Multiple sequence alignment - TraesCS7A01G509400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G509400 chr7A 100.000 3285 0 0 560 3844 696857187 696860471 0.000000e+00 6067.0
1 TraesCS7A01G509400 chr7A 100.000 245 0 0 1 245 696856628 696856872 1.630000e-123 453.0
2 TraesCS7A01G509400 chr7A 75.617 972 183 35 976 1905 696982117 696981158 2.120000e-117 433.0
3 TraesCS7A01G509400 chr7A 88.618 246 22 5 1 245 108467923 108468163 1.040000e-75 294.0
4 TraesCS7A01G509400 chr7A 100.000 29 0 0 2480 2508 694807887 694807859 2.000000e-03 54.7
5 TraesCS7A01G509400 chr7A 100.000 29 0 0 2480 2508 694945052 694945024 2.000000e-03 54.7
6 TraesCS7A01G509400 chr7D 94.574 1714 72 6 788 2480 605545059 605543346 0.000000e+00 2630.0
7 TraesCS7A01G509400 chr7D 90.861 1313 84 10 2548 3837 605543246 605541947 0.000000e+00 1727.0
8 TraesCS7A01G509400 chr7D 74.577 1479 272 63 1044 2478 605647463 605646045 1.560000e-153 553.0
9 TraesCS7A01G509400 chr7D 91.803 244 18 2 929 1171 605547028 605546786 4.760000e-89 339.0
10 TraesCS7A01G509400 chr7D 75.061 818 153 36 1680 2479 605689948 605689164 2.210000e-87 333.0
11 TraesCS7A01G509400 chr7D 79.158 499 81 14 1988 2479 605597349 605596867 1.330000e-84 324.0
12 TraesCS7A01G509400 chr7D 76.210 496 94 15 1988 2478 605610207 605609731 1.380000e-59 241.0
13 TraesCS7A01G509400 chr7D 90.299 134 13 0 805 938 605547186 605547053 3.950000e-40 176.0
14 TraesCS7A01G509400 chr7D 95.122 41 0 2 2480 2518 126018778 126018738 3.210000e-06 63.9
15 TraesCS7A01G509400 chr7B 89.052 1498 122 15 1024 2480 688547306 688548802 0.000000e+00 1820.0
16 TraesCS7A01G509400 chr7B 91.258 1041 75 9 2546 3574 688548899 688549935 0.000000e+00 1404.0
17 TraesCS7A01G509400 chr7B 74.610 1473 272 64 1046 2478 688821173 688819763 4.340000e-154 555.0
18 TraesCS7A01G509400 chr7B 87.578 322 38 2 979 1299 686138715 686138395 4.690000e-99 372.0
19 TraesCS7A01G509400 chr7B 75.424 826 152 37 1672 2479 688929343 688928551 1.700000e-93 353.0
20 TraesCS7A01G509400 chr7B 78.976 547 92 15 1050 1583 688930130 688929594 6.110000e-93 351.0
21 TraesCS7A01G509400 chr7B 92.593 243 17 1 3600 3841 688549931 688550173 7.900000e-92 348.0
22 TraesCS7A01G509400 chr7B 73.620 978 196 43 1142 2072 688919459 688918497 1.720000e-83 320.0
23 TraesCS7A01G509400 chr7B 84.733 262 40 0 1046 1307 688785572 688785311 2.950000e-66 263.0
24 TraesCS7A01G509400 chr7B 93.333 45 1 2 2476 2518 371726760 371726804 8.910000e-07 65.8
25 TraesCS7A01G509400 chr5D 92.245 245 19 0 1 245 396985685 396985929 7.900000e-92 348.0
26 TraesCS7A01G509400 chr5D 95.122 41 0 2 2480 2518 32229823 32229783 3.210000e-06 63.9
27 TraesCS7A01G509400 chr2D 90.612 245 22 1 1 245 498460991 498461234 1.330000e-84 324.0
28 TraesCS7A01G509400 chr4D 89.796 245 24 1 1 245 420931659 420931902 2.880000e-81 313.0
29 TraesCS7A01G509400 chr4D 88.745 231 26 0 15 245 388149062 388148832 2.260000e-72 283.0
30 TraesCS7A01G509400 chr1D 89.388 245 26 0 1 245 372466216 372466460 3.730000e-80 309.0
31 TraesCS7A01G509400 chr6D 88.889 243 27 0 3 245 107536773 107536531 2.240000e-77 300.0
32 TraesCS7A01G509400 chr4B 80.408 245 45 3 1 244 168965652 168965894 2.360000e-42 183.0
33 TraesCS7A01G509400 chr6A 80.000 180 34 2 1 179 47480495 47480673 8.670000e-27 132.0
34 TraesCS7A01G509400 chr3D 97.500 40 0 1 2480 2518 519177030 519176991 2.480000e-07 67.6
35 TraesCS7A01G509400 chr5B 95.122 41 0 2 2480 2518 613273487 613273527 3.210000e-06 63.9
36 TraesCS7A01G509400 chr3B 97.368 38 0 1 2482 2518 110739728 110739691 3.210000e-06 63.9
37 TraesCS7A01G509400 chr3A 95.000 40 0 2 2480 2517 388804896 388804935 1.150000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G509400 chr7A 696856628 696860471 3843 False 3260.000000 6067 100.000000 1 3844 2 chr7A.!!$F2 3843
1 TraesCS7A01G509400 chr7A 696981158 696982117 959 True 433.000000 433 75.617000 976 1905 1 chr7A.!!$R3 929
2 TraesCS7A01G509400 chr7D 605541947 605547186 5239 True 1218.000000 2630 91.884250 788 3837 4 chr7D.!!$R6 3049
3 TraesCS7A01G509400 chr7D 605646045 605647463 1418 True 553.000000 553 74.577000 1044 2478 1 chr7D.!!$R4 1434
4 TraesCS7A01G509400 chr7D 605689164 605689948 784 True 333.000000 333 75.061000 1680 2479 1 chr7D.!!$R5 799
5 TraesCS7A01G509400 chr7B 688547306 688550173 2867 False 1190.666667 1820 90.967667 1024 3841 3 chr7B.!!$F2 2817
6 TraesCS7A01G509400 chr7B 688819763 688821173 1410 True 555.000000 555 74.610000 1046 2478 1 chr7B.!!$R3 1432
7 TraesCS7A01G509400 chr7B 688928551 688930130 1579 True 352.000000 353 77.200000 1050 2479 2 chr7B.!!$R5 1429
8 TraesCS7A01G509400 chr7B 688918497 688919459 962 True 320.000000 320 73.620000 1142 2072 1 chr7B.!!$R4 930

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
131 132 0.179097 GAGAGAGGGGAACGCATCAC 60.179 60.0 6.34 0.47 46.88 3.06 F
731 732 0.256464 TGACCGTTTCCCAACTTGGT 59.744 50.0 7.06 0.00 35.17 3.67 F
2481 4910 0.239879 TCGAAGTTTTGCATTCCCGC 59.760 50.0 0.00 0.00 0.00 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1659 4034 0.039074 CGACAGCACGAGGTTTCTCT 60.039 55.000 0.0 0.0 37.86 3.10 R
2517 4946 2.302733 ACAAGGGATGGGAATGCAAAAC 59.697 45.455 0.0 0.0 0.00 2.43 R
3733 6268 0.038251 CAAGGCGTGTGCTGAGACTA 60.038 55.000 0.0 0.0 42.25 2.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 4.693915 CCAGGGGGAGGTGGGGAA 62.694 72.222 0.00 0.00 35.59 3.97
20 21 3.017581 CAGGGGGAGGTGGGGAAG 61.018 72.222 0.00 0.00 0.00 3.46
21 22 4.371231 AGGGGGAGGTGGGGAAGG 62.371 72.222 0.00 0.00 0.00 3.46
22 23 4.695791 GGGGGAGGTGGGGAAGGT 62.696 72.222 0.00 0.00 0.00 3.50
