 16.65 0.00 46.35 1.73
259 260 7.801716 ATTTTATGGCTTGAGCGATAACTAA 57.198 32.000 16.65 11.51 46.35 2.24
261 262 7.986085 ATATTTTATGGCTTGAGCGATAACT 57.014 32.000 16.65 11.30 46.35 2.24
262 263 7.905493 GCTATATTTTATGGCTTGAGCGATAAC 59.095 37.037 16.65 4.15 46.35 1.89
263 264 7.824289 AGCTATATTTTATGGCTTGAGCGATAA 59.176 33.333 14.02 14.02 45.51 1.75
264 265 7.331026 AGCTATATTTTATGGCTTGAGCGATA 58.669 34.615 3.93 3.93 43.26 2.92
265 266 6.176183 AGCTATATTTTATGGCTTGAGCGAT 58.824 36.000 5.81 5.81 43.26 4.58
266 267 5.551233 AGCTATATTTTATGGCTTGAGCGA 58.449 37.500 0.11 0.00 43.26 4.93
267 268 5.869753 AGCTATATTTTATGGCTTGAGCG 57.130 39.130 0.11 0.00 43.26 5.03
268 269 8.610896 CATCTAGCTATATTTTATGGCTTGAGC 58.389 37.037 16.91 0.00 37.92 4.26
269 270 8.610896 GCATCTAGCTATATTTTATGGCTTGAG 58.389 37.037 16.91 8.70 37.92 3.02
270 271 8.102676 TGCATCTAGCTATATTTTATGGCTTGA 58.897 33.333 15.21 15.21 45.94 3.02
271 272 8.272545 TGCATCTAGCTATATTTTATGGCTTG 57.727 34.615 10.11 8.75 45.94 4.01
272 273 9.118300 GATGCATCTAGCTATATTTTATGGCTT 57.882 33.333 19.70 0.00 45.94 4.35
273 274 7.718753 GGATGCATCTAGCTATATTTTATGGCT 59.281 37.037 25.28 9.80 45.94 4.75
274 275 7.500227 TGGATGCATCTAGCTATATTTTATGGC 59.500 37.037 25.28 3.59 45.94 4.40
275 276 8.969260 TGGATGCATCTAGCTATATTTTATGG 57.031 34.615 25.28 0.00 45.94 2.74
279 280 9.524496 TGAAATGGATGCATCTAGCTATATTTT 57.476 29.630 25.28 14.57 45.94 1.82
280 281 9.524496 TTGAAATGGATGCATCTAGCTATATTT 57.476 29.630 25.28 15.24 45.94 1.40
281 282 8.954350 GTTGAAATGGATGCATCTAGCTATATT 58.046 33.333 25.28 7.52 45.94 1.28
282 283 7.279536 CGTTGAAATGGATGCATCTAGCTATAT 59.720 37.037 25.28 1.05 45.94 0.86
283 284 6.591448 CGTTGAAATGGATGCATCTAGCTATA 59.409 38.462 25.28 4.94 45.94 1.31
284 285 5.410746 CGTTGAAATGGATGCATCTAGCTAT 59.589 40.000 25.28 7.87 45.94 2.97
285 286 4.751600 CGTTGAAATGGATGCATCTAGCTA 59.248 41.667 25.28 8.23 45.94 3.32
286 287 3.562973 CGTTGAAATGGATGCATCTAGCT 59.437 43.478 25.28 11.16 45.94 3.32
287 288 3.561310 TCGTTGAAATGGATGCATCTAGC 59.439 43.478 25.28 13.64 45.96 3.42
288 289 4.571984 TGTCGTTGAAATGGATGCATCTAG 59.428 41.667 25.28 6.75 0.00 2.43
289 290 4.512484 TGTCGTTGAAATGGATGCATCTA 58.488 39.130 25.28 20.79 0.00 1.98
290 291 3.346315 TGTCGTTGAAATGGATGCATCT 58.654 40.909 25.28 6.25 0.00 2.90
