Multiple sequence alignment - TraesCS7A01G508700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G508700 chr7A 100.000 3090 0 0 1 3090 696551673 696554762 0.000000e+00 5707.0
1 TraesCS7A01G508700 chr7A 90.909 1177 77 15 968 2128 696723495 696722333 0.000000e+00 1554.0
2 TraesCS7A01G508700 chr7A 86.256 1135 117 21 961 2079 696623505 696622394 0.000000e+00 1195.0
3 TraesCS7A01G508700 chr7A 84.921 378 39 12 441 811 696724035 696723669 1.750000e-97 366.0
4 TraesCS7A01G508700 chr7A 81.595 326 28 17 495 811 696624009 696623707 1.110000e-59 241.0
5 TraesCS7A01G508700 chr7A 85.088 114 9 5 824 932 696623611 696623501 3.260000e-20 110.0
6 TraesCS7A01G508700 chr7B 89.654 2310 162 30 828 3090 686849886 686852165 0.000000e+00 2870.0
7 TraesCS7A01G508700 chr7B 92.229 1171 72 9 963 2128 688163051 688164207 0.000000e+00 1640.0
8 TraesCS7A01G508700 chr7B 91.773 1179 69 16 963 2128 686966482 686965319 0.000000e+00 1615.0
9 TraesCS7A01G508700 chr7B 84.711 1282 135 34 824 2079 686888593 686887347 0.000000e+00 1225.0
10 TraesCS7A01G508700 chr7B 82.283 508 64 18 440 934 686966969 686966475 1.710000e-112 416.0
11 TraesCS7A01G508700 chr7B 85.749 414 26 17 410 811 686849414 686849806 1.030000e-109 407.0
12 TraesCS7A01G508700 chr7B 83.768 345 23 11 478 811 686889011 686888689 2.330000e-76 296.0
13 TraesCS7A01G508700 chr7B 85.965 171 17 4 441 607 688162631 688162798 3.170000e-40 176.0
14 TraesCS7A01G508700 chr7B 91.589 107 5 2 696 802 688162812 688162914 8.930000e-31 145.0
15 TraesCS7A01G508700 chr7B 96.774 62 2 0 873 934 688162997 688163058 1.520000e-18 104.0
16 TraesCS7A01G508700 chr7D 89.712 1565 98 28 606 2124 604474939 604476486 0.000000e+00 1940.0
17 TraesCS7A01G508700 chr7D 92.807 1279 77 7 833 2105 603847737 603849006 0.000000e+00 1838.0
18 TraesCS7A01G508700 chr7D 90.204 1174 94 12 968 2128 604531042 604532207 0.000000e+00 1511.0
19 TraesCS7A01G508700 chr7D 86.268 1136 113 17 961 2079 603982530 603983639 0.000000e+00 1194.0
20 TraesCS7A01G508700 chr7D 83.578 341 26 13 478 811 603982012 603982329 3.010000e-75 292.0
21 TraesCS7A01G508700 chr7D 89.444 180 15 2 632 811 603847474 603847649 1.120000e-54 224.0
22 TraesCS7A01G508700 chr7D 82.443 262 17 11 559 811 604530609 604530850 5.220000e-48 202.0
23 TraesCS7A01G508700 chr7D 86.111 108 9 5 831 933 603982426 603982532 9.060000e-21 111.0
24 TraesCS7A01G508700 chr5D 82.331 266 36 1 2227 2481 230163536 230163271 1.440000e-53 220.0
25 TraesCS7A01G508700 chr5D 86.170 94 13 0 319 412 37920398 37920305 5.450000e-18 102.0
26 TraesCS7A01G508700 chr5B 80.075 266 39 7 2227 2480 188020719 188020982 5.260000e-43 185.0
27 TraesCS7A01G508700 chr1A 80.237 253 40 7 2223 2467 431071127 431071377 6.810000e-42 182.0
28 TraesCS7A01G508700 chr1A 89.412 85 9 0 325 409 358735194 358735110 1.170000e-19 108.0
29 TraesCS7A01G508700 chr1A 85.149 101 14 1 324 424 133417548 133417449 5.450000e-18 102.0
30 TraesCS7A01G508700 chr6D 78.967 271 45 6 2222 2481 327633476 327633207 1.140000e-39 174.0
31 TraesCS7A01G508700 chr1B 78.327 263 46 7 2225 2479 173971415 173971674 3.190000e-35 159.0
32 TraesCS7A01G508700 chr1B 88.889 90 10 0 323 412 623974954 623975043 9.060000e-21 111.0
33 TraesCS7A01G508700 chr1D 87.255 102 11 2 324 424 287427895 287427995 7.000000e-22 115.0
34 TraesCS7A01G508700 chr4D 79.070 172 25 4 2310 2481 450508855 450509015 1.170000e-19 108.0
35 TraesCS7A01G508700 chr6B 85.859 99 14 0 316 414 415874736 415874834 4.210000e-19 106.0
36 TraesCS7A01G508700 chr4A 87.778 90 11 0 325 414 713028139 713028228 4.210000e-19 106.0
37 TraesCS7A01G508700 chr4B 85.000 100 14 1 317 416 600126326 600126424 1.960000e-17 100.0
38 TraesCS7A01G508700 chr2A 83.810 105 16 1 308 412 189038144 189038247 7.050000e-17 99.0
39 TraesCS7A01G508700 chr2A 97.143 35 1 0 2312 2346 726545381 726545415 3.330000e-05 60.2
40 TraesCS7A01G508700 chr5A 77.397 146 32 1 32 176 573814955 573814810 5.490000e-13 86.1
41 TraesCS7A01G508700 chr3A 76.515 132 28 3 45 175 675302569 675302698 5.530000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G508700 chr7A 696551673 696554762 3089 False 5707.000000 5707 100.00000 1 3090 1 chr7A.!!$F1 3089
1 TraesCS7A01G508700 chr7A 696722333 696724035 1702 True 960.000000 1554 87.91500 441 2128 2 chr7A.!!$R2 1687
2 TraesCS7A01G508700 chr7A 696622394 696624009 1615 True 515.333333 1195 84.31300 495 2079 3 chr7A.!!$R1 1584
3 TraesCS7A01G508700 chr7B 686849414 686852165 2751 False 1638.500000 2870 87.70150 410 3090 2 chr7B.!!$F1 2680
4 TraesCS7A01G508700 chr7B 686965319 686966969 1650 True 1015.500000 1615 87.02800 440 2128 2 chr7B.!!$R2 1688
5 TraesCS7A01G508700 chr7B 686887347 686889011 1664 True 760.500000 1225 84.23950 478 2079 2 chr7B.!!$R1 1601
6 TraesCS7A01G508700 chr7B 688162631 688164207 1576 False 516.250000 1640 91.63925 441 2128 4 chr7B.!!$F2 1687
7 TraesCS7A01G508700 chr7D 604474939 604476486 1547 False 1940.000000 1940 89.71200 606 2124 1 chr7D.!!$F1 1518
8 TraesCS7A01G508700 chr7D 603847474 603849006 1532 False 1031.000000 1838 91.12550 632 2105 2 chr7D.!!$F2 1473
9 TraesCS7A01G508700 chr7D 604530609 604532207 1598 False 856.500000 1511 86.32350 559 2128 2 chr7D.!!$F4 1569
10 TraesCS7A01G508700 chr7D 603982012 603983639 1627 False 532.333333 1194 85.31900 478 2079 3 chr7D.!!$F3 1601

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
114 115 0.035056 CCAAGGCACTGGTCCTTAGG 60.035 60.0 0.00 0.0 41.73 2.69 F
115 116 0.035056 CAAGGCACTGGTCCTTAGGG 60.035 60.0 0.00 0.0 41.73 3.53 F
218 219 0.036765 TTCATTCTAACGGCGGCAGT 60.037 50.0 13.24 0.0 0.00 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1582 1763 0.818296 CGAGGAAGAAGATGGACGGT 59.182 55.000 0.00 0.0 0.0 4.83 R
1876 2081 2.025155 CCGCTCTTCCTGCTACTAGAA 58.975 52.381 0.00 0.0 0.0 2.10 R
2208 2422 0.327591 TTTCCATGGCCCCAATTTGC 59.672 50.000 6.96 0.0 0.0 3.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.334413 GGTGCCGAGTTTAGGGTTT 57.666 52.632 0.00 0.00 0.00 3.27
19 20 1.162698 GGTGCCGAGTTTAGGGTTTC 58.837 55.000 0.00 0.00 0.00 2.78
20 21 1.271217 GGTGCCGAGTTTAGGGTTTCT 60.271 52.381 0.00 0.00 0.00 2.52
21 22 2.074576 GTGCCGAGTTTAGGGTTTCTC 58.925 52.381 0.00 0.00 0.00 2.87
22 23 1.337447 TGCCGAGTTTAGGGTTTCTCG 60.337 52.381 6.47 6.47 45.89 4.04
23 24 1.337541 GCCGAGTTTAGGGTTTCTCGT 60.338 52.381 11.38 0.00 45.19 4.18
24 25 2.603953 CCGAGTTTAGGGTTTCTCGTC 58.396 52.381 11.38 0.00 45.19 4.20
25 26 2.248487 CGAGTTTAGGGTTTCTCGTCG 58.752 52.381 0.00 0.00 42.83 5.12
26 27 2.095567 CGAGTTTAGGGTTTCTCGTCGA 60.096 50.000 0.00 0.00 42.83 4.20
27 28 3.240884 GAGTTTAGGGTTTCTCGTCGAC 58.759 50.000 5.18 5.18 0.00 4.20
28 29 1.981533 GTTTAGGGTTTCTCGTCGACG 59.018 52.381 31.30 31.30 41.45 5.12
29 30 0.109597 TTAGGGTTTCTCGTCGACGC 60.110 55.000 32.19 17.73 39.60 5.19
30 31 2.244436 TAGGGTTTCTCGTCGACGCG 62.244 60.000 32.19 26.74 39.60 6.01
31 32 2.127118 GGTTTCTCGTCGACGCGA 60.127 61.111 32.19 28.68 39.60 5.87