23 24 3.339093 GGGGAGGTGGGGAAGGTG 61.339 72.222 0.00 0.00 0.00 4.00
24 25 3.339093 GGGAGGTGGGGAAGGTGG 61.339 72.222 0.00 0.00 0.00 4.61
25 26 2.531942 GGAGGTGGGGAAGGTGGT 60.532 66.667 0.00 0.00 0.00 4.16
26 27 2.757077 GAGGTGGGGAAGGTGGTG 59.243 66.667 0.00 0.00 0.00 4.17
27 28 3.569200 GAGGTGGGGAAGGTGGTGC 62.569 68.421 0.00 0.00 0.00 5.01
28 29 3.897122 GGTGGGGAAGGTGGTGCA 61.897 66.667 0.00 0.00 0.00 4.57
29 30 2.282462 GTGGGGAAGGTGGTGCAG 60.282 66.667 0.00 0.00 0.00 4.41
30 31 3.579302 TGGGGAAGGTGGTGCAGG 61.579 66.667 0.00 0.00 0.00 4.85
31 32 3.580319 GGGGAAGGTGGTGCAGGT 61.580 66.667 0.00 0.00 0.00 4.00
32 33 2.282462 GGGAAGGTGGTGCAGGTG 60.282 66.667 0.00 0.00 0.00 4.00
33 34 2.282462 GGAAGGTGGTGCAGGTGG 60.282 66.667 0.00 0.00 0.00 4.61
34 35 2.282462 GAAGGTGGTGCAGGTGGG 60.282 66.667 0.00 0.00 0.00 4.61
35 36 4.603535 AAGGTGGTGCAGGTGGGC 62.604 66.667 0.00 0.00 0.00 5.36
64 65 2.668212 CGCTGCAAAGGACGGGAA 60.668 61.111 0.00 0.00 0.00 3.97
65 66 2.680913 CGCTGCAAAGGACGGGAAG 61.681 63.158 0.00 0.00 0.00 3.46
66 67 2.335712 GCTGCAAAGGACGGGAAGG 61.336 63.158 0.00 0.00 0.00 3.46
67 68 1.675641 CTGCAAAGGACGGGAAGGG 60.676 63.158 0.00 0.00 0.00 3.95
68 69 2.361230 GCAAAGGACGGGAAGGGG 60.361 66.667 0.00 0.00 0.00 4.79
69 70 2.355115 CAAAGGACGGGAAGGGGG 59.645 66.667 0.00 0.00 0.00 5.40
83 84 4.843331 GGGGGAGCATGGAGGGGA 62.843 72.222 0.00 0.00 0.00 4.81
84 85 2.696125 GGGGAGCATGGAGGGGAA 60.696 66.667 0.00 0.00 0.00 3.97
85 86 2.597903 GGGAGCATGGAGGGGAAC 59.402 66.667 0.00 0.00 0.00 3.62
86 87 2.190578 GGAGCATGGAGGGGAACG 59.809 66.667 0.00 0.00 0.00 3.95
87 88 2.367202 GGAGCATGGAGGGGAACGA 61.367 63.158 0.00 0.00 0.00 3.85
88 89 1.153349 GAGCATGGAGGGGAACGAC 60.153 63.158 0.00 0.00 0.00 4.34
89 90 2.511600 GCATGGAGGGGAACGACG 60.512 66.667 0.00 0.00 0.00 5.12
90 91 2.186903 CATGGAGGGGAACGACGG 59.813 66.667 0.00 0.00 0.00 4.79
91 92 3.081409 ATGGAGGGGAACGACGGG 61.081 66.667 0.00 0.00 0.00 5.28
114 115 4.824515 AGCGAGGAGGGGTCCGAG 62.825 72.222 0.00 0.00 34.28 4.63
115 116 4.816984 GCGAGGAGGGGTCCGAGA 62.817 72.222 0.00 0.00 34.28 4.04
116 117 2.517402 CGAGGAGGGGTCCGAGAG 60.517 72.222 0.00 0.00 34.28 3.20
117 118 3.008408 GAGGAGGGGTCCGAGAGA 58.992 66.667 0.00 0.00 34.28 3.10
118 119 1.152839 GAGGAGGGGTCCGAGAGAG 60.153 68.421 0.00 0.00 34.28 3.20
119 120 2.123640 GGAGGGGTCCGAGAGAGG 60.124 72.222 0.00 0.00 0.00 3.69
120 121 2.123640 GAGGGGTCCGAGAGAGGG 60.124 72.222 0.00 0.00 0.00 4.30
121 122 3.742248 GAGGGGTCCGAGAGAGGGG 62.742 73.684 0.00 0.00 0.00 4.79
122 123 3.752167 GGGGTCCGAGAGAGGGGA 61.752 72.222 0.00 0.00 0.00 4.81
123 124 2.363361 GGGTCCGAGAGAGGGGAA 59.637 66.667 0.00 0.00 33.27 3.97
124 125 2.059190 GGGTCCGAGAGAGGGGAAC 61.059 68.421 0.00 0.00 39.39 3.62
125 126 2.416432 GGTCCGAGAGAGGGGAACG 61.416 68.421 0.00 0.00 33.27 3.95
126 127 2.754658 TCCGAGAGAGGGGAACGC 60.755 66.667 0.00 0.00 43.76 4.84
127 128 3.068691 CCGAGAGAGGGGAACGCA 61.069 66.667 0.00 0.00 46.88 5.24
128 129 2.427245 CCGAGAGAGGGGAACGCAT 61.427 63.158 0.00 0.00 46.88 4.73
129 130 1.066587 CGAGAGAGGGGAACGCATC 59.933 63.158 0.00 0.00 46.88 3.91
130 131 1.667154 CGAGAGAGGGGAACGCATCA 61.667 60.000 6.34 0.00 46.88 3.07
131 132 0.179097 GAGAGAGGGGAACGCATCAC 60.179 60.000 6.34 0.47 46.88 3.06
135 136 4.404098 GGGGAACGCATCACCGGT 62.404 66.667 0.00 0.00 43.22 5.28
136 137 2.818274 GGGAACGCATCACCGGTC 60.818 66.667 2.59 0.00 43.87 4.79
137 138 3.186047 GGAACGCATCACCGGTCG 61.186 66.667 2.59 8.24 45.46 4.79
138 139 3.186047 GAACGCATCACCGGTCGG 61.186 66.667 16.61 7.97 35.01 4.79
150 151 4.767255 GGTCGGTGGAGCAGCAGG 62.767 72.222 0.00 0.00 40.40 4.85
151 152 4.767255 GTCGGTGGAGCAGCAGGG 62.767 72.222 0.00 0.00 0.00 4.45
153 154 4.463879 CGGTGGAGCAGCAGGGAG 62.464 72.222 0.00 0.00 0.00 4.30
154 155 3.005539 GGTGGAGCAGCAGGGAGA 61.006 66.667 0.00 0.00 0.00 3.71
155 156 2.583520 GTGGAGCAGCAGGGAGAG 59.416 66.667 0.00 0.00 0.00 3.20
156 157 3.397439 TGGAGCAGCAGGGAGAGC 61.397 66.667 0.00 0.00 0.00 4.09
157 158 3.397439 GGAGCAGCAGGGAGAGCA 61.397 66.667 0.00 0.00 0.00 4.26
158 159 2.187424 GAGCAGCAGGGAGAGCAG 59.813 66.667 0.00 0.00 0.00 4.24
159 160 4.098722 AGCAGCAGGGAGAGCAGC 62.099 66.667 0.00 0.00 43.76 5.25
161 162 4.834453 CAGCAGGGAGAGCAGCGG 62.834 72.222 0.00 0.00 0.00 5.52
185 186 4.767255 CCTCCGCCAGCTGGTCAC 62.767 72.222 32.81 16.22 37.57 3.67
186 187 4.767255 CTCCGCCAGCTGGTCACC 62.767 72.222 32.81 15.85 37.57 4.02
189 190 4.680237 CGCCAGCTGGTCACCGAA 62.680 66.667 32.81 0.00 37.57 4.30
190 191 2.281484 GCCAGCTGGTCACCGAAA 60.281 61.111 32.81 0.00 37.57 3.46
191 192 2.617274 GCCAGCTGGTCACCGAAAC 61.617 63.158 32.81 10.00 37.57 2.78
192 193 2.317609 CCAGCTGGTCACCGAAACG 61.318 63.158 25.53 0.00 0.00 3.60
193 194 2.665185 AGCTGGTCACCGAAACGC 60.665 61.111 0.00 0.00 0.00 4.84
194 195 3.723348 GCTGGTCACCGAAACGCC 61.723 66.667 0.00 0.00 0.00 5.68
195 196 3.411351 CTGGTCACCGAAACGCCG 61.411 66.667 0.00 0.00 0.00 6.46
204 205 4.468689 GAAACGCCGGGGAGGGAG 62.469 72.222 27.23 0.00 41.48 4.30
608 609 3.532501 GGAGAAGCCGAGGAGAGG 58.467 66.667 0.00 0.00 0.00 3.69
609 610 2.131067 GGAGAAGCCGAGGAGAGGG 61.131 68.421 0.00 0.00 0.00 4.30
630 631 4.195334 GGGCGGGCATCAGGACAT 62.195 66.667 3.27 0.00 0.00 3.06
631 632 2.592861 GGCGGGCATCAGGACATC 60.593 66.667 0.00 0.00 0.00 3.06
632 633 2.969238 GCGGGCATCAGGACATCG 60.969 66.667 0.00 0.00 0.00 3.84
633 634 2.280389 CGGGCATCAGGACATCGG 60.280 66.667 0.00 0.00 0.00 4.18
634 635 2.592861 GGGCATCAGGACATCGGC 60.593 66.667 0.00 0.00 0.00 5.54
635 636 2.969238 GGCATCAGGACATCGGCG 60.969 66.667 0.00 0.00 0.00 6.46
