Multiple sequence alignment - TraesCS7A01G509000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G509000 chr7A 100.000 3166 0 0 1 3166 696724462 696721297 0.000000e+00 5847
1 TraesCS7A01G509000 chr7A 90.909 1177 77 15 968 2130 696552640 696553800 0.000000e+00 1554
2 TraesCS7A01G509000 chr7A 84.429 1689 139 69 466 2086 696624026 696622394 0.000000e+00 1548
3 TraesCS7A01G509000 chr7A 84.960 379 37 11 428 794 696552113 696552483 1.790000e-97 366
4 TraesCS7A01G509000 chr7B 87.804 1771 145 31 865 2589 686966574 686964829 0.000000e+00 2008
5 TraesCS7A01G509000 chr7B 87.236 1755 136 51 445 2130 686849467 686851202 0.000000e+00 1919
6 TraesCS7A01G509000 chr7B 89.716 1478 91 26 674 2148 688162806 688164225 0.000000e+00 1831
7 TraesCS7A01G509000 chr7B 86.567 1139 110 21 966 2086 686888460 686887347 0.000000e+00 1216
8 TraesCS7A01G509000 chr7B 91.694 602 45 4 2 600 688162207 688162806 0.000000e+00 830
9 TraesCS7A01G509000 chr7B 81.087 846 124 21 11 828 686967407 686966570 0.000000e+00 643
10 TraesCS7A01G509000 chr7B 85.185 378 26 12 468 830 686889011 686888649 8.350000e-96 361
11 TraesCS7A01G509000 chr7B 87.549 257 32 0 2339 2595 688164499 688164755 6.640000e-77 298
12 TraesCS7A01G509000 chr7D 87.053 1761 131 41 542 2243 604530607 604532329 0.000000e+00 1899
13 TraesCS7A01G509000 chr7D 92.481 1157 75 4 968 2124 603847874 603849018 0.000000e+00 1644
14 TraesCS7A01G509000 chr7D 91.228 1197 86 10 968 2148 604475315 604476508 0.000000e+00 1611
15 TraesCS7A01G509000 chr7D 83.659 1689 149 69 466 2086 603982010 603983639 0.000000e+00 1472
16 TraesCS7A01G509000 chr7D 93.121 596 37 2 1 596 604471813 604472404 0.000000e+00 870
17 TraesCS7A01G509000 chr7D 89.136 359 36 1 2240 2595 604476754 604477112 8.060000e-121 444
18 TraesCS7A01G509000 chr7D 92.905 296 20 1 2495 2790 603852620 603852914 2.260000e-116 429
19 TraesCS7A01G509000 chr7D 90.119 253 25 0 2343 2595 604532361 604532613 2.350000e-86 329
20 TraesCS7A01G509000 chr7D 87.923 207 20 4 583 789 604474929 604475130 4.080000e-59 239
21 TraesCS7A01G509000 chr7D 80.000 380 27 21 620 966 603847474 603847837 5.280000e-58 235
22 TraesCS7A01G509000 chr7D 82.803 157 12 7 816 966 604475124 604475271 3.320000e-25 126


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G509000 chr7A 696721297 696724462 3165 True 5847.000000 5847 100.0000 1 3166 1 chr7A.!!$R2 3165
1 TraesCS7A01G509000 chr7A 696622394 696624026 1632 True 1548.000000 1548 84.4290 466 2086 1 chr7A.!!$R1 1620
2 TraesCS7A01G509000 chr7A 696552113 696553800 1687 False 960.000000 1554 87.9345 428 2130 2 chr7A.!!$F1 1702
3 TraesCS7A01G509000 chr7B 686849467 686851202 1735 False 1919.000000 1919 87.2360 445 2130 1 chr7B.!!$F1 1685
4 TraesCS7A01G509000 chr7B 686964829 686967407 2578 True 1325.500000 2008 84.4455 11 2589 2 chr7B.!!$R2 2578
5 TraesCS7A01G509000 chr7B 688162207 688164755 2548 False 986.333333 1831 89.6530 2 2595 3 chr7B.!!$F2 2593
6 TraesCS7A01G509000 chr7B 686887347 686889011 1664 True 788.500000 1216 85.8760 468 2086 2 chr7B.!!$R1 1618
7 TraesCS7A01G509000 chr7D 603982010 603983639 1629 False 1472.000000 1472 83.6590 466 2086 1 chr7D.!!$F1 1620
8 TraesCS7A01G509000 chr7D 604530607 604532613 2006 False 1114.000000 1899 88.5860 542 2595 2 chr7D.!!$F4 2053
9 TraesCS7A01G509000 chr7D 603847474 603852914 5440 False 769.333333 1644 88.4620 620 2790 3 chr7D.!!$F2 2170
10 TraesCS7A01G509000 chr7D 604471813 604477112 5299 False 658.000000 1611 88.8422 1 2595 5 chr7D.!!$F3 2594

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
959 3620 0.037232 AGCTTCCCGGTTCTTCTTCG 60.037 55.0 0.0 0.0 0.0 3.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2820 9032 0.179 GTGCGATCTGATGGTCCCTT 59.821 55.0 0.0 0.0 0.0 3.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 7.493743 AAGTGCTTCTGATTATGCTTCATAG 57.506 36.000 0.00 0.00 0.00 2.23
163 164 6.506147 TCACAACTTGAGTCATCCAAAAATG 58.494 36.000 0.00 0.00 0.00 2.32
324 346 9.047371 AGCTAACTCTCTTTTCTTTTTGTCTAC 57.953 33.333 0.00 0.00 0.00 2.59
356 378 5.907197 ACAAGGCGTCTTATATTCGAATG 57.093 39.130 20.87 3.87 0.00 2.67
380 402 1.663379 CTGGGCGACATAGGACGACA 61.663 60.000 7.48 2.58 42.12 4.35
433 457 4.378459 CGGCGACTTAGATTTTGAAAAGCT 60.378 41.667 13.27 13.27 0.00 3.74
435 459 5.452777 GCGACTTAGATTTTGAAAAGCTGT 58.547 37.500 17.69 8.45 0.00 4.40
492 517 0.251341 AGAAAATCAAGGCAGGCCGT 60.251 50.000 4.37 0.00 41.95 5.68
629 3194 1.614241 CCCCACCCCACTCGACTAAG 61.614 65.000 0.00 0.00 0.00 2.18
642 3210 2.739913 TCGACTAAGCAAACAATTCCCG 59.260 45.455 0.00 0.00 0.00 5.14
657 3225 2.286523 CCCGCTCACTCCTCCAACT 61.287 63.158 0.00 0.00 0.00 3.16
666 3234 2.836981 CACTCCTCCAACTCAATCTCCT 59.163 50.000 0.00 0.00 0.00 3.69
830 3418 0.627986 CCCCAAGATGCTTCCTCCTT 59.372 55.000 0.00 0.00 0.00 3.36
832 3420 1.409381 CCCAAGATGCTTCCTCCTTCC 60.409 57.143 0.00 0.00 0.00 3.46
833 3421 1.283029 CCAAGATGCTTCCTCCTTCCA 59.717 52.381 0.00 0.00 0.00 3.53
834 3422 2.091994 CCAAGATGCTTCCTCCTTCCAT 60.092 50.000 0.00 0.00 0.00 3.41
835 3423 2.950309 CAAGATGCTTCCTCCTTCCATG 59.050 50.000 0.00 0.00 0.00 3.66
836 3424 2.203584 AGATGCTTCCTCCTTCCATGT 58.796 47.619 0.00 0.00 0.00 3.21
841 3462 0.121197 TTCCTCCTTCCATGTCCCCT 59.879 55.000 0.00 0.00 0.00 4.79
842 3463 0.326618 TCCTCCTTCCATGTCCCCTC 60.327 60.000 0.00 0.00 0.00 4.30
883 3507 6.047960 TCCCCCTCCTCTCTATAAATGATGTA 59.952 42.308 0.00 0.00 0.00 2.29
886 3513 7.401493 CCCCTCCTCTCTATAAATGATGTATGT 59.599 40.741 0.00 0.00 0.00 2.29
911 3538 2.743718 CTCCAAGCCACGACCACT 59.256 61.111 0.00 0.00 0.00 4.00
912 3539 1.071471 CTCCAAGCCACGACCACTT 59.929 57.895 0.00 0.00 0.00 3.16
913 3540 0.951040 CTCCAAGCCACGACCACTTC 60.951 60.000 0.00 0.00 0.00 3.01
914 3541 1.071471 CCAAGCCACGACCACTTCT 59.929 57.895 0.00 0.00 0.00 2.85
915 3542 0.535102 CCAAGCCACGACCACTTCTT 60.535 55.000 0.00 0.00 0.00 2.52
916 3543 0.868406 CAAGCCACGACCACTTCTTC 59.132 55.000 0.00 0.00 0.00 2.87
917 3544 0.250338 AAGCCACGACCACTTCTTCC 60.250 55.000 0.00 0.00 0.00 3.46
918 3545 1.070786 GCCACGACCACTTCTTCCA 59.929 57.895 0.00 0.00 0.00 3.53
959 3620 0.037232 AGCTTCCCGGTTCTTCTTCG 60.037 55.000 0.00 0.00 0.00 3.79
960 3621 0.037605 GCTTCCCGGTTCTTCTTCGA 60.038 55.000 0.00 0.00 0.00 3.71