32 33 1.513586 GGTTTCTCGTCGACGCGAT 60.514 57.895 32.19 0.00 40.29 4.58
33 34 1.619207 GTTTCTCGTCGACGCGATG 59.381 57.895 32.19 20.36 43.28 3.84
34 35 1.513373 TTTCTCGTCGACGCGATGG 60.513 57.895 32.19 18.00 42.34 3.51
35 36 4.531912 TCTCGTCGACGCGATGGC 62.532 66.667 32.19 4.72 42.34 4.40
47 48 2.755836 GCGATGGCGAAATTATGTGT 57.244 45.000 0.00 0.00 40.82 3.72
48 49 2.639751 GCGATGGCGAAATTATGTGTC 58.360 47.619 0.00 0.00 40.82 3.67
49 50 2.287915 GCGATGGCGAAATTATGTGTCT 59.712 45.455 0.00 0.00 40.82 3.41
50 51 3.846023 GCGATGGCGAAATTATGTGTCTG 60.846 47.826 0.00 0.00 40.82 3.51
51 52 3.303329 CGATGGCGAAATTATGTGTCTGG 60.303 47.826 0.00 0.00 40.82 3.86
52 53 3.066291 TGGCGAAATTATGTGTCTGGT 57.934 42.857 0.00 0.00 0.00 4.00
53 54 3.417101 TGGCGAAATTATGTGTCTGGTT 58.583 40.909 0.00 0.00 0.00 3.67
54 55 3.438781 TGGCGAAATTATGTGTCTGGTTC 59.561 43.478 0.00 0.00 0.00 3.62
55 56 3.689649 GGCGAAATTATGTGTCTGGTTCT 59.310 43.478 0.00 0.00 0.00 3.01
56 57 4.156008 GGCGAAATTATGTGTCTGGTTCTT 59.844 41.667 0.00 0.00 0.00 2.52
57 58 5.335661 GGCGAAATTATGTGTCTGGTTCTTT 60.336 40.000 0.00 0.00 0.00 2.52
58 59 6.128117 GGCGAAATTATGTGTCTGGTTCTTTA 60.128 38.462 0.00 0.00 0.00 1.85
59 60 6.961554 GCGAAATTATGTGTCTGGTTCTTTAG 59.038 38.462 0.00 0.00 0.00 1.85
60 61 7.148474 GCGAAATTATGTGTCTGGTTCTTTAGA 60.148 37.037 0.00 0.00 0.00 2.10
61 62 8.883731 CGAAATTATGTGTCTGGTTCTTTAGAT 58.116 33.333 0.00 0.00 0.00 1.98
63 64 8.425577 AATTATGTGTCTGGTTCTTTAGATCG 57.574 34.615 0.00 0.00 0.00 3.69
64 65 5.661056 ATGTGTCTGGTTCTTTAGATCGA 57.339 39.130 0.00 0.00 0.00 3.59
65 66 5.661056 TGTGTCTGGTTCTTTAGATCGAT 57.339 39.130 0.00 0.00 0.00 3.59
66 67 6.037786 TGTGTCTGGTTCTTTAGATCGATT 57.962 37.500 0.00 0.00 0.00 3.34
67 68 6.100004 TGTGTCTGGTTCTTTAGATCGATTC 58.900 40.000 0.00 0.00 0.00 2.52
68 69 6.100004 GTGTCTGGTTCTTTAGATCGATTCA 58.900 40.000 0.00 0.00 0.00 2.57
69 70 6.590292 GTGTCTGGTTCTTTAGATCGATTCAA 59.410 38.462 0.00 0.00 0.00 2.69
70 71 7.117812 GTGTCTGGTTCTTTAGATCGATTCAAA 59.882 37.037 0.00 2.35 0.00 2.69
71 72 7.331934 TGTCTGGTTCTTTAGATCGATTCAAAG 59.668 37.037 19.19 19.19 0.00 2.77
72 73 7.332182 GTCTGGTTCTTTAGATCGATTCAAAGT 59.668 37.037 22.07 0.00 31.44 2.66
73 74 7.878127 TCTGGTTCTTTAGATCGATTCAAAGTT 59.122 33.333 22.07 0.00 31.44 2.66
74 75 8.391075 TGGTTCTTTAGATCGATTCAAAGTTT 57.609 30.769 22.07 0.00 31.44 2.66
75 76 8.504005 TGGTTCTTTAGATCGATTCAAAGTTTC 58.496 33.333 22.07 16.08 31.44 2.78
76 77 8.504005 GGTTCTTTAGATCGATTCAAAGTTTCA 58.496 33.333 22.07 8.86 31.44 2.69
77 78 9.878599 GTTCTTTAGATCGATTCAAAGTTTCAA 57.121 29.630 22.07 12.56 31.44 2.69
78 79 9.878599 TTCTTTAGATCGATTCAAAGTTTCAAC 57.121 29.630 22.07 0.00 31.44 3.18
79 80 8.221100 TCTTTAGATCGATTCAAAGTTTCAACG 58.779 33.333 22.07 0.00 31.44 4.10
80 81 5.283060 AGATCGATTCAAAGTTTCAACGG 57.717 39.130 0.00 0.00 0.00 4.44
81 82 3.262135 TCGATTCAAAGTTTCAACGGC 57.738 42.857 0.00 0.00 0.00 5.68
82 83 1.969256 CGATTCAAAGTTTCAACGGCG 59.031 47.619 4.80 4.80 0.00 6.46
83 84 2.349060 CGATTCAAAGTTTCAACGGCGA 60.349 45.455 16.62 0.00 0.00 5.54
84 85 2.748461 TTCAAAGTTTCAACGGCGAG 57.252 45.000 16.62 5.73 0.00 5.03
85 86 0.941542 TCAAAGTTTCAACGGCGAGG 59.058 50.000 16.62 4.84 0.00 4.63
86 87 0.941542 CAAAGTTTCAACGGCGAGGA 59.058 50.000 16.62 7.64 0.00 3.71
87 88 1.535462 CAAAGTTTCAACGGCGAGGAT 59.465 47.619 16.62 0.00 0.00 3.24
88 89 2.739913 CAAAGTTTCAACGGCGAGGATA 59.260 45.455 16.62 2.55 0.00 2.59
89 90 2.754946 AGTTTCAACGGCGAGGATAA 57.245 45.000 16.62 5.19 0.00 1.75
90 91 2.344025 AGTTTCAACGGCGAGGATAAC 58.656 47.619 16.62 15.44 0.00 1.89
91 92 1.060122 GTTTCAACGGCGAGGATAACG 59.940 52.381 16.62 0.00 0.00 3.18
92 93 0.527113 TTCAACGGCGAGGATAACGA 59.473 50.000 16.62 0.00 0.00 3.85
93 94 0.179156 TCAACGGCGAGGATAACGAC 60.179 55.000 16.62 0.00 35.25 4.34
94 95 0.179145 CAACGGCGAGGATAACGACT 60.179 55.000 16.62 0.00 36.56 4.18
95 96 0.100146 AACGGCGAGGATAACGACTC 59.900 55.000 16.62 0.00 36.56 3.36
96 97 1.008767 CGGCGAGGATAACGACTCC 60.009 63.158 0.00 0.00 36.56 3.85
97 98 1.721664 CGGCGAGGATAACGACTCCA 61.722 60.000 0.00 0.00 36.56 3.86
98 99 0.458669 GGCGAGGATAACGACTCCAA 59.541 55.000 0.00 0.00 35.75 3.53
99 100 1.536284 GGCGAGGATAACGACTCCAAG 60.536 57.143 0.00 0.00 35.75 3.61
100 101 1.536284 GCGAGGATAACGACTCCAAGG 60.536 57.143 0.00 0.00 35.08 3.61
101 102 1.536284 CGAGGATAACGACTCCAAGGC 60.536 57.143 0.00 0.00 35.08 4.35
102 103 1.480954 GAGGATAACGACTCCAAGGCA 59.519 52.381 0.00 0.00 35.08 4.75
103 104 1.207329 AGGATAACGACTCCAAGGCAC 59.793 52.381 0.00 0.00 35.08 5.01
105 106 2.271800 GATAACGACTCCAAGGCACTG 58.728 52.381 0.00 0.00 40.86 3.66
106 107 0.320374 TAACGACTCCAAGGCACTGG 59.680 55.000 0.00 0.00 40.86 4.00
107 108 1.696097 AACGACTCCAAGGCACTGGT 61.696 55.000 5.64 0.00 40.86 4.00
108 109 1.374758 CGACTCCAAGGCACTGGTC 60.375 63.158 5.64 0.00 40.86 4.02
109 110 1.003233 GACTCCAAGGCACTGGTCC 60.003 63.158 5.64 0.00 40.86 4.46
110 111 1.462238 ACTCCAAGGCACTGGTCCT 60.462 57.895 5.64 0.00 40.86 3.85
111 112 1.062488 ACTCCAAGGCACTGGTCCTT 61.062 55.000 5.64 0.00 44.31 3.36
112 113 0.984230 CTCCAAGGCACTGGTCCTTA 59.016 55.000 5.64 0.00 41.73 2.69
113 114 0.984230 TCCAAGGCACTGGTCCTTAG 59.016 55.000 5.64 0.00 41.73 2.18
114 115 0.035056 CCAAGGCACTGGTCCTTAGG 60.035 60.000 0.00 0.00 41.73 2.69
115 116 0.035056 CAAGGCACTGGTCCTTAGGG 60.035 60.000 0.00 0.00 41.73 3.53
116 117 1.208165 AAGGCACTGGTCCTTAGGGG 61.208 60.000 0.00 0.00 41.83 4.79
117 118 2.272471 GCACTGGTCCTTAGGGGC 59.728 66.667 0.00 0.00 36.26 5.80
118 119 2.602676 GCACTGGTCCTTAGGGGCA 61.603 63.158 0.00 0.00 39.39 5.36
119 120 1.299976 CACTGGTCCTTAGGGGCAC 59.700 63.158 0.00 0.00 39.39 5.01
120 121 1.151899 ACTGGTCCTTAGGGGCACA 60.152 57.895 0.00 0.00 39.39 4.57
121 122 0.550147 ACTGGTCCTTAGGGGCACAT 60.550 55.000 0.00 0.00 39.39 3.21
122 123 1.274184 ACTGGTCCTTAGGGGCACATA 60.274 52.381 0.00 0.00 39.39 2.29
123 124 1.141053 CTGGTCCTTAGGGGCACATAC 59.859 57.143 0.00 0.00 39.39 2.39
124 125 1.209621 GGTCCTTAGGGGCACATACA 58.790 55.000 0.00 0.00 39.39 2.29
125 126 1.774856 GGTCCTTAGGGGCACATACAT 59.225 52.381 0.00 0.00 39.39 2.29
126 127 2.487265 GGTCCTTAGGGGCACATACATG 60.487 54.545 0.00 0.00 39.39 3.21
127 128 2.438021 GTCCTTAGGGGCACATACATGA 59.562 50.000 0.00 0.00 37.14 3.07
128 129 3.073062 GTCCTTAGGGGCACATACATGAT 59.927 47.826 0.00 0.00 37.14 2.45
129 130 3.072915 TCCTTAGGGGCACATACATGATG 59.927 47.826 0.00 1.48 36.95 3.07
130 131 3.072915 CCTTAGGGGCACATACATGATGA 59.927 47.826 0.00 0.00 39.06 2.92
131 132 2.645838 AGGGGCACATACATGATGAC 57.354 50.000 0.00 0.00 39.06 3.06
132 133 2.130193 AGGGGCACATACATGATGACT 58.870 47.619 0.00 0.00 39.06 3.41
133 134 2.511218 AGGGGCACATACATGATGACTT 59.489 45.455 0.00 0.00 39.06 3.01
134 135 2.620115 GGGGCACATACATGATGACTTG 59.380 50.000 0.00 0.00 39.06 3.16
135 136 3.544684 GGGCACATACATGATGACTTGA 58.455 45.455 0.00 0.00 39.06 3.02
136 137 4.139786 GGGCACATACATGATGACTTGAT 58.860 43.478 0.00 0.00 39.06 2.57
137 138 4.023450 GGGCACATACATGATGACTTGATG 60.023 45.833 0.00 0.00 39.06 3.07
