Multiple sequence alignment - TraesCS7A01G507800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G507800 chr7A 100.000 3880 0 0 1 3880 694518776 694514897 0.000000e+00 7166.0
1 TraesCS7A01G507800 chr7A 87.204 211 27 0 1151 1361 581035265 581035475 1.390000e-59 241.0
2 TraesCS7A01G507800 chr7D 89.791 2968 200 60 827 3740 602849020 602846102 0.000000e+00 3707.0
3 TraesCS7A01G507800 chr7D 94.294 333 18 1 1 333 177572080 177572411 3.460000e-140 508.0
4 TraesCS7A01G507800 chr7D 92.953 298 8 5 470 757 602849745 602849451 4.630000e-114 422.0
5 TraesCS7A01G507800 chr7D 78.926 484 91 10 2403 2879 510324837 510325316 6.260000e-83 318.0
6 TraesCS7A01G507800 chr7D 85.185 243 34 2 1119 1361 510323404 510323644 8.320000e-62 248.0
7 TraesCS7A01G507800 chr7D 91.724 145 9 2 330 472 602850398 602850255 8.500000e-47 198.0
8 TraesCS7A01G507800 chr7D 92.523 107 8 0 3752 3858 602844181 602844075 1.870000e-33 154.0
9 TraesCS7A01G507800 chr7B 92.275 2356 101 39 823 3157 683468963 683466668 0.000000e+00 3267.0
10 TraesCS7A01G507800 chr7B 95.152 330 15 1 1 329 390608683 390609012 1.600000e-143 520.0
11 TraesCS7A01G507800 chr7B 87.291 299 32 4 330 627 683469850 683469557 1.730000e-88 337.0
12 TraesCS7A01G507800 chr7B 78.958 480 92 8 2403 2876 538572394 538572870 6.260000e-83 318.0
13 TraesCS7A01G507800 chr7B 85.841 226 32 0 1136 1361 538570961 538571186 1.390000e-59 241.0
14 TraesCS7A01G507800 chr7B 87.755 196 13 3 622 817 683469233 683469049 6.530000e-53 219.0
15 TraesCS7A01G507800 chr3D 94.864 331 16 1 1 331 484285513 484285184 2.070000e-142 516.0
16 TraesCS7A01G507800 chr3D 78.468 483 93 10 2404 2879 156212226 156212704 4.870000e-79 305.0
17 TraesCS7A01G507800 chr3D 87.000 200 26 0 1162 1361 156210829 156211028 3.900000e-55 226.0
18 TraesCS7A01G507800 chr4B 94.595 333 16 2 1 333 393154274 393153944 7.430000e-142 514.0
19 TraesCS7A01G507800 chr4B 83.117 154 24 2 330 482 658661696 658661848 5.230000e-29 139.0
20 TraesCS7A01G507800 chr1A 94.578 332 17 1 1 332 101280061 101280391 2.670000e-141 512.0
21 TraesCS7A01G507800 chr6A 94.294 333 19 0 1 333 278736775 278737107 9.620000e-141 510.0
22 TraesCS7A01G507800 chr6A 94.277 332 19 0 1 332 371704978 371705309 3.460000e-140 508.0
23 TraesCS7A01G507800 chr5A 94.562 331 17 1 1 331 372570512 372570183 9.620000e-141 510.0
24 TraesCS7A01G507800 chr2B 93.529 340 19 3 1 338 797738140 797737802 1.610000e-138 503.0
25 TraesCS7A01G507800 chr3A 78.423 482 95 8 2404 2879 175846163 175846641 4.870000e-79 305.0
26 TraesCS7A01G507800 chr3B 78.194 454 92 6 2404 2852 225316113 225315662 2.280000e-72 283.0
27 TraesCS7A01G507800 chr3B 85.782 211 30 0 1151 1361 225319822 225319612 1.400000e-54 224.0
28 TraesCS7A01G507800 chr5D 82.353 153 25 2 330 481 393911175 393911024 8.750000e-27 132.0
29 TraesCS7A01G507800 chr1B 82.105 95 17 0 1915 2009 115281700 115281606 8.930000e-12 82.4
30 TraesCS7A01G507800 chr4D 78.030 132 23 6 366 494 78846413 78846285 1.160000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G507800 chr7A 694514897 694518776 3879 True 7166.000000 7166 100.00000 1 3880 1 chr7A.!!$R1 3879
1 TraesCS7A01G507800 chr7D 602844075 602850398 6323 True 1120.250000 3707 91.74775 330 3858 4 chr7D.!!$R1 3528
2 TraesCS7A01G507800 chr7D 510323404 510325316 1912 False 283.000000 318 82.05550 1119 2879 2 chr7D.!!$F2 1760
3 TraesCS7A01G507800 chr7B 683466668 683469850 3182 True 1274.333333 3267 89.10700 330 3157 3 chr7B.!!$R1 2827
4 TraesCS7A01G507800 chr7B 538570961 538572870 1909 False 279.500000 318 82.39950 1136 2876 2 chr7B.!!$F2 1740
5 TraesCS7A01G507800 chr3D 156210829 156212704 1875 False 265.500000 305 82.73400 1162 2879 2 chr3D.!!$F1 1717
6 TraesCS7A01G507800 chr3B 225315662 225319822 4160 True 253.500000 283 81.98800 1151 2852 2 chr3B.!!$R1 1701


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
176 177 0.168128 GACGGCGGGTTGATTTCAAG 59.832 55.0 13.24 0.00 36.39 3.02 F
246 247 0.179023 TTAAAACAGGACCGCGGGTT 60.179 50.0 31.76 20.53 35.25 4.11 F
257 258 0.391130 CCGCGGGTTGAATTCTCTGA 60.391 55.0 20.10 0.00 0.00 3.27 F
549 1067 0.664166 GCCTTTGACGCCATGTTGTG 60.664 55.0 0.00 0.00 0.00 3.33 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1731 5377 0.690762 TGTTGGTGTAGGAGAAGCCC 59.309 55.000 0.0 0.0 37.37 5.19 R
2147 6025 0.760945 AGATCCCATCCGAGACCACC 60.761 60.000 0.0 0.0 0.00 4.61 R
2230 6144 1.270094 TGAAGAAGTCGTTCCATGCGT 60.270 47.619 0.0 0.0 32.48 5.24 R
2882 6829 2.038557 AGTGGGTGCTAATGAACGAACT 59.961 45.455 0.0 0.0 0.00 3.01 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 5.789710 ACATGTTTAAATCGGAGTTACGG 57.210 39.130 0.00 0.00 0.00 4.02
29 30 5.240121 ACATGTTTAAATCGGAGTTACGGT 58.760 37.500 0.00 0.00 0.00 4.83
30 31 5.702209 ACATGTTTAAATCGGAGTTACGGTT 59.298 36.000 0.00 0.00 39.15 4.44
32 33 7.387397 ACATGTTTAAATCGGAGTTACGGTTTA 59.613 33.333 0.00 0.00 44.49 2.01
38 39 7.677454 AAATCGGAGTTACGGTTTAAAAGAT 57.323 32.000 0.00 0.00 44.49 2.40
39 40 8.776376 AAATCGGAGTTACGGTTTAAAAGATA 57.224 30.769 0.00 0.00 44.49 1.98
40 41 8.953368 AATCGGAGTTACGGTTTAAAAGATAT 57.047 30.769 0.00 0.00 32.43 1.63
41 42 7.760131 TCGGAGTTACGGTTTAAAAGATATG 57.240 36.000 0.00 0.00 0.00 1.78