1091 3801 4.242586 TCCGGTGACCAGGGACCA 62.243 66.667 1.11 0.00 31.97 4.02
1130 3840 4.336889 TGTCTTCCAAGAAGAATCACGT 57.663 40.909 8.55 0.00 36.68 4.49
1181 3891 0.110486 GTGGGCAAGGAGAACAGGAA 59.890 55.000 0.00 0.00 0.00 3.36
1221 3931 1.679898 GCTGGTGGCCAAGTACTCT 59.320 57.895 7.24 0.00 30.80 3.24
1225 3935 0.977395 GGTGGCCAAGTACTCTGACT 59.023 55.000 7.24 0.00 0.00 3.41
1511 4221 3.414700 CGACGAGTGCAAGGCCAC 61.415 66.667 5.01 0.00 35.98 5.01
1590 4306 3.365265 CACCCAGCCAACTTCCGC 61.365 66.667 0.00 0.00 0.00 5.54
1603 4319 0.530870 CTTCCGCCGATCTTCTTCCC 60.531 60.000 0.00 0.00 0.00 3.97
1613 4329 4.219944 CCGATCTTCTTCCCCGTGATTATA 59.780 45.833 0.00 0.00 0.00 0.98
2089 4825 1.743321 CTCTCTGGTCGGATCCCTGC 61.743 65.000 6.06 0.00 0.00 4.85
2096 4832 4.559063 CGGATCCCTGCTGCCTGG 62.559 72.222 6.06 0.00 0.00 4.45
2159 8122 2.185310 TTTCAAGAGAGAGGGCCGGC 62.185 60.000 21.18 21.18 0.00 6.13
2231 8203 2.047274 CCGATGCAACCCTGACGT 60.047 61.111 0.00 0.00 0.00 4.34
2237 8209 2.338620 CAACCCTGACGTGAGCGA 59.661 61.111 0.00 0.00 42.00 4.93
2404 8398 1.115467 ACCAGTGGAGATCATCGACC 58.885 55.000 18.40 0.00 37.35 4.79
2443 8437 2.183679 ACTTCTTCTGAGCCGAGGAAT 58.816 47.619 0.00 0.00 30.12 3.01
2464 8458 4.771356 ACGACGACGATGGTGGCG 62.771 66.667 15.32 4.51 42.66 5.69
2491 8488 4.686091 CGTTTCTATGCATCCATGACGTAT 59.314 41.667 0.19 0.00 32.85 3.06
2503 8715 7.148918 GCATCCATGACGTATTGAATATTTTGC 60.149 37.037 0.00 0.00 0.00 3.68
2538 8750 8.205512 TCTACATGTAAACTGGTGAACTGTTTA 58.794 33.333 8.38 8.38 45.65 2.01
2554 8766 5.985781 ACTGTTTACAAATTAGTGAGCGTG 58.014 37.500 0.00 0.00 0.00 5.34
2555 8767 4.778904 TGTTTACAAATTAGTGAGCGTGC 58.221 39.130 0.00 0.00 0.00 5.34
2608 8820 6.469782 TTAGGCAATTCCATTCCTCAAATC 57.530 37.500 0.00 0.00 37.29 2.17
2612 8824 5.346522 GCAATTCCATTCCTCAAATCTGTC 58.653 41.667 0.00 0.00 0.00 3.51
2619 8831 1.833630 TCCTCAAATCTGTCGAGGCAT 59.166 47.619 0.00 0.00 45.04 4.40
2642 8854 5.658468 TGAACACATGCTCAAAAACATCAA 58.342 33.333 0.00 0.00 0.00 2.57
2649 8861 8.714179 CACATGCTCAAAAACATCAACAATATT 58.286 29.630 0.00 0.00 0.00 1.28
2670 8882 1.434513 TTCACCCCATTGTCCTGCCT 61.435 55.000 0.00 0.00 0.00 4.75
2681 8893 0.392461 GTCCTGCCTTTCCGCATGTA 60.392 55.000 0.00 0.00 38.30 2.29
2685 8897 0.744414 TGCCTTTCCGCATGTAGCTC 60.744 55.000 0.00 0.00 42.61 4.09
2749 8961 9.094578 TGTCCTGAAAATATCAAATAAACCCAA 57.905 29.630 0.00 0.00 37.67 4.12
2813 9025 9.561270 GTCTGATTAAAGATAAAGTTTCAAGGC 57.439 33.333 0.00 0.00 0.00 4.35
2814 9026 8.739972 TCTGATTAAAGATAAAGTTTCAAGGCC 58.260 33.333 0.00 0.00 0.00 5.19
2815 9027 7.535139 TGATTAAAGATAAAGTTTCAAGGCCG 58.465 34.615 0.00 0.00 0.00 6.13
2816 9028 4.783764 AAAGATAAAGTTTCAAGGCCGG 57.216 40.909 0.00 0.00 0.00 6.13
2817 9029 3.713826 AGATAAAGTTTCAAGGCCGGA 57.286 42.857 5.05 0.00 0.00 5.14
2818 9030 3.344515 AGATAAAGTTTCAAGGCCGGAC 58.655 45.455 5.05 0.00 0.00 4.79
2819 9031 1.515081 TAAAGTTTCAAGGCCGGACG 58.485 50.000 5.05 0.00 0.00 4.79
2820 9032 0.179040 AAAGTTTCAAGGCCGGACGA 60.179 50.000 5.05 0.00 0.00 4.20
2821 9033 0.179040 AAGTTTCAAGGCCGGACGAA 60.179 50.000 5.05 0.00 0.00 3.85
2822 9034 0.602905 AGTTTCAAGGCCGGACGAAG 60.603 55.000 5.05 0.00 0.00 3.79
2823 9035 1.302192 TTTCAAGGCCGGACGAAGG 60.302 57.895 5.05 0.00 0.00 3.46
2824 9036 2.741486 TTTCAAGGCCGGACGAAGGG 62.741 60.000 5.05 0.00 0.00 3.95
2825 9037 3.702048 CAAGGCCGGACGAAGGGA 61.702 66.667 5.05 0.00 0.00 4.20
2826 9038 3.703127 AAGGCCGGACGAAGGGAC 61.703 66.667 5.05 0.00 0.00 4.46
2829 9041 3.782443 GCCGGACGAAGGGACCAT 61.782 66.667 5.05 0.00 0.00 3.55
2830 9042 2.499685 CCGGACGAAGGGACCATC 59.500 66.667 0.00 0.00 0.00 3.51
2831 9043 2.355986 CCGGACGAAGGGACCATCA 61.356 63.158 0.00 0.00 0.00 3.07
2832 9044 1.141881 CGGACGAAGGGACCATCAG 59.858 63.158 0.00 0.00 0.00 2.90
2833 9045 1.320344 CGGACGAAGGGACCATCAGA 61.320 60.000 0.00 0.00 0.00 3.27
2834 9046 1.123928 GGACGAAGGGACCATCAGAT 58.876 55.000 0.00 0.00 0.00 2.90
2835 9047 1.069358 GGACGAAGGGACCATCAGATC 59.931 57.143 0.00 0.00 0.00 2.75
2836 9048 0.747255 ACGAAGGGACCATCAGATCG 59.253 55.000 0.00 0.00 35.16 3.69
2837 9049 0.598680 CGAAGGGACCATCAGATCGC 60.599 60.000 0.00 0.00 0.00 4.58
2838 9050 0.465705 GAAGGGACCATCAGATCGCA 59.534 55.000 0.00 0.00 0.00 5.10
2839 9051 0.179000 AAGGGACCATCAGATCGCAC 59.821 55.000 0.00 0.00 0.00 5.34
2840 9052 0.689080 AGGGACCATCAGATCGCACT 60.689 55.000 0.00 0.00 0.00 4.40
2841 9053 0.179000 GGGACCATCAGATCGCACTT 59.821 55.000 0.00 0.00 0.00 3.16
2842 9054 1.412710 GGGACCATCAGATCGCACTTA 59.587 52.381 0.00 0.00 0.00 2.24
2843 9055 2.158957 GGGACCATCAGATCGCACTTAA 60.159 50.000 0.00 0.00 0.00 1.85
2844 9056 3.531538 GGACCATCAGATCGCACTTAAA 58.468 45.455 0.00 0.00 0.00 1.52
2845 9057 3.309954 GGACCATCAGATCGCACTTAAAC 59.690 47.826 0.00 0.00 0.00 2.01
2846 9058 4.184629 GACCATCAGATCGCACTTAAACT 58.815 43.478 0.00 0.00 0.00 2.66
2847 9059 4.579869 ACCATCAGATCGCACTTAAACTT 58.420 39.130 0.00 0.00 0.00 2.66
2848 9060 4.393062 ACCATCAGATCGCACTTAAACTTG 59.607 41.667 0.00 0.00 0.00 3.16
2849 9061 4.631377 CCATCAGATCGCACTTAAACTTGA 59.369 41.667 0.00 0.00 0.00 3.02
2850 9062 5.446473 CCATCAGATCGCACTTAAACTTGAC 60.446 44.000 0.00 0.00 0.00 3.18
2851 9063 3.994392 TCAGATCGCACTTAAACTTGACC 59.006 43.478 0.00 0.00 0.00 4.02
2852 9064 3.997021 CAGATCGCACTTAAACTTGACCT 59.003 43.478 0.00 0.00 0.00 3.85
2853 9065 3.997021 AGATCGCACTTAAACTTGACCTG 59.003 43.478 0.00 0.00 0.00 4.00
2854 9066 3.188159 TCGCACTTAAACTTGACCTGT 57.812 42.857 0.00 0.00 0.00 4.00
2855 9067 3.128349 TCGCACTTAAACTTGACCTGTC 58.872 45.455 0.00 0.00 0.00 3.51
2856 9068 2.223377 CGCACTTAAACTTGACCTGTCC 59.777 50.000 0.00 0.00 0.00 4.02
2857 9069 2.552743 GCACTTAAACTTGACCTGTCCC 59.447 50.000 0.00 0.00 0.00 4.46
2858 9070 3.146847 CACTTAAACTTGACCTGTCCCC 58.853 50.000 0.00 0.00 0.00 4.81
2859 9071 2.781174 ACTTAAACTTGACCTGTCCCCA 59.219 45.455 0.00 0.00 0.00 4.96
2860 9072 3.397955 ACTTAAACTTGACCTGTCCCCAT 59.602 43.478 0.00 0.00 0.00 4.00
2861 9073 4.600111 ACTTAAACTTGACCTGTCCCCATA 59.400 41.667 0.00 0.00 0.00 2.74
2862 9074 3.434940 AAACTTGACCTGTCCCCATAC 57.565 47.619 0.00 0.00 0.00 2.39
2863 9075 0.902531 ACTTGACCTGTCCCCATACG 59.097 55.000 0.00 0.00 0.00 3.06
2864 9076 0.178068 CTTGACCTGTCCCCATACGG 59.822 60.000 0.00 0.00 0.00 4.02