138 139 4.023450 GGCACATACATGATGACTTGATGG 60.023 45.833 0.00 0.00 39.06 3.51
139 140 4.818005 GCACATACATGATGACTTGATGGA 59.182 41.667 0.00 0.00 39.06 3.41
140 141 5.472478 GCACATACATGATGACTTGATGGAT 59.528 40.000 0.00 0.00 39.06 3.41
141 142 6.567891 GCACATACATGATGACTTGATGGATG 60.568 42.308 10.30 10.30 42.12 3.51
142 143 6.598503 ACATACATGATGACTTGATGGATGT 58.401 36.000 11.38 11.38 43.76 3.06
143 144 6.709397 ACATACATGATGACTTGATGGATGTC 59.291 38.462 11.38 0.00 44.83 3.06
144 145 5.106876 ACATGATGACTTGATGGATGTCA 57.893 39.130 0.00 0.00 41.58 3.58
145 146 5.691896 ACATGATGACTTGATGGATGTCAT 58.308 37.500 0.00 7.44 46.84 3.06
146 147 6.127101 ACATGATGACTTGATGGATGTCATT 58.873 36.000 0.00 0.00 45.15 2.57
147 148 6.039382 ACATGATGACTTGATGGATGTCATTG 59.961 38.462 0.00 7.19 45.15 2.82
148 149 5.747342 TGATGACTTGATGGATGTCATTGA 58.253 37.500 8.86 0.00 45.15 2.57
149 150 5.587443 TGATGACTTGATGGATGTCATTGAC 59.413 40.000 9.93 9.93 45.15 3.18
150 151 4.909001 TGACTTGATGGATGTCATTGACA 58.091 39.130 21.05 21.05 46.90 3.58
151 152 5.315348 TGACTTGATGGATGTCATTGACAA 58.685 37.500 22.44 7.79 45.96 3.18
152 153 5.413523 TGACTTGATGGATGTCATTGACAAG 59.586 40.000 22.44 15.28 45.96 3.16
153 154 4.703575 ACTTGATGGATGTCATTGACAAGG 59.296 41.667 22.44 8.69 45.96 3.61
154 155 4.305539 TGATGGATGTCATTGACAAGGT 57.694 40.909 22.44 7.32 45.96 3.50
155 156 4.264253 TGATGGATGTCATTGACAAGGTC 58.736 43.478 22.44 15.28 45.96 3.85
156 157 3.786368 TGGATGTCATTGACAAGGTCA 57.214 42.857 22.44 14.65 45.96 4.02
164 165 1.967319 TTGACAAGGTCAAGTGGCTC 58.033 50.000 7.66 0.00 45.88 4.70
165 166 0.108585 TGACAAGGTCAAGTGGCTCC 59.891 55.000 0.00 0.00 39.78 4.70
166 167 0.951040 GACAAGGTCAAGTGGCTCCG 60.951 60.000 0.00 0.00 32.09 4.63
167 168 1.672356 CAAGGTCAAGTGGCTCCGG 60.672 63.158 0.00 0.00 0.00 5.14
168 169 2.147387 AAGGTCAAGTGGCTCCGGT 61.147 57.895 0.00 0.00 0.00 5.28
169 170 0.834687 AAGGTCAAGTGGCTCCGGTA 60.835 55.000 0.00 0.00 0.00 4.02
170 171 1.079336 GGTCAAGTGGCTCCGGTAC 60.079 63.158 0.00 0.00 0.00 3.34
184 185 3.509388 GGTACGGGAGTTGTGACAG 57.491 57.895 0.00 0.00 43.33 3.51
185 186 0.669625 GGTACGGGAGTTGTGACAGC 60.670 60.000 0.00 0.00 43.33 4.40
186 187 1.007336 GTACGGGAGTTGTGACAGCG 61.007 60.000 0.00 0.00 43.33 5.18
187 188 2.149803 TACGGGAGTTGTGACAGCGG 62.150 60.000 0.00 0.00 43.33 5.52
188 189 3.050275 GGGAGTTGTGACAGCGGC 61.050 66.667 0.00 0.00 0.00 6.53
189 190 2.280797 GGAGTTGTGACAGCGGCA 60.281 61.111 1.45 0.00 0.00 5.69
190 191 2.320587 GGAGTTGTGACAGCGGCAG 61.321 63.158 1.45 0.00 0.00 4.85
191 192 2.281070 AGTTGTGACAGCGGCAGG 60.281 61.111 1.45 0.00 0.00 4.85
192 193 2.591715 GTTGTGACAGCGGCAGGT 60.592 61.111 1.45 0.00 0.00 4.00
193 194 2.280797 TTGTGACAGCGGCAGGTC 60.281 61.111 15.25 15.25 34.63 3.85
194 195 4.662961 TGTGACAGCGGCAGGTCG 62.663 66.667 16.48 0.00 36.83 4.79
195 196 4.357947 GTGACAGCGGCAGGTCGA 62.358 66.667 16.48 6.59 36.83 4.20
196 197 4.357947 TGACAGCGGCAGGTCGAC 62.358 66.667 7.13 7.13 36.83 4.20
202 203 4.351938 CGGCAGGTCGACGGTTCA 62.352 66.667 9.92 0.00 44.95 3.18
203 204 2.264794 GGCAGGTCGACGGTTCAT 59.735 61.111 9.92 0.00 0.00 2.57
204 205 1.375523 GGCAGGTCGACGGTTCATT 60.376 57.895 9.92 0.00 0.00 2.57
205 206 1.359459 GGCAGGTCGACGGTTCATTC 61.359 60.000 9.92 0.00 0.00 2.67
206 207 0.389948 GCAGGTCGACGGTTCATTCT 60.390 55.000 9.92 0.00 0.00 2.40
207 208 1.135199 GCAGGTCGACGGTTCATTCTA 60.135 52.381 9.92 0.00 0.00 2.10
208 209 2.673043 GCAGGTCGACGGTTCATTCTAA 60.673 50.000 9.92 0.00 0.00 2.10
209 210 2.921754 CAGGTCGACGGTTCATTCTAAC 59.078 50.000 9.92 0.00 0.00 2.34
210 211 1.916000 GGTCGACGGTTCATTCTAACG 59.084 52.381 9.92 0.00 0.00 3.18
211 212 1.916000 GTCGACGGTTCATTCTAACGG 59.084 52.381 0.00 0.00 36.19 4.44
212 213 0.643820 CGACGGTTCATTCTAACGGC 59.356 55.000 0.00 0.00 34.14 5.68
213 214 0.643820 GACGGTTCATTCTAACGGCG 59.356 55.000 4.80 4.80 34.14 6.46
214 215 0.738412 ACGGTTCATTCTAACGGCGG 60.738 55.000 13.24 0.00 34.14 6.13
215 216 1.719709 GGTTCATTCTAACGGCGGC 59.280 57.895 13.24 0.00 0.00 6.53
216 217 1.022451 GGTTCATTCTAACGGCGGCA 61.022 55.000 13.24 0.00 0.00 5.69
217 218 0.373716 GTTCATTCTAACGGCGGCAG 59.626 55.000 13.24 7.84 0.00 4.85
218 219 0.036765 TTCATTCTAACGGCGGCAGT 60.037 50.000 13.24 0.00 0.00 4.40
219 220 0.036765 TCATTCTAACGGCGGCAGTT 60.037 50.000 21.38 21.38 35.75 3.16
220 221 1.205179 TCATTCTAACGGCGGCAGTTA 59.795 47.619 21.33 21.33 33.42 2.24
221 222 2.159014 TCATTCTAACGGCGGCAGTTAT 60.159 45.455 22.52 9.51 34.10 1.89
222 223 2.389962 TTCTAACGGCGGCAGTTATT 57.610 45.000 22.52 3.90 34.10 1.40
223 224 1.647346 TCTAACGGCGGCAGTTATTG 58.353 50.000 22.52 13.92 34.10 1.90
224 225 1.066716 TCTAACGGCGGCAGTTATTGT 60.067 47.619 22.52 3.20 34.10 2.71
225 226 1.735571 CTAACGGCGGCAGTTATTGTT 59.264 47.619 22.52 12.27 34.10 2.83
226 227 0.519961 AACGGCGGCAGTTATTGTTC 59.480 50.000 16.75 0.00 0.00 3.18
227 228 1.060308 CGGCGGCAGTTATTGTTCG 59.940 57.895 10.53 0.00 0.00 3.95
228 229 1.632046 CGGCGGCAGTTATTGTTCGT 61.632 55.000 10.53 0.00 0.00 3.85
229 230 0.519961 GGCGGCAGTTATTGTTCGTT 59.480 50.000 3.07 0.00 0.00 3.85
230 231 1.602191 GCGGCAGTTATTGTTCGTTG 58.398 50.000 0.00 0.00 0.00 4.10
231 232 1.727857 GCGGCAGTTATTGTTCGTTGG 60.728 52.381 0.00 0.00 0.00 3.77
232 233 1.533731 CGGCAGTTATTGTTCGTTGGT 59.466 47.619 0.00 0.00 0.00 3.67
233 234 2.412325 CGGCAGTTATTGTTCGTTGGTC 60.412 50.000 0.00 0.00 0.00 4.02
234 235 2.095415 GGCAGTTATTGTTCGTTGGTCC 60.095 50.000 0.00 0.00 0.00 4.46
235 236 2.550606 GCAGTTATTGTTCGTTGGTCCA 59.449 45.455 0.00 0.00 0.00 4.02
236 237 3.003897 GCAGTTATTGTTCGTTGGTCCAA 59.996 43.478 0.00 0.00 0.00 3.53
237 238 4.783242 CAGTTATTGTTCGTTGGTCCAAG 58.217 43.478 3.96 0.00 0.00 3.61
238 239 4.513692 CAGTTATTGTTCGTTGGTCCAAGA 59.486 41.667 3.96 2.16 0.00 3.02
239 240 5.008217 CAGTTATTGTTCGTTGGTCCAAGAA 59.992 40.000 3.96 8.29 0.00 2.52
240 241 3.982576 ATTGTTCGTTGGTCCAAGAAC 57.017 42.857 25.05 25.05 42.19 3.01
241 242 1.670791 TGTTCGTTGGTCCAAGAACC 58.329 50.000 26.83 17.34 41.43 3.62
242 243 1.210967 TGTTCGTTGGTCCAAGAACCT 59.789 47.619 26.83 0.00 41.43 3.50
243 244 2.294979 GTTCGTTGGTCCAAGAACCTT 58.705 47.619 23.16 0.00 40.20 3.50
244 245 3.118334 TGTTCGTTGGTCCAAGAACCTTA 60.118 43.478 26.83 15.83 41.43 2.69
245 246 3.842007 TCGTTGGTCCAAGAACCTTAA 57.158 42.857 3.96 0.00 40.20 1.85
246 247 4.360951 TCGTTGGTCCAAGAACCTTAAT 57.639 40.909 3.96 0.00 40.20 1.40
247 248 4.069304 TCGTTGGTCCAAGAACCTTAATG 58.931 43.478 3.96 0.00 40.20 1.90
248 249 3.818773 CGTTGGTCCAAGAACCTTAATGT 59.181 43.478 3.96 0.00 40.20 2.71
249 250 4.277423 CGTTGGTCCAAGAACCTTAATGTT 59.723 41.667 3.96 0.00 40.20 2.71
250 251 5.221165 CGTTGGTCCAAGAACCTTAATGTTT 60.221 40.000 3.96 0.00 40.20 2.83
251 252 6.578944 GTTGGTCCAAGAACCTTAATGTTTT 58.421 36.000 3.96 0.00 40.20 2.43
252 253 6.800072 TGGTCCAAGAACCTTAATGTTTTT 57.200 33.333 0.00 0.00 40.20 1.94
278 279 8.967664 TTATGTTTGTGGTACTTTGTACTTCT 57.032 30.769 7.64 0.00 0.00 2.85
