AutoCloner

Multiple sequence alignment - TraesCS7A01G509500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7A01G509500	chr7A	100.000	3019	0	0	1	3019	696906448	696903430	0.000000e+00	5576.0
1	TraesCS7A01G509500	chr7A	98.493	531	8	0	2489	3019	696967953	696967423	0.000000e+00	937.0
2	TraesCS7A01G509500	chr7B	90.145	1725	129	12	1132	2831	688735176	688733468	0.000000e+00	2206.0
3	TraesCS7A01G509500	chr7B	88.482	573	56	5	198	770	688738246	688737684	0.000000e+00	684.0
4	TraesCS7A01G509500	chr7B	90.545	275	19	4	854	1127	688735474	688735206	1.030000e-94	357.0
5	TraesCS7A01G509500	chr7D	89.944	895	57	10	1130	2017	605223173	605224041	0.000000e+00	1123.0
6	TraesCS7A01G509500	chr7D	89.706	408	32	3	230	637	605219421	605219818	2.080000e-141	512.0
7	TraesCS7A01G509500	chr7D	91.507	365	30	1	2651	3014	605225018	605225382	4.490000e-138	501.0
8	TraesCS7A01G509500	chr7D	82.552	533	71	10	2453	2979	605227812	605228328	1.650000e-122	449.0
9	TraesCS7A01G509500	chr7D	90.909	242	19	3	1	241	605219161	605219400	3.750000e-84	322.0
10	TraesCS7A01G509500	chr7D	81.818	429	37	10	2198	2604	605224318	605224727	3.750000e-84	322.0
11	TraesCS7A01G509500	chr7D	85.769	260	23	5	666	912	605222622	605222880	2.310000e-66	263.0
12	TraesCS7A01G509500	chr7D	77.260	365	34	14	2145	2479	605227464	605227809	5.180000e-38	169.0
13	TraesCS7A01G509500	chr7D	91.667	108	5	4	907	1011	605222960	605223066	2.430000e-31	147.0
14	TraesCS7A01G509500	chr4A	89.211	862	73	7	1	854	699608638	699607789	0.000000e+00	1059.0
15	TraesCS7A01G509500	chr4A	89.286	196	12	5	936	1131	699586653	699586467	1.400000e-58	237.0
16	TraesCS7A01G509500	chr4A	90.345	145	14	0	701	845	707244296	707244152	1.100000e-44	191.0
17	TraesCS7A01G509500	chr3D	81.975	638	102	7	1253	1879	306518139	306517504	2.060000e-146	529.0
18	TraesCS7A01G509500	chr3D	75.145	688	142	23	2271	2941	475784172	475783497	2.280000e-76	296.0
19	TraesCS7A01G509500	chr3D	90.132	152	15	0	701	852	406145457	406145608	6.600000e-47	198.0
20	TraesCS7A01G509500	chr3A	81.761	636	107	4	1253	1879	425242149	425241514	9.590000e-145	523.0
21	TraesCS7A01G509500	chr3B	81.435	641	106	7	1251	1880	414474552	414475190	2.080000e-141	512.0
22	TraesCS7A01G509500	chr3B	94.079	152	9	0	701	852	532046227	532046378	6.510000e-57	231.0
23	TraesCS7A01G509500	chr2D	77.660	94	17	4	2551	2642	606771189	606771280	2.000000e-03	54.7

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7A01G509500	chr7A	696903430	696906448	3018	True	5576.000000	5576	100.000000	1	3019	1	chr7A.!!$R1	3018
1	TraesCS7A01G509500	chr7A	696967423	696967953	530	True	937.000000	937	98.493000	2489	3019	1	chr7A.!!$R2	530