42 43 6.757947 TCGGAGTTACGGTTTAAAAGATATGG 59.242 38.462 0.00 0.00 0.00 2.74
43 44 6.757947 CGGAGTTACGGTTTAAAAGATATGGA 59.242 38.462 0.00 0.00 0.00 3.41
44 45 7.440255 CGGAGTTACGGTTTAAAAGATATGGAT 59.560 37.037 0.00 0.00 0.00 3.41
45 46 8.557029 GGAGTTACGGTTTAAAAGATATGGATG 58.443 37.037 0.00 0.00 0.00 3.51
46 47 9.321562 GAGTTACGGTTTAAAAGATATGGATGA 57.678 33.333 0.00 0.00 0.00 2.92
47 48 9.847224 AGTTACGGTTTAAAAGATATGGATGAT 57.153 29.630 0.00 0.00 0.00 2.45
66 67 9.947669 TGGATGATTTTAAAAAGCATTTGTTTG 57.052 25.926 16.19 0.00 39.02 2.93
81 82 9.807649 AGCATTTGTTTGACTTAAATATGATCC 57.192 29.630 0.00 0.00 0.00 3.36
82 83 8.745837 GCATTTGTTTGACTTAAATATGATCCG 58.254 33.333 0.00 0.00 0.00 4.18
83 84 9.787532 CATTTGTTTGACTTAAATATGATCCGT 57.212 29.630 0.00 0.00 0.00 4.69
84 85 9.787532 ATTTGTTTGACTTAAATATGATCCGTG 57.212 29.630 0.00 0.00 0.00 4.94
85 86 7.315247 TGTTTGACTTAAATATGATCCGTGG 57.685 36.000 0.00 0.00 0.00 4.94
86 87 7.106890 TGTTTGACTTAAATATGATCCGTGGA 58.893 34.615 0.00 0.00 0.00 4.02
87 88 7.773224 TGTTTGACTTAAATATGATCCGTGGAT 59.227 33.333 0.00 0.00 37.59 3.41
88 89 7.728847 TTGACTTAAATATGATCCGTGGATG 57.271 36.000 6.03 0.00 34.60 3.51
89 90 7.061566 TGACTTAAATATGATCCGTGGATGA 57.938 36.000 6.03 0.00 34.60 2.92
90 91 7.505258 TGACTTAAATATGATCCGTGGATGAA 58.495 34.615 6.03 0.00 34.60 2.57
91 92 8.156820 TGACTTAAATATGATCCGTGGATGAAT 58.843 33.333 6.03 2.80 34.60 2.57
92 93 8.924511 ACTTAAATATGATCCGTGGATGAATT 57.075 30.769 6.03 0.72 34.60 2.17
95 96 7.687941 AAATATGATCCGTGGATGAATTACC 57.312 36.000 6.03 0.00 34.60 2.85
96 97 4.982241 ATGATCCGTGGATGAATTACCT 57.018 40.909 6.03 0.00 34.60 3.08
97 98 7.733773 ATATGATCCGTGGATGAATTACCTA 57.266 36.000 6.03 0.00 34.60 3.08
98 99 5.880164 TGATCCGTGGATGAATTACCTAA 57.120 39.130 6.03 0.00 34.60 2.69
99 100 6.241882 TGATCCGTGGATGAATTACCTAAA 57.758 37.500 6.03 0.00 34.60 1.85
100 101 6.654959 TGATCCGTGGATGAATTACCTAAAA 58.345 36.000 6.03 0.00 34.60 1.52
101 102 6.540914 TGATCCGTGGATGAATTACCTAAAAC 59.459 38.462 6.03 0.00 34.60 2.43
102 103 5.806818 TCCGTGGATGAATTACCTAAAACA 58.193 37.500 0.00 0.00 0.00 2.83
103 104 6.419791 TCCGTGGATGAATTACCTAAAACAT 58.580 36.000 0.00 0.00 0.00 2.71
104 105 6.540914 TCCGTGGATGAATTACCTAAAACATC 59.459 38.462 0.00 0.00 34.37 3.06
105 106 6.317642 CCGTGGATGAATTACCTAAAACATCA 59.682 38.462 0.00 0.00 35.54 3.07
106 107 7.409697 CGTGGATGAATTACCTAAAACATCAG 58.590 38.462 0.00 0.00 35.54 2.90
107 108 7.467267 CGTGGATGAATTACCTAAAACATCAGG 60.467 40.741 0.00 0.00 35.54 3.86
108 109 6.833416 TGGATGAATTACCTAAAACATCAGGG 59.167 38.462 0.00 0.00 36.15 4.45
109 110 6.265422 GGATGAATTACCTAAAACATCAGGGG 59.735 42.308 0.00 0.00 36.15 4.79
110 111 5.515106 TGAATTACCTAAAACATCAGGGGG 58.485 41.667 0.00 0.00 36.15 5.40
148 149 9.793259 ATATAAAATAATGATTCGGGTGTGACT 57.207 29.630 0.00 0.00 0.00 3.41
149 150 6.834168 AAAATAATGATTCGGGTGTGACTT 57.166 33.333 0.00 0.00 0.00 3.01
150 151 7.931578 AAAATAATGATTCGGGTGTGACTTA 57.068 32.000 0.00 0.00 0.00 2.24
151 152 7.931578 AAATAATGATTCGGGTGTGACTTAA 57.068 32.000 0.00 0.00 0.00 1.85
152 153 7.931578 AATAATGATTCGGGTGTGACTTAAA 57.068 32.000 0.00 0.00 0.00 1.52
153 154 8.519799 AATAATGATTCGGGTGTGACTTAAAT 57.480 30.769 0.00 0.00 0.00 1.40
154 155 6.436843 AATGATTCGGGTGTGACTTAAATC 57.563 37.500 0.00 0.00 0.00 2.17
155 156 4.258543 TGATTCGGGTGTGACTTAAATCC 58.741 43.478 0.00 0.00 0.00 3.01
156 157 2.373540 TCGGGTGTGACTTAAATCCG 57.626 50.000 0.00 0.00 37.61 4.18
157 158 1.066716 TCGGGTGTGACTTAAATCCGG 60.067 52.381 0.00 0.00 36.99 5.14
158 159 1.066716 CGGGTGTGACTTAAATCCGGA 60.067 52.381 6.61 6.61 33.27 5.14
159 160 2.353323 GGGTGTGACTTAAATCCGGAC 58.647 52.381 6.12 0.00 0.00 4.79
160 161 1.997606 GGTGTGACTTAAATCCGGACG 59.002 52.381 6.12 0.00 0.00 4.79
161 162 1.997606 GTGTGACTTAAATCCGGACGG 59.002 52.381 6.12 3.96 0.00 4.79
162 163 1.004595 GTGACTTAAATCCGGACGGC 58.995 55.000 6.12 0.00 34.68 5.68
163 164 0.458889 TGACTTAAATCCGGACGGCG 60.459 55.000 6.12 4.80 34.68 6.46
164 165 1.149964 GACTTAAATCCGGACGGCGG 61.150 60.000 6.12 0.00 34.68 6.13
165 166 1.885850 CTTAAATCCGGACGGCGGG 60.886 63.158 6.12 8.96 35.92 6.13
166 167 2.582734 CTTAAATCCGGACGGCGGGT 62.583 60.000 15.41 0.00 36.04 5.28
167 168 2.182732 TTAAATCCGGACGGCGGGTT 62.183 55.000 15.41 3.28 36.04 4.11
168 169 2.855880 TAAATCCGGACGGCGGGTTG 62.856 60.000 15.41 0.00 36.04 3.77
171 172 4.770874 CCGGACGGCGGGTTGATT 62.771 66.667 13.24 0.00 0.00 2.57
172 173 2.744709 CGGACGGCGGGTTGATTT 60.745 61.111 13.24 0.00 0.00 2.17
173 174 2.746803 CGGACGGCGGGTTGATTTC 61.747 63.158 13.24 0.00 0.00 2.17
174 175 1.673009 GGACGGCGGGTTGATTTCA 60.673 57.895 13.24 0.00 0.00 2.69
175 176 1.238625 GGACGGCGGGTTGATTTCAA 61.239 55.000 13.24 0.00 0.00 2.69
176 177 0.168128 GACGGCGGGTTGATTTCAAG 59.832 55.000 13.24 0.00 36.39 3.02
177 178 0.250553 ACGGCGGGTTGATTTCAAGA 60.251 50.000 13.24 0.00 36.39 3.02
178 179 0.878416 CGGCGGGTTGATTTCAAGAA 59.122 50.000 0.00 0.00 36.39 2.52
179 180 1.268352 CGGCGGGTTGATTTCAAGAAA 59.732 47.619 0.00 0.00 36.39 2.52
180 181 2.287909 CGGCGGGTTGATTTCAAGAAAA 60.288 45.455 0.00 0.00 36.39 2.29
181 182 3.317150 GGCGGGTTGATTTCAAGAAAAG 58.683 45.455 0.00 0.00 36.39 2.27