291 292 3.763097 TGTCGTTGAAATGGATGCATC 57.237 42.857 18.81 18.81 0.00 3.91
292 293 4.517952 TTTGTCGTTGAAATGGATGCAT 57.482 36.364 0.00 0.00 0.00 3.96
293 294 3.998099 TTTGTCGTTGAAATGGATGCA 57.002 38.095 0.00 0.00 0.00 3.96
294 295 8.801715 ATATTATTTGTCGTTGAAATGGATGC 57.198 30.769 0.00 0.00 0.00 3.91
295 296 9.949174 TGATATTATTTGTCGTTGAAATGGATG 57.051 29.630 0.00 0.00 0.00 3.51
297 298 9.389755 TCTGATATTATTTGTCGTTGAAATGGA 57.610 29.630 0.00 0.00 0.00 3.41
298 299 9.438291 GTCTGATATTATTTGTCGTTGAAATGG 57.562 33.333 0.00 0.00 0.00 3.16
299 300 9.147364 CGTCTGATATTATTTGTCGTTGAAATG 57.853 33.333 0.00 0.00 0.00 2.32
300 301 8.335356 CCGTCTGATATTATTTGTCGTTGAAAT 58.665 33.333 0.00 0.00 0.00 2.17
301 302 7.546316 TCCGTCTGATATTATTTGTCGTTGAAA 59.454 33.333 0.00 0.00 0.00 2.69
302 303 7.036829 TCCGTCTGATATTATTTGTCGTTGAA 58.963 34.615 0.00 0.00 0.00 2.69
303 304 6.566141 TCCGTCTGATATTATTTGTCGTTGA 58.434 36.000 0.00 0.00 0.00 3.18
304 305 6.695713 TCTCCGTCTGATATTATTTGTCGTTG 59.304 38.462 0.00 0.00 0.00 4.10
305 306 6.802608 TCTCCGTCTGATATTATTTGTCGTT 58.197 36.000 0.00 0.00 0.00 3.85
306 307 6.262496 TCTCTCCGTCTGATATTATTTGTCGT 59.738 38.462 0.00 0.00 0.00 4.34
307 308 6.669278 TCTCTCCGTCTGATATTATTTGTCG 58.331 40.000 0.00 0.00 0.00 4.35
308 309 7.653647 ACTCTCTCCGTCTGATATTATTTGTC 58.346 38.462 0.00 0.00 0.00 3.18
309 310 7.589958 ACTCTCTCCGTCTGATATTATTTGT 57.410 36.000 0.00 0.00 0.00 2.83
310 311 8.788806 AGTACTCTCTCCGTCTGATATTATTTG 58.211 37.037 0.00 0.00 0.00 2.32
311 312 8.788806 CAGTACTCTCTCCGTCTGATATTATTT 58.211 37.037 0.00 0.00 0.00 1.40
312 313 7.094549 GCAGTACTCTCTCCGTCTGATATTATT 60.095 40.741 0.00 0.00 0.00 1.40
313 314 6.373216 GCAGTACTCTCTCCGTCTGATATTAT 59.627 42.308 0.00 0.00 0.00 1.28
314 315 5.701750 GCAGTACTCTCTCCGTCTGATATTA 59.298 44.000 0.00 0.00 0.00 0.98
315 316 4.517453 GCAGTACTCTCTCCGTCTGATATT 59.483 45.833 0.00 0.00 0.00 1.28
316 317 4.069304 GCAGTACTCTCTCCGTCTGATAT 58.931 47.826 0.00 0.00 0.00 1.63
317 318 3.118371 TGCAGTACTCTCTCCGTCTGATA 60.118 47.826 0.00 0.00 0.00 2.15
318 319 2.294074 GCAGTACTCTCTCCGTCTGAT 58.706 52.381 0.00 0.00 0.00 2.90
319 320 1.003233 TGCAGTACTCTCTCCGTCTGA 59.997 52.381 0.00 0.00 0.00 3.27
320 321 1.454201 TGCAGTACTCTCTCCGTCTG 58.546 55.000 0.00 0.00 0.00 3.51
321 322 2.201921 TTGCAGTACTCTCTCCGTCT 57.798 50.000 0.00 0.00 0.00 4.18