2	TraesCS7A01G509500	chr7B	688733468	688738246	4778	True	1082.333333	2206	89.724000	198	2831	3	chr7B.!!$R1	2633
3	TraesCS7A01G509500	chr7D	605219161	605228328	9167	False	423.111111	1123	86.792444	1	3014	9	chr7D.!!$F1	3013
4	TraesCS7A01G509500	chr4A	699607789	699608638	849	True	1059.000000	1059	89.211000	1	854	1	chr4A.!!$R2	853
5	TraesCS7A01G509500	chr3D	306517504	306518139	635	True	529.000000	529	81.975000	1253	1879	1	chr3D.!!$R1	626
6	TraesCS7A01G509500	chr3D	475783497	475784172	675	True	296.000000	296	75.145000	2271	2941	1	chr3D.!!$R2	670
7	TraesCS7A01G509500	chr3A	425241514	425242149	635	True	523.000000	523	81.761000	1253	1879	1	chr3A.!!$R1	626
8	TraesCS7A01G509500	chr3B	414474552	414475190	638	False	512.000000	512	81.435000	1251	1880	1	chr3B.!!$F1	629

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
381	415	0.029035	CCTTCCATACTCGTCCGACG	59.971	60.0	14.94	14.94	44.19	5.12	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2356	7550	0.673437	GATTTGTGTGTGTGTGGGGG	59.327	55.0	0.0	0.0	0.0	5.4	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
60	61	7.471657	ACACGGGTAAAAATGAATGAAAAAC	57.528	32.000	0.00	0.00	0.00	2.43
149	151	1.818674	GGAGATGTGGCAACGGAAAAT	59.181	47.619	0.00	0.00	42.51	1.82
157	159	2.124122	GGCAACGGAAAATGACAACAC	58.876	47.619	0.00	0.00	0.00	3.32
177	179	1.936547	CTGGAGATTGCCGCTTTAGAC	59.063	52.381	0.00	0.00	0.00	2.59
192	194	5.115480	GCTTTAGACCAAGAGGAATCTCAG	58.885	45.833	0.00	0.00	42.34	3.35
232	234	4.628333	CAGCCCATGTTGATTCAAATTGTC	59.372	41.667	0.00	0.00	0.00	3.18
241	243	5.902613	TGATTCAAATTGTCATCAGTCCC	57.097	39.130	6.54	0.00	0.00	4.46
245	279	4.326826	TCAAATTGTCATCAGTCCCTGAC	58.673	43.478	0.00	0.00	43.63	3.51
269	303	6.018180	ACGATTGTTCACCTCTGTAAAGAAAC	60.018	38.462	0.00	0.00	0.00	2.78
281	315	3.438781	TGTAAAGAAACCCTAAGCATGCG	59.561	43.478	13.01	0.00	0.00	4.73
287	321	0.107017	ACCCTAAGCATGCGCAGATT	60.107	50.000	18.32	15.22	42.27	2.40
299	333	1.201855	GCGCAGATTCGAACAACTCTG	60.202	52.381	18.08	18.08	38.49	3.35
349	383	4.421948	GTGTACCTACATCGGAGTTCAAG	58.578	47.826	0.00	0.00	38.63	3.02
381	415	0.029035	CCTTCCATACTCGTCCGACG	59.971	60.000	14.94	14.94	44.19	5.12
420	454	2.550175	TGGATGGTGTGATGAGGAGAA	58.450	47.619	0.00	0.00	0.00	2.87
421	455	2.502947	TGGATGGTGTGATGAGGAGAAG	59.497	50.000	0.00	0.00	0.00	2.85
459	493	4.377021	TGAACACTAGCAACAATCGAAGT	58.623	39.130	0.00	0.00	0.00	3.01
460	494	4.447724	TGAACACTAGCAACAATCGAAGTC	59.552	41.667	0.00	0.00	0.00	3.01
485	519	0.548926	TAATGGGAGAGGGTGTGGCA	60.549	55.000	0.00	0.00	0.00	4.92
600	634	0.616111	ACACGAGGAGAGCTTGGGAT	60.616	55.000	0.00	0.00	0.00	3.85