182 183 3.005367 GGCGGGTTGATTTCAAGAAAAGA 59.995 43.478 0.00 0.00 36.39 2.52
183 184 3.981416 GCGGGTTGATTTCAAGAAAAGAC 59.019 43.478 0.00 0.00 36.39 3.01
184 185 4.499019 GCGGGTTGATTTCAAGAAAAGACA 60.499 41.667 0.00 0.00 36.39 3.41
185 186 5.215160 CGGGTTGATTTCAAGAAAAGACAG 58.785 41.667 0.00 0.00 36.39 3.51
186 187 5.008613 CGGGTTGATTTCAAGAAAAGACAGA 59.991 40.000 0.00 0.00 36.39 3.41
187 188 6.442112 GGGTTGATTTCAAGAAAAGACAGAG 58.558 40.000 0.00 0.00 36.39 3.35
188 189 6.263168 GGGTTGATTTCAAGAAAAGACAGAGA 59.737 38.462 0.00 0.00 36.39 3.10
189 190 7.135467 GGTTGATTTCAAGAAAAGACAGAGAC 58.865 38.462 0.00 0.00 36.39 3.36
190 191 7.012799 GGTTGATTTCAAGAAAAGACAGAGACT 59.987 37.037 0.00 0.00 36.39 3.24
191 192 8.401709 GTTGATTTCAAGAAAAGACAGAGACTT 58.598 33.333 0.00 0.00 36.39 3.01
192 193 8.511604 TGATTTCAAGAAAAGACAGAGACTTT 57.488 30.769 0.00 0.00 38.91 2.66
193 194 8.960591 TGATTTCAAGAAAAGACAGAGACTTTT 58.039 29.630 0.00 0.00 45.95 2.27
194 195 9.230932 GATTTCAAGAAAAGACAGAGACTTTTG 57.769 33.333 10.86 0.63 44.20 2.44
195 196 7.687941 TTCAAGAAAAGACAGAGACTTTTGT 57.312 32.000 10.86 5.52 44.20 2.83
196 197 7.076842 TCAAGAAAAGACAGAGACTTTTGTG 57.923 36.000 10.86 9.08 44.20 3.33
197 198 6.655003 TCAAGAAAAGACAGAGACTTTTGTGT 59.345 34.615 10.86 0.00 44.20 3.72
198 199 7.822334 TCAAGAAAAGACAGAGACTTTTGTGTA 59.178 33.333 10.86 0.00 44.20 2.90
199 200 8.450964 CAAGAAAAGACAGAGACTTTTGTGTAA 58.549 33.333 10.86 0.00 44.20 2.41
200 201 8.561738 AGAAAAGACAGAGACTTTTGTGTAAA 57.438 30.769 10.86 0.00 44.20 2.01
201 202 9.010029 AGAAAAGACAGAGACTTTTGTGTAAAA 57.990 29.630 10.86 0.00 44.20 1.52
202 203 9.788960 GAAAAGACAGAGACTTTTGTGTAAAAT 57.211 29.630 10.86 0.00 44.20 1.82
205 206 8.073355 AGACAGAGACTTTTGTGTAAAATACG 57.927 34.615 0.00 0.00 35.39 3.06
206 207 7.924412 AGACAGAGACTTTTGTGTAAAATACGA 59.076 33.333 0.00 0.00 35.39 3.43
207 208 8.428186 ACAGAGACTTTTGTGTAAAATACGAA 57.572 30.769 0.00 0.00 35.39 3.85
208 209 8.885722 ACAGAGACTTTTGTGTAAAATACGAAA 58.114 29.630 0.00 0.00 35.39 3.46
209 210 9.710979 CAGAGACTTTTGTGTAAAATACGAAAA 57.289 29.630 0.00 0.00 35.39 2.29
242 243 4.471157 TTTAACTTAAAACAGGACCGCG 57.529 40.909 0.00 0.00 0.00 6.46
243 244 1.232119 AACTTAAAACAGGACCGCGG 58.768 50.000 26.86 26.86 0.00 6.46
244 245 0.604511 ACTTAAAACAGGACCGCGGG 60.605 55.000 31.76 14.36 0.00 6.13
245 246 0.604511 CTTAAAACAGGACCGCGGGT 60.605 55.000 31.76 15.13 39.44 5.28
246 247 0.179023 TTAAAACAGGACCGCGGGTT 60.179 50.000 31.76 20.53 35.25 4.11
247 248 0.885596 TAAAACAGGACCGCGGGTTG 60.886 55.000 31.76 24.78 35.25 3.77
248 249 2.612095 AAAACAGGACCGCGGGTTGA 62.612 55.000 31.76 0.00 35.25 3.18
249 250 2.612095 AAACAGGACCGCGGGTTGAA 62.612 55.000 31.76 0.00 35.25 2.69
250 251 2.046314 CAGGACCGCGGGTTGAAT 60.046 61.111 31.76 6.78 35.25 2.57
251 252 1.674322 CAGGACCGCGGGTTGAATT 60.674 57.895 31.76 5.85 35.25 2.17
252 253 1.376812 AGGACCGCGGGTTGAATTC 60.377 57.895 31.76 15.78 35.25 2.17
253 254 1.376812 GGACCGCGGGTTGAATTCT 60.377 57.895 31.76 3.99 35.25 2.40
254 255 1.366854 GGACCGCGGGTTGAATTCTC 61.367 60.000 31.76 14.18 35.25 2.87
255 256 0.391263 GACCGCGGGTTGAATTCTCT 60.391 55.000 31.76 2.41 35.25 3.10
256 257 0.673644 ACCGCGGGTTGAATTCTCTG 60.674 55.000 31.76 0.00 27.29 3.35
257 258 0.391130 CCGCGGGTTGAATTCTCTGA 60.391 55.000 20.10 0.00 0.00 3.27
258 259 1.438651 CGCGGGTTGAATTCTCTGAA 58.561 50.000 7.05 0.00 0.00 3.02
259 260 1.804151 CGCGGGTTGAATTCTCTGAAA 59.196 47.619 7.05 0.00 0.00 2.69
260 261 2.420022 CGCGGGTTGAATTCTCTGAAAT 59.580 45.455 7.05 0.00 0.00 2.17
261 262 3.621268 CGCGGGTTGAATTCTCTGAAATA 59.379 43.478 7.05 0.00 0.00 1.40
262 263 4.260375 CGCGGGTTGAATTCTCTGAAATAG 60.260 45.833 7.05 0.00 0.00 1.73
263 264 4.876107 GCGGGTTGAATTCTCTGAAATAGA 59.124 41.667 7.05 0.00 0.00 1.98
277 278 7.808279 TCTGAAATAGAGGGACTTTCCTAAA 57.192 36.000 0.00 0.00 41.55 1.85
278 279 8.214721 TCTGAAATAGAGGGACTTTCCTAAAA 57.785 34.615 0.00 0.00 41.55 1.52
279 280 8.665906 TCTGAAATAGAGGGACTTTCCTAAAAA 58.334 33.333 0.00 0.00 41.55 1.94
295 296 1.529226 AAAAATGCCATGACGGACGA 58.471 45.000 0.00 0.00 36.56 4.20
296 297 1.529226 AAAATGCCATGACGGACGAA 58.471 45.000 0.00 0.00 36.56 3.85
297 298 1.529226 AAATGCCATGACGGACGAAA 58.471 45.000 0.00 0.00 36.56 3.46
298 299 1.750193 AATGCCATGACGGACGAAAT 58.250 45.000 0.00 0.00 36.56 2.17
299 300 2.613026 ATGCCATGACGGACGAAATA 57.387 45.000 0.00 0.00 36.56 1.40
300 301 2.388310 TGCCATGACGGACGAAATAA 57.612 45.000 0.00 0.00 36.56 1.40
301 302 2.701107 TGCCATGACGGACGAAATAAA 58.299 42.857 0.00 0.00 36.56 1.40
302 303 2.417239 TGCCATGACGGACGAAATAAAC 59.583 45.455 0.00 0.00 36.56 2.01
303 304 2.223180 GCCATGACGGACGAAATAAACC 60.223 50.000 0.00 0.00 36.56 3.27
304 305 2.353579 CCATGACGGACGAAATAAACCC 59.646 50.000 0.00 0.00 36.56 4.11
305 306 2.835580 TGACGGACGAAATAAACCCA 57.164 45.000 0.00 0.00 0.00 4.51
306 307 3.123157 TGACGGACGAAATAAACCCAA 57.877 42.857 0.00 0.00 0.00 4.12
307 308 3.677190 TGACGGACGAAATAAACCCAAT 58.323 40.909 0.00 0.00 0.00 3.16
308 309 4.073549 TGACGGACGAAATAAACCCAATT 58.926 39.130 0.00 0.00 0.00 2.32
309 310 4.519730 TGACGGACGAAATAAACCCAATTT 59.480 37.500 0.00 0.00 0.00 1.82
310 311 5.704515 TGACGGACGAAATAAACCCAATTTA 59.295 36.000 0.00 0.00 37.18 1.40