281 282 8.967664 TGTTTGTGGTACTTTGTACTTCTATT 57.032 30.769 7.64 0.00 0.00 1.73
282 283 8.832521 TGTTTGTGGTACTTTGTACTTCTATTG 58.167 33.333 7.64 0.00 0.00 1.90
283 284 9.048446 GTTTGTGGTACTTTGTACTTCTATTGA 57.952 33.333 7.64 0.00 0.00 2.57
284 285 9.616156 TTTGTGGTACTTTGTACTTCTATTGAA 57.384 29.630 7.64 0.00 0.00 2.69
285 286 9.787435 TTGTGGTACTTTGTACTTCTATTGAAT 57.213 29.630 7.64 0.00 0.00 2.57
286 287 9.787435 TGTGGTACTTTGTACTTCTATTGAATT 57.213 29.630 7.64 0.00 0.00 2.17
339 340 9.722184 AGAAAAACTTATACTCCCTCTGTAAAC 57.278 33.333 0.00 0.00 0.00 2.01
340 341 9.722184 GAAAAACTTATACTCCCTCTGTAAACT 57.278 33.333 0.00 0.00 0.00 2.66
351 352 8.862085 ACTCCCTCTGTAAACTAATATAAGAGC 58.138 37.037 0.00 0.00 0.00 4.09
352 353 8.777578 TCCCTCTGTAAACTAATATAAGAGCA 57.222 34.615 0.00 0.00 0.00 4.26
353 354 9.381038 TCCCTCTGTAAACTAATATAAGAGCAT 57.619 33.333 0.00 0.00 0.00 3.79
354 355 9.646427 CCCTCTGTAAACTAATATAAGAGCATC 57.354 37.037 0.00 0.00 0.00 3.91
355 356 9.646427 CCTCTGTAAACTAATATAAGAGCATCC 57.354 37.037 0.00 0.00 33.66 3.51
362 363 9.717942 AAACTAATATAAGAGCATCCAGATCAC 57.282 33.333 0.00 0.00 34.30 3.06
363 364 8.663209 ACTAATATAAGAGCATCCAGATCACT 57.337 34.615 0.00 0.00 34.30 3.41
364 365 9.760926 ACTAATATAAGAGCATCCAGATCACTA 57.239 33.333 0.00 0.00 34.30 2.74
370 371 9.941325 ATAAGAGCATCCAGATCACTAAAATAG 57.059 33.333 0.00 0.00 34.30 1.73
371 372 7.372260 AGAGCATCCAGATCACTAAAATAGT 57.628 36.000 0.00 0.00 35.65 2.12
372 373 7.800092 AGAGCATCCAGATCACTAAAATAGTT 58.200 34.615 0.00 0.00 33.45 2.24
373 374 7.930865 AGAGCATCCAGATCACTAAAATAGTTC 59.069 37.037 0.00 0.00 33.45 3.01
374 375 7.800092 AGCATCCAGATCACTAAAATAGTTCT 58.200 34.615 0.00 0.00 36.76 3.01
375 376 7.930865 AGCATCCAGATCACTAAAATAGTTCTC 59.069 37.037 0.00 0.00 36.76 2.87
376 377 7.930865 GCATCCAGATCACTAAAATAGTTCTCT 59.069 37.037 0.00 0.00 36.76 3.10
456 457 6.811170 CAGATAAATAAAAGCCGGCAAAAAGA 59.189 34.615 31.54 8.86 0.00 2.52
468 469 5.163652 GCCGGCAAAAAGATACATATATCCC 60.164 44.000 24.80 0.00 38.43 3.85
520 533 0.161446 CCGCACGCAATTTTCTTTGC 59.839 50.000 0.00 0.00 46.70 3.68
547 560 4.754114 GGTGCCAAAATGTAAGCATGAAAA 59.246 37.500 0.00 0.00 37.60 2.29
589 602 1.743996 GATGGCTCTCCTTGACCAAC 58.256 55.000 0.00 0.00 35.41 3.77
618 634 3.888930 CCCCAAAGAAAGTGCTTCTGTTA 59.111 43.478 0.00 0.00 44.00 2.41
635 651 0.178858 TTATGTCCCCACCCCACTCA 60.179 55.000 0.00 0.00 0.00 3.41
659 678 6.235231 ACTAATCAGACAATTCCCACGTAT 57.765 37.500 0.00 0.00 0.00 3.06
670 689 0.909623 CCCACGTATTCCTCCAACCT 59.090 55.000 0.00 0.00 0.00 3.50
676 695 3.262405 ACGTATTCCTCCAACCTAAAGCA 59.738 43.478 0.00 0.00 0.00 3.91
811 840 1.134694 GACCAAAAGATGCGCGACC 59.865 57.895 12.10 0.00 0.00 4.79
813 842 0.960364 ACCAAAAGATGCGCGACCAT 60.960 50.000 12.10 4.12 0.00 3.55
814 843 1.013596 CCAAAAGATGCGCGACCATA 58.986 50.000 12.10 0.00 0.00 2.74
817 846 3.489059 CCAAAAGATGCGCGACCATAAAT 60.489 43.478 12.10 0.00 0.00 1.40
818 847 4.104776 CAAAAGATGCGCGACCATAAATT 58.895 39.130 12.10 0.00 0.00 1.82
819 848 3.338818 AAGATGCGCGACCATAAATTG 57.661 42.857 12.10 0.00 0.00 2.32
820 849 2.560504 AGATGCGCGACCATAAATTGA 58.439 42.857 12.10 0.00 0.00 2.57
881 1000 4.087892 CCTCCCAGCCACGACCAG 62.088 72.222 0.00 0.00 0.00 4.00
1091 1252 2.681778 AGGTGCTCCTCCGGTGAG 60.682 66.667 16.33 16.33 40.58 3.51
1149 1310 0.320374 AAAATCACGAGGTCGAGGCA 59.680 50.000 6.35 0.00 43.02 4.75
1461 1634 2.430921 GAGTGCACGTCCGTCCAG 60.431 66.667 12.01 0.00 0.00 3.86
1487 1660 3.648982 CAACAGCAAGCGCGTCCA 61.649 61.111 8.43 0.00 45.49 4.02
1582 1763 1.746322 TAACGAACACCCAGCACCGA 61.746 55.000 0.00 0.00 0.00 4.69
1874 2079 4.277593 CGCCGCCCAAGCAACAAA 62.278 61.111 0.00 0.00 39.83 2.83
1876 2081 3.128375 CCGCCCAAGCAACAAAGT 58.872 55.556 0.00 0.00 39.83 2.66
1880 2085 1.606668 CGCCCAAGCAACAAAGTTCTA 59.393 47.619 0.00 0.00 39.83 2.10
2037 2249 4.296729 ACTGACGAGGGACCCCGT 62.297 66.667 22.32 22.32 41.95 5.28
2105 2317 2.747855 GACCGGAAAGCTGCCAGG 60.748 66.667 9.46 9.85 0.00 4.45
2109 2321 3.066814 GGAAAGCTGCCAGGCCAG 61.067 66.667 9.64 7.75 35.93 4.85
2134 2346 6.756074 GCATAGGAGAATATAGTCACATGAGC 59.244 42.308 0.00 0.00 0.00 4.26
2136 2348 6.737720 AGGAGAATATAGTCACATGAGCAA 57.262 37.500 0.00 0.00 0.00 3.91
2141 2353 7.978982 AGAATATAGTCACATGAGCAAAACAC 58.021 34.615 0.00 0.00 0.00 3.32
2144 2356 4.558538 AGTCACATGAGCAAAACACTTC 57.441 40.909 0.00 0.00 0.00 3.01
2146 2358 4.641989 AGTCACATGAGCAAAACACTTCTT 59.358 37.500 0.00 0.00 0.00 2.52
2147 2359 4.972440 GTCACATGAGCAAAACACTTCTTC 59.028 41.667 0.00 0.00 0.00 2.87
2148 2360 4.639755 TCACATGAGCAAAACACTTCTTCA 59.360 37.500 0.00 0.00 0.00 3.02
2149 2361 4.974275 CACATGAGCAAAACACTTCTTCAG 59.026 41.667 0.00 0.00 0.00 3.02
2150 2362 4.883585 ACATGAGCAAAACACTTCTTCAGA 59.116 37.500 0.00 0.00 0.00 3.27
2152 2364 3.879295 TGAGCAAAACACTTCTTCAGAGG 59.121 43.478 0.00 0.00 0.00 3.69
2153 2365 4.130118 GAGCAAAACACTTCTTCAGAGGA 58.870 43.478 0.00 0.00 0.00 3.71
2154 2366 4.526970 AGCAAAACACTTCTTCAGAGGAA 58.473 39.130 0.00 0.00 0.00 3.36
2208 2422 5.853936 TGATGTAAATGAATCCTAGACCCG 58.146 41.667 0.00 0.00 0.00 5.28
2216 2430 2.348411 ATCCTAGACCCGCAAATTGG 57.652 50.000 0.00 0.00 0.00 3.16
2225 2439 2.357575 CGCAAATTGGGGCCATGGA 61.358 57.895 18.40 0.00 0.00 3.41
2230 2444 1.264045 AATTGGGGCCATGGAAACCG 61.264 55.000 18.40 0.00 0.00 4.44
2259 2473 6.824196 CCTCTAATTTAGGGAAGGAAAGTCAC 59.176 42.308 4.81 0.00 0.00 3.67
2261 2475 3.412237 TTTAGGGAAGGAAAGTCACGG 57.588 47.619 0.00 0.00 0.00 4.94
2295 2509 7.119262 GTGCTAGCCTAGTGTAAAATGAAGAAA 59.881 37.037 13.29 0.00 0.00 2.52
2332 2546 4.336993 TGTTAGCAGGTTGTTTACTGTTGG 59.663 41.667 0.00 0.00 37.07 3.77
2339 2553 7.450323 AGCAGGTTGTTTACTGTTGGTATTTAT 59.550 33.333 0.00 0.00 37.07 1.40
2474 2691 6.692849 TTAGCCTTGATCATATGGACTGAT 57.307 37.500 12.36 0.00 36.07 2.90
2476 2693 6.297080 AGCCTTGATCATATGGACTGATAG 57.703 41.667 12.36 0.00 33.56 2.08
2480 2697 7.329499 CCTTGATCATATGGACTGATAGAAGG 58.671 42.308 2.13 1.88 36.95 3.46
2481 2698 7.038445 CCTTGATCATATGGACTGATAGAAGGT 60.038 40.741 2.13 0.00 37.66 3.50
2482 2699 7.237209 TGATCATATGGACTGATAGAAGGTG 57.763 40.000 2.13 0.00 33.56 4.00
2483 2700 6.784473 TGATCATATGGACTGATAGAAGGTGT 59.216 38.462 2.13 0.00 33.56 4.16
2484 2701 7.950124 TGATCATATGGACTGATAGAAGGTGTA 59.050 37.037 2.13 0.00 33.56 2.90
2485 2702 7.526142 TCATATGGACTGATAGAAGGTGTAC 57.474 40.000 2.13 0.00 0.00 2.90
2496 2713 3.589495 GAAGGTGTACCGTAGCTTCTT 57.411 47.619 13.51 0.00 44.82 2.52
2498 2715 5.064441 GAAGGTGTACCGTAGCTTCTTTA 57.936 43.478 13.51 0.00 44.82 1.85
2504 2721 5.347093 GTGTACCGTAGCTTCTTTAACTTCC 59.653 44.000 0.00 0.00 0.00 3.46
2505 2722 3.935315 ACCGTAGCTTCTTTAACTTCCC 58.065 45.455 0.00 0.00 0.00 3.97
2517 2734 9.720769 CTTCTTTAACTTCCCTTCTGTATGTTA 57.279 33.333 0.00 0.00 0.00 2.41
2521 2738 8.660295 TTAACTTCCCTTCTGTATGTTAGAGA 57.340 34.615 0.00 0.00 0.00 3.10
2522 2739 6.783708 ACTTCCCTTCTGTATGTTAGAGAG 57.216 41.667 0.00 0.00 29.15 3.20
2524 2741 6.726764 ACTTCCCTTCTGTATGTTAGAGAGTT 59.273 38.462 0.00 0.00 29.15 3.01