2865 9077 0.545787 TTGACCTGTCCCCATACGGT 60.546 55.000 0.00 0.00 0.00 4.83
2866 9078 0.335705 TGACCTGTCCCCATACGGTA 59.664 55.000 0.00 0.00 0.00 4.02
2867 9079 1.273154 TGACCTGTCCCCATACGGTAA 60.273 52.381 0.00 0.00 0.00 2.85
2868 9080 1.137675 GACCTGTCCCCATACGGTAAC 59.862 57.143 0.00 0.00 0.00 2.50
2869 9081 0.466963 CCTGTCCCCATACGGTAACC 59.533 60.000 0.00 0.00 0.00 2.85
2870 9082 1.196911 CTGTCCCCATACGGTAACCA 58.803 55.000 0.00 0.00 0.00 3.67
2871 9083 1.555992 CTGTCCCCATACGGTAACCAA 59.444 52.381 0.00 0.00 0.00 3.67
2872 9084 1.555992 TGTCCCCATACGGTAACCAAG 59.444 52.381 0.00 0.00 0.00 3.61
2873 9085 1.556451 GTCCCCATACGGTAACCAAGT 59.444 52.381 0.00 0.00 0.00 3.16
2874 9086 1.555992 TCCCCATACGGTAACCAAGTG 59.444 52.381 0.00 0.00 0.00 3.16
2875 9087 1.279846 CCCCATACGGTAACCAAGTGT 59.720 52.381 0.00 0.00 0.00 3.55
2876 9088 2.290450 CCCCATACGGTAACCAAGTGTT 60.290 50.000 0.00 0.00 41.11 3.32
2877 9089 3.004862 CCCATACGGTAACCAAGTGTTC 58.995 50.000 0.00 0.00 38.42 3.18
2878 9090 3.004862 CCATACGGTAACCAAGTGTTCC 58.995 50.000 0.00 0.00 38.42 3.62
2879 9091 3.307199 CCATACGGTAACCAAGTGTTCCT 60.307 47.826 0.00 0.00 38.42 3.36
2880 9092 2.538512 ACGGTAACCAAGTGTTCCTC 57.461 50.000 0.00 0.00 38.42 3.71
2881 9093 1.071228 ACGGTAACCAAGTGTTCCTCC 59.929 52.381 0.00 0.00 38.42 4.30
2882 9094 1.804601 GGTAACCAAGTGTTCCTCCG 58.195 55.000 0.00 0.00 38.42 4.63
2883 9095 1.345415 GGTAACCAAGTGTTCCTCCGA 59.655 52.381 0.00 0.00 38.42 4.55
2884 9096 2.224354 GGTAACCAAGTGTTCCTCCGAA 60.224 50.000 0.00 0.00 38.42 4.30
2885 9097 2.721425 AACCAAGTGTTCCTCCGAAA 57.279 45.000 0.00 0.00 28.45 3.46
2886 9098 2.951229 ACCAAGTGTTCCTCCGAAAT 57.049 45.000 0.00 0.00 0.00 2.17
2887 9099 2.504367 ACCAAGTGTTCCTCCGAAATG 58.496 47.619 0.00 0.00 0.00 2.32
2888 9100 1.200020 CCAAGTGTTCCTCCGAAATGC 59.800 52.381 0.00 0.00 0.00 3.56
2889 9101 2.154462 CAAGTGTTCCTCCGAAATGCT 58.846 47.619 0.00 0.00 0.00 3.79
2890 9102 2.100605 AGTGTTCCTCCGAAATGCTC 57.899 50.000 0.00 0.00 0.00 4.26
2891 9103 1.087501 GTGTTCCTCCGAAATGCTCC 58.912 55.000 0.00 0.00 0.00 4.70
2892 9104 0.391130 TGTTCCTCCGAAATGCTCCG 60.391 55.000 0.00 0.00 0.00 4.63
2893 9105 0.391263 GTTCCTCCGAAATGCTCCGT 60.391 55.000 0.00 0.00 0.00 4.69
2894 9106 0.323629 TTCCTCCGAAATGCTCCGTT 59.676 50.000 0.00 0.00 0.00 4.44
2895 9107 0.323629 TCCTCCGAAATGCTCCGTTT 59.676 50.000 0.00 0.00 0.00 3.60
2896 9108 1.165270 CCTCCGAAATGCTCCGTTTT 58.835 50.000 0.00 0.00 0.00 2.43
2897 9109 1.135689 CCTCCGAAATGCTCCGTTTTG 60.136 52.381 0.00 0.00 0.00 2.44
2898 9110 1.535462 CTCCGAAATGCTCCGTTTTGT 59.465 47.619 0.00 0.00 0.00 2.83
2899 9111 2.739913 CTCCGAAATGCTCCGTTTTGTA 59.260 45.455 0.00 0.00 0.00 2.41
2900 9112 3.139850 TCCGAAATGCTCCGTTTTGTAA 58.860 40.909 0.00 0.00 0.00 2.41
2901 9113 3.187637 TCCGAAATGCTCCGTTTTGTAAG 59.812 43.478 0.00 0.00 0.00 2.34
2902 9114 2.908626 CGAAATGCTCCGTTTTGTAAGC 59.091 45.455 0.00 0.00 35.31 3.09
2904 9116 2.989422 ATGCTCCGTTTTGTAAGCAC 57.011 45.000 0.00 0.00 46.57 4.40
2905 9117 0.584396 TGCTCCGTTTTGTAAGCACG 59.416 50.000 0.00 0.00 39.69 5.34
2906 9118 0.724785 GCTCCGTTTTGTAAGCACGC 60.725 55.000 0.00 0.00 34.86 5.34
2907 9119 0.450482 CTCCGTTTTGTAAGCACGCG 60.450 55.000 3.53 3.53 32.43 6.01
2908 9120 1.439693 CCGTTTTGTAAGCACGCGG 60.440 57.895 12.47 0.00 32.43 6.46
2909 9121 2.072654 CGTTTTGTAAGCACGCGGC 61.073 57.895 12.47 11.61 45.30 6.53
2919 9131 4.041917 CACGCGGCATGCCAAACT 62.042 61.111 34.93 12.23 42.08 2.66
2920 9132 3.294493 ACGCGGCATGCCAAACTT 61.294 55.556 34.93 15.31 42.08 2.66
2921 9133 2.049248 CGCGGCATGCCAAACTTT 60.049 55.556 34.93 0.00 42.08 2.66
2922 9134 2.088178 CGCGGCATGCCAAACTTTC 61.088 57.895 34.93 13.51 42.08 2.62
2923 9135 1.290009 GCGGCATGCCAAACTTTCT 59.710 52.632 34.93 0.00 37.76 2.52
2924 9136 0.733909 GCGGCATGCCAAACTTTCTC 60.734 55.000 34.93 8.99 37.76 2.87
2925 9137 0.597568 CGGCATGCCAAACTTTCTCA 59.402 50.000 34.93 0.00 35.37 3.27
2926 9138 1.000385 CGGCATGCCAAACTTTCTCAA 60.000 47.619 34.93 0.00 35.37 3.02
2927 9139 2.545532 CGGCATGCCAAACTTTCTCAAA 60.546 45.455 34.93 0.00 35.37 2.69
2928 9140 2.802247 GGCATGCCAAACTTTCTCAAAC 59.198 45.455 32.08 0.00 35.81 2.93
2929 9141 3.493176 GGCATGCCAAACTTTCTCAAACT 60.493 43.478 32.08 0.00 35.81 2.66
2930 9142 3.492011 GCATGCCAAACTTTCTCAAACTG 59.508 43.478 6.36 0.00 0.00 3.16
2931 9143 4.737352 GCATGCCAAACTTTCTCAAACTGA 60.737 41.667 6.36 0.00 0.00 3.41
2932 9144 5.535333 CATGCCAAACTTTCTCAAACTGAT 58.465 37.500 0.00 0.00 0.00 2.90
2933 9145 5.596836 TGCCAAACTTTCTCAAACTGATT 57.403 34.783 0.00 0.00 0.00 2.57
2934 9146 5.350633 TGCCAAACTTTCTCAAACTGATTG 58.649 37.500 0.00 0.00 40.58 2.67
2935 9147 4.209911 GCCAAACTTTCTCAAACTGATTGC 59.790 41.667 0.00 0.00 38.98 3.56
2936 9148 5.350633 CCAAACTTTCTCAAACTGATTGCA 58.649 37.500 0.00 0.00 38.98 4.08
2937 9149 5.811613 CCAAACTTTCTCAAACTGATTGCAA 59.188 36.000 0.00 0.00 38.98 4.08
2938 9150 6.019318 CCAAACTTTCTCAAACTGATTGCAAG 60.019 38.462 4.94 0.00 38.98 4.01
2939 9151 5.841957 ACTTTCTCAAACTGATTGCAAGT 57.158 34.783 4.94 0.00 38.98 3.16
2940 9152 6.212888 ACTTTCTCAAACTGATTGCAAGTT 57.787 33.333 4.94 0.09 38.98 2.66
2941 9153 6.633856 ACTTTCTCAAACTGATTGCAAGTTT 58.366 32.000 4.94 7.25 38.98 2.66
2942 9154 7.099120 ACTTTCTCAAACTGATTGCAAGTTTT 58.901 30.769 11.43 2.66 38.98 2.43
2943 9155 8.250332 ACTTTCTCAAACTGATTGCAAGTTTTA 58.750 29.630 11.43 4.67 38.98 1.52
2944 9156 7.985634 TTCTCAAACTGATTGCAAGTTTTAC 57.014 32.000 11.43 0.00 38.98 2.01
2945 9157 7.333528 TCTCAAACTGATTGCAAGTTTTACT 57.666 32.000 11.43 0.00 38.98 2.24
2946 9158 8.445275 TCTCAAACTGATTGCAAGTTTTACTA 57.555 30.769 11.43 0.00 38.98 1.82
2947 9159 8.342634 TCTCAAACTGATTGCAAGTTTTACTAC 58.657 33.333 11.43 0.00 38.98 2.73
2948 9160 7.129622 TCAAACTGATTGCAAGTTTTACTACG 58.870 34.615 11.43 1.85 38.98 3.51
2949 9161 5.607119 ACTGATTGCAAGTTTTACTACGG 57.393 39.130 4.94 0.00 0.00 4.02
2950 9162 4.083484 ACTGATTGCAAGTTTTACTACGGC 60.083 41.667 4.94 0.00 0.00 5.68
2951 9163 3.189702 TGATTGCAAGTTTTACTACGGCC 59.810 43.478 4.94 0.00 0.00 6.13
2952 9164 2.554370 TGCAAGTTTTACTACGGCCT 57.446 45.000 0.00 0.00 0.00 5.19
2953 9165 3.681593 TGCAAGTTTTACTACGGCCTA 57.318 42.857 0.00 0.00 0.00 3.93
2954 9166 3.328505 TGCAAGTTTTACTACGGCCTAC 58.671 45.455 0.00 0.00 0.00 3.18