311 312 5.941733 ACGGACGAAATAAACCCAATTTAC 58.058 37.500 0.00 0.00 35.57 2.01
312 313 5.706833 ACGGACGAAATAAACCCAATTTACT 59.293 36.000 0.00 0.00 35.57 2.24
313 314 6.207221 ACGGACGAAATAAACCCAATTTACTT 59.793 34.615 0.00 0.00 35.57 2.24
314 315 7.085746 CGGACGAAATAAACCCAATTTACTTT 58.914 34.615 0.00 0.00 35.57 2.66
315 316 8.235905 CGGACGAAATAAACCCAATTTACTTTA 58.764 33.333 0.00 0.00 35.57 1.85
353 354 4.853924 ACATGCTAAACAGGTTTTGAGG 57.146 40.909 9.88 2.18 41.41 3.86
355 356 4.649218 ACATGCTAAACAGGTTTTGAGGTT 59.351 37.500 9.88 0.00 41.41 3.50
415 416 3.521524 AACAGAGCGACGACATTTTTC 57.478 42.857 0.00 0.00 0.00 2.29
423 424 2.310577 GACGACATTTTTCAGCAGTGC 58.689 47.619 7.13 7.13 0.00 4.40
549 1067 0.664166 GCCTTTGACGCCATGTTGTG 60.664 55.000 0.00 0.00 0.00 3.33
672 1527 2.125512 GCGCCTGATGACCTTCGT 60.126 61.111 0.00 0.00 0.00 3.85
718 1573 8.206867 CAGGATGACTAAATCTATTCACCAGAA 58.793 37.037 0.00 0.00 39.69 3.02
731 1586 3.808728 TCACCAGAAAGGAGTTCACAAG 58.191 45.455 0.00 0.00 41.22 3.16
732 1587 2.880890 CACCAGAAAGGAGTTCACAAGG 59.119 50.000 0.00 0.00 41.22 3.61
733 1588 2.777692 ACCAGAAAGGAGTTCACAAGGA 59.222 45.455 0.00 0.00 41.22 3.36
734 1589 3.181450 ACCAGAAAGGAGTTCACAAGGAG 60.181 47.826 0.00 0.00 41.22 3.69
748 1604 6.202516 TCACAAGGAGTAAAAACAAACAGG 57.797 37.500 0.00 0.00 0.00 4.00
773 1629 6.882768 AGGAGTTCATATTTTCCTCACTCT 57.117 37.500 0.00 0.00 35.11 3.24
774 1630 6.883744 AGGAGTTCATATTTTCCTCACTCTC 58.116 40.000 0.00 0.00 35.11 3.20
786 1642 4.467107 ACTCTCCCGCCCCCTCTC 62.467 72.222 0.00 0.00 0.00 3.20
817 1973 3.841255 TCCAAAGTCCAAAACAAAACCCT 59.159 39.130 0.00 0.00 0.00 4.34
818 1974 4.287326 TCCAAAGTCCAAAACAAAACCCTT 59.713 37.500 0.00 0.00 0.00 3.95
819 1975 4.634004 CCAAAGTCCAAAACAAAACCCTTC 59.366 41.667 0.00 0.00 0.00 3.46
820 1976 5.487433 CAAAGTCCAAAACAAAACCCTTCT 58.513 37.500 0.00 0.00 0.00 2.85
842 2080 2.779471 CCGTCTTTTGTAACAAACGCAC 59.221 45.455 0.00 0.00 0.00 5.34
884 2122 1.472480 CCAACAAACAAGCCCTATCCG 59.528 52.381 0.00 0.00 0.00 4.18
922 2160 1.219131 AAACCCTATCCCACCCACCC 61.219 60.000 0.00 0.00 0.00 4.61
931 2169 2.436109 CACCCACCCACCTCCAAG 59.564 66.667 0.00 0.00 0.00 3.61
946 2184 3.070015 CCTCCAAGAAACCAGCAACAAAT 59.930 43.478 0.00 0.00 0.00 2.32
948 2186 3.960102 TCCAAGAAACCAGCAACAAATCT 59.040 39.130 0.00 0.00 0.00 2.40
1002 2244 1.221466 CGGCCGGGCGCATATATATG 61.221 60.000 38.10 17.01 40.31 1.78
1053 2295 0.677288 CAGTCGACACCAGTAACCCA 59.323 55.000 19.50 0.00 0.00 4.51
1087 2329 3.818787 CAGCCATGGCCACTTCGC 61.819 66.667 33.14 7.40 43.17 4.70
1100 2342 4.357947 TTCGCCGTCGAGCAGCTT 62.358 61.111 0.00 0.00 46.34 3.74
1399 4060 7.506328 TTGTTTAGTAGATGCGATCTAGCTA 57.494 36.000 6.23 0.00 42.20 3.32
1402 4063 8.237949 TGTTTAGTAGATGCGATCTAGCTAATC 58.762 37.037 16.82 16.32 42.20 1.75
1406 4076 5.058149 AGATGCGATCTAGCTAATCAGTG 57.942 43.478 13.05 0.00 38.00 3.66
1407 4077 4.522405 AGATGCGATCTAGCTAATCAGTGT 59.478 41.667 13.05 1.26 38.00 3.55
1408 4078 5.707764 AGATGCGATCTAGCTAATCAGTGTA 59.292 40.000 13.05 2.13 38.00 2.90
1409 4079 5.109662 TGCGATCTAGCTAATCAGTGTAC 57.890 43.478 13.05 0.00 38.13 2.90
1410 4080 4.578928 TGCGATCTAGCTAATCAGTGTACA 59.421 41.667 13.05 0.00 38.13 2.90
1417 4087 8.577048 TCTAGCTAATCAGTGTACACTTAGTT 57.423 34.615 25.89 22.17 40.20 2.24
1419 4089 9.719279 CTAGCTAATCAGTGTACACTTAGTTAC 57.281 37.037 25.89 13.98 40.20 2.50
1430 4100 7.758528 GTGTACACTTAGTTACTCGATCCATTT 59.241 37.037 18.92 0.00 0.00 2.32
1455 4125 3.284617 TCCATTGAGTTCCATGCATGAG 58.715 45.455 28.31 17.31 0.00 2.90
1467 4137 7.994911 AGTTCCATGCATGAGATGAAACTAATA 59.005 33.333 28.31 2.14 0.00 0.98
1469 4139 8.929260 TCCATGCATGAGATGAAACTAATATT 57.071 30.769 28.31 0.00 0.00 1.28
1470 4140 8.789762 TCCATGCATGAGATGAAACTAATATTG 58.210 33.333 28.31 4.51 0.00 1.90
1471 4141 8.027189 CCATGCATGAGATGAAACTAATATTGG 58.973 37.037 28.31 1.42 0.00 3.16
1472 4142 8.789762 CATGCATGAGATGAAACTAATATTGGA 58.210 33.333 22.59 0.00 0.00 3.53
1473 4143 8.929260 TGCATGAGATGAAACTAATATTGGAT 57.071 30.769 5.74 0.00 0.00 3.41
1513 4193 2.064581 GTCCGTGGGGTATGGAGCT 61.065 63.158 0.00 0.00 45.11 4.09
1608 4288 5.047519 ACAAAGGTACGCACTAGTTACATCT 60.048 40.000 0.00 0.00 0.00 2.90
1860 5540 5.708736 TCCTTTCATGGCATTAAGAGGTA 57.291 39.130 16.70 3.75 0.00 3.08
1864 5544 6.016777 CCTTTCATGGCATTAAGAGGTATGAC 60.017 42.308 16.70 0.00 0.00 3.06
1873 5553 8.230486 GGCATTAAGAGGTATGACAATTAATCG 58.770 37.037 0.00 0.00 29.93 3.34
1879 5559 7.607250 AGAGGTATGACAATTAATCGGATCTC 58.393 38.462 0.00 0.00 0.00 2.75
2084 5962 1.072159 CAAGGGGATCCTGATCGGC 59.928 63.158 12.58 0.00 44.07 5.54
2159 6037 4.129737 CACGCGGTGGTCTCGGAT 62.130 66.667 12.47 0.00 0.00 4.18
2612 6559 2.905681 GGTATCCGGGTGTGGGTC 59.094 66.667 0.00 0.00 0.00 4.46
2771 6718 2.022129 GCTCACCTTCGTCACCGTG 61.022 63.158 0.00 0.00 35.01 4.94
2882 6829 1.108776 AGGCCATCGTCGCTTAGTTA 58.891 50.000 5.01 0.00 0.00 2.24
2883 6830 1.067212 AGGCCATCGTCGCTTAGTTAG 59.933 52.381 5.01 0.00 0.00 2.34
2884 6831 1.202382 GGCCATCGTCGCTTAGTTAGT 60.202 52.381 0.00 0.00 0.00 2.24
2886 6833 2.534757 GCCATCGTCGCTTAGTTAGTTC 59.465 50.000 0.00 0.00 0.00 3.01