601	635	0.539051	CACGAGGAGAGCTTGGGATT	59.461	55.000	0.00	0.00	0.00	3.01
603	637	0.179062	CGAGGAGAGCTTGGGATTGG	60.179	60.000	0.00	0.00	0.00	3.16
604	638	0.182299	GAGGAGAGCTTGGGATTGGG	59.818	60.000	0.00	0.00	0.00	4.12
606	640	0.625849	GGAGAGCTTGGGATTGGGAA	59.374	55.000	0.00	0.00	0.00	3.97
608	642	0.627986	AGAGCTTGGGATTGGGAAGG	59.372	55.000	0.00	0.00	0.00	3.46
609	643	1.000866	AGCTTGGGATTGGGAAGGC	59.999	57.895	0.00	0.00	0.00	4.35
610	644	2.060383	GCTTGGGATTGGGAAGGCC	61.060	63.158	0.00	0.00	0.00	5.19
664	3466	8.437742	CCTCATGTTTTCTTGAATATTTTGCAC	58.562	33.333	0.00	0.00	34.39	4.57
691	3501	4.112634	GAGAAACCTTGGTTTTTGCAGAC	58.887	43.478	17.54	4.86	0.00	3.51
732	3542	3.545633	GACGATATTTTTGCAGCCGATC	58.454	45.455	0.00	0.00	0.00	3.69
737	3547	1.543607	TTTTTGCAGCCGATCCATGA	58.456	45.000	0.00	0.00	0.00	3.07
790	4871	2.005451	GTTCAGTGAGCTACAGCCATG	58.995	52.381	0.00	0.00	43.38	3.66
797	4878	2.440627	TGAGCTACAGCCATGGATCAAT	59.559	45.455	18.40	0.00	43.38	2.57
814	4895	2.729360	TCAATAGTGTCGTGCGAGTTTG	59.271	45.455	0.00	0.00	0.00	2.93
878	5815	0.554792	CATTCCCTGGCTTCTCCCAT	59.445	55.000	0.00	0.00	33.64	4.00
886	5823	2.911143	CTTCTCCCATCCACCCCG	59.089	66.667	0.00	0.00	0.00	5.73
901	5838	4.281435	TCCACCCCGTTTAATTTCTTTTCC	59.719	41.667	0.00	0.00	0.00	3.13
908	5845	6.073112	CCCGTTTAATTTCTTTTCCGTAGTCA	60.073	38.462	0.00	0.00	0.00	3.41
948	5972	4.104738	CCCACCCCATATATATCCATCCAC	59.895	50.000	0.00	0.00	0.00	4.02
1021	6045	3.999663	CACCCTTCTTCATTGTCTCTGTC	59.000	47.826	0.00	0.00	0.00	3.51
1025	6049	5.170021	CCTTCTTCATTGTCTCTGTCTCTG	58.830	45.833	0.00	0.00	0.00	3.35
1030	6054	0.681733	TTGTCTCTGTCTCTGTGCCC	59.318	55.000	0.00	0.00	0.00	5.36
1056	6080	4.389374	ACACTTCACCATTTGTGGTAGAG	58.611	43.478	0.00	4.22	45.48	2.43
1085	6109	0.543277	TCTGGCTGGAGCATAGGTTG	59.457	55.000	0.20	0.00	44.36	3.77
1086	6110	0.465097	CTGGCTGGAGCATAGGTTGG	60.465	60.000	0.20	0.00	44.36	3.77
1087	6111	1.825622	GGCTGGAGCATAGGTTGGC	60.826	63.158	0.20	0.00	44.36	4.52
1088	6112	1.077501	GCTGGAGCATAGGTTGGCA	60.078	57.895	0.00	0.00	41.59	4.92
1089	6113	1.099879	GCTGGAGCATAGGTTGGCAG	61.100	60.000	0.00	0.00	41.59	4.85
1124	6148	0.110192	GAAGCTTGCACAAGTACCGC	60.110	55.000	2.10	0.00	40.45	5.68
1128	6152	1.269051	GCTTGCACAAGTACCGCTTTT	60.269	47.619	11.77	0.00	40.45	2.27
1148	6198	1.993653	CAGGAGATGGCCTTCCACA	59.006	57.895	19.35	0.00	46.92	4.17
1159	6209	0.389426	CCTTCCACACCGTTCTACCG	60.389	60.000	0.00	0.00	0.00	4.02
1173	6223	4.319622	CGTTCTACCGAAGATAGCCACTAG	60.320	50.000	0.00	0.00	33.05	2.57
1266	6316	2.751436	CACCAAGCCATCCACCGG	60.751	66.667	0.00	0.00	0.00	5.28
1499	6550	1.898094	TTCGTCACCTTCGTCGGGA	60.898	57.895	0.00	0.00	0.00	5.14