2955 9167 3.007182 TGCAAGTTTTACTACGGCCTACT 59.993 43.478 0.00 0.00 0.00 2.57
2956 9168 3.999001 GCAAGTTTTACTACGGCCTACTT 59.001 43.478 0.00 0.00 0.00 2.24
2957 9169 5.170748 GCAAGTTTTACTACGGCCTACTTA 58.829 41.667 0.00 0.00 0.00 2.24
2958 9170 5.290400 GCAAGTTTTACTACGGCCTACTTAG 59.710 44.000 0.00 0.00 0.00 2.18
2959 9171 5.588958 AGTTTTACTACGGCCTACTTAGG 57.411 43.478 0.00 0.00 46.42 2.69
2960 9172 5.264395 AGTTTTACTACGGCCTACTTAGGA 58.736 41.667 6.48 0.00 46.63 2.94
2961 9173 5.716703 AGTTTTACTACGGCCTACTTAGGAA 59.283 40.000 6.48 0.00 46.63 3.36
2962 9174 6.211384 AGTTTTACTACGGCCTACTTAGGAAA 59.789 38.462 6.48 2.63 46.63 3.13
2963 9175 6.796785 TTTACTACGGCCTACTTAGGAAAT 57.203 37.500 6.48 0.00 46.63 2.17
2964 9176 7.896383 TTTACTACGGCCTACTTAGGAAATA 57.104 36.000 6.48 0.00 46.63 1.40
2965 9177 8.482852 TTTACTACGGCCTACTTAGGAAATAT 57.517 34.615 6.48 0.00 46.63 1.28
2966 9178 6.587206 ACTACGGCCTACTTAGGAAATATC 57.413 41.667 6.48 0.00 46.63 1.63
2967 9179 6.073314 ACTACGGCCTACTTAGGAAATATCA 58.927 40.000 6.48 0.00 46.63 2.15
2968 9180 6.724905 ACTACGGCCTACTTAGGAAATATCAT 59.275 38.462 6.48 0.00 46.63 2.45
2969 9181 5.794894 ACGGCCTACTTAGGAAATATCATG 58.205 41.667 6.48 0.00 46.63 3.07
2970 9182 5.542635 ACGGCCTACTTAGGAAATATCATGA 59.457 40.000 6.48 0.00 46.63 3.07
2971 9183 6.213600 ACGGCCTACTTAGGAAATATCATGAT 59.786 38.462 13.81 13.81 46.63 2.45
2972 9184 7.399191 ACGGCCTACTTAGGAAATATCATGATA 59.601 37.037 17.56 17.56 46.63 2.15
2973 9185 7.707035 CGGCCTACTTAGGAAATATCATGATAC 59.293 40.741 17.60 5.50 46.63 2.24
2974 9186 7.988028 GGCCTACTTAGGAAATATCATGATACC 59.012 40.741 17.60 14.01 46.63 2.73
2975 9187 8.540388 GCCTACTTAGGAAATATCATGATACCA 58.460 37.037 17.60 0.00 46.63 3.25
2988 9200 5.484173 CATGATACCATGCACGTTTAGTT 57.516 39.130 0.00 0.00 43.06 2.24
2989 9201 5.879237 CATGATACCATGCACGTTTAGTTT 58.121 37.500 0.00 0.00 43.06 2.66
2990 9202 5.950758 TGATACCATGCACGTTTAGTTTT 57.049 34.783 0.00 0.00 0.00 2.43
2991 9203 6.320494 TGATACCATGCACGTTTAGTTTTT 57.680 33.333 0.00 0.00 0.00 1.94
3036 9248 9.683069 TCTTTTGAGATTTCAAGACAAATTAGC 57.317 29.630 0.00 0.00 43.76 3.09
3037 9249 9.688592 CTTTTGAGATTTCAAGACAAATTAGCT 57.311 29.630 0.00 0.00 43.76 3.32
3039 9251 9.683069 TTTGAGATTTCAAGACAAATTAGCTTC 57.317 29.630 0.00 0.00 43.76 3.86
3040 9252 7.521529 TGAGATTTCAAGACAAATTAGCTTCG 58.478 34.615 0.00 0.00 0.00 3.79
3041 9253 7.173218 TGAGATTTCAAGACAAATTAGCTTCGT 59.827 33.333 0.00 0.00 0.00 3.85
3042 9254 7.875971 AGATTTCAAGACAAATTAGCTTCGTT 58.124 30.769 0.00 0.00 0.00 3.85
3043 9255 8.352942 AGATTTCAAGACAAATTAGCTTCGTTT 58.647 29.630 0.00 0.00 0.00 3.60
3044 9256 8.871686 ATTTCAAGACAAATTAGCTTCGTTTT 57.128 26.923 0.00 0.00 0.00 2.43
3045 9257 7.908193 TTCAAGACAAATTAGCTTCGTTTTC 57.092 32.000 0.00 0.00 0.00 2.29
3046 9258 6.133392 TCAAGACAAATTAGCTTCGTTTTCG 58.867 36.000 0.00 0.00 45.64 3.46
3047 9259 4.464112 AGACAAATTAGCTTCGTTTTCGC 58.536 39.130 0.00 0.00 43.73 4.70
3048 9260 3.561503 ACAAATTAGCTTCGTTTTCGCC 58.438 40.909 0.00 0.00 43.73 5.54
3049 9261 2.520686 AATTAGCTTCGTTTTCGCCG 57.479 45.000 0.00 0.00 43.73 6.46
3050 9262 1.435577 ATTAGCTTCGTTTTCGCCGT 58.564 45.000 0.00 0.00 43.73 5.68
3051 9263 1.219646 TTAGCTTCGTTTTCGCCGTT 58.780 45.000 0.00 0.00 43.73 4.44
3052 9264 2.063156 TAGCTTCGTTTTCGCCGTTA 57.937 45.000 0.00 0.00 43.73 3.18
3053 9265 1.219646 AGCTTCGTTTTCGCCGTTAA 58.780 45.000 0.00 0.00 43.73 2.01
3054 9266 1.070376 AGCTTCGTTTTCGCCGTTAAC 60.070 47.619 0.00 0.00 43.73 2.01
3055 9267 1.333081 GCTTCGTTTTCGCCGTTAACA 60.333 47.619 6.39 0.00 43.73 2.41
3056 9268 2.850254 GCTTCGTTTTCGCCGTTAACAA 60.850 45.455 6.39 0.00 43.73 2.83
3057 9269 2.365820 TCGTTTTCGCCGTTAACAAC 57.634 45.000 6.39 0.57 43.73 3.32
3058 9270 1.662629 TCGTTTTCGCCGTTAACAACA 59.337 42.857 6.39 0.00 43.73 3.33
3059 9271 1.769067 CGTTTTCGCCGTTAACAACAC 59.231 47.619 6.39 0.00 36.22 3.32
3060 9272 2.110990 GTTTTCGCCGTTAACAACACC 58.889 47.619 6.39 0.00 0.00 4.16
3061 9273 1.666054 TTTCGCCGTTAACAACACCT 58.334 45.000 6.39 0.00 0.00 4.00
3062 9274 2.522836 TTCGCCGTTAACAACACCTA 57.477 45.000 6.39 0.00 0.00 3.08
3063 9275 1.782044 TCGCCGTTAACAACACCTAC 58.218 50.000 6.39 0.00 0.00 3.18
3064 9276 0.792031 CGCCGTTAACAACACCTACC 59.208 55.000 6.39 0.00 0.00 3.18
3065 9277 1.873069 CGCCGTTAACAACACCTACCA 60.873 52.381 6.39 0.00 0.00 3.25
3066 9278 2.220313 GCCGTTAACAACACCTACCAA 58.780 47.619 6.39 0.00 0.00 3.67
3067 9279 2.617774 GCCGTTAACAACACCTACCAAA 59.382 45.455 6.39 0.00 0.00 3.28
3068 9280 3.253921 GCCGTTAACAACACCTACCAAAT 59.746 43.478 6.39 0.00 0.00 2.32
3069 9281 4.789784 CCGTTAACAACACCTACCAAATG 58.210 43.478 6.39 0.00 0.00 2.32
3070 9282 4.276431 CCGTTAACAACACCTACCAAATGT 59.724 41.667 6.39 0.00 0.00 2.71
3071 9283 5.209240 CGTTAACAACACCTACCAAATGTG 58.791 41.667 6.39 0.00 36.11 3.21
3072 9284 3.726291 AACAACACCTACCAAATGTGC 57.274 42.857 0.00 0.00 33.30 4.57
3073 9285 1.606668 ACAACACCTACCAAATGTGCG 59.393 47.619 0.00 0.00 33.30 5.34
3074 9286 1.606668 CAACACCTACCAAATGTGCGT 59.393 47.619 0.00 0.00 33.30 5.24
3075 9287 2.809119 CAACACCTACCAAATGTGCGTA 59.191 45.455 0.00 0.00 33.30 4.42
3076 9288 3.128852 ACACCTACCAAATGTGCGTAA 57.871 42.857 0.00 0.00 33.30 3.18
3077 9289 3.681593 ACACCTACCAAATGTGCGTAAT 58.318 40.909 0.00 0.00 33.30 1.89
3078 9290 4.076394 ACACCTACCAAATGTGCGTAATT 58.924 39.130 0.00 0.00 33.30 1.40
3079 9291 4.521256 ACACCTACCAAATGTGCGTAATTT 59.479 37.500 0.00 0.00 33.30 1.82
3080 9292 4.856487 CACCTACCAAATGTGCGTAATTTG 59.144 41.667 10.15 10.15 42.24 2.32
3085 9297 4.901866 CAAATGTGCGTAATTTGGTTCC 57.098 40.909 9.52 0.00 40.02 3.62
3086 9298 4.555262 CAAATGTGCGTAATTTGGTTCCT 58.445 39.130 9.52 0.00 40.02 3.36
3087 9299 4.864704 AATGTGCGTAATTTGGTTCCTT 57.135 36.364 0.00 0.00 0.00 3.36
3088 9300 5.968528 AATGTGCGTAATTTGGTTCCTTA 57.031 34.783 0.00 0.00 0.00 2.69
3089 9301 6.524101 AATGTGCGTAATTTGGTTCCTTAT 57.476 33.333 0.00 0.00 0.00 1.73
3090 9302 7.633193 AATGTGCGTAATTTGGTTCCTTATA 57.367 32.000 0.00 0.00 0.00 0.98
3091 9303 7.633193 ATGTGCGTAATTTGGTTCCTTATAA 57.367 32.000 0.00 0.00 0.00 0.98
3092 9304 7.633193 TGTGCGTAATTTGGTTCCTTATAAT 57.367 32.000 0.00 0.00 0.00 1.28
3093 9305 7.699566 TGTGCGTAATTTGGTTCCTTATAATC 58.300 34.615 0.00 0.00 0.00 1.75