322 323 3.182967 CAATTGCAGTACTCTCTCCGTC 58.817 50.000 0.00 0.00 0.00 4.79
323 324 2.563179 ACAATTGCAGTACTCTCTCCGT 59.437 45.455 5.05 0.00 0.00 4.69
324 325 3.238108 ACAATTGCAGTACTCTCTCCG 57.762 47.619 5.05 0.00 0.00 4.63
325 326 8.894768 AAATATACAATTGCAGTACTCTCTCC 57.105 34.615 5.05 0.00 0.00 3.71
351 352 9.216117 GCAAATCAGTCCTTAAACTTAGTTCTA 57.784 33.333 0.00 0.00 0.00 2.10
352 353 7.719633 TGCAAATCAGTCCTTAAACTTAGTTCT 59.280 33.333 0.00 0.00 0.00 3.01
353 354 7.803659 GTGCAAATCAGTCCTTAAACTTAGTTC 59.196 37.037 0.00 0.00 0.00 3.01
354 355 7.255486 GGTGCAAATCAGTCCTTAAACTTAGTT 60.255 37.037 0.00 0.00 0.00 2.24
355 356 6.206829 GGTGCAAATCAGTCCTTAAACTTAGT 59.793 38.462 0.00 0.00 0.00 2.24
356 357 6.431234 AGGTGCAAATCAGTCCTTAAACTTAG 59.569 38.462 0.00 0.00 0.00 2.18
357 358 6.303839 AGGTGCAAATCAGTCCTTAAACTTA 58.696 36.000 0.00 0.00 0.00 2.24
358 359 5.140454 AGGTGCAAATCAGTCCTTAAACTT 58.860 37.500 0.00 0.00 0.00 2.66
359 360 4.729868 AGGTGCAAATCAGTCCTTAAACT 58.270 39.130 0.00 0.00 0.00 2.66
360 361 5.453567 AAGGTGCAAATCAGTCCTTAAAC 57.546 39.130 0.90 0.00 36.84 2.01
361 362 5.010617 GGAAAGGTGCAAATCAGTCCTTAAA 59.989 40.000 3.20 0.00 37.50 1.52
362 363 4.522789 GGAAAGGTGCAAATCAGTCCTTAA 59.477 41.667 3.20 0.00 37.50 1.85
363 364 4.079253 GGAAAGGTGCAAATCAGTCCTTA 58.921 43.478 3.20 0.00 37.50 2.69
364 365 2.893489 GGAAAGGTGCAAATCAGTCCTT 59.107 45.455 0.00 0.00 39.75 3.36
365 366 2.158475 TGGAAAGGTGCAAATCAGTCCT 60.158 45.455 0.00 0.00 0.00 3.85
366 367 2.238521 TGGAAAGGTGCAAATCAGTCC 58.761 47.619 0.00 0.00 0.00 3.85
367 368 4.525912 ATTGGAAAGGTGCAAATCAGTC 57.474 40.909 0.00 0.00 38.70 3.51
368 369 6.610075 ATTATTGGAAAGGTGCAAATCAGT 57.390 33.333 0.00 0.00 38.70 3.41
369 370 7.603404 TGAAATTATTGGAAAGGTGCAAATCAG 59.397 33.333 0.00 0.00 38.70 2.90
370 371 7.387397 GTGAAATTATTGGAAAGGTGCAAATCA 59.613 33.333 0.00 0.00 38.70 2.57
371 372 7.411804 CGTGAAATTATTGGAAAGGTGCAAATC 60.412 37.037 0.00 0.00 38.70 2.17
372 373 6.368516 CGTGAAATTATTGGAAAGGTGCAAAT 59.631 34.615 0.00 0.00 38.70 2.32
373 374 5.694006 CGTGAAATTATTGGAAAGGTGCAAA 59.306 36.000 0.00 0.00 38.70 3.68
374 375 5.226396 CGTGAAATTATTGGAAAGGTGCAA 58.774 37.500 0.00 0.00 39.64 4.08
375 376 4.321601 CCGTGAAATTATTGGAAAGGTGCA 60.322 41.667 0.00 0.00 0.00 4.57
376 377 4.173256 CCGTGAAATTATTGGAAAGGTGC 58.827 43.478 0.00 0.00 0.00 5.01