1508	6559	2.238847	CTTCGTCGGGATCAGGCCAA	62.239	60.000	5.01	0.00	0.00	4.52
1555	6606	3.369052	CCGTCTTGCCCAAGTTCTACATA	60.369	47.826	7.80	0.00	39.38	2.29
1616	6667	3.787001	CGAGGAGGAAGGTGGCCC	61.787	72.222	0.00	0.00	0.00	5.80
1728	6779	1.410004	ATTAGGCACGGCTGCTACTA	58.590	50.000	2.92	0.00	43.66	1.82
1736	6787	2.056223	GGCTGCTACTACACCGGGA	61.056	63.158	6.32	0.00	0.00	5.14
1843	6903	1.003718	CGGGACCTCAAACCCACTC	60.004	63.158	0.00	0.00	45.83	3.51
1880	6940	0.801067	CTACTGCAAGGTCCGTACGC	60.801	60.000	10.49	0.00	39.30	4.42
1882	6942	1.447838	CTGCAAGGTCCGTACGCAT	60.448	57.895	10.49	0.00	31.10	4.73
1899	6959	6.237728	CGTACGCATGTGTGTGTTTTCTATAT	60.238	38.462	22.00	0.00	46.41	0.86
1927	6989	7.851822	TTTCTTTTAATTAGCGTGCTTTCTG	57.148	32.000	0.00	0.00	0.00	3.02
2071	7176	6.551385	TTTTTGGCGCATTTCATATGTTTT	57.449	29.167	10.83	0.00	0.00	2.43
2148	7253	2.094894	CACTTGCATTGTGAGATCGTCC	59.905	50.000	13.16	0.00	37.60	4.79
2163	7268	3.130280	TCGTCCTTTAAGGGGAAACAC	57.870	47.619	11.50	0.00	35.59	3.32
2304	7494	9.438291	CTTAAAATAAAGCATCAACAGGATACG	57.562	33.333	0.00	0.00	46.39	3.06
2314	7504	3.126858	TCAACAGGATACGAAAGCAATGC	59.873	43.478	0.00	0.00	46.39	3.56
2347	7541	7.600065	TCCGTTATCTGTATAGTTAAGATGCC	58.400	38.462	0.00	0.00	32.92	4.40
2349	7543	6.812160	CGTTATCTGTATAGTTAAGATGCCCC	59.188	42.308	0.00	0.00	32.92	5.80
2383	7582	0.662619	CACACACAAATCACGCAGGT	59.337	50.000	0.00	0.00	0.00	4.00
2386	7585	3.058293	CACACACAAATCACGCAGGTAAT	60.058	43.478	0.00	0.00	0.00	1.89
2458	7662	4.918810	AAACTCCCAAGTGATCAAACAC	57.081	40.909	0.00	0.00	40.60	3.32
2947	8399	1.688197	ACGAAGGTCACCGTTTCCTTA	59.312	47.619	0.00	0.00	41.00	2.69
2979	8431	4.537688	AGATTGAAGGAGGAAGATCACCAA	59.462	41.667	10.74	0.00	0.00	3.67
3003	8455	1.469079	CGCCAAATCCAAATTCGGGAC	60.469	52.381	1.19	0.00	37.23	4.46

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
149	151	1.877680	CGGCAATCTCCAGTGTTGTCA	60.878	52.381	0.00	0.00	0.00	3.58
157	159	1.936547	GTCTAAAGCGGCAATCTCCAG	59.063	52.381	1.45	0.00	0.00	3.86
177	179	1.150567	CGCGCTGAGATTCCTCTTGG	61.151	60.000	5.56	0.00	40.10	3.61
192	194	0.041839	CTGAGGCAATGTAATCGCGC	60.042	55.000	0.00	0.00	0.00	6.86
241	243	3.032017	ACAGAGGTGAACAATCGTCAG	57.968	47.619	0.00	0.00	0.00	3.51
245	279	6.363473	GTTTCTTTACAGAGGTGAACAATCG	58.637	40.000	0.00	0.00	0.00	3.34
269	303	0.590195	GAATCTGCGCATGCTTAGGG	59.410	55.000	12.24	0.00	43.34	3.53
299	333	2.817258	TCATGAACCGTCATTTGGGAAC	59.183	45.455	0.00	0.00	42.03	3.62
301	335	2.869101	TCATGAACCGTCATTTGGGA	57.131	45.000	0.00	0.00	42.03	4.37
349	383	2.507407	TGGAAGGCATAGTGGGTTTC	57.493	50.000	0.00	0.00	0.00	2.78