3094 9306 7.337184 TGTGCGTAATTTGGTTCCTTATAATCA 59.663 33.333 0.00 0.00 0.00 2.57
3095 9307 8.349983 GTGCGTAATTTGGTTCCTTATAATCAT 58.650 33.333 0.00 0.00 0.00 2.45
3096 9308 8.349245 TGCGTAATTTGGTTCCTTATAATCATG 58.651 33.333 0.00 0.00 0.00 3.07
3097 9309 7.807907 GCGTAATTTGGTTCCTTATAATCATGG 59.192 37.037 0.00 0.00 0.00 3.66
3098 9310 9.062524 CGTAATTTGGTTCCTTATAATCATGGA 57.937 33.333 0.00 0.00 0.00 3.41
3101 9313 8.697507 ATTTGGTTCCTTATAATCATGGAGAC 57.302 34.615 0.00 0.00 0.00 3.36
3127 9339 4.379374 GCATGTGCTCAAAAACATCAAC 57.621 40.909 0.00 0.00 34.81 3.18
3128 9340 3.803231 GCATGTGCTCAAAAACATCAACA 59.197 39.130 0.00 0.00 34.81 3.33
3129 9341 4.270566 GCATGTGCTCAAAAACATCAACAA 59.729 37.500 0.00 0.00 34.81 2.83
3130 9342 5.557514 GCATGTGCTCAAAAACATCAACAAG 60.558 40.000 0.00 0.00 34.81 3.16
3131 9343 5.321959 TGTGCTCAAAAACATCAACAAGA 57.678 34.783 0.00 0.00 0.00 3.02
3132 9344 5.904941 TGTGCTCAAAAACATCAACAAGAT 58.095 33.333 0.00 0.00 37.48 2.40
3133 9345 6.339730 TGTGCTCAAAAACATCAACAAGATT 58.660 32.000 0.00 0.00 33.72 2.40
3134 9346 6.256104 TGTGCTCAAAAACATCAACAAGATTG 59.744 34.615 0.00 0.00 33.72 2.67
3135 9347 6.256321 GTGCTCAAAAACATCAACAAGATTGT 59.744 34.615 0.00 0.00 44.72 2.71
3147 9359 4.436113 ACAAGATTGTTTGCCCCATTTT 57.564 36.364 0.00 0.00 38.47 1.82
3148 9360 4.388485 ACAAGATTGTTTGCCCCATTTTC 58.612 39.130 0.00 0.00 38.47 2.29
3149 9361 3.701205 AGATTGTTTGCCCCATTTTCC 57.299 42.857 0.00 0.00 0.00 3.13
3150 9362 3.250617 AGATTGTTTGCCCCATTTTCCT 58.749 40.909 0.00 0.00 0.00 3.36
3151 9363 2.926778 TTGTTTGCCCCATTTTCCTG 57.073 45.000 0.00 0.00 0.00 3.86
3152 9364 0.396060 TGTTTGCCCCATTTTCCTGC 59.604 50.000 0.00 0.00 0.00 4.85
3153 9365 0.396060 GTTTGCCCCATTTTCCTGCA 59.604 50.000 0.00 0.00 0.00 4.41
3154 9366 1.003464 GTTTGCCCCATTTTCCTGCAT 59.997 47.619 0.00 0.00 0.00 3.96
3155 9367 1.360185 TTGCCCCATTTTCCTGCATT 58.640 45.000 0.00 0.00 0.00 3.56
3156 9368 0.903942 TGCCCCATTTTCCTGCATTC 59.096 50.000 0.00 0.00 0.00 2.67
3157 9369 1.197812 GCCCCATTTTCCTGCATTCT 58.802 50.000 0.00 0.00 0.00 2.40
3158 9370 1.134610 GCCCCATTTTCCTGCATTCTG 60.135 52.381 0.00 0.00 0.00 3.02
3159 9371 1.134610 CCCCATTTTCCTGCATTCTGC 60.135 52.381 0.00 0.00 45.29 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 3.528597 ATAAACGAGGCCAGTCTTCTC 57.471 47.619 5.01 0.00 0.00 2.87
131 132 4.269183 TGACTCAAGTTGTGAATGTGGTT 58.731 39.130 11.73 0.00 35.22 3.67
208 209 6.706716 TGTGGATGTCGAACTATTTACAACAA 59.293 34.615 0.00 0.00 0.00 2.83
209 210 6.224584 TGTGGATGTCGAACTATTTACAACA 58.775 36.000 0.00 0.00 0.00 3.33
324 346 0.719465 GACGCCTTGTACAATGGACG 59.281 55.000 21.28 22.14 0.00 4.79
356 378 0.535335 TCCTATGTCGCCCAGTTGAC 59.465 55.000 0.00 0.00 35.67 3.18
492 517 6.931840 GGCACCCAAACAAAGAAAAATACATA 59.068 34.615 0.00 0.00 0.00 2.29
523 548 2.603075 AGGGGTGCTTTCATGCTTAA 57.397 45.000 0.00 0.00 0.00 1.85
629 3194 0.598065 AGTGAGCGGGAATTGTTTGC 59.402 50.000 0.00 0.00 0.00 3.68
642 3210 2.235898 AGATTGAGTTGGAGGAGTGAGC 59.764 50.000 0.00 0.00 0.00 4.26
657 3225 5.086621 TCGATGGATGGATTAGGAGATTGA 58.913 41.667 0.00 0.00 0.00 2.57
666 3234 5.823861 TGAAGGAATCGATGGATGGATTA 57.176 39.130 0.00 0.00 35.73 1.75
830 3418 2.372688 GAGGGGAGGGGACATGGA 59.627 66.667 0.00 0.00 0.00 3.41
832 3420 2.774351 GGGAGGGGAGGGGACATG 60.774 72.222 0.00 0.00 0.00 3.21
833 3421 2.672222 ATGGGAGGGGAGGGGACAT 61.672 63.158 0.00 0.00 0.00 3.06
834 3422 3.300962 ATGGGAGGGGAGGGGACA 61.301 66.667 0.00 0.00 0.00 4.02
835 3423 2.774351 CATGGGAGGGGAGGGGAC 60.774 72.222 0.00 0.00 0.00 4.46
836 3424 3.300962 ACATGGGAGGGGAGGGGA 61.301 66.667 0.00 0.00 0.00 4.81
841 3462 3.300962 AGGGGACATGGGAGGGGA 61.301 66.667 0.00 0.00 0.00 4.81
842 3463 2.774351 GAGGGGACATGGGAGGGG 60.774 72.222 0.00 0.00 0.00 4.79
883 3507 2.270205 CTTGGAGGAGGCGCACAT 59.730 61.111 10.83 0.00 0.00 3.21
911 3538 4.444022 GGCATGAGCTAGAGAATGGAAGAA 60.444 45.833 0.00 0.00 41.70 2.52
912 3539 3.070734 GGCATGAGCTAGAGAATGGAAGA 59.929 47.826 0.00 0.00 41.70 2.87
913 3540 3.401182 GGCATGAGCTAGAGAATGGAAG 58.599 50.000 0.00 0.00 41.70 3.46
914 3541 2.105477 GGGCATGAGCTAGAGAATGGAA 59.895 50.000 0.00 0.00 41.70 3.53
915 3542 1.696336 GGGCATGAGCTAGAGAATGGA 59.304 52.381 0.00 0.00 41.70 3.41
916 3543 1.607509 CGGGCATGAGCTAGAGAATGG 60.608 57.143 0.00 0.00 41.70 3.16
917 3544 1.069823 ACGGGCATGAGCTAGAGAATG 59.930 52.381 0.00 0.00 41.70 2.67
918 3545 1.342819 GACGGGCATGAGCTAGAGAAT 59.657 52.381 0.00 0.00 41.70 2.40
959 3620 3.625649 AGCTCAAGAATGGGAGAAGTC 57.374 47.619 0.00 0.00 32.87 3.01
960 3621 4.081198 CAGTAGCTCAAGAATGGGAGAAGT 60.081 45.833 0.00 0.00 32.87 3.01
1091 3801 0.898320 CATGAAGTCCTCCTCCACGT 59.102 55.000 0.00 0.00 0.00 4.49
1130 3840 4.020617 CCTCCAGCGCCTCAACCA 62.021 66.667 2.29 0.00 0.00 3.67
1157 3867 2.217038 TTCTCCTTGCCCACTCGCT 61.217 57.895 0.00 0.00 0.00 4.93
1168 3878 1.003003 GCTGAGCTTCCTGTTCTCCTT 59.997 52.381 0.00 0.00 0.00 3.36
1225 3935 2.598394 GCTGACCTTGCCCTGCAA 60.598 61.111 1.13 1.13 46.80 4.08
1269 3979 2.345991 GACTGGCGGTGGCTGTTA 59.654 61.111 2.25 0.00 39.96 2.41
1511 4221 0.827368 GTAGAGCTTGGAGACCCTGG 59.173 60.000 0.00 0.00 0.00 4.45
1590 4306 0.753262 ATCACGGGGAAGAAGATCGG 59.247 55.000 0.00 0.00 0.00 4.18
1603 4319 2.159747 TCGTCGCGATCTATAATCACGG 60.160 50.000 14.06 0.00 0.00 4.94
1613 4329 2.516923 CTACAACTTTCGTCGCGATCT 58.483 47.619 14.06 0.00 35.23 2.75
2089 4825 2.282462 AGGTTTTCGGCCAGGCAG 60.282 61.111 15.19 10.09 0.00 4.85
2096 4832 3.294493 TGCTGGCAGGTTTTCGGC 61.294 61.111 17.64 0.00 0.00 5.54
2100 4836 1.035139 CTCTTGTGCTGGCAGGTTTT 58.965 50.000 17.64 0.00 0.00 2.43
2215 8187 1.354337 CTCACGTCAGGGTTGCATCG 61.354 60.000 0.00 0.00 0.00 3.84
2218 8190 2.280797 GCTCACGTCAGGGTTGCA 60.281 61.111 0.00 0.00 0.00 4.08
2311 8305 3.417275 CTAGGTCTGCCGCGGTCAG 62.417 68.421 31.20 31.20 40.50 3.51
2379 8373 0.976641 TGATCTCCACTGGTTTCGCT 59.023 50.000 0.00 0.00 0.00 4.93
2404 8398 0.891373 TTTCCAGAGGAGCTCGTCAG 59.109 55.000 31.77 25.37 35.36 3.51
2443 8437 0.379316 CCACCATCGTCGTCGTGATA 59.621 55.000 1.33 0.00 38.33 2.15
2464 8458 1.286501 TGGATGCATAGAAACGTCGC 58.713 50.000 0.00 0.00 0.00 5.19
2491 8488 5.953183 AGATGAACTGCGCAAAATATTCAA 58.047 33.333 13.05 2.83 30.46 2.69