377 378 4.219725 ACCCGTGAAATTATTGGAAAGGTG 59.780 41.667 0.00 0.00 0.00 4.00
378 379 4.219725 CACCCGTGAAATTATTGGAAAGGT 59.780 41.667 0.00 0.00 0.00 3.50
379 380 4.743493 CACCCGTGAAATTATTGGAAAGG 58.257 43.478 0.00 0.00 0.00 3.11
380 381 4.173256 GCACCCGTGAAATTATTGGAAAG 58.827 43.478 0.00 0.00 0.00 2.62
381 382 3.574396 TGCACCCGTGAAATTATTGGAAA 59.426 39.130 0.00 0.00 0.00 3.13
382 383 3.157881 TGCACCCGTGAAATTATTGGAA 58.842 40.909 0.00 0.00 0.00 3.53
383 384 2.796557 TGCACCCGTGAAATTATTGGA 58.203 42.857 0.00 0.00 0.00 3.53
384 385 3.799281 ATGCACCCGTGAAATTATTGG 57.201 42.857 0.00 0.00 0.00 3.16
385 386 6.811170 AGTAAAATGCACCCGTGAAATTATTG 59.189 34.615 0.00 0.00 0.00 1.90
386 387 6.930731 AGTAAAATGCACCCGTGAAATTATT 58.069 32.000 0.00 0.02 0.00 1.40
387 388 6.377146 AGAGTAAAATGCACCCGTGAAATTAT 59.623 34.615 0.00 0.00 0.00 1.28
388 389 5.708230 AGAGTAAAATGCACCCGTGAAATTA 59.292 36.000 0.00 0.00 0.00 1.40
389 390 4.522789 AGAGTAAAATGCACCCGTGAAATT 59.477 37.500 0.00 0.00 0.00 1.82
390 391 4.079253 AGAGTAAAATGCACCCGTGAAAT 58.921 39.130 0.00 0.00 0.00 2.17
391 392 3.482436 AGAGTAAAATGCACCCGTGAAA 58.518 40.909 0.00 0.00 0.00 2.69
392 393 3.134574 AGAGTAAAATGCACCCGTGAA 57.865 42.857 0.00 0.00 0.00 3.18
393 394 2.851263 AGAGTAAAATGCACCCGTGA 57.149 45.000 0.00 0.00 0.00 4.35
394 395 5.365403 TTTAAGAGTAAAATGCACCCGTG 57.635 39.130 0.00 0.00 0.00 4.94
395 396 6.584185 AATTTAAGAGTAAAATGCACCCGT 57.416 33.333 0.00 0.00 32.98 5.28
396 397 9.019764 CATTAATTTAAGAGTAAAATGCACCCG 57.980 33.333 0.00 0.00 32.98 5.28
397 398 9.869757 ACATTAATTTAAGAGTAAAATGCACCC 57.130 29.630 0.00 0.00 32.98 4.61
400 401 9.868277 CCCACATTAATTTAAGAGTAAAATGCA 57.132 29.630 0.00 0.00 32.98 3.96
406 407 9.528489 AGCTTTCCCACATTAATTTAAGAGTAA 57.472 29.630 0.00 0.00 0.00 2.24
408 409 9.178758 CTAGCTTTCCCACATTAATTTAAGAGT 57.821 33.333 0.00 0.00 0.00 3.24
409 410 9.396022 TCTAGCTTTCCCACATTAATTTAAGAG 57.604 33.333 0.00 0.00 0.00 2.85
410 411 9.396022 CTCTAGCTTTCCCACATTAATTTAAGA 57.604 33.333 0.00 0.00 0.00 2.10
411 412 9.396022 TCTCTAGCTTTCCCACATTAATTTAAG 57.604 33.333 0.00 0.00 0.00 1.85
412 413 9.396022 CTCTCTAGCTTTCCCACATTAATTTAA 57.604 33.333 0.00 0.00 0.00 1.52
413 414 7.993183 CCTCTCTAGCTTTCCCACATTAATTTA 59.007 37.037 0.00 0.00 0.00 1.40
414 415 6.830838 CCTCTCTAGCTTTCCCACATTAATTT 59.169 38.462 0.00 0.00 0.00 1.82