636 637 2.106938 GCATCAGGACATCGGCGA 59.893 61.111 13.87 13.87 0.00 5.54
637 638 1.953138 GCATCAGGACATCGGCGAG 60.953 63.158 17.22 10.20 0.00 5.03
638 639 1.300465 CATCAGGACATCGGCGAGG 60.300 63.158 20.97 20.97 0.00 4.63
639 640 2.502492 ATCAGGACATCGGCGAGGG 61.502 63.158 25.96 17.35 0.00 4.30
640 641 4.227134 CAGGACATCGGCGAGGGG 62.227 72.222 25.96 14.79 0.00 4.79
694 695 3.551407 GAGGTCGCCCATCCCCTC 61.551 72.222 0.00 0.00 36.98 4.30
695 696 4.095400 AGGTCGCCCATCCCCTCT 62.095 66.667 0.00 0.00 0.00 3.69
696 697 3.090532 GGTCGCCCATCCCCTCTT 61.091 66.667 0.00 0.00 0.00 2.85
697 698 2.506472 GTCGCCCATCCCCTCTTC 59.494 66.667 0.00 0.00 0.00 2.87
698 699 2.040442 TCGCCCATCCCCTCTTCA 59.960 61.111 0.00 0.00 0.00 3.02
699 700 1.384502 TCGCCCATCCCCTCTTCAT 60.385 57.895 0.00 0.00 0.00 2.57
700 701 1.072159 CGCCCATCCCCTCTTCATC 59.928 63.158 0.00 0.00 0.00 2.92
701 702 1.458045 GCCCATCCCCTCTTCATCC 59.542 63.158 0.00 0.00 0.00 3.51
702 703 1.355718 GCCCATCCCCTCTTCATCCA 61.356 60.000 0.00 0.00 0.00 3.41
703 704 0.769873 CCCATCCCCTCTTCATCCAG 59.230 60.000 0.00 0.00 0.00 3.86
704 705 1.516110 CCATCCCCTCTTCATCCAGT 58.484 55.000 0.00 0.00 0.00 4.00
705 706 1.142465 CCATCCCCTCTTCATCCAGTG 59.858 57.143 0.00 0.00 0.00 3.66
706 707 1.842562 CATCCCCTCTTCATCCAGTGT 59.157 52.381 0.00 0.00 0.00 3.55
707 708 1.573108 TCCCCTCTTCATCCAGTGTC 58.427 55.000 0.00 0.00 0.00 3.67
708 709 1.203300 TCCCCTCTTCATCCAGTGTCA 60.203 52.381 0.00 0.00 0.00 3.58
709 710 1.842562 CCCCTCTTCATCCAGTGTCAT 59.157 52.381 0.00 0.00 0.00 3.06
710 711 2.240667 CCCCTCTTCATCCAGTGTCATT 59.759 50.000 0.00 0.00 0.00 2.57
711 712 3.308688 CCCCTCTTCATCCAGTGTCATTT 60.309 47.826 0.00 0.00 0.00 2.32
712 713 4.338879 CCCTCTTCATCCAGTGTCATTTT 58.661 43.478 0.00 0.00 0.00 1.82
713 714 4.157289 CCCTCTTCATCCAGTGTCATTTTG 59.843 45.833 0.00 0.00 0.00 2.44
714 715 5.005740 CCTCTTCATCCAGTGTCATTTTGA 58.994 41.667 0.00 0.00 0.00 2.69
716 717 4.761739 TCTTCATCCAGTGTCATTTTGACC 59.238 41.667 5.27 0.00 46.40 4.02
717 718 3.073678 TCATCCAGTGTCATTTTGACCG 58.926 45.455 5.27 0.00 46.40 4.79
718 719 2.631160 TCCAGTGTCATTTTGACCGT 57.369 45.000 5.27 0.00 46.40 4.83
719 720 2.925724 TCCAGTGTCATTTTGACCGTT 58.074 42.857 5.27 0.00 46.40 4.44
720 721 3.283751 TCCAGTGTCATTTTGACCGTTT 58.716 40.909 5.27 0.00 46.40 3.60
721 722 3.314080 TCCAGTGTCATTTTGACCGTTTC 59.686 43.478 5.27 0.00 46.40 2.78
722 723 3.550030 CCAGTGTCATTTTGACCGTTTCC 60.550 47.826 5.27 0.00 46.40 3.13
723 724 2.621526 AGTGTCATTTTGACCGTTTCCC 59.378 45.455 5.27 0.00 46.40 3.97
724 725 2.359531 GTGTCATTTTGACCGTTTCCCA 59.640 45.455 5.27 0.00 46.40 4.37
725 726 3.024547 TGTCATTTTGACCGTTTCCCAA 58.975 40.909 5.27 0.00 46.40 4.12
726 727 3.181485 TGTCATTTTGACCGTTTCCCAAC 60.181 43.478 5.27 0.00 46.40 3.77
727 728 3.067601 GTCATTTTGACCGTTTCCCAACT 59.932 43.478 0.00 0.00 41.37 3.16
728 729 3.702045 TCATTTTGACCGTTTCCCAACTT 59.298 39.130 0.00 0.00 0.00 2.66
729 730 3.512033 TTTTGACCGTTTCCCAACTTG 57.488 42.857 0.00 0.00 0.00 3.16
730 731 1.394618 TTGACCGTTTCCCAACTTGG 58.605 50.000 0.12 0.12 37.25 3.61
731 732 0.256464 TGACCGTTTCCCAACTTGGT 59.744 50.000 7.06 0.00 35.17 3.67
732 733 0.666374 GACCGTTTCCCAACTTGGTG 59.334 55.000 7.06 0.00 35.17 4.17
733 734 0.256464 ACCGTTTCCCAACTTGGTGA 59.744 50.000 7.06 1.50 35.17 4.02
734 735 1.133606 ACCGTTTCCCAACTTGGTGAT 60.134 47.619 7.06 0.00 35.17 3.06
735 736 1.269448 CCGTTTCCCAACTTGGTGATG 59.731 52.381 7.06 0.00 35.17 3.07
736 737 1.953686 CGTTTCCCAACTTGGTGATGT 59.046 47.619 7.06 0.00 35.17 3.06
737 738 2.287547 CGTTTCCCAACTTGGTGATGTG 60.288 50.000 7.06 0.00 35.17 3.21
738 739 2.955660 GTTTCCCAACTTGGTGATGTGA 59.044 45.455 7.06 0.00 35.17 3.58
739 740 3.304911 TTCCCAACTTGGTGATGTGAA 57.695 42.857 7.06 0.00 35.17 3.18
740 741 3.304911 TCCCAACTTGGTGATGTGAAA 57.695 42.857 7.06 0.00 35.17 2.69
741 742 3.636679 TCCCAACTTGGTGATGTGAAAA 58.363 40.909 7.06 0.00 35.17 2.29
742 743 3.636300 TCCCAACTTGGTGATGTGAAAAG 59.364 43.478 7.06 0.00 35.17 2.27
743 744 3.384467 CCCAACTTGGTGATGTGAAAAGT 59.616 43.478 7.06 0.00 35.17 2.66
744 745 4.362279 CCAACTTGGTGATGTGAAAAGTG 58.638 43.478 0.00 0.00 31.69 3.16
745 746 4.142182 CCAACTTGGTGATGTGAAAAGTGT 60.142 41.667 0.00 0.00 31.69 3.55
746 747 5.067153 CCAACTTGGTGATGTGAAAAGTGTA 59.933 40.000 0.00 0.00 31.69 2.90
747 748 5.751243 ACTTGGTGATGTGAAAAGTGTAC 57.249 39.130 0.00 0.00 30.17 2.90
748 749 5.189928 ACTTGGTGATGTGAAAAGTGTACA 58.810 37.500 0.00 0.00 30.17 2.90
749 750 5.650266 ACTTGGTGATGTGAAAAGTGTACAA 59.350 36.000 0.00 0.00 30.17 2.41
750 751 5.749596 TGGTGATGTGAAAAGTGTACAAG 57.250 39.130 0.00 0.00 0.00 3.16
751 752 4.578516 TGGTGATGTGAAAAGTGTACAAGG 59.421 41.667 0.00 0.00 0.00 3.61
752 753 4.537015 GTGATGTGAAAAGTGTACAAGGC 58.463 43.478 0.00 0.00 0.00 4.35
753 754 3.568007 TGATGTGAAAAGTGTACAAGGCC 59.432 43.478 0.00 0.00 0.00 5.19
754 755 3.290948 TGTGAAAAGTGTACAAGGCCT 57.709 42.857 0.00 0.00 0.00 5.19
755 756 3.626930 TGTGAAAAGTGTACAAGGCCTT 58.373 40.909 13.78 13.78 0.00 4.35
756 757 3.380004 TGTGAAAAGTGTACAAGGCCTTG 59.620 43.478 38.30 38.30 45.58 3.61
757 758 3.630312 GTGAAAAGTGTACAAGGCCTTGA 59.370 43.478 44.50 27.83 42.93 3.02
758 759 3.630312 TGAAAAGTGTACAAGGCCTTGAC 59.370 43.478 44.50 34.73 42.93 3.18
759 760 1.878953 AAGTGTACAAGGCCTTGACG 58.121 50.000 44.50 24.17 42.93 4.35
760 761 0.756903 AGTGTACAAGGCCTTGACGT 59.243 50.000 44.50 28.23 42.93 4.34
761 762 1.145803 GTGTACAAGGCCTTGACGTC 58.854 55.000 44.50 29.68 42.93 4.34
762 763 0.753867 TGTACAAGGCCTTGACGTCA 59.246 50.000 44.50 31.42 42.93 4.35
763 764 1.139256 TGTACAAGGCCTTGACGTCAA 59.861 47.619 44.50 28.07 42.93 3.18