2887 6834 2.782192 CCATCGTCGCTTAGTTAGTTCG 59.218 50.000 0.00 0.00 0.00 3.95
2997 6946 5.845985 TGTGAGCTGAAAATTAGTTCGAG 57.154 39.130 0.00 0.00 0.00 4.04
2998 6947 5.297547 TGTGAGCTGAAAATTAGTTCGAGT 58.702 37.500 0.00 0.00 0.00 4.18
2999 6948 5.758296 TGTGAGCTGAAAATTAGTTCGAGTT 59.242 36.000 0.00 0.00 0.00 3.01
3025 6975 5.495926 TTCTCTCTCCAAAAAGAGCTCAT 57.504 39.130 17.77 0.00 42.15 2.90
3026 6976 5.495926 TCTCTCTCCAAAAAGAGCTCATT 57.504 39.130 17.77 7.57 42.15 2.57
3064 7014 9.762381 TTTTCCCACTTAATTAATAGGACATGT 57.238 29.630 14.48 0.00 0.00 3.21
3078 7031 4.104086 AGGACATGTGATCTCCTTGGTTA 58.896 43.478 1.15 0.00 29.41 2.85
3079 7032 4.163078 AGGACATGTGATCTCCTTGGTTAG 59.837 45.833 1.15 0.00 29.41 2.34
3080 7033 4.080863 GGACATGTGATCTCCTTGGTTAGT 60.081 45.833 1.15 0.00 0.00 2.24
3081 7034 5.491982 GACATGTGATCTCCTTGGTTAGTT 58.508 41.667 1.15 0.00 0.00 2.24
3082 7035 5.491982 ACATGTGATCTCCTTGGTTAGTTC 58.508 41.667 0.00 0.00 0.00 3.01
3083 7036 5.249393 ACATGTGATCTCCTTGGTTAGTTCT 59.751 40.000 0.00 0.00 0.00 3.01
3087 7040 3.040147 TCTCCTTGGTTAGTTCTTGCG 57.960 47.619 0.00 0.00 0.00 4.85
3089 7042 3.139077 CTCCTTGGTTAGTTCTTGCGTT 58.861 45.455 0.00 0.00 0.00 4.84
3090 7043 3.547746 TCCTTGGTTAGTTCTTGCGTTT 58.452 40.909 0.00 0.00 0.00 3.60
3091 7044 3.314080 TCCTTGGTTAGTTCTTGCGTTTG 59.686 43.478 0.00 0.00 0.00 2.93
3092 7045 3.314080 CCTTGGTTAGTTCTTGCGTTTGA 59.686 43.478 0.00 0.00 0.00 2.69
3093 7046 4.023193 CCTTGGTTAGTTCTTGCGTTTGAT 60.023 41.667 0.00 0.00 0.00 2.57
3094 7047 4.742438 TGGTTAGTTCTTGCGTTTGATC 57.258 40.909 0.00 0.00 0.00 2.92
3095 7048 4.385825 TGGTTAGTTCTTGCGTTTGATCT 58.614 39.130 0.00 0.00 0.00 2.75
3096 7049 4.819630 TGGTTAGTTCTTGCGTTTGATCTT 59.180 37.500 0.00 0.00 0.00 2.40
3097 7050 5.147162 GGTTAGTTCTTGCGTTTGATCTTG 58.853 41.667 0.00 0.00 0.00 3.02
3098 7051 3.273919 AGTTCTTGCGTTTGATCTTGC 57.726 42.857 0.00 0.00 0.00 4.01
3099 7052 1.971962 GTTCTTGCGTTTGATCTTGCG 59.028 47.619 0.00 0.00 0.00 4.85
3151 7107 0.521242 CTAGTTGCGTGCAATTCGGC 60.521 55.000 10.85 0.00 38.28 5.54
3195 7151 7.749539 AAAAACTGTACAATTTCAGGTTTCG 57.250 32.000 2.31 0.00 46.47 3.46
3201 7157 5.918011 TGTACAATTTCAGGTTTCGAAATGC 59.082 36.000 14.69 1.65 41.16 3.56
3202 7158 4.306600 ACAATTTCAGGTTTCGAAATGCC 58.693 39.130 14.69 11.50 41.16 4.40
3204 7160 4.806640 ATTTCAGGTTTCGAAATGCCAT 57.193 36.364 14.69 0.00 40.64 4.40
3208 7164 4.331968 TCAGGTTTCGAAATGCCATAACT 58.668 39.130 14.69 0.00 0.00 2.24
3218 7174 5.376854 AAATGCCATAACTATCCAATCGC 57.623 39.130 0.00 0.00 0.00 4.58
3219 7175 3.483808 TGCCATAACTATCCAATCGCA 57.516 42.857 0.00 0.00 0.00 5.10
3220 7176 4.019792 TGCCATAACTATCCAATCGCAT 57.980 40.909 0.00 0.00 0.00 4.73
3231 7187 3.950397 TCCAATCGCATACTTCAAACCT 58.050 40.909 0.00 0.00 0.00 3.50
3232 7188 5.092554 TCCAATCGCATACTTCAAACCTA 57.907 39.130 0.00 0.00 0.00 3.08
3234 7190 5.105106 TCCAATCGCATACTTCAAACCTAGA 60.105 40.000 0.00 0.00 0.00 2.43
3235 7191 5.235186 CCAATCGCATACTTCAAACCTAGAG 59.765 44.000 0.00 0.00 0.00 2.43
3236 7192 5.599999 ATCGCATACTTCAAACCTAGAGT 57.400 39.130 0.00 0.00 0.00 3.24
3237 7193 5.401531 TCGCATACTTCAAACCTAGAGTT 57.598 39.130 0.00 0.00 41.81 3.01
3238 7194 5.168569 TCGCATACTTCAAACCTAGAGTTG 58.831 41.667 0.00 0.00 39.19 3.16
3239 7195 4.201724 CGCATACTTCAAACCTAGAGTTGC 60.202 45.833 0.00 0.00 39.19 4.17
3240 7196 4.201724 GCATACTTCAAACCTAGAGTTGCG 60.202 45.833 0.00 0.00 39.19 4.85
3241 7197 2.143925 ACTTCAAACCTAGAGTTGCGC 58.856 47.619 0.00 0.00 39.19 6.09
3242 7198 2.224305 ACTTCAAACCTAGAGTTGCGCT 60.224 45.455 9.73 0.00 39.19 5.92
3243 7199 3.006537 ACTTCAAACCTAGAGTTGCGCTA 59.993 43.478 9.73 0.00 39.19 4.26
3244 7200 3.232213 TCAAACCTAGAGTTGCGCTAG 57.768 47.619 9.73 0.62 39.19 3.42
3245 7201 2.823747 TCAAACCTAGAGTTGCGCTAGA 59.176 45.455 9.73 0.00 39.19 2.43
3246 7202 3.257375 TCAAACCTAGAGTTGCGCTAGAA 59.743 43.478 9.73 0.00 39.19 2.10
3247 7203 4.081642 TCAAACCTAGAGTTGCGCTAGAAT 60.082 41.667 9.73 0.00 39.19 2.40
3248 7204 4.473477 AACCTAGAGTTGCGCTAGAATT 57.527 40.909 9.73 0.00 36.26 2.17
3249 7205 4.473477 ACCTAGAGTTGCGCTAGAATTT 57.527 40.909 9.73 0.00 36.26 1.82
3250 7206 4.833390 ACCTAGAGTTGCGCTAGAATTTT 58.167 39.130 9.73 0.00 36.26 1.82
3251 7207 5.246307 ACCTAGAGTTGCGCTAGAATTTTT 58.754 37.500 9.73 0.00 36.26 1.94
3275 7231 8.462143 TTTTTACGTGCAAATGTAGTTTCAAA 57.538 26.923 0.00 0.00 0.00 2.69
3276 7232 8.462143 TTTTACGTGCAAATGTAGTTTCAAAA 57.538 26.923 0.00 0.00 0.00 2.44
3277 7233 7.672351 TTACGTGCAAATGTAGTTTCAAAAG 57.328 32.000 0.00 0.00 0.00 2.27
3278 7234 5.040635 ACGTGCAAATGTAGTTTCAAAAGG 58.959 37.500 0.00 0.00 0.00 3.11
3279 7235 5.040635 CGTGCAAATGTAGTTTCAAAAGGT 58.959 37.500 0.00 0.00 0.00 3.50
3280 7236 5.051774 CGTGCAAATGTAGTTTCAAAAGGTG 60.052 40.000 0.00 0.00 0.00 4.00
3281 7237 4.808364 TGCAAATGTAGTTTCAAAAGGTGC 59.192 37.500 0.00 0.00 0.00 5.01
3282 7238 4.808364 GCAAATGTAGTTTCAAAAGGTGCA 59.192 37.500 0.00 0.00 0.00 4.57
3283 7239 5.050837 GCAAATGTAGTTTCAAAAGGTGCAG 60.051 40.000 0.00 0.00 0.00 4.41
3284 7240 3.708563 TGTAGTTTCAAAAGGTGCAGC 57.291 42.857 8.11 8.11 0.00 5.25
3285 7241 3.287222 TGTAGTTTCAAAAGGTGCAGCT 58.713 40.909 13.85 13.85 0.00 4.24