2503 8715 5.220472 CCAGTTTACATGTAGATGAACTGCG 60.220 44.000 27.80 21.06 40.17 5.18
2538 8750 1.790755 TCGCACGCTCACTAATTTGT 58.209 45.000 0.00 0.00 0.00 2.83
2539 8751 2.157668 AGTTCGCACGCTCACTAATTTG 59.842 45.455 0.00 0.00 0.00 2.32
2543 8755 0.312729 TCAGTTCGCACGCTCACTAA 59.687 50.000 0.00 0.00 0.00 2.24
2554 8766 4.214437 CAGAAAAGTCAACATCAGTTCGC 58.786 43.478 0.00 0.00 35.28 4.70
2555 8767 4.024556 AGCAGAAAAGTCAACATCAGTTCG 60.025 41.667 0.00 0.00 35.28 3.95
2608 8820 1.395954 CATGTGTTCATGCCTCGACAG 59.604 52.381 0.00 0.00 43.66 3.51
2619 8831 5.259832 TGATGTTTTTGAGCATGTGTTCA 57.740 34.783 0.00 0.00 33.42 3.18
2642 8854 5.784906 AGGACAATGGGGTGAAAAATATTGT 59.215 36.000 0.00 0.00 40.32 2.71
2649 8861 1.337118 GCAGGACAATGGGGTGAAAA 58.663 50.000 0.00 0.00 0.00 2.29
2654 8866 0.251787 GAAAGGCAGGACAATGGGGT 60.252 55.000 0.00 0.00 0.00 4.95
2790 9002 7.362574 CCGGCCTTGAAACTTTATCTTTAATCA 60.363 37.037 0.00 0.00 0.00 2.57
2791 9003 6.972901 CCGGCCTTGAAACTTTATCTTTAATC 59.027 38.462 0.00 0.00 0.00 1.75
2792 9004 6.661805 TCCGGCCTTGAAACTTTATCTTTAAT 59.338 34.615 0.00 0.00 0.00 1.40
2793 9005 6.005198 TCCGGCCTTGAAACTTTATCTTTAA 58.995 36.000 0.00 0.00 0.00 1.52
2794 9006 5.413523 GTCCGGCCTTGAAACTTTATCTTTA 59.586 40.000 0.00 0.00 0.00 1.85
2795 9007 4.217767 GTCCGGCCTTGAAACTTTATCTTT 59.782 41.667 0.00 0.00 0.00 2.52
2796 9008 3.756963 GTCCGGCCTTGAAACTTTATCTT 59.243 43.478 0.00 0.00 0.00 2.40
2797 9009 3.344515 GTCCGGCCTTGAAACTTTATCT 58.655 45.455 0.00 0.00 0.00 1.98
2798 9010 2.095372 CGTCCGGCCTTGAAACTTTATC 59.905 50.000 0.00 0.00 0.00 1.75
2799 9011 2.081462 CGTCCGGCCTTGAAACTTTAT 58.919 47.619 0.00 0.00 0.00 1.40
2800 9012 1.070445 TCGTCCGGCCTTGAAACTTTA 59.930 47.619 0.00 0.00 0.00 1.85
2801 9013 0.179040 TCGTCCGGCCTTGAAACTTT 60.179 50.000 0.00 0.00 0.00 2.66
2802 9014 0.179040 TTCGTCCGGCCTTGAAACTT 60.179 50.000 0.00 0.00 0.00 2.66
2803 9015 0.602905 CTTCGTCCGGCCTTGAAACT 60.603 55.000 0.00 0.00 0.00 2.66
2804 9016 1.574702 CCTTCGTCCGGCCTTGAAAC 61.575 60.000 0.00 0.00 0.00 2.78
2805 9017 1.302192 CCTTCGTCCGGCCTTGAAA 60.302 57.895 0.00 0.00 0.00 2.69
2806 9018 2.345991 CCTTCGTCCGGCCTTGAA 59.654 61.111 0.00 0.00 0.00 2.69
2807 9019 3.702048 CCCTTCGTCCGGCCTTGA 61.702 66.667 0.00 0.00 0.00 3.02
2808 9020 3.702048 TCCCTTCGTCCGGCCTTG 61.702 66.667 0.00 0.00 0.00 3.61
2809 9021 3.703127 GTCCCTTCGTCCGGCCTT 61.703 66.667 0.00 0.00 0.00 4.35
2812 9024 3.735037 GATGGTCCCTTCGTCCGGC 62.735 68.421 0.00 0.00 0.00 6.13
2813 9025 2.298158 CTGATGGTCCCTTCGTCCGG 62.298 65.000 0.00 0.00 0.00 5.14
2814 9026 1.141881 CTGATGGTCCCTTCGTCCG 59.858 63.158 0.00 0.00 0.00 4.79
2815 9027 1.069358 GATCTGATGGTCCCTTCGTCC 59.931 57.143 0.00 0.00 0.00 4.79
2816 9028 1.269309 CGATCTGATGGTCCCTTCGTC 60.269 57.143 0.00 0.00 0.00 4.20
2817 9029 0.747255 CGATCTGATGGTCCCTTCGT 59.253 55.000 0.00 0.00 0.00 3.85
2818 9030 0.598680 GCGATCTGATGGTCCCTTCG 60.599 60.000 0.00 0.00 0.00 3.79
2819 9031 0.465705 TGCGATCTGATGGTCCCTTC 59.534 55.000 0.00 0.00 0.00 3.46
2820 9032 0.179000 GTGCGATCTGATGGTCCCTT 59.821 55.000 0.00 0.00 0.00 3.95
2821 9033 0.689080 AGTGCGATCTGATGGTCCCT 60.689 55.000 0.00 0.00 0.00 4.20
2822 9034 0.179000 AAGTGCGATCTGATGGTCCC 59.821 55.000 0.00 0.00 0.00 4.46
2823 9035 2.890808 TAAGTGCGATCTGATGGTCC 57.109 50.000 0.00 0.00 0.00 4.46
2824 9036 4.184629 AGTTTAAGTGCGATCTGATGGTC 58.815 43.478 0.00 0.00 0.00 4.02
2825 9037 4.207891 AGTTTAAGTGCGATCTGATGGT 57.792 40.909 0.00 0.00 0.00 3.55
2826 9038 4.631377 TCAAGTTTAAGTGCGATCTGATGG 59.369 41.667 0.00 0.00 0.00 3.51
2827 9039 5.446473 GGTCAAGTTTAAGTGCGATCTGATG 60.446 44.000 0.00 0.00 0.00 3.07
2828 9040 4.631813 GGTCAAGTTTAAGTGCGATCTGAT 59.368 41.667 0.00 0.00 0.00 2.90
2829 9041 3.994392 GGTCAAGTTTAAGTGCGATCTGA 59.006 43.478 0.00 0.00 0.00 3.27
2830 9042 3.997021 AGGTCAAGTTTAAGTGCGATCTG 59.003 43.478 0.00 0.00 0.00 2.90
2831 9043 3.997021 CAGGTCAAGTTTAAGTGCGATCT 59.003 43.478 0.00 0.00 0.00 2.75
2832 9044 3.746492 ACAGGTCAAGTTTAAGTGCGATC 59.254 43.478 0.00 0.00 0.00 3.69
2833 9045 3.740115 ACAGGTCAAGTTTAAGTGCGAT 58.260 40.909 0.00 0.00 0.00 4.58
2834 9046 3.128349 GACAGGTCAAGTTTAAGTGCGA 58.872 45.455 0.00 0.00 0.00 5.10
2835 9047 2.223377 GGACAGGTCAAGTTTAAGTGCG 59.777 50.000 1.41 0.00 0.00 5.34
2836 9048 2.552743 GGGACAGGTCAAGTTTAAGTGC 59.447 50.000 1.41 0.00 0.00 4.40
2837 9049 3.146847 GGGGACAGGTCAAGTTTAAGTG 58.853 50.000 1.41 0.00 0.00 3.16
2838 9050 2.781174 TGGGGACAGGTCAAGTTTAAGT 59.219 45.455 1.41 0.00 35.01 2.24
2839 9051 3.502123 TGGGGACAGGTCAAGTTTAAG 57.498 47.619 1.41 0.00 35.01 1.85
2853 9065 1.556451 ACTTGGTTACCGTATGGGGAC 59.444 52.381 5.82 3.27 41.60 4.46
2854 9066 1.555992 CACTTGGTTACCGTATGGGGA 59.444 52.381 5.82 0.00 41.60 4.81
2855 9067 1.279846 ACACTTGGTTACCGTATGGGG 59.720 52.381 5.82 0.00 41.60 4.96
2856 9068 2.773993 ACACTTGGTTACCGTATGGG 57.226 50.000 5.82 0.00 40.75 4.00
2857 9069 3.004862 GGAACACTTGGTTACCGTATGG 58.995 50.000 0.00 0.00 40.63 2.74
2858 9070 3.930848 GAGGAACACTTGGTTACCGTATG 59.069 47.826 0.00 0.00 41.63 2.39
2859 9071 3.055602 GGAGGAACACTTGGTTACCGTAT 60.056 47.826 0.00 0.00 41.63 3.06
2860 9072 2.299867 GGAGGAACACTTGGTTACCGTA 59.700 50.000 0.00 0.00 41.63 4.02
2861 9073 1.071228 GGAGGAACACTTGGTTACCGT 59.929 52.381 0.00 0.00 41.63 4.83
2862 9074 1.804601 GGAGGAACACTTGGTTACCG 58.195 55.000 0.00 0.00 41.63 4.02
2863 9075 1.345415 TCGGAGGAACACTTGGTTACC 59.655 52.381 0.00 0.00 41.63 2.85
2864 9076 2.825861 TCGGAGGAACACTTGGTTAC 57.174 50.000 0.00 0.00 40.63 2.50
2865 9077 3.842007 TTTCGGAGGAACACTTGGTTA 57.158 42.857 0.00 0.00 40.63 2.85
2866 9078 2.721425 TTTCGGAGGAACACTTGGTT 57.279 45.000 0.00 0.00 44.10 3.67
2867 9079 2.504367 CATTTCGGAGGAACACTTGGT 58.496 47.619 0.00 0.00 0.00 3.67
2868 9080 1.200020 GCATTTCGGAGGAACACTTGG 59.800 52.381 0.00 0.00 0.00 3.61
2869 9081 2.154462 AGCATTTCGGAGGAACACTTG 58.846 47.619 0.00 0.00 0.00 3.16
2870 9082 2.427506 GAGCATTTCGGAGGAACACTT 58.572 47.619 0.00 0.00 0.00 3.16
2871 9083 1.339151 GGAGCATTTCGGAGGAACACT 60.339 52.381 0.00 0.00 0.00 3.55
2872 9084 1.087501 GGAGCATTTCGGAGGAACAC 58.912 55.000 0.00 0.00 0.00 3.32
2873 9085 0.391130 CGGAGCATTTCGGAGGAACA 60.391 55.000 0.00 0.00 0.00 3.18
2874 9086 0.391263 ACGGAGCATTTCGGAGGAAC 60.391 55.000 0.00 0.00 0.00 3.62