764 765 2.215196 GTACAAGGCCTTGACGTCAAA 58.785 47.619 44.50 20.67 42.93 2.69
765 766 1.757682 ACAAGGCCTTGACGTCAAAA 58.242 45.000 44.50 11.02 42.93 2.44
766 767 2.096248 ACAAGGCCTTGACGTCAAAAA 58.904 42.857 44.50 10.26 42.93 1.94
787 788 7.759489 AAAAATGGTAGTAACATTCTGCTCA 57.241 32.000 13.77 0.00 37.55 4.26
788 789 6.992063 AAATGGTAGTAACATTCTGCTCAG 57.008 37.500 13.77 0.00 37.55 3.35
789 790 5.683876 ATGGTAGTAACATTCTGCTCAGT 57.316 39.130 0.00 0.00 0.00 3.41
790 791 5.483685 TGGTAGTAACATTCTGCTCAGTT 57.516 39.130 0.00 0.00 0.00 3.16
791 792 6.599356 TGGTAGTAACATTCTGCTCAGTTA 57.401 37.500 0.00 0.00 0.00 2.24
792 793 7.182817 TGGTAGTAACATTCTGCTCAGTTAT 57.817 36.000 0.00 0.00 0.00 1.89
793 794 7.265673 TGGTAGTAACATTCTGCTCAGTTATC 58.734 38.462 0.00 0.00 0.00 1.75
794 795 7.124298 TGGTAGTAACATTCTGCTCAGTTATCT 59.876 37.037 0.00 0.00 0.00 1.98
795 796 7.982354 GGTAGTAACATTCTGCTCAGTTATCTT 59.018 37.037 0.00 0.00 0.00 2.40
796 797 9.372369 GTAGTAACATTCTGCTCAGTTATCTTT 57.628 33.333 0.00 0.00 0.00 2.52
797 798 8.485976 AGTAACATTCTGCTCAGTTATCTTTC 57.514 34.615 0.00 0.00 0.00 2.62
798 799 8.317679 AGTAACATTCTGCTCAGTTATCTTTCT 58.682 33.333 0.00 0.00 0.00 2.52
799 800 7.992754 AACATTCTGCTCAGTTATCTTTCTT 57.007 32.000 0.00 0.00 0.00 2.52
800 801 7.992754 ACATTCTGCTCAGTTATCTTTCTTT 57.007 32.000 0.00 0.00 0.00 2.52
801 802 8.401490 ACATTCTGCTCAGTTATCTTTCTTTT 57.599 30.769 0.00 0.00 0.00 2.27
802 803 8.854117 ACATTCTGCTCAGTTATCTTTCTTTTT 58.146 29.630 0.00 0.00 0.00 1.94
848 849 1.422531 TTGAGCATGGGCCAAAGTTT 58.577 45.000 11.89 0.00 42.56 2.66
853 854 2.497273 AGCATGGGCCAAAGTTTGTATC 59.503 45.455 11.89 3.50 42.56 2.24
873 3019 0.815615 GATTCGTGGCCCAGGTCATC 60.816 60.000 0.00 3.38 30.18 2.92
883 3029 1.372087 CCAGGTCATCGCCTTCAAGC 61.372 60.000 0.00 0.00 36.58 4.01
1207 3364 0.999406 CGACGTCGATGCCTTCAAAT 59.001 50.000 33.35 0.00 43.02 2.32
1208 3365 1.393539 CGACGTCGATGCCTTCAAATT 59.606 47.619 33.35 0.00 43.02 1.82
1497 3692 1.067283 CATCTGACGACACTGGAGCTT 60.067 52.381 0.00 0.00 0.00 3.74
1557 3752 3.927481 GAGCTGCCCCAACCTGGAC 62.927 68.421 0.00 0.00 40.96 4.02
1559 3754 2.765969 CTGCCCCAACCTGGACAT 59.234 61.111 0.00 0.00 40.96 3.06
1708 4083 3.280295 CCAAGCCTCGTCTACTTAGAGA 58.720 50.000 0.00 0.00 34.13 3.10
1781 4156 4.860907 GCAAACAGCATCTATCAAGTTTGG 59.139 41.667 15.03 1.33 43.43 3.28
1890 4281 2.727916 GCCTCAAGCGGTATGTTTTTCG 60.728 50.000 0.00 0.00 0.00 3.46
1942 4357 3.374058 ACATACTATGGTTGTTGAAGCGC 59.626 43.478 0.00 0.00 31.82 5.92
2263 4692 7.148120 CCAGATGAACATGCTAAAGAAACAGAT 60.148 37.037 0.00 0.00 0.00 2.90
2344 4773 8.747538 AGATCAGATGTCATGAAAATGATGAA 57.252 30.769 17.43 0.00 31.65 2.57
2365 4794 5.808030 TGAACGAGTTCCCAAAATTTTGAAC 59.192 36.000 28.44 23.69 38.30 3.18
2416 4845 2.922335 GCAAATCAACGTCAAGGAAGGC 60.922 50.000 0.00 0.00 0.00 4.35
2425 4854 2.238521 GTCAAGGAAGGCAATTGGTCA 58.761 47.619 7.72 0.00 0.00 4.02
2473 4902 7.132863 AGTCTTTCTACATTTCGAAGTTTTGC 58.867 34.615 0.00 0.00 0.00 3.68
2474 4903 6.910433 GTCTTTCTACATTTCGAAGTTTTGCA 59.090 34.615 0.00 0.00 0.00 4.08
2475 4904 7.591426 GTCTTTCTACATTTCGAAGTTTTGCAT 59.409 33.333 0.00 0.00 0.00 3.96
2477 4906 7.851822 TTCTACATTTCGAAGTTTTGCATTC 57.148 32.000 0.00 0.00 0.00 2.67
2480 4909 2.697431 TTCGAAGTTTTGCATTCCCG 57.303 45.000 0.00 0.00 0.00 5.14
2481 4910 0.239879 TCGAAGTTTTGCATTCCCGC 59.760 50.000 0.00 0.00 0.00 6.13
2482 4911 1.065031 CGAAGTTTTGCATTCCCGCG 61.065 55.000 0.00 0.00 33.35 6.46
2483 4912 0.239879 GAAGTTTTGCATTCCCGCGA 59.760 50.000 8.23 0.00 33.35 5.87
2484 4913 0.671251 AAGTTTTGCATTCCCGCGAA 59.329 45.000 8.23 0.00 33.36 4.70
2485 4914 0.887933 AGTTTTGCATTCCCGCGAAT 59.112 45.000 8.23 0.00 39.39 3.34
2486 4915 2.088423 AGTTTTGCATTCCCGCGAATA 58.912 42.857 8.23 0.00 36.54 1.75
2487 4916 2.159435 AGTTTTGCATTCCCGCGAATAC 60.159 45.455 8.23 0.00 36.54 1.89
2488 4917 0.375454 TTTGCATTCCCGCGAATACG 59.625 50.000 8.23 0.00 36.54 3.06
2514 4943 7.841486 CAAAGCTTGCATATCTTTCATTGATG 58.159 34.615 0.00 0.00 0.00 3.07
2515 4944 6.954487 AGCTTGCATATCTTTCATTGATGA 57.046 33.333 0.00 0.00 34.44 2.92
2516 4945 7.342769 AGCTTGCATATCTTTCATTGATGAA 57.657 32.000 2.39 2.39 44.42 2.57
2517 4946 7.426410 AGCTTGCATATCTTTCATTGATGAAG 58.574 34.615 6.53 2.81 46.34 3.02
2518 4947 7.068348 AGCTTGCATATCTTTCATTGATGAAGT 59.932 33.333 6.53 1.55 46.34 3.01
2519 4948 7.705325 GCTTGCATATCTTTCATTGATGAAGTT 59.295 33.333 6.53 0.26 46.34 2.66
2520 4949 9.582431 CTTGCATATCTTTCATTGATGAAGTTT 57.418 29.630 6.53 0.00 46.34 2.66
2551 5062 5.890985 CCCATCCCTTGTATGTTTGTATGAA 59.109 40.000 0.00 0.00 0.00 2.57
2571 5082 7.829378 ATGAAAAATTACTAGTCTCGGTGAC 57.171 36.000 0.00 2.07 45.67 3.67
2723 5238 2.030457 ACGTTCTTCTTGCTTCACAACG 59.970 45.455 0.00 0.00 40.65 4.10
2736 5251 6.326375 TGCTTCACAACGTTAAAATCAAGTT 58.674 32.000 0.00 0.00 0.00 2.66
2816 5331 3.006112 TCCGAGCAGTCAGACTATTCT 57.994 47.619 1.67 0.79 0.00 2.40
2832 5347 9.781834 CAGACTATTCTTATTCAGATACGGATC 57.218 37.037 0.00 0.00 0.00 3.36
2848 5363 4.369182 ACGGATCAGTCGGATTAACATTC 58.631 43.478 0.00 0.00 36.00 2.67
2854 5369 3.930229 CAGTCGGATTAACATTCGGAACA 59.070 43.478 0.00 0.00 31.47 3.18
2864 5379 7.566760 TTAACATTCGGAACATTGCTATGAT 57.433 32.000 15.23 2.54 35.65 2.45
2867 5382 7.566760 ACATTCGGAACATTGCTATGATTTA 57.433 32.000 15.23 0.00 35.65 1.40
2869 5384 8.632679 ACATTCGGAACATTGCTATGATTTATT 58.367 29.630 15.23 0.00 35.65 1.40
2895 5411 3.063510 TGCTTCATCAGAGGACCTTTG 57.936 47.619 5.65 5.65 0.00 2.77
2898 5414 0.250234 TCATCAGAGGACCTTTGGCG 59.750 55.000 11.93 4.10 0.00 5.69