3286 7242 2.877043 AGTTTCAAAAGGTGCAGCTG 57.123 45.000 20.97 10.11 0.00 4.24
3287 7243 1.202452 AGTTTCAAAAGGTGCAGCTGC 60.202 47.619 31.89 31.89 42.50 5.25
3298 7254 3.740384 GCAGCTGCAACAAAATTGC 57.260 47.368 33.36 1.56 45.11 3.56
3309 7265 6.768029 GCAACAAAATTGCACATCTCTTAA 57.232 33.333 6.75 0.00 44.34 1.85
3353 7316 7.847487 TGAGTATATACGCAACTACAAAATGC 58.153 34.615 15.87 0.00 33.11 3.56
3364 7386 9.877137 CGCAACTACAAAATGCTATAATGATAA 57.123 29.630 0.00 0.00 37.92 1.75
3437 7473 5.818678 AGTCCATTAACACAGTGTAGGAA 57.181 39.130 6.63 2.38 0.00 3.36
3450 7486 1.079503 GTAGGAAGGTGAGCGCAAAG 58.920 55.000 11.47 0.00 0.00 2.77
3454 7490 1.067060 GGAAGGTGAGCGCAAAGTTTT 59.933 47.619 11.47 0.00 0.00 2.43
3458 7494 3.146066 AGGTGAGCGCAAAGTTTTCATA 58.854 40.909 11.47 0.00 0.00 2.15
3463 7499 6.751888 GGTGAGCGCAAAGTTTTCATATTATT 59.248 34.615 11.47 0.00 0.00 1.40
3465 7501 6.972328 TGAGCGCAAAGTTTTCATATTATTCC 59.028 34.615 11.47 0.00 0.00 3.01
3495 7531 6.866248 GCATAGCTAGAACTTACTCTCATTCC 59.134 42.308 0.00 0.00 0.00 3.01
3504 7540 2.376808 ACTCTCATTCCACGCAAGAG 57.623 50.000 0.00 0.00 43.62 2.85
3532 7568 9.710979 TGTCACTTAAAAAGTTGATTTAGTTCG 57.289 29.630 0.00 0.00 40.46 3.95
3581 7618 2.280628 CGCATTTCCAAGTACTCCCTC 58.719 52.381 0.00 0.00 0.00 4.30
3582 7619 2.093447 CGCATTTCCAAGTACTCCCTCT 60.093 50.000 0.00 0.00 0.00 3.69
3587 7624 4.338795 TTCCAAGTACTCCCTCTGATCT 57.661 45.455 0.00 0.00 0.00 2.75
3592 7629 7.406916 TCCAAGTACTCCCTCTGATCTATATC 58.593 42.308 0.00 0.00 0.00 1.63
3597 7634 7.888021 AGTACTCCCTCTGATCTATATCACTTG 59.112 40.741 0.00 0.00 37.20 3.16
3608 7645 6.647212 TCTATATCACTTGTTGCTCAAACG 57.353 37.500 0.00 0.00 42.10 3.60
3620 7657 7.197071 TGTTGCTCAAACGACAAGTAATATT 57.803 32.000 0.00 0.00 42.10 1.28
3624 7661 8.039603 TGCTCAAACGACAAGTAATATTGATT 57.960 30.769 0.00 0.00 34.20 2.57
3625 7662 7.962373 TGCTCAAACGACAAGTAATATTGATTG 59.038 33.333 11.05 11.05 34.20 2.67
3629 7666 8.450964 CAAACGACAAGTAATATTGATTGGAGT 58.549 33.333 15.05 11.96 34.20 3.85
3632 7669 7.987458 ACGACAAGTAATATTGATTGGAGTGAT 59.013 33.333 15.05 0.00 34.20 3.06
3709 7746 3.774766 TGGCTTAAGAATCTCCACTAGCA 59.225 43.478 6.67 0.00 0.00 3.49
3710 7747 4.141846 TGGCTTAAGAATCTCCACTAGCAG 60.142 45.833 6.67 0.00 0.00 4.24
3726 7763 1.617850 AGCAGAGAGAACTCCACACAG 59.382 52.381 0.00 0.00 43.53 3.66
3814 9760 6.189859 TCCATTACCAAAGAGAAATCTGCAT 58.810 36.000 0.00 0.00 0.00 3.96
3854 9800 4.801891 TCTGGTAAACGGTATATCGATGC 58.198 43.478 13.38 4.08 0.00 3.91
3858 9804 5.106197 TGGTAAACGGTATATCGATGCGTAT 60.106 40.000 13.38 0.00 0.00 3.06
3859 9805 5.801947 GGTAAACGGTATATCGATGCGTATT 59.198 40.000 13.38 0.00 0.00 1.89
3860 9806 5.756950 AAACGGTATATCGATGCGTATTG 57.243 39.130 13.38 0.00 0.00 1.90
3861 9807 3.176708 ACGGTATATCGATGCGTATTGC 58.823 45.455 13.38 0.00 46.70 3.56
3877 9823 3.230990 GCACAGGGCGGGGTTTTT 61.231 61.111 0.00 0.00 0.00 1.94
3878 9824 1.904378 GCACAGGGCGGGGTTTTTA 60.904 57.895 0.00 0.00 0.00 1.52
3879 9825 1.465200 GCACAGGGCGGGGTTTTTAA 61.465 55.000 0.00 0.00 0.00 1.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 9.033481 CCGTAACTCCGATTTAAACATGTTATA 57.967 33.333 12.39 4.12 0.00 0.98
4 5 6.873076 ACCGTAACTCCGATTTAAACATGTTA 59.127 34.615 12.39 0.00 0.00 2.41
5 6 5.702209 ACCGTAACTCCGATTTAAACATGTT 59.298 36.000 4.92 4.92 0.00 2.71
8 9 6.806388 AAACCGTAACTCCGATTTAAACAT 57.194 33.333 0.00 0.00 0.00 2.71
9 10 7.721286 TTAAACCGTAACTCCGATTTAAACA 57.279 32.000 0.00 0.00 0.00 2.83
10 11 9.106286 CTTTTAAACCGTAACTCCGATTTAAAC 57.894 33.333 5.39 0.00 33.53 2.01
11 12 9.050601 TCTTTTAAACCGTAACTCCGATTTAAA 57.949 29.630 2.42 2.42 32.51 1.52
13 14 8.776376 ATCTTTTAAACCGTAACTCCGATTTA 57.224 30.769 0.00 0.00 0.00 1.40
14 15 7.677454 ATCTTTTAAACCGTAACTCCGATTT 57.323 32.000 0.00 0.00 0.00 2.17
15 16 8.823818 CATATCTTTTAAACCGTAACTCCGATT 58.176 33.333 0.00 0.00 0.00 3.34
16 17 7.440255 CCATATCTTTTAAACCGTAACTCCGAT 59.560 37.037 0.00 0.00 0.00 4.18
17 18 6.757947 CCATATCTTTTAAACCGTAACTCCGA 59.242 38.462 0.00 0.00 0.00 4.55
18 19 6.757947 TCCATATCTTTTAAACCGTAACTCCG 59.242 38.462 0.00 0.00 0.00 4.63
19 20 8.557029 CATCCATATCTTTTAAACCGTAACTCC 58.443 37.037 0.00 0.00 0.00 3.85
20 21 9.321562 TCATCCATATCTTTTAAACCGTAACTC 57.678 33.333 0.00 0.00 0.00 3.01
21 22 9.847224 ATCATCCATATCTTTTAAACCGTAACT 57.153 29.630 0.00 0.00 0.00 2.24
40 41 9.947669 CAAACAAATGCTTTTTAAAATCATCCA 57.052 25.926 7.14 3.95 0.00 3.41
55 56 9.807649 GGATCATATTTAAGTCAAACAAATGCT 57.192 29.630 0.00 0.00 0.00 3.79
56 57 8.745837 CGGATCATATTTAAGTCAAACAAATGC 58.254 33.333 0.00 0.00 0.00 3.56
57 58 9.787532 ACGGATCATATTTAAGTCAAACAAATG 57.212 29.630 0.00 0.00 0.00 2.32
58 59 9.787532 CACGGATCATATTTAAGTCAAACAAAT 57.212 29.630 0.00 0.00 0.00 2.32
59 60 8.240682 CCACGGATCATATTTAAGTCAAACAAA 58.759 33.333 0.00 0.00 0.00 2.83
60 61 7.608376 TCCACGGATCATATTTAAGTCAAACAA 59.392 33.333 0.00 0.00 0.00 2.83
61 62 7.106890 TCCACGGATCATATTTAAGTCAAACA 58.893 34.615 0.00 0.00 0.00 2.83
62 63 7.548196 TCCACGGATCATATTTAAGTCAAAC 57.452 36.000 0.00 0.00 0.00 2.93
63 64 7.990314 TCATCCACGGATCATATTTAAGTCAAA 59.010 33.333 0.00 0.00 31.62 2.69
64 65 7.505258 TCATCCACGGATCATATTTAAGTCAA 58.495 34.615 0.00 0.00 31.62 3.18