2875 9087 0.323629 AACGGAGCATTTCGGAGGAA 59.676 50.000 0.00 0.00 0.00 3.36
2876 9088 0.323629 AAACGGAGCATTTCGGAGGA 59.676 50.000 0.00 0.00 0.00 3.71
2877 9089 1.135689 CAAAACGGAGCATTTCGGAGG 60.136 52.381 0.00 0.00 0.00 4.30
2878 9090 1.535462 ACAAAACGGAGCATTTCGGAG 59.465 47.619 0.00 0.00 0.00 4.63
2879 9091 1.600023 ACAAAACGGAGCATTTCGGA 58.400 45.000 0.00 0.00 0.00 4.55
2880 9092 3.488489 CTTACAAAACGGAGCATTTCGG 58.512 45.455 0.00 0.00 0.00 4.30
2881 9093 2.908626 GCTTACAAAACGGAGCATTTCG 59.091 45.455 0.00 0.00 35.29 3.46
2882 9094 3.668656 GTGCTTACAAAACGGAGCATTTC 59.331 43.478 0.00 0.00 45.69 2.17
2883 9095 3.638484 GTGCTTACAAAACGGAGCATTT 58.362 40.909 0.00 0.00 45.69 2.32
2884 9096 2.350388 CGTGCTTACAAAACGGAGCATT 60.350 45.455 0.00 0.00 45.69 3.56
2885 9097 1.196808 CGTGCTTACAAAACGGAGCAT 59.803 47.619 0.00 0.00 45.69 3.79
2886 9098 0.584396 CGTGCTTACAAAACGGAGCA 59.416 50.000 0.00 0.00 42.36 4.26
2887 9099 0.724785 GCGTGCTTACAAAACGGAGC 60.725 55.000 0.00 0.00 37.77 4.70
2888 9100 0.450482 CGCGTGCTTACAAAACGGAG 60.450 55.000 0.00 0.00 37.77 4.63
2889 9101 1.565591 CGCGTGCTTACAAAACGGA 59.434 52.632 0.00 0.00 37.77 4.69
2890 9102 1.439693 CCGCGTGCTTACAAAACGG 60.440 57.895 4.92 0.00 37.77 4.44
2891 9103 2.072654 GCCGCGTGCTTACAAAACG 61.073 57.895 4.92 0.00 40.22 3.60
2892 9104 0.386731 ATGCCGCGTGCTTACAAAAC 60.387 50.000 18.14 0.00 42.00 2.43
2893 9105 0.386605 CATGCCGCGTGCTTACAAAA 60.387 50.000 18.14 0.00 42.00 2.44
2894 9106 1.208870 CATGCCGCGTGCTTACAAA 59.791 52.632 18.14 0.33 42.00 2.83
2895 9107 2.866750 CATGCCGCGTGCTTACAA 59.133 55.556 18.14 0.97 42.00 2.41
2896 9108 3.798650 GCATGCCGCGTGCTTACA 61.799 61.111 26.94 2.03 42.44 2.41
2897 9109 4.536687 GGCATGCCGCGTGCTTAC 62.537 66.667 31.17 15.34 44.78 2.34
2902 9114 3.556543 AAGTTTGGCATGCCGCGTG 62.557 57.895 30.87 8.31 43.84 5.34
2903 9115 2.747507 GAAAGTTTGGCATGCCGCGT 62.748 55.000 30.87 18.42 43.84 6.01
2904 9116 2.049248 AAAGTTTGGCATGCCGCG 60.049 55.556 30.87 0.00 43.84 6.46
2905 9117 0.733909 GAGAAAGTTTGGCATGCCGC 60.734 55.000 30.87 22.38 39.42 6.53
2906 9118 0.597568 TGAGAAAGTTTGGCATGCCG 59.402 50.000 30.87 0.00 39.42 5.69
2907 9119 2.802247 GTTTGAGAAAGTTTGGCATGCC 59.198 45.455 30.54 30.54 0.00 4.40
2908 9120 3.492011 CAGTTTGAGAAAGTTTGGCATGC 59.508 43.478 9.90 9.90 0.00 4.06
2909 9121 4.935702 TCAGTTTGAGAAAGTTTGGCATG 58.064 39.130 0.00 0.00 0.00 4.06
2910 9122 5.796424 ATCAGTTTGAGAAAGTTTGGCAT 57.204 34.783 0.00 0.00 0.00 4.40
2911 9123 5.350633 CAATCAGTTTGAGAAAGTTTGGCA 58.649 37.500 0.00 0.00 37.53 4.92
2912 9124 4.209911 GCAATCAGTTTGAGAAAGTTTGGC 59.790 41.667 0.00 0.00 37.53 4.52
2913 9125 5.350633 TGCAATCAGTTTGAGAAAGTTTGG 58.649 37.500 0.00 0.00 37.53 3.28
2914 9126 6.532657 ACTTGCAATCAGTTTGAGAAAGTTTG 59.467 34.615 0.00 0.00 37.53 2.93
2915 9127 6.633856 ACTTGCAATCAGTTTGAGAAAGTTT 58.366 32.000 0.00 0.00 37.53 2.66
2916 9128 6.212888 ACTTGCAATCAGTTTGAGAAAGTT 57.787 33.333 0.00 0.00 37.53 2.66
2917 9129 5.841957 ACTTGCAATCAGTTTGAGAAAGT 57.158 34.783 0.00 0.00 37.53 2.66
2918 9130 7.529880 AAAACTTGCAATCAGTTTGAGAAAG 57.470 32.000 14.17 0.00 37.53 2.62
2919 9131 8.250332 AGTAAAACTTGCAATCAGTTTGAGAAA 58.750 29.630 14.17 0.00 37.53 2.52
2920 9132 7.771183 AGTAAAACTTGCAATCAGTTTGAGAA 58.229 30.769 14.17 1.09 37.53 2.87
2921 9133 7.333528 AGTAAAACTTGCAATCAGTTTGAGA 57.666 32.000 14.17 2.92 37.53 3.27
2922 9134 7.321271 CGTAGTAAAACTTGCAATCAGTTTGAG 59.679 37.037 14.17 0.00 37.53 3.02
2923 9135 7.129622 CGTAGTAAAACTTGCAATCAGTTTGA 58.870 34.615 14.17 5.75 37.53 2.69
2924 9136 6.359617 CCGTAGTAAAACTTGCAATCAGTTTG 59.640 38.462 14.17 3.06 36.12 2.93
2925 9137 6.435428 CCGTAGTAAAACTTGCAATCAGTTT 58.565 36.000 8.82 8.82 37.36 2.66
2926 9138 5.562113 GCCGTAGTAAAACTTGCAATCAGTT 60.562 40.000 0.00 0.00 0.00 3.16
2927 9139 4.083484 GCCGTAGTAAAACTTGCAATCAGT 60.083 41.667 0.00 0.00 0.00 3.41
2928 9140 4.403453 GCCGTAGTAAAACTTGCAATCAG 58.597 43.478 0.00 0.00 0.00 2.90
2929 9141 3.189702 GGCCGTAGTAAAACTTGCAATCA 59.810 43.478 0.00 0.00 0.00 2.57
2930 9142 3.439129 AGGCCGTAGTAAAACTTGCAATC 59.561 43.478 0.00 0.00 0.00 2.67
2931 9143 3.418047 AGGCCGTAGTAAAACTTGCAAT 58.582 40.909 0.00 0.00 0.00 3.56
2932 9144 2.853705 AGGCCGTAGTAAAACTTGCAA 58.146 42.857 0.00 0.00 0.00 4.08
2933 9145 2.554370 AGGCCGTAGTAAAACTTGCA 57.446 45.000 0.00 0.00 0.00 4.08
2934 9146 3.593096 AGTAGGCCGTAGTAAAACTTGC 58.407 45.455 0.00 0.00 0.00 4.01
2935 9147 5.809051 CCTAAGTAGGCCGTAGTAAAACTTG 59.191 44.000 0.00 0.00 36.53 3.16
2936 9148 5.716703 TCCTAAGTAGGCCGTAGTAAAACTT 59.283 40.000 0.00 1.46 43.31 2.66
2937 9149 5.264395 TCCTAAGTAGGCCGTAGTAAAACT 58.736 41.667 0.00 0.00 43.31 2.66
2938 9150 5.582689 TCCTAAGTAGGCCGTAGTAAAAC 57.417 43.478 0.00 0.00 43.31 2.43
2939 9151 6.603940 TTTCCTAAGTAGGCCGTAGTAAAA 57.396 37.500 0.00 0.00 43.31 1.52
2940 9152 6.796785 ATTTCCTAAGTAGGCCGTAGTAAA 57.203 37.500 0.00 0.00 43.31 2.01
2941 9153 7.725397 TGATATTTCCTAAGTAGGCCGTAGTAA 59.275 37.037 0.00 0.00 43.31 2.24
2942 9154 7.233632 TGATATTTCCTAAGTAGGCCGTAGTA 58.766 38.462 0.00 0.00 43.31 1.82
2943 9155 6.073314 TGATATTTCCTAAGTAGGCCGTAGT 58.927 40.000 0.00 0.00 43.31 2.73
2944 9156 6.585695 TGATATTTCCTAAGTAGGCCGTAG 57.414 41.667 0.00 0.00 43.31 3.51
2945 9157 6.722590 TCATGATATTTCCTAAGTAGGCCGTA 59.277 38.462 0.00 0.00 43.31 4.02
2946 9158 5.542635 TCATGATATTTCCTAAGTAGGCCGT 59.457 40.000 0.00 0.00 43.31 5.68
2947 9159 6.037786 TCATGATATTTCCTAAGTAGGCCG 57.962 41.667 0.00 0.00 43.31 6.13
2948 9160 7.988028 GGTATCATGATATTTCCTAAGTAGGCC 59.012 40.741 18.18 0.00 43.31 5.19
2949 9161 8.540388 TGGTATCATGATATTTCCTAAGTAGGC 58.460 37.037 18.18 0.84 43.31 3.93
2967 9179 6.509418 AAAACTAAACGTGCATGGTATCAT 57.491 33.333 11.36 0.00 0.00 2.45
2968 9180 5.950758 AAAACTAAACGTGCATGGTATCA 57.049 34.783 11.36 0.00 0.00 2.15
3010 9222 9.683069 GCTAATTTGTCTTGAAATCTCAAAAGA 57.317 29.630 0.00 0.00 41.05 2.52
3011 9223 9.688592 AGCTAATTTGTCTTGAAATCTCAAAAG 57.311 29.630 0.00 0.00 41.05 2.27
3013 9225 9.683069 GAAGCTAATTTGTCTTGAAATCTCAAA 57.317 29.630 0.00 0.00 41.05 2.69
3014 9226 8.017373 CGAAGCTAATTTGTCTTGAAATCTCAA 58.983 33.333 0.00 0.00 39.30 3.02
3015 9227 7.173218 ACGAAGCTAATTTGTCTTGAAATCTCA 59.827 33.333 0.00 0.00 28.55 3.27