415 416 6.069381 ACCTCTCTAGCTTTCCCACATTAATT 60.069 38.462 0.00 0.00 0.00 1.40
416 417 5.430089 ACCTCTCTAGCTTTCCCACATTAAT 59.570 40.000 0.00 0.00 0.00 1.40
417 418 4.783227 ACCTCTCTAGCTTTCCCACATTAA 59.217 41.667 0.00 0.00 0.00 1.40
418 419 4.162320 CACCTCTCTAGCTTTCCCACATTA 59.838 45.833 0.00 0.00 0.00 1.90
419 420 3.054802 CACCTCTCTAGCTTTCCCACATT 60.055 47.826 0.00 0.00 0.00 2.71
420 421 2.503356 CACCTCTCTAGCTTTCCCACAT 59.497 50.000 0.00 0.00 0.00 3.21
421 422 1.902508 CACCTCTCTAGCTTTCCCACA 59.097 52.381 0.00 0.00 0.00 4.17
422 423 2.093921 GTCACCTCTCTAGCTTTCCCAC 60.094 54.545 0.00 0.00 0.00 4.61
423 424 2.180276 GTCACCTCTCTAGCTTTCCCA 58.820 52.381 0.00 0.00 0.00 4.37
424 425 1.483004 GGTCACCTCTCTAGCTTTCCC 59.517 57.143 0.00 0.00 0.00 3.97
425 426 2.180276 TGGTCACCTCTCTAGCTTTCC 58.820 52.381 0.00 0.00 0.00 3.13
426 427 5.303078 TGATATGGTCACCTCTCTAGCTTTC 59.697 44.000 0.00 0.00 0.00 2.62
427 428 5.211973 TGATATGGTCACCTCTCTAGCTTT 58.788 41.667 0.00 0.00 0.00 3.51
428 429 4.809193 TGATATGGTCACCTCTCTAGCTT 58.191 43.478 0.00 0.00 0.00 3.74
429 430 4.461450 TGATATGGTCACCTCTCTAGCT 57.539 45.455 0.00 0.00 0.00 3.32
430 431 4.769488 TGATGATATGGTCACCTCTCTAGC 59.231 45.833 0.00 0.00 40.28 3.42
431 432 6.266330 TGTTGATGATATGGTCACCTCTCTAG 59.734 42.308 0.00 0.00 40.28 2.43
432 433 6.136155 TGTTGATGATATGGTCACCTCTCTA 58.864 40.000 0.00 0.00 40.28 2.43
433 434 4.964897 TGTTGATGATATGGTCACCTCTCT 59.035 41.667 0.00 0.00 40.28 3.10
434 435 5.282055 TGTTGATGATATGGTCACCTCTC 57.718 43.478 0.00 0.00 40.28 3.20
435 436 5.901413 ATGTTGATGATATGGTCACCTCT 57.099 39.130 0.00 0.00 40.28 3.69
436 437 6.524734 TGTATGTTGATGATATGGTCACCTC 58.475 40.000 0.00 0.00 40.28 3.85
437 438 6.499106 TGTATGTTGATGATATGGTCACCT 57.501 37.500 0.00 0.00 40.28 4.00
438 439 6.767902 ACTTGTATGTTGATGATATGGTCACC 59.232 38.462 0.00 0.00 40.28 4.02
439 440 7.792374 ACTTGTATGTTGATGATATGGTCAC 57.208 36.000 0.00 0.00 40.28 3.67
440 441 9.898152 TTTACTTGTATGTTGATGATATGGTCA 57.102 29.630 0.00 0.00 42.06 4.02
481 482 9.484806 AGATGAAATGGGAATCTTACATTCTTT 57.515 29.630 0.00 0.00 34.00 2.52
482 483 9.484806 AAGATGAAATGGGAATCTTACATTCTT 57.515 29.630 0.00 0.00 38.55 2.52
483 484 8.910944 CAAGATGAAATGGGAATCTTACATTCT 58.089 33.333 0.00 0.00 38.33 2.40
484 485 7.650903 GCAAGATGAAATGGGAATCTTACATTC 59.349 37.037 0.00 0.00 38.33 2.67