381	415	9.520515	ACCATCCATAGGTTTAATATCAATCAC	57.479	33.333	0.00	0.00	35.33	3.06
420	454	1.680651	CAGAGCCCCTGACGTCTCT	60.681	63.158	17.92	7.03	45.78	3.10
421	455	1.679305	TCAGAGCCCCTGACGTCTC	60.679	63.158	17.92	4.55	46.38	3.36
459	493	0.837272	CCCTCTCCCATTAAAGCCGA	59.163	55.000	0.00	0.00	0.00	5.54
460	494	0.546598	ACCCTCTCCCATTAAAGCCG	59.453	55.000	0.00	0.00	0.00	5.52
485	519	4.759693	TGATTGTTACAACTTCATCGGCTT	59.240	37.500	0.00	0.00	0.00	4.35
543	577	0.912487	ACCCCCTTCATCACGGCTTA	60.912	55.000	0.00	0.00	0.00	3.09
608	642	4.101448	ATGACAGGCTCACGGGGC	62.101	66.667	0.00	0.00	0.00	5.80
609	643	2.124983	CATGACAGGCTCACGGGG	60.125	66.667	0.00	0.00	0.00	5.73
610	644	2.821366	GCATGACAGGCTCACGGG	60.821	66.667	4.51	0.00	0.00	5.28
611	645	2.821366	GGCATGACAGGCTCACGG	60.821	66.667	12.41	0.00	0.00	4.94
612	646	2.267006	AGGCATGACAGGCTCACG	59.733	61.111	12.41	0.00	40.91	4.35
617	651	1.134907	CAAAATGGAGGCATGACAGGC	60.135	52.381	0.00	2.82	0.00	4.85
618	652	1.134907	GCAAAATGGAGGCATGACAGG	60.135	52.381	0.00	0.00	0.00	4.00
691	3501	5.121611	TCGTCCATGTAGCAGTAAAAACATG	59.878	40.000	7.20	7.20	45.59	3.21
732	3542	4.025396	GCTGATATTCTGTGTCGTTCATGG	60.025	45.833	0.00	0.00	0.00	3.66
737	3547	3.610040	TGGCTGATATTCTGTGTCGTT	57.390	42.857	0.00	0.00	0.00	3.85
790	4871	2.120232	CTCGCACGACACTATTGATCC	58.880	52.381	0.00	0.00	0.00	3.36
797	4878	0.386476	ACCAAACTCGCACGACACTA	59.614	50.000	0.00	0.00	0.00	2.74
814	4895	1.451387	AAACGATGGATGGCGGACC	60.451	57.895	0.00	0.00	0.00	4.46
878	5815	4.281435	GGAAAAGAAATTAAACGGGGTGGA	59.719	41.667	0.00	0.00	0.00	4.02
886	5823	7.756286	CGTGACTACGGAAAAGAAATTAAAC	57.244	36.000	0.00	0.00	46.23	2.01
908	5845	4.719369	GGAGCGTGCGAGGAACGT	62.719	66.667	0.00	0.00	42.93	3.99
948	5972	2.014857	TGTACAGAGAATCGTCGGGAG	58.985	52.381	0.00	0.00	42.67	4.30
1021	6045	0.954452	GAAGTGTTTGGGGCACAGAG	59.046	55.000	0.00	0.00	39.17	3.35
1025	6049	1.040339	TGGTGAAGTGTTTGGGGCAC	61.040	55.000	0.00	0.00	37.13	5.01
1072	6096	0.035152	CACTGCCAACCTATGCTCCA	60.035	55.000	0.00	0.00	0.00	3.86
1085	6109	4.547859	CAGATACCTGCCACTGCC	57.452	61.111	0.00	0.00	36.33	4.85
1124	6148	1.475682	GAAGGCCATCTCCTGCAAAAG	59.524	52.381	5.01	0.00	36.38	2.27
1128	6152	1.924939	TGGAAGGCCATCTCCTGCA	60.925	57.895	16.87	0.62	39.92	4.41
1140	6190	0.389426	CGGTAGAACGGTGTGGAAGG	60.389	60.000	0.00	0.00	0.00	3.46
1148	6198	1.680207	GGCTATCTTCGGTAGAACGGT	59.320	52.381	0.00	0.00	36.22	4.83
1173	6223	2.482721	CGGTACAAGTTGATGACCCAAC	59.517	50.000	10.54	0.00	44.92	3.77
1227	6277	1.792993	CGCAGGAGTTACGGTAGTTCG	60.793	57.143	0.00	0.00	0.00	3.95
1277	6327	0.807667	GCAGACGGGATAGTGCACAG	60.808	60.000	21.04	5.34	35.91	3.66