3016 9228 7.522374 ACGAAGCTAATTTGTCTTGAAATCTC 58.478 34.615 0.00 0.00 28.55 2.75
3017 9229 7.440523 ACGAAGCTAATTTGTCTTGAAATCT 57.559 32.000 0.00 0.00 28.55 2.40
3018 9230 8.507470 AAACGAAGCTAATTTGTCTTGAAATC 57.493 30.769 0.00 0.00 34.17 2.17
3019 9231 8.871686 AAAACGAAGCTAATTTGTCTTGAAAT 57.128 26.923 0.00 0.00 34.17 2.17
3020 9232 7.165154 CGAAAACGAAGCTAATTTGTCTTGAAA 59.835 33.333 0.00 0.00 34.17 2.69
3021 9233 6.631238 CGAAAACGAAGCTAATTTGTCTTGAA 59.369 34.615 0.00 0.00 34.17 2.69
3022 9234 6.133392 CGAAAACGAAGCTAATTTGTCTTGA 58.867 36.000 0.00 0.00 34.17 3.02
3023 9235 5.164282 GCGAAAACGAAGCTAATTTGTCTTG 60.164 40.000 0.00 0.00 34.17 3.02
3024 9236 4.909880 GCGAAAACGAAGCTAATTTGTCTT 59.090 37.500 0.00 0.00 34.17 3.01
3025 9237 4.464112 GCGAAAACGAAGCTAATTTGTCT 58.536 39.130 0.00 0.00 34.17 3.41
3026 9238 3.602489 GGCGAAAACGAAGCTAATTTGTC 59.398 43.478 0.00 0.00 34.17 3.18
3027 9239 3.561503 GGCGAAAACGAAGCTAATTTGT 58.438 40.909 0.00 0.00 37.08 2.83
3028 9240 2.588106 CGGCGAAAACGAAGCTAATTTG 59.412 45.455 0.00 0.00 0.00 2.32
3029 9241 2.224784 ACGGCGAAAACGAAGCTAATTT 59.775 40.909 16.62 0.00 34.93 1.82
3030 9242 1.802365 ACGGCGAAAACGAAGCTAATT 59.198 42.857 16.62 0.00 34.93 1.40
3031 9243 1.435577 ACGGCGAAAACGAAGCTAAT 58.564 45.000 16.62 0.00 34.93 1.73
3032 9244 1.219646 AACGGCGAAAACGAAGCTAA 58.780 45.000 16.62 0.00 34.93 3.09
3033 9245 2.063156 TAACGGCGAAAACGAAGCTA 57.937 45.000 16.62 0.00 34.93 3.32
3034 9246 1.070376 GTTAACGGCGAAAACGAAGCT 60.070 47.619 16.62 0.00 34.93 3.74
3035 9247 1.311839 GTTAACGGCGAAAACGAAGC 58.688 50.000 16.62 0.00 34.93 3.86
3036 9248 2.649140 TGTTAACGGCGAAAACGAAG 57.351 45.000 16.62 0.00 34.93 3.79
3037 9249 2.094894 TGTTGTTAACGGCGAAAACGAA 59.905 40.909 16.62 10.91 34.93 3.85
3038 9250 1.662629 TGTTGTTAACGGCGAAAACGA 59.337 42.857 16.62 14.03 34.93 3.85
3039 9251 1.769067 GTGTTGTTAACGGCGAAAACG 59.231 47.619 16.62 0.00 37.36 3.60
3040 9252 2.110990 GGTGTTGTTAACGGCGAAAAC 58.889 47.619 16.62 17.33 0.00 2.43
3041 9253 2.015587 AGGTGTTGTTAACGGCGAAAA 58.984 42.857 16.62 3.92 0.00 2.29
3042 9254 1.666054 AGGTGTTGTTAACGGCGAAA 58.334 45.000 16.62 4.35 0.00 3.46
3043 9255 2.134346 GTAGGTGTTGTTAACGGCGAA 58.866 47.619 16.62 0.00 0.00 4.70
3044 9256 1.605202 GGTAGGTGTTGTTAACGGCGA 60.605 52.381 16.62 0.00 0.00 5.54
3045 9257 0.792031 GGTAGGTGTTGTTAACGGCG 59.208 55.000 4.80 4.80 0.00 6.46
3046 9258 1.881591 TGGTAGGTGTTGTTAACGGC 58.118 50.000 0.26 0.00 0.00 5.68
3047 9259 4.276431 ACATTTGGTAGGTGTTGTTAACGG 59.724 41.667 0.26 0.00 0.00 4.44
3048 9260 5.209240 CACATTTGGTAGGTGTTGTTAACG 58.791 41.667 0.26 0.00 0.00 3.18
3049 9261 4.979815 GCACATTTGGTAGGTGTTGTTAAC 59.020 41.667 0.00 0.00 35.05 2.01
3050 9262 4.261238 CGCACATTTGGTAGGTGTTGTTAA 60.261 41.667 0.00 0.00 35.05 2.01
3051 9263 3.251245 CGCACATTTGGTAGGTGTTGTTA 59.749 43.478 0.00 0.00 35.05 2.41
3052 9264 2.034053 CGCACATTTGGTAGGTGTTGTT 59.966 45.455 0.00 0.00 35.05 2.83
3053 9265 1.606668 CGCACATTTGGTAGGTGTTGT 59.393 47.619 0.00 0.00 35.05 3.32
3054 9266 1.606668 ACGCACATTTGGTAGGTGTTG 59.393 47.619 0.00 0.00 35.05 3.33
3055 9267 1.975660 ACGCACATTTGGTAGGTGTT 58.024 45.000 0.00 0.00 35.05 3.32
3056 9268 2.843401 TACGCACATTTGGTAGGTGT 57.157 45.000 0.00 0.00 35.05 4.16
3057 9269 4.695217 AATTACGCACATTTGGTAGGTG 57.305 40.909 0.00 0.00 35.68 4.00
3058 9270 5.054390 CAAATTACGCACATTTGGTAGGT 57.946 39.130 6.64 0.00 37.78 3.08
3064 9276 4.555262 AGGAACCAAATTACGCACATTTG 58.445 39.130 7.31 7.31 40.11 2.32
3065 9277 4.864704 AGGAACCAAATTACGCACATTT 57.135 36.364 0.00 0.00 0.00 2.32
3066 9278 4.864704 AAGGAACCAAATTACGCACATT 57.135 36.364 0.00 0.00 0.00 2.71
3067 9279 7.633193 TTATAAGGAACCAAATTACGCACAT 57.367 32.000 0.00 0.00 0.00 3.21
3068 9280 7.337184 TGATTATAAGGAACCAAATTACGCACA 59.663 33.333 0.00 0.00 0.00 4.57
3069 9281 7.699566 TGATTATAAGGAACCAAATTACGCAC 58.300 34.615 0.00 0.00 0.00 5.34
3070 9282 7.867305 TGATTATAAGGAACCAAATTACGCA 57.133 32.000 0.00 0.00 0.00 5.24
3071 9283 7.807907 CCATGATTATAAGGAACCAAATTACGC 59.192 37.037 0.00 0.00 0.00 4.42
3072 9284 9.062524 TCCATGATTATAAGGAACCAAATTACG 57.937 33.333 0.00 0.00 0.00 3.18
3075 9287 9.136323 GTCTCCATGATTATAAGGAACCAAATT 57.864 33.333 0.00 0.00 0.00 1.82
3076 9288 8.281531 TGTCTCCATGATTATAAGGAACCAAAT 58.718 33.333 0.00 0.00 0.00 2.32
3077 9289 7.638444 TGTCTCCATGATTATAAGGAACCAAA 58.362 34.615 0.00 0.00 0.00 3.28
3078 9290 7.206789 TGTCTCCATGATTATAAGGAACCAA 57.793 36.000 0.00 0.00 0.00 3.67
3079 9291 6.823286 TGTCTCCATGATTATAAGGAACCA 57.177 37.500 0.00 0.00 0.00 3.67
3106 9318 3.803231 TGTTGATGTTTTTGAGCACATGC 59.197 39.130 0.00 0.00 42.49 4.06
3107 9319 5.749588 TCTTGTTGATGTTTTTGAGCACATG 59.250 36.000 0.00 0.00 33.62 3.21
3108 9320 5.904941 TCTTGTTGATGTTTTTGAGCACAT 58.095 33.333 0.00 0.00 36.28 3.21
3109 9321 5.321959 TCTTGTTGATGTTTTTGAGCACA 57.678 34.783 0.00 0.00 0.00 4.57
3110 9322 6.256321 ACAATCTTGTTGATGTTTTTGAGCAC 59.744 34.615 0.00 0.00 38.47 4.40
3111 9323 6.339730 ACAATCTTGTTGATGTTTTTGAGCA 58.660 32.000 0.00 0.00 38.47 4.26
3112 9324 6.833342 ACAATCTTGTTGATGTTTTTGAGC 57.167 33.333 0.00 0.00 38.47 4.26
3126 9338 4.388485 GAAAATGGGGCAAACAATCTTGT 58.612 39.130 0.00 0.00 44.72 3.16
3127 9339 3.752747 GGAAAATGGGGCAAACAATCTTG 59.247 43.478 0.00 0.00 0.00 3.02
3128 9340 3.652387 AGGAAAATGGGGCAAACAATCTT 59.348 39.130 0.00 0.00 0.00 2.40
3129 9341 3.008266 CAGGAAAATGGGGCAAACAATCT 59.992 43.478 0.00 0.00 0.00 2.40
3130 9342 3.337358 CAGGAAAATGGGGCAAACAATC 58.663 45.455 0.00 0.00 0.00 2.67
3131 9343 2.552809 GCAGGAAAATGGGGCAAACAAT 60.553 45.455 0.00 0.00 0.00 2.71
3132 9344 1.202746 GCAGGAAAATGGGGCAAACAA 60.203 47.619 0.00 0.00 0.00 2.83
3133 9345 0.396060 GCAGGAAAATGGGGCAAACA 59.604 50.000 0.00 0.00 0.00 2.83
3134 9346 0.396060 TGCAGGAAAATGGGGCAAAC 59.604 50.000 0.00 0.00 0.00 2.93
3135 9347 1.360185 ATGCAGGAAAATGGGGCAAA 58.640 45.000 0.00 0.00 38.08 3.68
3136 9348 1.278699 GAATGCAGGAAAATGGGGCAA 59.721 47.619 0.00 0.00 38.08 4.52
3137 9349 0.903942 GAATGCAGGAAAATGGGGCA 59.096 50.000 0.00 0.00 39.03 5.36
3138 9350 1.134610 CAGAATGCAGGAAAATGGGGC 60.135 52.381 0.00 0.00 0.00 5.80
3139 9351 2.973694 CAGAATGCAGGAAAATGGGG 57.026 50.000 0.00 0.00 0.00 4.96


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.