485 486 7.343833 AGCAAGATGAAATGGGAATCTTACATT 59.656 33.333 0.00 0.00 38.33 2.71
486 487 6.837568 AGCAAGATGAAATGGGAATCTTACAT 59.162 34.615 0.00 0.00 38.33 2.29
487 488 6.189859 AGCAAGATGAAATGGGAATCTTACA 58.810 36.000 0.00 0.00 38.33 2.41
488 489 6.705863 AGCAAGATGAAATGGGAATCTTAC 57.294 37.500 0.00 0.00 38.33 2.34
489 490 7.722949 AAAGCAAGATGAAATGGGAATCTTA 57.277 32.000 0.00 0.00 38.33 2.10
490 491 6.616237 AAAGCAAGATGAAATGGGAATCTT 57.384 33.333 0.00 0.00 40.44 2.40
491 492 6.211986 TGAAAAGCAAGATGAAATGGGAATCT 59.788 34.615 0.00 0.00 31.99 2.40
492 493 6.312180 GTGAAAAGCAAGATGAAATGGGAATC 59.688 38.462 0.00 0.00 0.00 2.52
493 494 6.013984 AGTGAAAAGCAAGATGAAATGGGAAT 60.014 34.615 0.00 0.00 0.00 3.01
494 495 5.305128 AGTGAAAAGCAAGATGAAATGGGAA 59.695 36.000 0.00 0.00 0.00 3.97
495 496 4.834496 AGTGAAAAGCAAGATGAAATGGGA 59.166 37.500 0.00 0.00 0.00 4.37
496 497 5.143376 AGTGAAAAGCAAGATGAAATGGG 57.857 39.130 0.00 0.00 0.00 4.00
497 498 6.976925 GGATAGTGAAAAGCAAGATGAAATGG 59.023 38.462 0.00 0.00 0.00 3.16
498 499 6.976925 GGGATAGTGAAAAGCAAGATGAAATG 59.023 38.462 0.00 0.00 0.00 2.32
499 500 6.894103 AGGGATAGTGAAAAGCAAGATGAAAT 59.106 34.615 0.00 0.00 0.00 2.17
500 501 6.248433 AGGGATAGTGAAAAGCAAGATGAAA 58.752 36.000 0.00 0.00 0.00 2.69
501 502 5.819991 AGGGATAGTGAAAAGCAAGATGAA 58.180 37.500 0.00 0.00 0.00 2.57
502 503 5.441718 AGGGATAGTGAAAAGCAAGATGA 57.558 39.130 0.00 0.00 0.00 2.92
503 504 5.220739 CGAAGGGATAGTGAAAAGCAAGATG 60.221 44.000 0.00 0.00 0.00 2.90
504 505 4.878397 CGAAGGGATAGTGAAAAGCAAGAT 59.122 41.667 0.00 0.00 0.00 2.40
505 506 4.253685 CGAAGGGATAGTGAAAAGCAAGA 58.746 43.478 0.00 0.00 0.00 3.02
506 507 4.003648 ACGAAGGGATAGTGAAAAGCAAG 58.996 43.478 0.00 0.00 0.00 4.01
507 508 4.000988 GACGAAGGGATAGTGAAAAGCAA 58.999 43.478 0.00 0.00 0.00 3.91
508 509 3.596214 GACGAAGGGATAGTGAAAAGCA 58.404 45.455 0.00 0.00 0.00 3.91
509 510 2.937149 GGACGAAGGGATAGTGAAAAGC 59.063 50.000 0.00 0.00 0.00 3.51
510 511 4.202245 TGGACGAAGGGATAGTGAAAAG 57.798 45.455 0.00 0.00 0.00 2.27
511 512 4.320870 GTTGGACGAAGGGATAGTGAAAA 58.679 43.478 0.00 0.00 0.00 2.29
512 513 3.307199 GGTTGGACGAAGGGATAGTGAAA 60.307 47.826 0.00 0.00 0.00 2.69
513 514 2.235402 GGTTGGACGAAGGGATAGTGAA 59.765 50.000 0.00 0.00 0.00 3.18
514 515 1.829222 GGTTGGACGAAGGGATAGTGA 59.171 52.381 0.00 0.00 0.00 3.41