2906 5422 3.641436 AGAGGACCTTTGGCGAAATTTTT 59.359 39.130 0.00 0.00 0.00 1.94
2910 5426 5.069914 AGGACCTTTGGCGAAATTTTTAGTT 59.930 36.000 0.00 0.00 0.00 2.24
2919 5435 5.115021 GGCGAAATTTTTAGTTGTCGAGTTG 59.885 40.000 0.00 0.00 0.00 3.16
2921 5437 6.412653 GCGAAATTTTTAGTTGTCGAGTTGAA 59.587 34.615 0.00 0.00 0.00 2.69
2942 5458 5.832595 TGAAACCTTCTCAATTCAATCCACA 59.167 36.000 0.00 0.00 0.00 4.17
3013 5530 9.443283 CATGAAGCTATCTTATTTGCTTTGTAC 57.557 33.333 0.00 0.00 44.47 2.90
3073 5590 7.734924 TCAGGAACATGTTATGATATTCTGC 57.265 36.000 11.95 0.00 0.00 4.26
3111 5628 7.093945 GGTGTTTCATTTATTCACTACCCATGT 60.094 37.037 0.00 0.00 0.00 3.21
3114 5631 8.519526 GTTTCATTTATTCACTACCCATGTTGA 58.480 33.333 0.00 0.00 0.00 3.18
3142 5659 1.817881 GCTAAAGCATGGCATGGCA 59.182 52.632 27.48 25.52 41.59 4.92
3144 5661 1.872237 GCTAAAGCATGGCATGGCATG 60.872 52.381 42.44 42.44 41.59 4.06
3145 5662 0.753867 TAAAGCATGGCATGGCATGG 59.246 50.000 44.47 32.20 0.00 3.66
3187 5704 2.928116 GAGGTGCACGTCAGGTAATAAC 59.072 50.000 29.49 3.89 0.00 1.89
3194 5711 4.622740 GCACGTCAGGTAATAACGTACTTT 59.377 41.667 0.00 0.00 46.91 2.66
3199 5716 6.909357 CGTCAGGTAATAACGTACTTTAGGAG 59.091 42.308 0.00 0.00 0.00 3.69
3205 5722 8.972349 GGTAATAACGTACTTTAGGAGTAATGC 58.028 37.037 0.00 0.00 42.31 3.56
3226 5752 0.387202 CGCTAGATGAGTCCCTGTGG 59.613 60.000 0.00 0.00 0.00 4.17
3362 5896 2.536803 CGAATTTGCACTTATGGCATGC 59.463 45.455 9.90 9.90 41.58 4.06
3516 6050 6.801539 TGTGTTATTTGAACCAGATGAGTC 57.198 37.500 0.00 0.00 0.00 3.36
3520 6054 2.743636 TTGAACCAGATGAGTCGGTC 57.256 50.000 0.00 0.00 32.58 4.79
3545 6079 6.596497 CCAGGCATGCTAAAAAGATGAAAAAT 59.404 34.615 18.92 0.00 0.00 1.82
3613 6147 7.080724 CGGTTTTTACTAACGTTCTCTAGACT 58.919 38.462 2.82 0.00 0.00 3.24
3632 6166 9.166173 TCTAGACTGGAAATATGTGTGAATTTG 57.834 33.333 0.00 0.00 0.00 2.32
3633 6167 9.166173 CTAGACTGGAAATATGTGTGAATTTGA 57.834 33.333 0.00 0.00 0.00 2.69
3634 6168 7.820648 AGACTGGAAATATGTGTGAATTTGAC 58.179 34.615 0.00 0.00 0.00 3.18
3635 6169 7.667219 AGACTGGAAATATGTGTGAATTTGACT 59.333 33.333 0.00 0.00 0.00 3.41
3677 6212 1.202710 TGCACCGGCTAAGAGAAACAA 60.203 47.619 0.00 0.00 41.91 2.83
3733 6268 2.703536 TCACACACCACCTACATGAAGT 59.296 45.455 0.00 0.00 0.00 3.01
3802 6337 1.932604 GCTTCGGTGTGACACTCTCTG 60.933 57.143 16.07 4.12 34.40 3.35
3816 6351 2.284331 TCTGGCCCTAACTCCGCA 60.284 61.111 0.00 0.00 0.00 5.69
3837 6372 4.214971 GCAGAGTCAAAATTGAGAAGCTGA 59.785 41.667 13.84 0.00 37.98 4.26
3841 6376 5.371526 AGTCAAAATTGAGAAGCTGACAGA 58.628 37.500 6.65 0.00 37.98 3.41
3842 6377 5.238214 AGTCAAAATTGAGAAGCTGACAGAC 59.762 40.000 6.65 0.00 37.98 3.51
3843 6378 4.212004 TCAAAATTGAGAAGCTGACAGACG 59.788 41.667 6.65 0.00 32.50 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 4.695791 ACCTTCCCCACCTCCCCC 62.696 72.222 0.00 0.00 0.00 5.40
7 8 3.339093 CCACCTTCCCCACCTCCC 61.339 72.222 0.00 0.00 0.00 4.30
8 9 2.531942 ACCACCTTCCCCACCTCC 60.532 66.667 0.00 0.00 0.00 4.30
9 10 2.757077 CACCACCTTCCCCACCTC 59.243 66.667 0.00 0.00 0.00 3.85
10 11 3.580319 GCACCACCTTCCCCACCT 61.580 66.667 0.00 0.00 0.00 4.00
11 12 3.868200 CTGCACCACCTTCCCCACC 62.868 68.421 0.00 0.00 0.00 4.61
12 13 2.282462 CTGCACCACCTTCCCCAC 60.282 66.667 0.00 0.00 0.00 4.61
13 14 3.579302 CCTGCACCACCTTCCCCA 61.579 66.667 0.00 0.00 0.00 4.96
14 15 3.580319 ACCTGCACCACCTTCCCC 61.580 66.667 0.00 0.00 0.00 4.81
15 16 2.282462 CACCTGCACCACCTTCCC 60.282 66.667 0.00 0.00 0.00 3.97
16 17 2.282462 CCACCTGCACCACCTTCC 60.282 66.667 0.00 0.00 0.00 3.46
17 18 2.282462 CCCACCTGCACCACCTTC 60.282 66.667 0.00 0.00 0.00 3.46
18 19 4.603535 GCCCACCTGCACCACCTT 62.604 66.667 0.00 0.00 0.00 3.50
47 48 2.668212 TTCCCGTCCTTTGCAGCG 60.668 61.111 0.00 0.00 0.00 5.18
48 49 2.335712 CCTTCCCGTCCTTTGCAGC 61.336 63.158 0.00 0.00 0.00 5.25
49 50 1.675641 CCCTTCCCGTCCTTTGCAG 60.676 63.158 0.00 0.00 0.00 4.41
50 51 2.434331 CCCTTCCCGTCCTTTGCA 59.566 61.111 0.00 0.00 0.00 4.08
51 52 2.361230 CCCCTTCCCGTCCTTTGC 60.361 66.667 0.00 0.00 0.00 3.68
52 53 2.355115 CCCCCTTCCCGTCCTTTG 59.645 66.667 0.00 0.00 0.00 2.77
66 67 4.843331 TCCCCTCCATGCTCCCCC 62.843 72.222 0.00 0.00 0.00 5.40
67 68 2.696125 TTCCCCTCCATGCTCCCC 60.696 66.667 0.00 0.00 0.00 4.81
68 69 2.597903 GTTCCCCTCCATGCTCCC 59.402 66.667 0.00 0.00 0.00 4.30
69 70 2.190578 CGTTCCCCTCCATGCTCC 59.809 66.667 0.00 0.00 0.00 4.70
70 71 1.153349 GTCGTTCCCCTCCATGCTC 60.153 63.158 0.00 0.00 0.00 4.26
71 72 2.990479 GTCGTTCCCCTCCATGCT 59.010 61.111 0.00 0.00 0.00 3.79
72 73 2.511600 CGTCGTTCCCCTCCATGC 60.512 66.667 0.00 0.00 0.00 4.06
73 74 2.186903 CCGTCGTTCCCCTCCATG 59.813 66.667 0.00 0.00 0.00 3.66
74 75 3.081409 CCCGTCGTTCCCCTCCAT 61.081 66.667 0.00 0.00 0.00 3.41
97 98 4.824515 CTCGGACCCCTCCTCGCT 62.825 72.222 0.00 0.00 33.79 4.93
98 99 4.816984 TCTCGGACCCCTCCTCGC 62.817 72.222 0.00 0.00 33.79 5.03
99 100 2.517402 CTCTCGGACCCCTCCTCG 60.517 72.222 0.00 0.00 33.79 4.63
100 101 1.152839 CTCTCTCGGACCCCTCCTC 60.153 68.421 0.00 0.00 33.79 3.71
101 102 2.695970 CCTCTCTCGGACCCCTCCT 61.696 68.421 0.00 0.00 33.79 3.69
102 103 2.123640 CCTCTCTCGGACCCCTCC 60.124 72.222 0.00 0.00 0.00 4.30
103 104 2.123640 CCCTCTCTCGGACCCCTC 60.124 72.222 0.00 0.00 0.00 4.30
104 105 3.756783 CCCCTCTCTCGGACCCCT 61.757 72.222 0.00 0.00 0.00 4.79
105 106 3.312989 TTCCCCTCTCTCGGACCCC 62.313 68.421 0.00 0.00 0.00 4.95
106 107 2.059190 GTTCCCCTCTCTCGGACCC 61.059 68.421 0.00 0.00 0.00 4.46
107 108 2.416432 CGTTCCCCTCTCTCGGACC 61.416 68.421 0.00 0.00 0.00 4.46
108 109 3.066233 GCGTTCCCCTCTCTCGGAC 62.066 68.421 0.00 0.00 0.00 4.79