2526 2743 5.657302 TCCCTTCTGTATGTTAGAGAGTTCC 59.343 44.000 0.00 0.00 29.15 3.62
2527 2744 5.422331 CCCTTCTGTATGTTAGAGAGTTCCA 59.578 44.000 0.00 0.00 29.15 3.53
2533 2756 2.551270 TGTTAGAGAGTTCCAGGCCAT 58.449 47.619 5.01 0.00 0.00 4.40
2542 2765 2.444696 CCAGGCCATGGGGTGAAA 59.555 61.111 15.13 0.00 46.36 2.69
2544 2767 0.261402 CCAGGCCATGGGGTGAAATA 59.739 55.000 15.13 0.00 46.36 1.40
2558 2781 0.663153 GAAATATGGAGCCCACACGC 59.337 55.000 0.00 0.00 35.80 5.34
2570 2793 0.459899 CCACACGCTCTGTATGGCTA 59.540 55.000 0.00 0.00 38.57 3.93
2575 2798 1.001268 ACGCTCTGTATGGCTATGTCG 60.001 52.381 0.00 0.00 0.00 4.35
2602 2825 1.373059 GCATAGAGCCCCACTAGCC 59.627 63.158 0.00 0.00 37.23 3.93
2615 2838 0.610687 ACTAGCCACCTCTCTGCAAC 59.389 55.000 0.00 0.00 0.00 4.17
2635 2858 4.794311 ACATATGATGTTGGATGACCCA 57.206 40.909 10.38 0.00 41.63 4.51
2647 2873 4.536627 GGATGACCCAAAAACCGGAGGA 62.537 54.545 9.46 0.00 43.44 3.71
2685 2913 1.884579 CTCAACATAGGCATCATGGGC 59.115 52.381 0.00 0.00 0.00 5.36
2688 2916 1.696063 ACATAGGCATCATGGGCAAC 58.304 50.000 11.50 0.00 35.46 4.17
2689 2917 1.216175 ACATAGGCATCATGGGCAACT 59.784 47.619 11.50 4.18 35.46 3.16
2702 2930 1.539280 GGGCAACTATCTCTTCTCCGC 60.539 57.143 0.00 0.00 0.00 5.54
2706 2934 0.752009 ACTATCTCTTCTCCGCGGCA 60.752 55.000 23.51 6.36 0.00 5.69
2722 2950 2.874457 GCGGCAGAAGGGAGAAAACTAA 60.874 50.000 0.00 0.00 0.00 2.24
2724 2952 3.557264 CGGCAGAAGGGAGAAAACTAACT 60.557 47.826 0.00 0.00 0.00 2.24
2725 2953 4.004314 GGCAGAAGGGAGAAAACTAACTC 58.996 47.826 0.00 0.00 0.00 3.01
2746 2974 5.072329 ACTCTTCTCAAAGGGTTGATCTCAA 59.928 40.000 0.00 0.00 44.01 3.02
2758 2986 2.789213 TGATCTCAACGGAATTTGCCA 58.211 42.857 0.00 0.00 0.00 4.92
2760 2988 3.057596 TGATCTCAACGGAATTTGCCAAC 60.058 43.478 0.00 0.00 0.00 3.77
2771 2999 2.045561 TTTGCCAACAGACGAAGGAA 57.954 45.000 0.00 0.00 0.00 3.36
2772 3000 2.045561 TTGCCAACAGACGAAGGAAA 57.954 45.000 0.00 0.00 0.00 3.13
2777 3005 3.262420 CCAACAGACGAAGGAAATCGAT 58.738 45.455 3.47 0.00 45.48 3.59
2807 3035 2.229792 GTTCTCAACACCAAGGCATCA 58.770 47.619 0.00 0.00 0.00 3.07
2810 3038 2.040145 TCTCAACACCAAGGCATCATGA 59.960 45.455 0.00 0.00 0.00 3.07
2811 3039 2.821378 CTCAACACCAAGGCATCATGAA 59.179 45.455 0.00 0.00 0.00 2.57
2812 3040 3.229293 TCAACACCAAGGCATCATGAAA 58.771 40.909 0.00 0.00 0.00 2.69
2820 3048 5.012354 ACCAAGGCATCATGAAAAACATCTT 59.988 36.000 0.00 0.00 37.07 2.40
2856 3084 8.777413 CATCACTATTATTTCCATCGACAACAT 58.223 33.333 0.00 0.00 0.00 2.71
2862 3090 7.931578 TTATTTCCATCGACAACATTTACCT 57.068 32.000 0.00 0.00 0.00 3.08
2863 3091 6.834168 ATTTCCATCGACAACATTTACCTT 57.166 33.333 0.00 0.00 0.00 3.50
2880 3108 1.472480 CCTTGCCCCGTTTATGAACAG 59.528 52.381 0.95 0.00 35.44 3.16
2883 3111 3.420300 TGCCCCGTTTATGAACAGTTA 57.580 42.857 0.95 0.00 35.44 2.24
2912 3140 4.049546 TCGGTTATGGTTATCACTTCCG 57.950 45.455 0.00 0.00 36.79 4.30
2926 3154 4.006989 TCACTTCCGGGTGTTAATTGATG 58.993 43.478 0.00 0.00 38.28 3.07
3047 3276 7.867305 TGTAAGTAAAACACCATGTTCTTGA 57.133 32.000 0.00 0.00 40.14 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.162698 GAAACCCTAAACTCGGCACC 58.837 55.000 0.00 0.00 0.00 5.01
1 2 2.074576 GAGAAACCCTAAACTCGGCAC 58.925 52.381 0.00 0.00 0.00 5.01
3 4 1.356938 CGAGAAACCCTAAACTCGGC 58.643 55.000 0.00 0.00 45.22 5.54
6 7 3.240884 GTCGACGAGAAACCCTAAACTC 58.759 50.000 0.00 0.00 0.00 3.01
7 8 2.351157 CGTCGACGAGAAACCCTAAACT 60.351 50.000 33.35 0.00 43.02 2.66
9 10 1.666888 GCGTCGACGAGAAACCCTAAA 60.667 52.381 39.74 0.00 43.02 1.85
10 11 0.109597 GCGTCGACGAGAAACCCTAA 60.110 55.000 39.74 0.00 43.02 2.69
11 12 1.503542 GCGTCGACGAGAAACCCTA 59.496 57.895 39.74 0.00 43.02 3.53
12 13 2.257676 GCGTCGACGAGAAACCCT 59.742 61.111 39.74 0.00 43.02 4.34
13 14 3.170585 CGCGTCGACGAGAAACCC 61.171 66.667 39.74 19.49 41.67 4.11
14 15 2.127118 TCGCGTCGACGAGAAACC 60.127 61.111 39.74 20.21 44.59 3.27
28 29 2.287915 AGACACATAATTTCGCCATCGC 59.712 45.455 0.00 0.00 35.26 4.58
29 30 3.303329 CCAGACACATAATTTCGCCATCG 60.303 47.826 0.00 0.00 0.00 3.84
30 31 3.627577 ACCAGACACATAATTTCGCCATC 59.372 43.478 0.00 0.00 0.00 3.51
31 32 3.620488 ACCAGACACATAATTTCGCCAT 58.380 40.909 0.00 0.00 0.00 4.40
32 33 3.066291 ACCAGACACATAATTTCGCCA 57.934 42.857 0.00 0.00 0.00 5.69
33 34 3.689649 AGAACCAGACACATAATTTCGCC 59.310 43.478 0.00 0.00 0.00 5.54
34 35 4.946784 AGAACCAGACACATAATTTCGC 57.053 40.909 0.00 0.00 0.00 4.70
35 36 8.251750 TCTAAAGAACCAGACACATAATTTCG 57.748 34.615 0.00 0.00 0.00 3.46
37 38 8.883731 CGATCTAAAGAACCAGACACATAATTT 58.116 33.333 0.00 0.00 0.00 1.82
38 39 8.258007 TCGATCTAAAGAACCAGACACATAATT 58.742 33.333 0.00 0.00 0.00 1.40
39 40 7.782049 TCGATCTAAAGAACCAGACACATAAT 58.218 34.615 0.00 0.00 0.00 1.28
40 41 7.165460 TCGATCTAAAGAACCAGACACATAA 57.835 36.000 0.00 0.00 0.00 1.90
41 42 6.769134 TCGATCTAAAGAACCAGACACATA 57.231 37.500 0.00 0.00 0.00 2.29
42 43 5.661056 TCGATCTAAAGAACCAGACACAT 57.339 39.130 0.00 0.00 0.00 3.21
43 44 5.661056 ATCGATCTAAAGAACCAGACACA 57.339 39.130 0.00 0.00 0.00 3.72
44 45 6.100004 TGAATCGATCTAAAGAACCAGACAC 58.900 40.000 0.00 0.00 0.00 3.67
45 46 6.280855 TGAATCGATCTAAAGAACCAGACA 57.719 37.500 0.00 0.00 0.00 3.41
46 47 7.332182 ACTTTGAATCGATCTAAAGAACCAGAC 59.668 37.037 27.42 0.00 33.79 3.51
47 48 7.386851 ACTTTGAATCGATCTAAAGAACCAGA 58.613 34.615 27.42 1.77 33.79 3.86
48 49 7.602517 ACTTTGAATCGATCTAAAGAACCAG 57.397 36.000 27.42 11.55 33.79 4.00
49 50 7.979444 AACTTTGAATCGATCTAAAGAACCA 57.021 32.000 27.42 5.01 33.79 3.67
50 51 8.504005 TGAAACTTTGAATCGATCTAAAGAACC 58.496 33.333 27.42 18.95 33.79 3.62
51 52 9.878599 TTGAAACTTTGAATCGATCTAAAGAAC 57.121 29.630 27.42 20.19 33.79 3.01
52 53 9.878599 GTTGAAACTTTGAATCGATCTAAAGAA 57.121 29.630 27.42 15.69 33.79 2.52
53 54 8.221100 CGTTGAAACTTTGAATCGATCTAAAGA 58.779 33.333 27.42 12.18 33.79 2.52
54 55 7.478667 CCGTTGAAACTTTGAATCGATCTAAAG 59.521 37.037 22.62 22.62 34.79 1.85
55 56 7.295201 CCGTTGAAACTTTGAATCGATCTAAA 58.705 34.615 0.00 2.67 0.00 1.85
56 57 6.619874 GCCGTTGAAACTTTGAATCGATCTAA 60.620 38.462 0.00 0.00 0.00 2.10
57 58 5.163893 GCCGTTGAAACTTTGAATCGATCTA 60.164 40.000 0.00 0.00 0.00 1.98
58 59 4.378459 GCCGTTGAAACTTTGAATCGATCT 60.378 41.667 0.00 0.00 0.00 2.75
59 60 3.846335 GCCGTTGAAACTTTGAATCGATC 59.154 43.478 0.00 0.00 0.00 3.69
60 61 3.666902 CGCCGTTGAAACTTTGAATCGAT 60.667 43.478 0.00 0.00 0.00 3.59
61 62 2.349060 CGCCGTTGAAACTTTGAATCGA 60.349 45.455 0.00 0.00 0.00 3.59
62 63 1.969256 CGCCGTTGAAACTTTGAATCG 59.031 47.619 0.00 0.00 0.00 3.34
63 64 3.226347 CTCGCCGTTGAAACTTTGAATC 58.774 45.455 0.00 0.00 0.00 2.52
64 65 2.031157 CCTCGCCGTTGAAACTTTGAAT 60.031 45.455 0.00 0.00 0.00 2.57
65 66 1.332375 CCTCGCCGTTGAAACTTTGAA 59.668 47.619 0.00 0.00 0.00 2.69
66 67 0.941542 CCTCGCCGTTGAAACTTTGA 59.058 50.000 0.00 0.00 0.00 2.69
67 68 0.941542 TCCTCGCCGTTGAAACTTTG 59.058 50.000 0.00 0.00 0.00 2.77
68 69 1.892209 ATCCTCGCCGTTGAAACTTT 58.108 45.000 0.00 0.00 0.00 2.66