65 66 7.061566 TCATCCACGGATCATATTTAAGTCA 57.938 36.000 0.00 0.00 31.62 3.41
66 67 7.962964 TTCATCCACGGATCATATTTAAGTC 57.037 36.000 0.00 0.00 31.62 3.01
67 68 8.924511 AATTCATCCACGGATCATATTTAAGT 57.075 30.769 0.00 0.00 31.62 2.24
69 70 9.226606 GGTAATTCATCCACGGATCATATTTAA 57.773 33.333 0.00 0.00 31.62 1.52
70 71 8.602424 AGGTAATTCATCCACGGATCATATTTA 58.398 33.333 0.00 0.00 31.62 1.40
71 72 7.461749 AGGTAATTCATCCACGGATCATATTT 58.538 34.615 0.00 0.00 31.62 1.40
72 73 7.020827 AGGTAATTCATCCACGGATCATATT 57.979 36.000 0.00 0.00 31.62 1.28
73 74 6.627087 AGGTAATTCATCCACGGATCATAT 57.373 37.500 0.00 0.00 31.62 1.78
74 75 7.547697 TTAGGTAATTCATCCACGGATCATA 57.452 36.000 0.00 0.00 31.62 2.15
75 76 4.982241 AGGTAATTCATCCACGGATCAT 57.018 40.909 0.00 0.00 31.62 2.45
76 77 5.880164 TTAGGTAATTCATCCACGGATCA 57.120 39.130 0.00 0.00 31.62 2.92
77 78 6.540914 TGTTTTAGGTAATTCATCCACGGATC 59.459 38.462 0.00 0.00 31.62 3.36
78 79 6.419791 TGTTTTAGGTAATTCATCCACGGAT 58.580 36.000 0.00 0.00 34.81 4.18
79 80 5.806818 TGTTTTAGGTAATTCATCCACGGA 58.193 37.500 0.00 0.00 0.00 4.69
80 81 6.317642 TGATGTTTTAGGTAATTCATCCACGG 59.682 38.462 0.00 0.00 33.20 4.94
81 82 7.315247 TGATGTTTTAGGTAATTCATCCACG 57.685 36.000 0.00 0.00 33.20 4.94
82 83 7.201821 CCCTGATGTTTTAGGTAATTCATCCAC 60.202 40.741 0.00 0.00 33.20 4.02
83 84 6.833416 CCCTGATGTTTTAGGTAATTCATCCA 59.167 38.462 0.00 0.00 33.20 3.41
84 85 6.265422 CCCCTGATGTTTTAGGTAATTCATCC 59.735 42.308 0.00 0.00 33.20 3.51
85 86 6.265422 CCCCCTGATGTTTTAGGTAATTCATC 59.735 42.308 0.00 0.00 34.28 2.92
86 87 6.136155 CCCCCTGATGTTTTAGGTAATTCAT 58.864 40.000 0.00 0.00 31.99 2.57
87 88 5.515106 CCCCCTGATGTTTTAGGTAATTCA 58.485 41.667 0.00 0.00 31.99 2.57
122 123 9.793259 AGTCACACCCGAATCATTATTTTATAT 57.207 29.630 0.00 0.00 0.00 0.86
123 124 9.621629 AAGTCACACCCGAATCATTATTTTATA 57.378 29.630 0.00 0.00 0.00 0.98
124 125 8.519799 AAGTCACACCCGAATCATTATTTTAT 57.480 30.769 0.00 0.00 0.00 1.40
125 126 7.931578 AAGTCACACCCGAATCATTATTTTA 57.068 32.000 0.00 0.00 0.00 1.52
126 127 6.834168 AAGTCACACCCGAATCATTATTTT 57.166 33.333 0.00 0.00 0.00 1.82
127 128 7.931578 TTAAGTCACACCCGAATCATTATTT 57.068 32.000 0.00 0.00 0.00 1.40
128 129 7.931578 TTTAAGTCACACCCGAATCATTATT 57.068 32.000 0.00 0.00 0.00 1.40
129 130 7.228706 GGATTTAAGTCACACCCGAATCATTAT 59.771 37.037 0.03 0.00 0.00 1.28
130 131 6.540914 GGATTTAAGTCACACCCGAATCATTA 59.459 38.462 0.03 0.00 0.00 1.90
131 132 5.357032 GGATTTAAGTCACACCCGAATCATT 59.643 40.000 0.03 0.00 0.00 2.57
132 133 4.881850 GGATTTAAGTCACACCCGAATCAT 59.118 41.667 0.03 0.00 0.00 2.45
133 134 4.258543 GGATTTAAGTCACACCCGAATCA 58.741 43.478 0.03 0.00 0.00 2.57
134 135 3.308866 CGGATTTAAGTCACACCCGAATC 59.691 47.826 0.03 0.00 37.87 2.52
135 136 3.267483 CGGATTTAAGTCACACCCGAAT 58.733 45.455 0.03 0.00 37.87 3.34
136 137 2.613474 CCGGATTTAAGTCACACCCGAA 60.613 50.000 0.00 0.00 37.87 4.30
137 138 1.066716 CCGGATTTAAGTCACACCCGA 60.067 52.381 0.00 0.00 37.87 5.14
138 139 1.066716 TCCGGATTTAAGTCACACCCG 60.067 52.381 0.00 0.00 35.68 5.28
139 140 2.353323 GTCCGGATTTAAGTCACACCC 58.647 52.381 7.81 0.00 0.00 4.61
140 141 1.997606 CGTCCGGATTTAAGTCACACC 59.002 52.381 7.81 0.00 0.00 4.16
141 142 1.997606 CCGTCCGGATTTAAGTCACAC 59.002 52.381 7.81 0.00 37.50 3.82
142 143 1.673626 GCCGTCCGGATTTAAGTCACA 60.674 52.381 7.81 0.00 37.50 3.58
143 144 1.004595 GCCGTCCGGATTTAAGTCAC 58.995 55.000 7.81 0.00 37.50 3.67
144 145 0.458889 CGCCGTCCGGATTTAAGTCA 60.459 55.000 7.81 0.00 37.50 3.41
145 146 2.294728 CGCCGTCCGGATTTAAGTC 58.705 57.895 7.81 0.00 37.50 3.01
146 147 4.507879 CGCCGTCCGGATTTAAGT 57.492 55.556 7.81 0.00 37.50 2.24
155 156 2.744709 AAATCAACCCGCCGTCCG 60.745 61.111 0.00 0.00 0.00 4.79
156 157 1.238625 TTGAAATCAACCCGCCGTCC 61.239 55.000 0.00 0.00 0.00 4.79
157 158 0.168128 CTTGAAATCAACCCGCCGTC 59.832 55.000 0.00 0.00 0.00 4.79
158 159 0.250553 TCTTGAAATCAACCCGCCGT 60.251 50.000 0.00 0.00 0.00 5.68
159 160 0.878416 TTCTTGAAATCAACCCGCCG 59.122 50.000 0.00 0.00 0.00 6.46
160 161 3.005367 TCTTTTCTTGAAATCAACCCGCC 59.995 43.478 0.00 0.00 0.00 6.13
161 162 3.981416 GTCTTTTCTTGAAATCAACCCGC 59.019 43.478 0.00 0.00 0.00 6.13
162 163 5.008613 TCTGTCTTTTCTTGAAATCAACCCG 59.991 40.000 0.00 0.00 0.00 5.28
163 164 6.263168 TCTCTGTCTTTTCTTGAAATCAACCC 59.737 38.462 0.00 0.00 0.00 4.11
164 165 7.012799 AGTCTCTGTCTTTTCTTGAAATCAACC 59.987 37.037 0.00 0.00 0.00 3.77
165 166 7.924940 AGTCTCTGTCTTTTCTTGAAATCAAC 58.075 34.615 0.00 0.00 0.00 3.18
166 167 8.511604 AAGTCTCTGTCTTTTCTTGAAATCAA 57.488 30.769 0.00 0.00 0.00 2.57
167 168 8.511604 AAAGTCTCTGTCTTTTCTTGAAATCA 57.488 30.769 0.00 0.00 32.14 2.57
168 169 9.230932 CAAAAGTCTCTGTCTTTTCTTGAAATC 57.769 33.333 0.00 0.00 41.30 2.17
169 170 8.743714 ACAAAAGTCTCTGTCTTTTCTTGAAAT 58.256 29.630 0.00 0.00 41.30 2.17
170 171 8.023128 CACAAAAGTCTCTGTCTTTTCTTGAAA 58.977 33.333 0.00 0.00 41.30 2.69
171 172 7.174946 ACACAAAAGTCTCTGTCTTTTCTTGAA 59.825 33.333 12.29 0.00 41.30 2.69
172 173 6.655003 ACACAAAAGTCTCTGTCTTTTCTTGA 59.345 34.615 12.29 0.00 41.30 3.02
173 174 6.846350 ACACAAAAGTCTCTGTCTTTTCTTG 58.154 36.000 0.00 0.00 41.30 3.02
174 175 8.561738 TTACACAAAAGTCTCTGTCTTTTCTT 57.438 30.769 0.00 0.00 41.30 2.52