515 516 1.831736 AGGTTGGACGAAGGGATAGTG 59.168 52.381 0.00 0.00 0.00 2.74
516 517 2.249309 AGGTTGGACGAAGGGATAGT 57.751 50.000 0.00 0.00 0.00 2.12
517 518 2.158943 GGAAGGTTGGACGAAGGGATAG 60.159 54.545 0.00 0.00 0.00 2.08
518 519 1.835531 GGAAGGTTGGACGAAGGGATA 59.164 52.381 0.00 0.00 0.00 2.59
519 520 0.618981 GGAAGGTTGGACGAAGGGAT 59.381 55.000 0.00 0.00 0.00 3.85
520 521 0.765135 TGGAAGGTTGGACGAAGGGA 60.765 55.000 0.00 0.00 0.00 4.20
521 522 0.328258 ATGGAAGGTTGGACGAAGGG 59.672 55.000 0.00 0.00 0.00 3.95
522 523 1.271379 ACATGGAAGGTTGGACGAAGG 60.271 52.381 0.00 0.00 0.00 3.46
523 524 2.185004 ACATGGAAGGTTGGACGAAG 57.815 50.000 0.00 0.00 0.00 3.79
524 525 3.992943 ATACATGGAAGGTTGGACGAA 57.007 42.857 0.00 0.00 28.09 3.85
525 526 6.734502 TTATATACATGGAAGGTTGGACGA 57.265 37.500 0.00 0.00 28.09 4.20
526 527 9.667107 ATTATTATATACATGGAAGGTTGGACG 57.333 33.333 0.00 0.00 28.09 4.79
549 550 9.762381 ACCCAAGTAAATTAAGGTGATTGATTA 57.238 29.630 0.00 0.00 0.00 1.75
550 551 8.664669 ACCCAAGTAAATTAAGGTGATTGATT 57.335 30.769 0.00 0.00 0.00 2.57
551 552 8.664669 AACCCAAGTAAATTAAGGTGATTGAT 57.335 30.769 0.00 0.00 29.36 2.57
552 553 9.589461 TTAACCCAAGTAAATTAAGGTGATTGA 57.411 29.630 0.00 0.00 29.36 2.57
564 565 9.884636 GCAAAAGGATAATTAACCCAAGTAAAT 57.115 29.630 8.09 0.00 0.00 1.40
565 566 8.315482 GGCAAAAGGATAATTAACCCAAGTAAA 58.685 33.333 8.09 0.00 0.00 2.01
566 567 7.093245 GGGCAAAAGGATAATTAACCCAAGTAA 60.093 37.037 8.09 0.00 34.82 2.24
567 568 6.381707 GGGCAAAAGGATAATTAACCCAAGTA 59.618 38.462 8.09 0.00 34.82 2.24
568 569 5.188948 GGGCAAAAGGATAATTAACCCAAGT 59.811 40.000 8.09 0.00 34.82 3.16
1251 1254 2.813754 CAGAGCATCGACCCAAAGAAAA 59.186 45.455 0.00 0.00 42.67 2.29
1495 1498 3.901844 ACCAGTGCGATTACCATACCTAT 59.098 43.478 0.00 0.00 0.00 2.57
2041 2047 1.823610 GGCGTAAACCTCTACCAGAGT 59.176 52.381 2.71 0.00 40.72 3.24
2257 2267 7.620094 ACAGTCTCACTATGTATACCTTCCTTT 59.380 37.037 0.00 0.00 0.00 3.11
2301 2315 5.048782 GTGCAAACATTCATGGTCTCACTAA 60.049 40.000 0.00 0.00 31.33 2.24
2312 2326 0.310543 ACGCGTGTGCAAACATTCAT 59.689 45.000 12.93 0.00 42.97 2.57
2415 2429 2.664402 AAACCAAGTGCCACTCTGAT 57.336 45.000 0.00 0.00 0.00 2.90
2514 2528 1.003051 GGGGGTGAGAAGCCCTCTA 59.997 63.158 12.46 0.00 43.38 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.