69 70 2.740447 GTTATCCTCGCCGTTGAAACTT 59.260 45.455 0.00 0.00 0.00 2.66
70 71 2.344025 GTTATCCTCGCCGTTGAAACT 58.656 47.619 0.00 0.00 0.00 2.66
71 72 1.060122 CGTTATCCTCGCCGTTGAAAC 59.940 52.381 0.00 0.00 0.00 2.78
72 73 1.067706 TCGTTATCCTCGCCGTTGAAA 60.068 47.619 0.00 0.00 0.00 2.69
73 74 0.527113 TCGTTATCCTCGCCGTTGAA 59.473 50.000 0.00 0.00 0.00 2.69
74 75 0.179156 GTCGTTATCCTCGCCGTTGA 60.179 55.000 0.00 0.00 0.00 3.18
75 76 0.179145 AGTCGTTATCCTCGCCGTTG 60.179 55.000 0.00 0.00 0.00 4.10
76 77 0.100146 GAGTCGTTATCCTCGCCGTT 59.900 55.000 0.00 0.00 0.00 4.44
77 78 1.722636 GGAGTCGTTATCCTCGCCGT 61.723 60.000 0.00 0.00 33.77 5.68
78 79 1.008767 GGAGTCGTTATCCTCGCCG 60.009 63.158 0.00 0.00 33.77 6.46
79 80 0.458669 TTGGAGTCGTTATCCTCGCC 59.541 55.000 5.23 0.00 37.74 5.54
80 81 1.536284 CCTTGGAGTCGTTATCCTCGC 60.536 57.143 5.23 0.00 37.74 5.03
81 82 1.536284 GCCTTGGAGTCGTTATCCTCG 60.536 57.143 5.23 0.00 37.74 4.63
82 83 1.480954 TGCCTTGGAGTCGTTATCCTC 59.519 52.381 5.23 0.00 37.74 3.71
83 84 1.207329 GTGCCTTGGAGTCGTTATCCT 59.793 52.381 5.23 0.00 37.74 3.24
84 85 1.207329 AGTGCCTTGGAGTCGTTATCC 59.793 52.381 0.00 0.00 37.35 2.59
85 86 2.271800 CAGTGCCTTGGAGTCGTTATC 58.728 52.381 0.00 0.00 0.00 1.75
86 87 1.066143 CCAGTGCCTTGGAGTCGTTAT 60.066 52.381 0.00 0.00 40.87 1.89
87 88 0.320374 CCAGTGCCTTGGAGTCGTTA 59.680 55.000 0.00 0.00 40.87 3.18
88 89 1.071471 CCAGTGCCTTGGAGTCGTT 59.929 57.895 0.00 0.00 40.87 3.85
89 90 2.100879 GACCAGTGCCTTGGAGTCGT 62.101 60.000 10.30 0.00 40.87 4.34
90 91 1.374758 GACCAGTGCCTTGGAGTCG 60.375 63.158 10.30 0.00 40.87 4.18
91 92 1.003233 GGACCAGTGCCTTGGAGTC 60.003 63.158 10.30 0.00 40.87 3.36
92 93 1.062488 AAGGACCAGTGCCTTGGAGT 61.062 55.000 10.30 0.00 43.84 3.85
93 94 0.984230 TAAGGACCAGTGCCTTGGAG 59.016 55.000 11.21 0.00 45.05 3.86
94 95 0.984230 CTAAGGACCAGTGCCTTGGA 59.016 55.000 11.21 0.00 44.15 3.53
95 96 0.035056 CCTAAGGACCAGTGCCTTGG 60.035 60.000 11.21 8.59 45.05 3.61
96 97 0.035056 CCCTAAGGACCAGTGCCTTG 60.035 60.000 11.21 3.36 45.05 3.61
97 98 1.208165 CCCCTAAGGACCAGTGCCTT 61.208 60.000 7.16 7.16 46.90 4.35
98 99 1.616628 CCCCTAAGGACCAGTGCCT 60.617 63.158 0.00 0.00 38.24 4.75
99 100 2.998949 CCCCTAAGGACCAGTGCC 59.001 66.667 0.00 0.00 38.24 5.01
100 101 2.272471 GCCCCTAAGGACCAGTGC 59.728 66.667 0.00 0.00 38.24 4.40
101 102 1.299976 GTGCCCCTAAGGACCAGTG 59.700 63.158 0.00 0.00 38.24 3.66
102 103 0.550147 ATGTGCCCCTAAGGACCAGT 60.550 55.000 0.00 0.00 38.24 4.00
103 104 1.141053 GTATGTGCCCCTAAGGACCAG 59.859 57.143 0.00 0.00 38.24 4.00
104 105 1.209621 GTATGTGCCCCTAAGGACCA 58.790 55.000 0.00 0.00 38.24 4.02
105 106 1.209621 TGTATGTGCCCCTAAGGACC 58.790 55.000 0.00 0.00 38.24 4.46
106 107 2.438021 TCATGTATGTGCCCCTAAGGAC 59.562 50.000 0.00 0.00 38.24 3.85
107 108 2.770447 TCATGTATGTGCCCCTAAGGA 58.230 47.619 0.00 0.00 38.24 3.36
108 109 3.072915 TCATCATGTATGTGCCCCTAAGG 59.927 47.826 0.00 0.00 36.89 2.69
109 110 4.067896 GTCATCATGTATGTGCCCCTAAG 58.932 47.826 0.00 0.00 36.89 2.18
110 111 3.716353 AGTCATCATGTATGTGCCCCTAA 59.284 43.478 0.00 0.00 36.89 2.69
111 112 3.317406 AGTCATCATGTATGTGCCCCTA 58.683 45.455 0.00 0.00 36.89 3.53
112 113 2.130193 AGTCATCATGTATGTGCCCCT 58.870 47.619 0.00 0.00 36.89 4.79
113 114 2.620115 CAAGTCATCATGTATGTGCCCC 59.380 50.000 0.00 0.00 36.89 5.80
114 115 3.544684 TCAAGTCATCATGTATGTGCCC 58.455 45.455 0.00 0.00 36.89 5.36
115 116 4.023450 CCATCAAGTCATCATGTATGTGCC 60.023 45.833 0.00 0.00 36.89 5.01
116 117 4.818005 TCCATCAAGTCATCATGTATGTGC 59.182 41.667 0.00 0.00 36.89 4.57
117 118 6.485648 ACATCCATCAAGTCATCATGTATGTG 59.514 38.462 0.00 0.00 36.89 3.21
118 119 6.598503 ACATCCATCAAGTCATCATGTATGT 58.401 36.000 0.00 0.00 36.89 2.29
119 120 6.708949 TGACATCCATCAAGTCATCATGTATG 59.291 38.462 0.00 0.00 37.36 2.39
120 121 6.834107 TGACATCCATCAAGTCATCATGTAT 58.166 36.000 0.00 0.00 37.36 2.29
121 122 6.237887 TGACATCCATCAAGTCATCATGTA 57.762 37.500 0.00 0.00 37.36 2.29
122 123 5.106876 TGACATCCATCAAGTCATCATGT 57.893 39.130 0.00 0.00 37.36 3.21
128 129 4.909001 TGTCAATGACATCCATCAAGTCA 58.091 39.130 12.63 0.00 45.26 3.41
129 130 5.163683 CCTTGTCAATGACATCCATCAAGTC 60.164 44.000 17.48 0.00 42.40 3.01
130 131 4.703575 CCTTGTCAATGACATCCATCAAGT 59.296 41.667 17.48 0.00 42.40 3.16
131 132 4.703575 ACCTTGTCAATGACATCCATCAAG 59.296 41.667 17.48 9.23 42.40 3.02
132 133 4.665451 ACCTTGTCAATGACATCCATCAA 58.335 39.130 17.48 0.00 42.40 2.57
133 134 4.263418 TGACCTTGTCAATGACATCCATCA 60.263 41.667 17.48 14.63 42.40 3.07
134 135 4.264253 TGACCTTGTCAATGACATCCATC 58.736 43.478 17.48 12.43 42.40 3.51
135 136 4.305539 TGACCTTGTCAATGACATCCAT 57.694 40.909 17.48 3.41 42.40 3.41
136 137 3.786368 TGACCTTGTCAATGACATCCA 57.214 42.857 17.48 9.63 42.40 3.41
146 147 0.108585 GGAGCCACTTGACCTTGTCA 59.891 55.000 0.00 0.00 41.09 3.58
147 148 0.951040 CGGAGCCACTTGACCTTGTC 60.951 60.000 0.00 0.00 0.00 3.18
148 149 1.071471 CGGAGCCACTTGACCTTGT 59.929 57.895 0.00 0.00 0.00 3.16
149 150 1.672356 CCGGAGCCACTTGACCTTG 60.672 63.158 0.00 0.00 0.00 3.61
150 151 0.834687 TACCGGAGCCACTTGACCTT 60.835 55.000 9.46 0.00 0.00 3.50
151 152 1.229082 TACCGGAGCCACTTGACCT 60.229 57.895 9.46 0.00 0.00 3.85
152 153 1.079336 GTACCGGAGCCACTTGACC 60.079 63.158 9.46 0.00 0.00 4.02
153 154 1.445582 CGTACCGGAGCCACTTGAC 60.446 63.158 9.46 0.00 0.00 3.18
154 155 2.967397 CGTACCGGAGCCACTTGA 59.033 61.111 9.46 0.00 0.00 3.02
165 166 0.388134 CTGTCACAACTCCCGTACCG 60.388 60.000 0.00 0.00 0.00 4.02
166 167 0.669625 GCTGTCACAACTCCCGTACC 60.670 60.000 0.00 0.00 0.00 3.34
167 168 1.007336 CGCTGTCACAACTCCCGTAC 61.007 60.000 0.00 0.00 0.00 3.67
168 169 1.287815 CGCTGTCACAACTCCCGTA 59.712 57.895 0.00 0.00 0.00 4.02
169 170 2.029073 CGCTGTCACAACTCCCGT 59.971 61.111 0.00 0.00 0.00 5.28
170 171 2.738521 CCGCTGTCACAACTCCCG 60.739 66.667 0.00 0.00 0.00 5.14
171 172 3.050275 GCCGCTGTCACAACTCCC 61.050 66.667 0.00 0.00 0.00 4.30
172 173 2.280797 TGCCGCTGTCACAACTCC 60.281 61.111 0.00 0.00 0.00 3.85
173 174 2.320587 CCTGCCGCTGTCACAACTC 61.321 63.158 0.00 0.00 0.00 3.01
174 175 2.281070 CCTGCCGCTGTCACAACT 60.281 61.111 0.00 0.00 0.00 3.16
175 176 2.591715 ACCTGCCGCTGTCACAAC 60.592 61.111 0.00 0.00 0.00 3.32
176 177 2.280797 GACCTGCCGCTGTCACAA 60.281 61.111 8.26 0.00 0.00 3.33
177 178 4.662961 CGACCTGCCGCTGTCACA 62.663 66.667 12.21 0.00 0.00 3.58
178 179 4.357947 TCGACCTGCCGCTGTCAC 62.358 66.667 12.21 0.00 0.00 3.67
179 180 4.357947 GTCGACCTGCCGCTGTCA 62.358 66.667 3.51 0.49 0.00 3.58
185 186 3.642778 ATGAACCGTCGACCTGCCG 62.643 63.158 10.58 0.00 0.00 5.69
186 187 1.359459 GAATGAACCGTCGACCTGCC 61.359 60.000 10.58 0.00 0.00 4.85
187 188 0.389948 AGAATGAACCGTCGACCTGC 60.390 55.000 10.58 0.00 0.00 4.85
188 189 2.921754 GTTAGAATGAACCGTCGACCTG 59.078 50.000 10.58 3.94 0.00 4.00
189 190 2.415090 CGTTAGAATGAACCGTCGACCT 60.415 50.000 10.58 0.78 0.00 3.85
190 191 1.916000 CGTTAGAATGAACCGTCGACC 59.084 52.381 10.58 0.00 0.00 4.79