109 110 2.754658 GCGTTCCCCTCTCTCGGA 60.755 66.667 0.00 0.00 0.00 4.55
110 111 2.356818 GATGCGTTCCCCTCTCTCGG 62.357 65.000 0.00 0.00 0.00 4.63
111 112 1.066587 GATGCGTTCCCCTCTCTCG 59.933 63.158 0.00 0.00 0.00 4.04
112 113 0.179097 GTGATGCGTTCCCCTCTCTC 60.179 60.000 0.00 0.00 0.00 3.20
113 114 1.617947 GGTGATGCGTTCCCCTCTCT 61.618 60.000 0.00 0.00 0.00 3.10
114 115 1.153349 GGTGATGCGTTCCCCTCTC 60.153 63.158 0.00 0.00 0.00 3.20
115 116 2.990479 GGTGATGCGTTCCCCTCT 59.010 61.111 0.00 0.00 0.00 3.69
116 117 2.511600 CGGTGATGCGTTCCCCTC 60.512 66.667 0.00 0.00 0.00 4.30
117 118 4.096003 CCGGTGATGCGTTCCCCT 62.096 66.667 0.00 0.00 0.00 4.79
118 119 4.404098 ACCGGTGATGCGTTCCCC 62.404 66.667 6.12 0.00 0.00 4.81
119 120 2.818274 GACCGGTGATGCGTTCCC 60.818 66.667 14.63 0.00 0.00 3.97
120 121 3.186047 CGACCGGTGATGCGTTCC 61.186 66.667 14.63 0.00 0.00 3.62
121 122 3.186047 CCGACCGGTGATGCGTTC 61.186 66.667 14.63 0.00 0.00 3.95
133 134 4.767255 CCTGCTGCTCCACCGACC 62.767 72.222 0.00 0.00 0.00 4.79
134 135 4.767255 CCCTGCTGCTCCACCGAC 62.767 72.222 0.00 0.00 0.00 4.79
136 137 4.463879 CTCCCTGCTGCTCCACCG 62.464 72.222 0.00 0.00 0.00 4.94
137 138 3.005539 TCTCCCTGCTGCTCCACC 61.006 66.667 0.00 0.00 0.00 4.61
138 139 2.583520 CTCTCCCTGCTGCTCCAC 59.416 66.667 0.00 0.00 0.00 4.02
139 140 3.397439 GCTCTCCCTGCTGCTCCA 61.397 66.667 0.00 0.00 0.00 3.86
140 141 3.388703 CTGCTCTCCCTGCTGCTCC 62.389 68.421 0.00 0.00 0.00 4.70
141 142 2.187424 CTGCTCTCCCTGCTGCTC 59.813 66.667 0.00 0.00 0.00 4.26
142 143 4.098722 GCTGCTCTCCCTGCTGCT 62.099 66.667 0.00 0.00 46.79 4.24
144 145 4.834453 CCGCTGCTCTCCCTGCTG 62.834 72.222 0.00 0.00 0.00 4.41
168 169 4.767255 GTGACCAGCTGGCGGAGG 62.767 72.222 33.06 8.49 39.32 4.30
169 170 4.767255 GGTGACCAGCTGGCGGAG 62.767 72.222 33.06 9.16 39.32 4.63
172 173 4.680237 TTCGGTGACCAGCTGGCG 62.680 66.667 33.06 26.02 39.32 5.69
173 174 2.281484 TTTCGGTGACCAGCTGGC 60.281 61.111 33.06 24.14 39.32 4.85
174 175 2.317609 CGTTTCGGTGACCAGCTGG 61.318 63.158 31.60 31.60 42.17 4.85
175 176 2.954753 GCGTTTCGGTGACCAGCTG 61.955 63.158 6.78 6.78 0.00 4.24
176 177 2.665185 GCGTTTCGGTGACCAGCT 60.665 61.111 1.11 0.00 0.00 4.24
177 178 3.723348 GGCGTTTCGGTGACCAGC 61.723 66.667 1.11 0.00 0.00 4.85
178 179 3.411351 CGGCGTTTCGGTGACCAG 61.411 66.667 1.11 0.00 0.00 4.00
179 180 4.973055 CCGGCGTTTCGGTGACCA 62.973 66.667 6.01 0.00 44.60 4.02
187 188 4.468689 CTCCCTCCCCGGCGTTTC 62.469 72.222 6.01 0.00 0.00 2.78
591 592 2.131067 CCCTCTCCTCGGCTTCTCC 61.131 68.421 0.00 0.00 0.00 3.71
592 593 2.791868 GCCCTCTCCTCGGCTTCTC 61.792 68.421 0.00 0.00 42.21 2.87
593 594 2.762043 GCCCTCTCCTCGGCTTCT 60.762 66.667 0.00 0.00 42.21 2.85
594 595 3.855853 GGCCCTCTCCTCGGCTTC 61.856 72.222 0.00 0.00 45.01 3.86
613 614 4.195334 ATGTCCTGATGCCCGCCC 62.195 66.667 0.00 0.00 0.00 6.13
614 615 2.592861 GATGTCCTGATGCCCGCC 60.593 66.667 0.00 0.00 0.00 6.13
615 616 2.969238 CGATGTCCTGATGCCCGC 60.969 66.667 0.00 0.00 0.00 6.13
616 617 2.280389 CCGATGTCCTGATGCCCG 60.280 66.667 0.00 0.00 0.00 6.13
617 618 2.592861 GCCGATGTCCTGATGCCC 60.593 66.667 0.00 0.00 0.00 5.36
618 619 2.969238 CGCCGATGTCCTGATGCC 60.969 66.667 0.00 0.00 0.00 4.40
619 620 1.953138 CTCGCCGATGTCCTGATGC 60.953 63.158 0.00 0.00 0.00 3.91
620 621 1.300465 CCTCGCCGATGTCCTGATG 60.300 63.158 0.00 0.00 0.00 3.07
621 622 2.502492 CCCTCGCCGATGTCCTGAT 61.502 63.158 0.00 0.00 0.00 2.90
622 623 3.147595 CCCTCGCCGATGTCCTGA 61.148 66.667 0.00 0.00 0.00 3.86
623 624 4.227134 CCCCTCGCCGATGTCCTG 62.227 72.222 0.00 0.00 0.00 3.86
680 681 1.700042 ATGAAGAGGGGATGGGCGAC 61.700 60.000 0.00 0.00 0.00 5.19
681 682 1.384502 ATGAAGAGGGGATGGGCGA 60.385 57.895 0.00 0.00 0.00 5.54
682 683 1.072159 GATGAAGAGGGGATGGGCG 59.928 63.158 0.00 0.00 0.00 6.13
683 684 1.355718 TGGATGAAGAGGGGATGGGC 61.356 60.000 0.00 0.00 0.00 5.36
684 685 0.769873 CTGGATGAAGAGGGGATGGG 59.230 60.000 0.00 0.00 0.00 4.00
685 686 1.142465 CACTGGATGAAGAGGGGATGG 59.858 57.143 0.00 0.00 0.00 3.51
686 687 1.842562 ACACTGGATGAAGAGGGGATG 59.157 52.381 0.00 0.00 0.00 3.51
687 688 2.122768 GACACTGGATGAAGAGGGGAT 58.877 52.381 0.00 0.00 0.00 3.85
688 689 1.203300 TGACACTGGATGAAGAGGGGA 60.203 52.381 0.00 0.00 0.00 4.81
689 690 1.279496 TGACACTGGATGAAGAGGGG 58.721 55.000 0.00 0.00 0.00 4.79
690 691 3.641434 AATGACACTGGATGAAGAGGG 57.359 47.619 0.00 0.00 0.00 4.30
691 692 5.005740 TCAAAATGACACTGGATGAAGAGG 58.994 41.667 0.00 0.00 0.00 3.69
692 693 5.936054 GTCAAAATGACACTGGATGAAGAG 58.064 41.667 5.65 0.00 46.22 2.85
693 694 5.947228 GTCAAAATGACACTGGATGAAGA 57.053 39.130 5.65 0.00 46.22 2.87
705 706 3.067601 AGTTGGGAAACGGTCAAAATGAC 59.932 43.478 1.88 1.88 46.23 3.06
706 707 3.292460 AGTTGGGAAACGGTCAAAATGA 58.708 40.909 0.00 0.00 0.00 2.57
707 708 3.726291 AGTTGGGAAACGGTCAAAATG 57.274 42.857 0.00 0.00 0.00 2.32
708 709 3.181470 CCAAGTTGGGAAACGGTCAAAAT 60.181 43.478 14.64 0.00 32.67 1.82
709 710 2.166664 CCAAGTTGGGAAACGGTCAAAA 59.833 45.455 14.64 0.00 32.67 2.44
710 711 1.751924 CCAAGTTGGGAAACGGTCAAA 59.248 47.619 14.64 0.00 32.67 2.69
711 712 1.341187 ACCAAGTTGGGAAACGGTCAA 60.341 47.619 25.59 0.00 43.37 3.18
712 713 0.256464 ACCAAGTTGGGAAACGGTCA 59.744 50.000 25.59 0.00 43.37 4.02
713 714 0.666374 CACCAAGTTGGGAAACGGTC 59.334 55.000 25.59 0.00 43.37 4.79
714 715 0.256464 TCACCAAGTTGGGAAACGGT 59.744 50.000 25.59 0.00 43.37 4.83
715 716 1.269448 CATCACCAAGTTGGGAAACGG 59.731 52.381 25.59 8.00 43.37 4.44
716 717 1.953686 ACATCACCAAGTTGGGAAACG 59.046 47.619 25.59 12.05 43.37 3.60
717 718 2.955660 TCACATCACCAAGTTGGGAAAC 59.044 45.455 25.59 0.00 43.37 2.78