1278	6328	1.218047	GCAGACGGGATAGTGCACA	59.782	57.895	21.04	5.47	35.91	4.57
1305	6355	4.640855	AGTCGCACACCACCGTCG	62.641	66.667	0.00	0.00	0.00	5.12
1360	6410	2.338577	AGGCCATGAGCATGAAGTAC	57.661	50.000	5.01	0.00	46.50	2.73
1469	6519	2.818274	GACGAACGCCATGACCCC	60.818	66.667	0.00	0.00	0.00	4.95
1499	6550	2.971598	CGGTGTCCCTTGGCCTGAT	61.972	63.158	3.32	0.00	0.00	2.90
1508	6559	2.675772	GACGAGGTCGGTGTCCCT	60.676	66.667	4.13	0.00	44.95	4.20
1555	6606	3.684990	TGCGCGTTGAGCCTCTCT	61.685	61.111	8.43	0.00	44.76	3.10
1728	6779	1.596934	CTGCACAGTATCCCGGTGT	59.403	57.895	0.00	0.00	40.84	4.16
1736	6787	3.001514	CCCTGGCCTGCACAGTAT	58.998	61.111	3.32	0.00	34.16	2.12
1834	6894	1.222567	AGAGGTGGTTGAGTGGGTTT	58.777	50.000	0.00	0.00	0.00	3.27
1843	6903	0.995024	AGGGGATGAAGAGGTGGTTG	59.005	55.000	0.00	0.00	0.00	3.77
1904	6965	6.966021	ACAGAAAGCACGCTAATTAAAAGAA	58.034	32.000	0.00	0.00	0.00	2.52
1906	6967	7.739295	TCTACAGAAAGCACGCTAATTAAAAG	58.261	34.615	0.00	0.00	0.00	2.27
1909	6970	7.843490	AATCTACAGAAAGCACGCTAATTAA	57.157	32.000	0.00	0.00	0.00	1.40
1913	6975	5.348724	CAGAAATCTACAGAAAGCACGCTAA	59.651	40.000	0.00	0.00	0.00	3.09
1927	6989	8.417884	AGTGCTAATAGAGGAACAGAAATCTAC	58.582	37.037	0.00	0.00	0.00	2.59
1969	7031	6.077838	GCTAAAAACTTGTGTCCGACTTATG	58.922	40.000	0.00	0.00	0.00	1.90
2051	7156	4.564041	ACAAAACATATGAAATGCGCCAA	58.436	34.783	10.38	0.00	0.00	4.52
2103	7208	8.512138	GTGTGTAAGTTAGGCATCTGTTTTAAT	58.488	33.333	0.00	0.00	0.00	1.40
2112	7217	3.751175	TGCAAGTGTGTAAGTTAGGCATC	59.249	43.478	0.00	0.00	0.00	3.91
2148	7253	3.958147	ACACCAAGTGTTTCCCCTTAAAG	59.042	43.478	0.00	0.00	45.08	1.85
2163	7268	4.935808	AGTATCTTTCGGCTTTACACCAAG	59.064	41.667	0.00	0.00	0.00	3.61
2304	7494	2.287788	CGGATATGTGGGCATTGCTTTC	60.288	50.000	8.82	0.00	36.58	2.62
2314	7504	7.406031	ACTATACAGATAACGGATATGTGGG	57.594	40.000	9.37	3.64	40.26	4.61
2356	7550	0.673437	GATTTGTGTGTGTGTGGGGG	59.327	55.000	0.00	0.00	0.00	5.40
2383	7582	9.168451	TCCGATATTGTTTGACTTTGCTAATTA	57.832	29.630	0.00	0.00	0.00	1.40
2386	7585	7.624360	ATCCGATATTGTTTGACTTTGCTAA	57.376	32.000	0.00	0.00	0.00	3.09
2405	7604	5.484715	CTTTTTACTCCACCAAGTATCCGA	58.515	41.667	0.00	0.00	32.00	4.55
2435	7639	5.422012	AGTGTTTGATCACTTGGGAGTTTTT	59.578	36.000	0.00	0.00	44.92	1.94
2436	7640	4.956075	AGTGTTTGATCACTTGGGAGTTTT	59.044	37.500	0.00	0.00	44.92	2.43
2437	7641	4.536765	AGTGTTTGATCACTTGGGAGTTT	58.463	39.130	0.00	0.00	44.92	2.66
2947	8399	0.543277	TCCTTCAATCTCCGCTGCAT	59.457	50.000	0.00	0.00	0.00	3.96
2979	8431	2.360801	CCGAATTTGGATTTGGCGGTAT	59.639	45.455	5.72	0.00	39.40	2.73

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.