191 192 1.916000 CCGTTAGAATGAACCGTCGAC 59.084 52.381 5.18 5.18 0.00 4.20
192 193 1.733389 GCCGTTAGAATGAACCGTCGA 60.733 52.381 0.00 0.00 0.00 4.20
193 194 0.643820 GCCGTTAGAATGAACCGTCG 59.356 55.000 0.00 0.00 0.00 5.12
194 195 0.643820 CGCCGTTAGAATGAACCGTC 59.356 55.000 0.00 0.00 0.00 4.79
195 196 0.738412 CCGCCGTTAGAATGAACCGT 60.738 55.000 0.00 0.00 0.00 4.83
196 197 2.003672 CCGCCGTTAGAATGAACCG 58.996 57.895 0.00 0.00 0.00 4.44
197 198 1.022451 TGCCGCCGTTAGAATGAACC 61.022 55.000 0.00 0.00 0.00 3.62
198 199 0.373716 CTGCCGCCGTTAGAATGAAC 59.626 55.000 0.00 0.00 0.00 3.18
199 200 0.036765 ACTGCCGCCGTTAGAATGAA 60.037 50.000 0.00 0.00 0.00 2.57
200 201 0.036765 AACTGCCGCCGTTAGAATGA 60.037 50.000 0.00 0.00 0.00 2.57
201 202 1.647346 TAACTGCCGCCGTTAGAATG 58.353 50.000 3.50 0.00 0.00 2.67
202 203 2.612212 CAATAACTGCCGCCGTTAGAAT 59.388 45.455 12.19 0.68 31.12 2.40
203 204 2.004017 CAATAACTGCCGCCGTTAGAA 58.996 47.619 12.19 0.00 31.12 2.10
204 205 1.066716 ACAATAACTGCCGCCGTTAGA 60.067 47.619 12.19 0.00 31.12 2.10
205 206 1.365699 ACAATAACTGCCGCCGTTAG 58.634 50.000 12.19 3.74 31.12 2.34
206 207 1.733360 GAACAATAACTGCCGCCGTTA 59.267 47.619 9.48 9.48 0.00 3.18
207 208 0.519961 GAACAATAACTGCCGCCGTT 59.480 50.000 5.47 5.47 0.00 4.44
208 209 1.632046 CGAACAATAACTGCCGCCGT 61.632 55.000 0.00 0.00 0.00 5.68
209 210 1.060308 CGAACAATAACTGCCGCCG 59.940 57.895 0.00 0.00 0.00 6.46
210 211 0.519961 AACGAACAATAACTGCCGCC 59.480 50.000 0.00 0.00 0.00 6.13
211 212 1.602191 CAACGAACAATAACTGCCGC 58.398 50.000 0.00 0.00 0.00 6.53
212 213 1.533731 ACCAACGAACAATAACTGCCG 59.466 47.619 0.00 0.00 0.00 5.69
213 214 2.095415 GGACCAACGAACAATAACTGCC 60.095 50.000 0.00 0.00 0.00 4.85
214 215 2.550606 TGGACCAACGAACAATAACTGC 59.449 45.455 0.00 0.00 0.00 4.40
215 216 4.513692 TCTTGGACCAACGAACAATAACTG 59.486 41.667 1.69 0.00 0.00 3.16
216 217 4.710324 TCTTGGACCAACGAACAATAACT 58.290 39.130 1.69 0.00 0.00 2.24
217 218 5.209977 GTTCTTGGACCAACGAACAATAAC 58.790 41.667 27.24 12.49 34.69 1.89
218 219 4.276431 GGTTCTTGGACCAACGAACAATAA 59.724 41.667 29.98 9.14 39.57 1.40
219 220 3.816523 GGTTCTTGGACCAACGAACAATA 59.183 43.478 29.98 9.63 39.57 1.90
220 221 2.621526 GGTTCTTGGACCAACGAACAAT 59.378 45.455 29.98 0.00 39.57 2.71
221 222 2.018515 GGTTCTTGGACCAACGAACAA 58.981 47.619 29.98 10.63 39.57 2.83
222 223 1.210967 AGGTTCTTGGACCAACGAACA 59.789 47.619 29.98 10.60 42.35 3.18
223 224 1.963172 AGGTTCTTGGACCAACGAAC 58.037 50.000 25.75 25.75 42.35 3.95
224 225 2.721425 AAGGTTCTTGGACCAACGAA 57.279 45.000 1.69 8.69 42.35 3.85
225 226 3.842007 TTAAGGTTCTTGGACCAACGA 57.158 42.857 1.69 2.60 42.35 3.85
226 227 3.818773 ACATTAAGGTTCTTGGACCAACG 59.181 43.478 1.69 0.03 42.35 4.10
227 228 5.784578 AACATTAAGGTTCTTGGACCAAC 57.215 39.130 1.69 0.00 42.35 3.77
228 229 6.800072 AAAACATTAAGGTTCTTGGACCAA 57.200 33.333 5.89 6.76 42.35 3.67
229 230 6.800072 AAAAACATTAAGGTTCTTGGACCA 57.200 33.333 5.89 0.00 42.35 4.02
252 253 9.398538 AGAAGTACAAAGTACCACAAACATAAA 57.601 29.630 3.85 0.00 0.00 1.40
253 254 8.967664 AGAAGTACAAAGTACCACAAACATAA 57.032 30.769 3.85 0.00 0.00 1.90
255 256 9.569122 AATAGAAGTACAAAGTACCACAAACAT 57.431 29.630 3.85 0.00 0.00 2.71
256 257 8.832521 CAATAGAAGTACAAAGTACCACAAACA 58.167 33.333 3.85 0.00 0.00 2.83
257 258 9.048446 TCAATAGAAGTACAAAGTACCACAAAC 57.952 33.333 3.85 0.00 0.00 2.93
258 259 9.616156 TTCAATAGAAGTACAAAGTACCACAAA 57.384 29.630 3.85 0.00 0.00 2.83
259 260 9.787435 ATTCAATAGAAGTACAAAGTACCACAA 57.213 29.630 3.85 0.00 37.14 3.33
260 261 9.787435 AATTCAATAGAAGTACAAAGTACCACA 57.213 29.630 3.85 0.00 37.14 4.17
313 314 9.722184 GTTTACAGAGGGAGTATAAGTTTTTCT 57.278 33.333 0.00 0.00 0.00 2.52
314 315 9.722184 AGTTTACAGAGGGAGTATAAGTTTTTC 57.278 33.333 0.00 0.00 0.00 2.29
325 326 8.862085 GCTCTTATATTAGTTTACAGAGGGAGT 58.138 37.037 0.00 0.00 0.00 3.85
326 327 8.861086 TGCTCTTATATTAGTTTACAGAGGGAG 58.139 37.037 0.00 0.00 0.00 4.30
327 328 8.777578 TGCTCTTATATTAGTTTACAGAGGGA 57.222 34.615 0.00 0.00 0.00 4.20
328 329 9.646427 GATGCTCTTATATTAGTTTACAGAGGG 57.354 37.037 0.00 0.00 0.00 4.30
329 330 9.646427 GGATGCTCTTATATTAGTTTACAGAGG 57.354 37.037 0.00 0.00 0.00 3.69
336 337 9.717942 GTGATCTGGATGCTCTTATATTAGTTT 57.282 33.333 0.00 0.00 0.00 2.66
337 338 9.099071 AGTGATCTGGATGCTCTTATATTAGTT 57.901 33.333 0.00 0.00 0.00 2.24
338 339 8.663209 AGTGATCTGGATGCTCTTATATTAGT 57.337 34.615 0.00 0.00 0.00 2.24
344 345 9.941325 CTATTTTAGTGATCTGGATGCTCTTAT 57.059 33.333 0.00 0.00 0.00 1.73
345 346 8.928448 ACTATTTTAGTGATCTGGATGCTCTTA 58.072 33.333 0.00 0.00 37.69 2.10
346 347 7.800092 ACTATTTTAGTGATCTGGATGCTCTT 58.200 34.615 0.00 0.00 37.69 2.85
347 348 7.372260 ACTATTTTAGTGATCTGGATGCTCT 57.628 36.000 0.00 0.00 37.69 4.09
348 349 7.930865 AGAACTATTTTAGTGATCTGGATGCTC 59.069 37.037 0.00 0.00 39.39 4.26
349 350 7.800092 AGAACTATTTTAGTGATCTGGATGCT 58.200 34.615 0.00 0.00 39.39 3.79
350 351 7.930865 AGAGAACTATTTTAGTGATCTGGATGC 59.069 37.037 0.00 0.00 39.39 3.91
393 394 7.782897 TCTCTTATGTACTCCATCCATAAGG 57.217 40.000 14.99 8.66 44.03 2.69
395 396 9.832445 GTTTTCTCTTATGTACTCCATCCATAA 57.168 33.333 0.00 0.00 34.86 1.90
396 397 8.988060 TGTTTTCTCTTATGTACTCCATCCATA 58.012 33.333 0.00 0.00 34.86 2.74
397 398 7.861629 TGTTTTCTCTTATGTACTCCATCCAT 58.138 34.615 0.00 0.00 34.86 3.41
398 399 7.252612 TGTTTTCTCTTATGTACTCCATCCA 57.747 36.000 0.00 0.00 34.86 3.41
399 400 7.987458 TGATGTTTTCTCTTATGTACTCCATCC 59.013 37.037 0.00 0.00 34.86 3.51
400 401 8.821894 GTGATGTTTTCTCTTATGTACTCCATC 58.178 37.037 0.00 0.00 34.86 3.51
401 402 7.492669 CGTGATGTTTTCTCTTATGTACTCCAT 59.507 37.037 0.00 0.00 37.58 3.41
402 403 6.811665 CGTGATGTTTTCTCTTATGTACTCCA 59.188 38.462 0.00 0.00 0.00 3.86
403 404 7.009357 GTCGTGATGTTTTCTCTTATGTACTCC 59.991 40.741 0.00 0.00 0.00 3.85
404 405 7.755822 AGTCGTGATGTTTTCTCTTATGTACTC 59.244 37.037 0.00 0.00 0.00 2.59
405 406 7.603651 AGTCGTGATGTTTTCTCTTATGTACT 58.396 34.615 0.00 0.00 0.00 2.73
406 407 7.541091 TGAGTCGTGATGTTTTCTCTTATGTAC 59.459 37.037 0.00 0.00 0.00 2.90
407 408 7.599171 TGAGTCGTGATGTTTTCTCTTATGTA 58.401 34.615 0.00 0.00 0.00 2.29
408 409 6.455647 TGAGTCGTGATGTTTTCTCTTATGT 58.544 36.000 0.00 0.00 0.00 2.29
409 410 6.808704 TCTGAGTCGTGATGTTTTCTCTTATG 59.191 38.462 0.00 0.00 0.00 1.90
410 411 6.925211 TCTGAGTCGTGATGTTTTCTCTTAT 58.075 36.000 0.00 0.00 0.00 1.73
411 412 6.327279 TCTGAGTCGTGATGTTTTCTCTTA 57.673 37.500 0.00 0.00 0.00 2.10
412 413 5.201713 TCTGAGTCGTGATGTTTTCTCTT 57.798 39.130 0.00 0.00 0.00 2.85
413 414 4.855715 TCTGAGTCGTGATGTTTTCTCT 57.144 40.909 0.00 0.00 0.00 3.10
414 415 7.582435 TTTATCTGAGTCGTGATGTTTTCTC 57.418 36.000 8.24 0.00 0.00 2.87
415 416 9.653287 TTATTTATCTGAGTCGTGATGTTTTCT 57.347 29.630 8.24 0.00 0.00 2.52
498 511 3.171911 GAAAATTGCGTGCGGCCG 61.172 61.111 24.05 24.05 42.61 6.13
520 533 1.066929 GCTTACATTTTGGCACCCCAG 60.067 52.381 0.00 0.00 43.37 4.45
547 560 1.270550 GTGCCAACAACTAGCAATGCT 59.729 47.619 13.92 13.92 43.41 3.79
589 602 0.400594 ACTTTCTTTGGGGTCTCCGG 59.599 55.000 0.00 0.00 38.76 5.14