718 719 3.304911 TCACATCACCAAGTTGGGAAA 57.695 42.857 25.59 10.85 43.37 3.13
719 720 3.304911 TTCACATCACCAAGTTGGGAA 57.695 42.857 25.59 14.60 43.37 3.97
720 721 3.304911 TTTCACATCACCAAGTTGGGA 57.695 42.857 25.59 18.89 43.37 4.37
721 722 3.384467 ACTTTTCACATCACCAAGTTGGG 59.616 43.478 25.59 14.40 43.37 4.12
722 723 4.142182 ACACTTTTCACATCACCAAGTTGG 60.142 41.667 20.76 20.76 45.02 3.77
723 724 4.997565 ACACTTTTCACATCACCAAGTTG 58.002 39.130 0.00 0.00 0.00 3.16
724 725 5.650266 TGTACACTTTTCACATCACCAAGTT 59.350 36.000 0.00 0.00 0.00 2.66
725 726 5.189928 TGTACACTTTTCACATCACCAAGT 58.810 37.500 0.00 0.00 0.00 3.16
726 727 5.749596 TGTACACTTTTCACATCACCAAG 57.250 39.130 0.00 0.00 0.00 3.61
727 728 5.067153 CCTTGTACACTTTTCACATCACCAA 59.933 40.000 0.00 0.00 0.00 3.67
728 729 4.578516 CCTTGTACACTTTTCACATCACCA 59.421 41.667 0.00 0.00 0.00 4.17
729 730 4.556699 GCCTTGTACACTTTTCACATCACC 60.557 45.833 0.00 0.00 0.00 4.02
730 731 4.537015 GCCTTGTACACTTTTCACATCAC 58.463 43.478 0.00 0.00 0.00 3.06
731 732 3.568007 GGCCTTGTACACTTTTCACATCA 59.432 43.478 0.00 0.00 0.00 3.07
732 733 3.821033 AGGCCTTGTACACTTTTCACATC 59.179 43.478 0.00 0.00 0.00 3.06
733 734 3.832527 AGGCCTTGTACACTTTTCACAT 58.167 40.909 0.00 0.00 0.00 3.21
734 735 3.290948 AGGCCTTGTACACTTTTCACA 57.709 42.857 0.00 0.00 0.00 3.58
735 736 3.630312 TCAAGGCCTTGTACACTTTTCAC 59.370 43.478 37.97 0.00 41.16 3.18
736 737 3.630312 GTCAAGGCCTTGTACACTTTTCA 59.370 43.478 37.97 17.27 41.16 2.69
737 738 3.303791 CGTCAAGGCCTTGTACACTTTTC 60.304 47.826 37.97 19.04 41.16 2.29
738 739 2.616842 CGTCAAGGCCTTGTACACTTTT 59.383 45.455 37.97 2.56 41.16 2.27
739 740 2.218603 CGTCAAGGCCTTGTACACTTT 58.781 47.619 37.97 3.39 41.16 2.66
740 741 1.140252 ACGTCAAGGCCTTGTACACTT 59.860 47.619 37.97 23.11 41.16 3.16
741 742 0.756903 ACGTCAAGGCCTTGTACACT 59.243 50.000 37.97 21.13 41.16 3.55
742 743 1.145803 GACGTCAAGGCCTTGTACAC 58.854 55.000 37.97 28.90 41.16 2.90
743 744 0.753867 TGACGTCAAGGCCTTGTACA 59.246 50.000 37.97 28.77 41.16 2.90
744 745 1.873698 TTGACGTCAAGGCCTTGTAC 58.126 50.000 37.97 31.07 41.16 2.90
745 746 2.623878 TTTGACGTCAAGGCCTTGTA 57.376 45.000 37.97 24.79 41.16 2.41
746 747 1.757682 TTTTGACGTCAAGGCCTTGT 58.242 45.000 37.97 23.87 41.16 3.16
747 748 2.861462 TTTTTGACGTCAAGGCCTTG 57.139 45.000 35.52 35.52 41.71 3.61
763 764 7.448469 ACTGAGCAGAATGTTACTACCATTTTT 59.552 33.333 4.21 0.00 39.31 1.94
764 765 6.942576 ACTGAGCAGAATGTTACTACCATTTT 59.057 34.615 4.21 0.00 39.31 1.82
765 766 6.476378 ACTGAGCAGAATGTTACTACCATTT 58.524 36.000 4.21 0.00 39.31 2.32
766 767 6.054860 ACTGAGCAGAATGTTACTACCATT 57.945 37.500 4.21 0.00 39.31 3.16
767 768 5.683876 ACTGAGCAGAATGTTACTACCAT 57.316 39.130 4.21 0.00 39.31 3.55
768 769 5.483685 AACTGAGCAGAATGTTACTACCA 57.516 39.130 4.21 0.00 39.31 3.25
769 770 7.493367 AGATAACTGAGCAGAATGTTACTACC 58.507 38.462 4.21 0.00 39.31 3.18
770 771 8.934507 AAGATAACTGAGCAGAATGTTACTAC 57.065 34.615 4.21 0.00 39.31 2.73
771 772 9.587772 GAAAGATAACTGAGCAGAATGTTACTA 57.412 33.333 4.21 0.00 39.31 1.82
772 773 8.317679 AGAAAGATAACTGAGCAGAATGTTACT 58.682 33.333 4.21 0.00 39.31 2.24
773 774 8.485976 AGAAAGATAACTGAGCAGAATGTTAC 57.514 34.615 4.21 0.00 39.31 2.50
774 775 9.507329 AAAGAAAGATAACTGAGCAGAATGTTA 57.493 29.630 4.21 0.00 39.31 2.41
775 776 7.992754 AAGAAAGATAACTGAGCAGAATGTT 57.007 32.000 4.21 0.28 39.31 2.71
776 777 7.992754 AAAGAAAGATAACTGAGCAGAATGT 57.007 32.000 4.21 0.00 39.31 2.71
827 828 1.422531 ACTTTGGCCCATGCTCAAAA 58.577 45.000 0.00 0.00 37.27 2.44
848 849 0.104120 CTGGGCCACGAATCGATACA 59.896 55.000 10.55 0.07 0.00 2.29
853 854 2.511600 GACCTGGGCCACGAATCG 60.512 66.667 0.00 0.00 0.00 3.34
883 3029 1.274476 CCGTGAACCGTTGTTGTCG 59.726 57.895 0.00 0.00 33.97 4.35
896 3042 3.371063 GTCTCGAGTGGGCCGTGA 61.371 66.667 13.13 0.00 0.00 4.35
909 3055 2.094338 ACGAGATGGGGTTTAACGTCTC 60.094 50.000 0.00 0.00 43.17 3.36
965 3111 2.107953 GGCGGATCCTGAGCTCAC 59.892 66.667 13.74 2.47 0.00 3.51
973 3119 3.461773 CAGGTGACGGCGGATCCT 61.462 66.667 13.24 12.40 0.00 3.24
1207 3364 3.294493 GTTGAGGCGCTGGGCAAA 61.294 61.111 18.70 6.80 46.16 3.68
1266 3428 3.685214 GATCTCGCACGCGTGGAGT 62.685 63.158 35.32 27.92 40.74 3.85
1497 3692 1.215382 CGAGAACATCACGCCCTCA 59.785 57.895 0.00 0.00 0.00 3.86
1557 3752 7.040217 GGAGCATCGGTTCATCTTGATGATG 62.040 48.000 13.26 9.62 44.78 3.07
1559 3754 3.461061 GAGCATCGGTTCATCTTGATGA 58.539 45.455 9.02 9.02 40.45 2.92
1659 4034 0.039074 CGACAGCACGAGGTTTCTCT 60.039 55.000 0.00 0.00 37.86 3.10
1890 4281 5.566438 AGGAGAACCGGTGGATACAATGC 62.566 52.174 8.52 0.00 45.99 3.56
1942 4357 9.219603 CCATAGTATGTAGGTTCAATAACATGG 57.780 37.037 9.28 0.00 37.34 3.66
2193 4614 4.154015 GGTCAACAAAGCAAAAGCAACTTT 59.846 37.500 0.00 0.00 34.94 2.66
2263 4692 4.261572 GGTTCAGTTGAAACATAGCTTGCA 60.262 41.667 5.07 0.00 41.25 4.08
2344 4773 4.142337 ACGTTCAAAATTTTGGGAACTCGT 60.142 37.500 26.45 21.91 38.66 4.18
2365 4794 5.010112 AGGTACTCCATATGAACTCATGACG 59.990 44.000 3.65 0.00 35.58 4.35
2416 4845 3.206150 CTTACCCTCGGATGACCAATTG 58.794 50.000 0.00 0.00 35.59 2.32
2425 4854 8.030913 ACTTATAATTTGACTTACCCTCGGAT 57.969 34.615 0.00 0.00 0.00 4.18
2471 4900 3.712655 CGTATTCGCGGGAATGCA 58.287 55.556 31.68 16.26 43.10 3.96
2489 4918 7.704899 TCATCAATGAAAGATATGCAAGCTTTG 59.295 33.333 14.06 0.00 32.45 2.77
2490 4919 7.778083 TCATCAATGAAAGATATGCAAGCTTT 58.222 30.769 10.50 10.50 34.79 3.51
2491 4920 7.342769 TCATCAATGAAAGATATGCAAGCTT 57.657 32.000 0.00 0.00 33.08 3.74
2492 4921 6.954487 TCATCAATGAAAGATATGCAAGCT 57.046 33.333 0.00 0.00 33.08 3.74
2493 4922 7.201145 ACTTCATCAATGAAAGATATGCAAGC 58.799 34.615 6.85 0.00 45.26 4.01
2494 4923 9.582431 AAACTTCATCAATGAAAGATATGCAAG 57.418 29.630 6.85 0.00 45.26 4.01
2495 4924 9.932207 AAAACTTCATCAATGAAAGATATGCAA 57.068 25.926 6.85 0.00 45.26 4.08
2496 4925 9.361315 CAAAACTTCATCAATGAAAGATATGCA 57.639 29.630 6.85 0.00 45.26 3.96
2497 4926 8.325997 GCAAAACTTCATCAATGAAAGATATGC 58.674 33.333 6.85 9.47 45.26 3.14
2498 4927 9.361315 TGCAAAACTTCATCAATGAAAGATATG 57.639 29.630 6.85 4.59 45.26 1.78
2500 4929 9.932207 AATGCAAAACTTCATCAATGAAAGATA 57.068 25.926 6.85 0.00 45.26 1.98
2501 4930 8.842358 AATGCAAAACTTCATCAATGAAAGAT 57.158 26.923 6.85 0.00 45.26 2.40
2502 4931 7.385752 GGAATGCAAAACTTCATCAATGAAAGA 59.614 33.333 6.85 0.00 45.26 2.52
2503 4932 7.360607 GGGAATGCAAAACTTCATCAATGAAAG 60.361 37.037 6.85 4.42 45.26 2.62
2504 4933 6.427547 GGGAATGCAAAACTTCATCAATGAAA 59.572 34.615 6.85 0.00 45.26 2.69
2505 4934 5.933463 GGGAATGCAAAACTTCATCAATGAA 59.067 36.000 5.38 5.38 43.94 2.57
2506 4935 5.011840 TGGGAATGCAAAACTTCATCAATGA 59.988 36.000 0.00 0.00 34.44 2.57
2507 4936 5.239351 TGGGAATGCAAAACTTCATCAATG 58.761 37.500 0.00 0.00 0.00 2.82
2508 4937 5.486735 TGGGAATGCAAAACTTCATCAAT 57.513 34.783 0.00 0.00 0.00 2.57
2509 4938 4.952071 TGGGAATGCAAAACTTCATCAA 57.048 36.364 0.00 0.00 0.00 2.57
2510 4939 4.081531 GGATGGGAATGCAAAACTTCATCA 60.082 41.667 15.05 7.52 33.52 3.07
2511 4940 4.436332 GGATGGGAATGCAAAACTTCATC 58.564 43.478 0.00 0.03 0.00 2.92
2512 4941 3.198417 GGGATGGGAATGCAAAACTTCAT 59.802 43.478 0.00 0.00 0.00 2.57
2513 4942 2.566724 GGGATGGGAATGCAAAACTTCA 59.433 45.455 0.00 0.00 0.00 3.02
2514 4943 2.833943 AGGGATGGGAATGCAAAACTTC 59.166 45.455 0.00 0.00 0.00 3.01
2515 4944 2.906568 AGGGATGGGAATGCAAAACTT 58.093 42.857 0.00 0.00 0.00 2.66
2516 4945 2.568509 CAAGGGATGGGAATGCAAAACT 59.431 45.455 0.00 0.00 0.00 2.66
2517 4946 2.302733 ACAAGGGATGGGAATGCAAAAC 59.697 45.455 0.00 0.00 0.00 2.43
2518 4947 2.618794 ACAAGGGATGGGAATGCAAAA 58.381 42.857 0.00 0.00 0.00 2.44
2519 4948 2.323999 ACAAGGGATGGGAATGCAAA 57.676 45.000 0.00 0.00 0.00 3.68
2520 4949 3.298619 CATACAAGGGATGGGAATGCAA 58.701 45.455 0.00 0.00 0.00 4.08
2658 5173 6.882610 ACAGATATCAAGTTTTGTCTTGCA 57.117 33.333 5.32 0.00 42.90 4.08
2723 5238 6.206829 AGACTAGTGCCCAACTTGATTTTAAC 59.793 38.462 0.00 0.00 40.56 2.01
2736 5251 4.224147 TGCAATTAGTTAGACTAGTGCCCA 59.776 41.667 0.00 4.07 40.19 5.36
2816 5331 5.067954 TCCGACTGATCCGTATCTGAATAA 58.932 41.667 1.89 0.00 35.60 1.40
2832 5347 3.930229 TGTTCCGAATGTTAATCCGACTG 59.070 43.478 0.00 0.00 0.00 3.51
2874 5390 3.415212 CAAAGGTCCTCTGATGAAGCAA 58.585 45.455 0.00 0.00 0.00 3.91
2881 5397 0.984230 TTCGCCAAAGGTCCTCTGAT 59.016 50.000 0.00 0.00 0.00 2.90
2895 5411 4.779987 ACTCGACAACTAAAAATTTCGCC 58.220 39.130 0.00 0.00 0.00 5.54
2898 5414 8.529102 GGTTTCAACTCGACAACTAAAAATTTC 58.471 33.333 0.00 0.00 0.00 2.17
2906 5422 5.163488 TGAGAAGGTTTCAACTCGACAACTA 60.163 40.000 0.00 0.00 32.81 2.24
2910 5426 3.812156 TGAGAAGGTTTCAACTCGACA 57.188 42.857 0.00 0.00 32.81 4.35
2919 5435 6.331369 TGTGGATTGAATTGAGAAGGTTTC 57.669 37.500 0.00 0.00 0.00 2.78
2921 5437 6.729690 TTTGTGGATTGAATTGAGAAGGTT 57.270 33.333 0.00 0.00 0.00 3.50
2942 5458 2.235016 TGCGCCCATGTTTCTAGTTTT 58.765 42.857 4.18 0.00 0.00 2.43
2974 5491 7.341805 AGATAGCTTCATGTTCAACACCTAAT 58.658 34.615 0.00 0.00 0.00 1.73
3013 5530 8.246180 GGACATATATATGCCATGAACCAAAAG 58.754 37.037 20.46 0.00 37.19 2.27
3067 5584 1.483415 ACCCGGTATGTAACGCAGAAT 59.517 47.619 0.00 0.00 0.00 2.40
3073 5590 2.686235 TGAAACACCCGGTATGTAACG 58.314 47.619 8.89 0.00 0.00 3.18
3111 5628 3.855689 GCTTTAGCAGAAGCCAATCAA 57.144 42.857 11.71 0.00 44.85 2.57
3142 5659 1.912043 GAGGATAGTAGGGCATGCCAT 59.088 52.381 36.56 32.91 37.98 4.40
3144 5661 1.352083 TGAGGATAGTAGGGCATGCC 58.648 55.000 29.47 29.47 0.00 4.40
3145 5662 2.355513 CCATGAGGATAGTAGGGCATGC 60.356 54.545 9.90 9.90 36.89 4.06
3146 5663 3.176411 TCCATGAGGATAGTAGGGCATG 58.824 50.000 0.00 0.00 39.61 4.06
3148 5665 2.894731 CTCCATGAGGATAGTAGGGCA 58.105 52.381 0.00 0.00 44.70 5.36
3174 5691 6.785191 TCCTAAAGTACGTTATTACCTGACG 58.215 40.000 0.00 0.00 42.17 4.35
3187 5704 3.729716 GCGAGCATTACTCCTAAAGTACG 59.270 47.826 0.00 0.00 43.01 3.67
3194 5711 4.652822 TCATCTAGCGAGCATTACTCCTA 58.347 43.478 0.00 0.00 43.01 2.94
3199 5716 3.570559 GGACTCATCTAGCGAGCATTAC 58.429 50.000 8.47 0.00 33.58 1.89
3205 5722 1.336440 CACAGGGACTCATCTAGCGAG 59.664 57.143 7.29 7.29 34.60 5.03
3226 5752 5.063438 TGTGCAGCGAGAATTTAGAACATAC 59.937 40.000 0.00 0.00 0.00 2.39
3516 6050 1.133025 CTTTTTAGCATGCCTGGACCG 59.867 52.381 15.66 0.00 0.00 4.79
3520 6054 4.724074 TTCATCTTTTTAGCATGCCTGG 57.276 40.909 15.66 0.00 0.00 4.45
3573 6107 1.096386 AACCGGCGTTGTTTGCACTA 61.096 50.000 6.01 0.00 0.00 2.74
3582 6116 2.032979 ACGTTAGTAAAAACCGGCGTTG 60.033 45.455 6.01 0.00 30.72 4.10
3613 6147 7.523293 ACAGTCAAATTCACACATATTTCCA 57.477 32.000 0.00 0.00 0.00 3.53
3632 6166 5.068460 AGTGATAAGATGCAGTCCTACAGTC 59.932 44.000 0.00 0.00 0.00 3.51
3633 6167 4.959210 AGTGATAAGATGCAGTCCTACAGT 59.041 41.667 0.00 0.00 0.00 3.55
3634 6168 5.528043 AGTGATAAGATGCAGTCCTACAG 57.472 43.478 0.00 0.00 0.00 2.74
3635 6169 5.664457 CAAGTGATAAGATGCAGTCCTACA 58.336 41.667 0.00 0.00 0.00 2.74
3733 6268 0.038251 CAAGGCGTGTGCTGAGACTA 60.038 55.000 0.00 0.00 42.25 2.59
3802 6337 2.501610 CTCTGCGGAGTTAGGGCC 59.498 66.667 14.84 0.00 35.03 5.80
3816 6351 5.371526 TGTCAGCTTCTCAATTTTGACTCT 58.628 37.500 4.36 0.00 36.71 3.24
3820 6355 4.212004 CGTCTGTCAGCTTCTCAATTTTGA 59.788 41.667 0.00 0.00 35.57 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.