618 634 1.465188 TTGAGTGGGGTGGGGACAT 60.465 57.895 0.00 0.00 46.14 3.06
635 651 4.906618 ACGTGGGAATTGTCTGATTAGTT 58.093 39.130 0.00 0.00 0.00 2.24
659 678 4.086457 GGATTTGCTTTAGGTTGGAGGAA 58.914 43.478 0.00 0.00 0.00 3.36
670 689 5.302568 GTGGATCATGGATGGATTTGCTTTA 59.697 40.000 0.00 0.00 0.00 1.85
676 695 2.442878 TCGGTGGATCATGGATGGATTT 59.557 45.455 0.00 0.00 0.00 2.17
823 852 1.591280 TAGAGGAGGGGGAGGGTGAC 61.591 65.000 0.00 0.00 0.00 3.67
824 853 0.633835 ATAGAGGAGGGGGAGGGTGA 60.634 60.000 0.00 0.00 0.00 4.02
826 855 1.951618 TTATAGAGGAGGGGGAGGGT 58.048 55.000 0.00 0.00 0.00 4.34
881 1000 2.368221 AGATGGGCATGAGCTAGAGAAC 59.632 50.000 0.00 0.00 41.70 3.01
995 1145 0.817654 CCACTGCTCGTCCATGTCTA 59.182 55.000 0.00 0.00 0.00 2.59
1487 1660 4.052229 CCTTGACCTCGTCGGCGT 62.052 66.667 10.18 0.00 39.49 5.68
1582 1763 0.818296 CGAGGAAGAAGATGGACGGT 59.182 55.000 0.00 0.00 0.00 4.83
1874 2079 2.685897 CGCTCTTCCTGCTACTAGAACT 59.314 50.000 0.00 0.00 0.00 3.01
1876 2081 2.025155 CCGCTCTTCCTGCTACTAGAA 58.975 52.381 0.00 0.00 0.00 2.10
1880 2085 2.896443 GCCGCTCTTCCTGCTACT 59.104 61.111 0.00 0.00 0.00 2.57
2020 2232 4.296729 ACGGGGTCCCTCGTCAGT 62.297 66.667 16.16 2.24 34.20 3.41
2037 2249 2.664851 CGAGTGCCGCCTTGAACA 60.665 61.111 0.00 0.00 0.00 3.18
2105 2317 5.047021 TGTGACTATATTCTCCTATGCTGGC 60.047 44.000 0.00 0.00 0.00 4.85
2106 2318 6.596309 TGTGACTATATTCTCCTATGCTGG 57.404 41.667 0.00 0.00 0.00 4.85
2107 2319 7.834803 TCATGTGACTATATTCTCCTATGCTG 58.165 38.462 0.00 0.00 0.00 4.41
2108 2320 7.363705 GCTCATGTGACTATATTCTCCTATGCT 60.364 40.741 0.00 0.00 0.00 3.79
2109 2321 6.756074 GCTCATGTGACTATATTCTCCTATGC 59.244 42.308 0.00 0.00 0.00 3.14
2202 2416 2.679996 GCCCCAATTTGCGGGTCT 60.680 61.111 18.55 0.00 42.77 3.85
2208 2422 0.327591 TTTCCATGGCCCCAATTTGC 59.672 50.000 6.96 0.00 0.00 3.68
2216 2430 1.828224 GATCCGGTTTCCATGGCCC 60.828 63.158 6.96 5.85 0.00 5.80
2225 2439 4.973211 TCCCTAAATTAGAGGATCCGGTTT 59.027 41.667 5.98 7.04 35.99 3.27
2230 2444 6.765355 TTCCTTCCCTAAATTAGAGGATCC 57.235 41.667 2.48 2.48 35.99 3.36
2259 2473 1.153745 GGCTAGCACTCTGTCACCG 60.154 63.158 18.24 0.00 0.00 4.94
2261 2475 2.096248 ACTAGGCTAGCACTCTGTCAC 58.904 52.381 21.26 0.00 0.00 3.67
2265 2479 4.720649 TTTACACTAGGCTAGCACTCTG 57.279 45.455 21.26 13.59 0.00 3.35
2300 2514 3.587506 ACAACCTGCTAACAGTCCCTAAT 59.412 43.478 0.00 0.00 42.81 1.73
2307 2521 4.777463 ACAGTAAACAACCTGCTAACAGT 58.223 39.130 0.00 0.00 42.81 3.55
2309 2523 4.336993 CCAACAGTAAACAACCTGCTAACA 59.663 41.667 0.00 0.00 0.00 2.41
2310 2524 4.337274 ACCAACAGTAAACAACCTGCTAAC 59.663 41.667 0.00 0.00 0.00 2.34
2311 2525 4.528920 ACCAACAGTAAACAACCTGCTAA 58.471 39.130 0.00 0.00 0.00 3.09
2312 2526 4.159244 ACCAACAGTAAACAACCTGCTA 57.841 40.909 0.00 0.00 0.00 3.49
2313 2527 3.012934 ACCAACAGTAAACAACCTGCT 57.987 42.857 0.00 0.00 0.00 4.24
2314 2528 5.447624 AATACCAACAGTAAACAACCTGC 57.552 39.130 0.00 0.00 33.70 4.85
2315 2529 9.405587 CAATAAATACCAACAGTAAACAACCTG 57.594 33.333 0.00 0.00 33.70 4.00
2316 2530 9.138596 ACAATAAATACCAACAGTAAACAACCT 57.861 29.630 0.00 0.00 33.70 3.50
2448 2665 7.345691 TCAGTCCATATGATCAAGGCTAAAAA 58.654 34.615 3.65 0.00 0.00 1.94
2474 2691 3.960571 AGAAGCTACGGTACACCTTCTA 58.039 45.455 14.43 0.00 40.12 2.10
2476 2693 3.589495 AAGAAGCTACGGTACACCTTC 57.411 47.619 0.00 9.01 33.80 3.46
2480 2697 5.347093 GGAAGTTAAAGAAGCTACGGTACAC 59.653 44.000 0.00 0.00 0.00 2.90
2481 2698 5.473039 GGAAGTTAAAGAAGCTACGGTACA 58.527 41.667 0.00 0.00 0.00 2.90
2482 2699 4.867047 GGGAAGTTAAAGAAGCTACGGTAC 59.133 45.833 0.00 0.00 0.00 3.34
2483 2700 4.774200 AGGGAAGTTAAAGAAGCTACGGTA 59.226 41.667 0.00 0.00 0.00 4.02
2484 2701 3.581770 AGGGAAGTTAAAGAAGCTACGGT 59.418 43.478 0.00 0.00 0.00 4.83
2485 2702 4.203654 AGGGAAGTTAAAGAAGCTACGG 57.796 45.455 0.00 0.00 0.00 4.02
2496 2713 8.660295 TCTCTAACATACAGAAGGGAAGTTAA 57.340 34.615 0.00 0.00 0.00 2.01
2498 2715 6.726764 ACTCTCTAACATACAGAAGGGAAGTT 59.273 38.462 0.00 0.00 0.00 2.66
2504 2721 6.406400 CCTGGAACTCTCTAACATACAGAAGG 60.406 46.154 0.00 0.00 0.00 3.46
2505 2722 6.568869 CCTGGAACTCTCTAACATACAGAAG 58.431 44.000 0.00 0.00 0.00 2.85
2526 2743 1.965643 CATATTTCACCCCATGGCCTG 59.034 52.381 6.09 3.17 33.59 4.85
2527 2744 1.133072 CCATATTTCACCCCATGGCCT 60.133 52.381 6.09 0.00 32.12 5.19
2533 2756 0.555769 GGGCTCCATATTTCACCCCA 59.444 55.000 0.00 0.00 0.00 4.96
2541 2764 1.915228 AGCGTGTGGGCTCCATATT 59.085 52.632 0.00 0.00 39.61 1.28
2542 2765 3.647367 AGCGTGTGGGCTCCATAT 58.353 55.556 0.00 0.00 39.61 1.78
2558 2781 3.375642 CACACGACATAGCCATACAGAG 58.624 50.000 0.00 0.00 0.00 3.35
2563 2786 0.756294 CCCCACACGACATAGCCATA 59.244 55.000 0.00 0.00 0.00 2.74
2570 2793 2.923426 CTATGCGCCCCACACGACAT 62.923 60.000 4.18 0.00 33.84 3.06
2575 2798 2.897350 GCTCTATGCGCCCCACAC 60.897 66.667 4.18 0.00 0.00 3.82
2602 2825 4.449131 ACATCATATGTTGCAGAGAGGTG 58.551 43.478 12.72 0.00 41.63 4.00
2659 2885 6.236409 CCATGATGCCTATGTTGAGAACTAT 58.764 40.000 0.00 0.00 0.00 2.12
2664 2890 2.487805 GCCCATGATGCCTATGTTGAGA 60.488 50.000 0.00 0.00 0.00 3.27
2673 2899 1.779092 AGATAGTTGCCCATGATGCCT 59.221 47.619 0.00 0.00 0.00 4.75
2674 2900 2.157738 GAGATAGTTGCCCATGATGCC 58.842 52.381 0.00 0.00 0.00 4.40
2685 2913 1.866063 GCCGCGGAGAAGAGATAGTTG 60.866 57.143 33.48 0.00 0.00 3.16
2688 2916 0.039617 CTGCCGCGGAGAAGAGATAG 60.040 60.000 33.48 7.81 0.00 2.08
2689 2917 0.465642 TCTGCCGCGGAGAAGAGATA 60.466 55.000 33.48 3.58 0.00 1.98
2702 2930 2.742589 GTTAGTTTTCTCCCTTCTGCCG 59.257 50.000 0.00 0.00 0.00 5.69
2706 2934 6.555360 TGAGAAGAGTTAGTTTTCTCCCTTCT 59.445 38.462 14.98 0.00 43.82 2.85
2722 2950 4.594920 TGAGATCAACCCTTTGAGAAGAGT 59.405 41.667 0.00 0.00 45.07 3.24
2724 2952 5.567037 TTGAGATCAACCCTTTGAGAAGA 57.433 39.130 0.00 0.00 45.07 2.87
2742 2970 2.293122 TCTGTTGGCAAATTCCGTTGAG 59.707 45.455 0.00 0.00 0.00 3.02
2746 2974 0.591170 CGTCTGTTGGCAAATTCCGT 59.409 50.000 0.00 0.00 0.00 4.69
2758 2986 2.673368 GCATCGATTTCCTTCGTCTGTT 59.327 45.455 0.00 0.00 40.03 3.16
2760 2988 1.594862 GGCATCGATTTCCTTCGTCTG 59.405 52.381 0.00 0.00 40.03 3.51
2777 3005 2.076100 GTGTTGAGAACGATGATGGCA 58.924 47.619 0.00 0.00 0.00 4.92
2810 3038 9.512588 AGTGATGAAGTAGATGAAGATGTTTTT 57.487 29.630 0.00 0.00 0.00 1.94
2856 3084 3.436577 TCATAAACGGGGCAAGGTAAA 57.563 42.857 0.00 0.00 0.00 2.01
2862 3090 2.279935 ACTGTTCATAAACGGGGCAA 57.720 45.000 0.00 0.00 44.63 4.52
2863 3091 2.279935 AACTGTTCATAAACGGGGCA 57.720 45.000 0.00 0.00 44.63 5.36
2883 3111 8.880991 AGTGATAACCATAACCGATCTATAGT 57.119 34.615 0.00 0.00 0.00 2.12
2912 3140 8.556213 TCACTACTAAACATCAATTAACACCC 57.444 34.615 0.00 0.00 0.00 4.61
2987 3216 9.857656 AATGAACATGATTAGTGGAGTATGAAT 57.142 29.630 0.00 0.00 0.00 2.57
3027 3256 5.690865 TCCTCAAGAACATGGTGTTTTACT 58.309 37.500 0.00 0.00 41.28 2.24
3047 3276 2.441001 CAATAGGCTTCTCCCACATCCT 59.559 50.000 0.00 0.00 34.51 3.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.