175 176 8.561738 TTTACACAAAAGTCTCTGTCTTTTCT 57.438 30.769 0.00 0.00 41.30 2.52
176 177 9.788960 ATTTTACACAAAAGTCTCTGTCTTTTC 57.211 29.630 0.00 0.00 41.30 2.29
179 180 8.548721 CGTATTTTACACAAAAGTCTCTGTCTT 58.451 33.333 0.00 0.00 37.08 3.01
180 181 7.924412 TCGTATTTTACACAAAAGTCTCTGTCT 59.076 33.333 0.00 0.00 37.08 3.41
181 182 8.068893 TCGTATTTTACACAAAAGTCTCTGTC 57.931 34.615 0.00 0.00 37.08 3.51
182 183 8.428186 TTCGTATTTTACACAAAAGTCTCTGT 57.572 30.769 0.00 0.00 37.08 3.41
183 184 9.710979 TTTTCGTATTTTACACAAAAGTCTCTG 57.289 29.630 0.00 0.00 37.08 3.35
220 221 4.261114 CCGCGGTCCTGTTTTAAGTTAAAA 60.261 41.667 19.50 15.29 35.45 1.52
221 222 3.250521 CCGCGGTCCTGTTTTAAGTTAAA 59.749 43.478 19.50 3.88 0.00 1.52
222 223 2.807392 CCGCGGTCCTGTTTTAAGTTAA 59.193 45.455 19.50 0.00 0.00 2.01
223 224 2.415776 CCGCGGTCCTGTTTTAAGTTA 58.584 47.619 19.50 0.00 0.00 2.24
224 225 1.232119 CCGCGGTCCTGTTTTAAGTT 58.768 50.000 19.50 0.00 0.00 2.66
225 226 0.604511 CCCGCGGTCCTGTTTTAAGT 60.605 55.000 26.12 0.00 0.00 2.24
226 227 0.604511 ACCCGCGGTCCTGTTTTAAG 60.605 55.000 26.12 6.21 0.00 1.85
227 228 0.179023 AACCCGCGGTCCTGTTTTAA 60.179 50.000 26.12 0.00 33.12 1.52
228 229 0.885596 CAACCCGCGGTCCTGTTTTA 60.886 55.000 26.12 0.00 33.12 1.52
229 230 2.190841 CAACCCGCGGTCCTGTTTT 61.191 57.895 26.12 2.08 33.12 2.43
230 231 2.593436 CAACCCGCGGTCCTGTTT 60.593 61.111 26.12 3.96 33.12 2.83
231 232 2.406002 ATTCAACCCGCGGTCCTGTT 62.406 55.000 26.12 17.88 33.12 3.16
232 233 2.406002 AATTCAACCCGCGGTCCTGT 62.406 55.000 26.12 12.13 33.12 4.00
233 234 1.644786 GAATTCAACCCGCGGTCCTG 61.645 60.000 26.12 17.56 33.12 3.86
234 235 1.376812 GAATTCAACCCGCGGTCCT 60.377 57.895 26.12 4.48 33.12 3.85
235 236 1.366854 GAGAATTCAACCCGCGGTCC 61.367 60.000 26.12 3.59 33.12 4.46
236 237 0.391263 AGAGAATTCAACCCGCGGTC 60.391 55.000 26.12 13.20 33.12 4.79
237 238 0.673644 CAGAGAATTCAACCCGCGGT 60.674 55.000 26.12 9.63 37.65 5.68
238 239 0.391130 TCAGAGAATTCAACCCGCGG 60.391 55.000 21.04 21.04 0.00 6.46
239 240 1.438651 TTCAGAGAATTCAACCCGCG 58.561 50.000 8.44 0.00 0.00 6.46
240 241 4.876107 TCTATTTCAGAGAATTCAACCCGC 59.124 41.667 8.44 0.00 0.00 6.13
253 254 7.808279 TTTAGGAAAGTCCCTCTATTTCAGA 57.192 36.000 0.00 0.00 37.19 3.27
254 255 8.863872 TTTTTAGGAAAGTCCCTCTATTTCAG 57.136 34.615 0.00 0.00 37.19 3.02
276 277 1.529226 TCGTCCGTCATGGCATTTTT 58.471 45.000 0.00 0.00 37.80 1.94
277 278 1.529226 TTCGTCCGTCATGGCATTTT 58.471 45.000 0.00 0.00 37.80 1.82
278 279 1.529226 TTTCGTCCGTCATGGCATTT 58.471 45.000 0.00 0.00 37.80 2.32
279 280 1.750193 ATTTCGTCCGTCATGGCATT 58.250 45.000 0.00 0.00 37.80 3.56
280 281 2.613026 TATTTCGTCCGTCATGGCAT 57.387 45.000 0.00 0.00 37.80 4.40
281 282 2.388310 TTATTTCGTCCGTCATGGCA 57.612 45.000 0.00 0.00 37.80 4.92
282 283 2.223180 GGTTTATTTCGTCCGTCATGGC 60.223 50.000 0.00 0.00 37.80 4.40
283 284 2.353579 GGGTTTATTTCGTCCGTCATGG 59.646 50.000 0.00 0.00 40.09 3.66
284 285 3.004171 TGGGTTTATTTCGTCCGTCATG 58.996 45.455 0.00 0.00 0.00 3.07
285 286 3.337694 TGGGTTTATTTCGTCCGTCAT 57.662 42.857 0.00 0.00 0.00 3.06
286 287 2.835580 TGGGTTTATTTCGTCCGTCA 57.164 45.000 0.00 0.00 0.00 4.35
287 288 4.690184 AATTGGGTTTATTTCGTCCGTC 57.310 40.909 0.00 0.00 0.00 4.79
288 289 5.706833 AGTAAATTGGGTTTATTTCGTCCGT 59.293 36.000 0.00 0.00 34.93 4.69
289 290 6.185852 AGTAAATTGGGTTTATTTCGTCCG 57.814 37.500 0.00 0.00 34.93 4.79
319 320 9.391006 CCTGTTTAGCATGTTATCTTTACCTAA 57.609 33.333 0.00 0.00 0.00 2.69
320 321 8.545472 ACCTGTTTAGCATGTTATCTTTACCTA 58.455 33.333 0.00 0.00 0.00 3.08
321 322 7.402862 ACCTGTTTAGCATGTTATCTTTACCT 58.597 34.615 0.00 0.00 0.00 3.08
322 323 7.625828 ACCTGTTTAGCATGTTATCTTTACC 57.374 36.000 0.00 0.00 0.00 2.85
323 324 9.908152 AAAACCTGTTTAGCATGTTATCTTTAC 57.092 29.630 0.00 0.00 35.40 2.01
324 325 9.906660 CAAAACCTGTTTAGCATGTTATCTTTA 57.093 29.630 0.00 0.00 35.40 1.85
325 326 8.637986 TCAAAACCTGTTTAGCATGTTATCTTT 58.362 29.630 0.00 0.00 35.40 2.52
326 327 8.177119 TCAAAACCTGTTTAGCATGTTATCTT 57.823 30.769 0.00 0.00 35.40 2.40
327 328 7.094205 CCTCAAAACCTGTTTAGCATGTTATCT 60.094 37.037 0.00 0.00 35.40 1.98
328 329 7.029563 CCTCAAAACCTGTTTAGCATGTTATC 58.970 38.462 0.00 0.00 35.40 1.75
353 354 5.878116 TGCCACTAGACACCAATATTGTAAC 59.122 40.000 14.25 3.48 0.00 2.50
355 356 5.685520 TGCCACTAGACACCAATATTGTA 57.314 39.130 14.25 0.00 0.00 2.41
383 384 1.471501 CGCTCTGTTAGGCACATGCTA 60.472 52.381 3.48 0.00 41.70 3.49
390 391 1.211969 GTCGTCGCTCTGTTAGGCA 59.788 57.895 0.00 0.00 0.00 4.75
423 424 2.031157 CGGTTTTGCCACTAGGAGTTTG 60.031 50.000 0.00 0.00 36.89 2.93
528 1046 0.314935 CAACATGGCGTCAAAGGCTT 59.685 50.000 0.00 0.00 37.59 4.35
610 1129 3.819368 AGGGTTTTTCAAAAAGCATGGG 58.181 40.909 22.79 0.00 31.70 4.00
672 1527 0.616371 CCATGTCGACCCTAAACCCA 59.384 55.000 14.12 0.00 0.00 4.51
718 1573 6.184789 TGTTTTTACTCCTTGTGAACTCCTT 58.815 36.000 0.00 0.00 0.00 3.36
731 1586 4.466827 TCCTCCCTGTTTGTTTTTACTCC 58.533 43.478 0.00 0.00 0.00 3.85
732 1587 5.131067 ACTCCTCCCTGTTTGTTTTTACTC 58.869 41.667 0.00 0.00 0.00 2.59
733 1588 5.125367 ACTCCTCCCTGTTTGTTTTTACT 57.875 39.130 0.00 0.00 0.00 2.24
734 1589 5.358725 TGAACTCCTCCCTGTTTGTTTTTAC 59.641 40.000 0.00 0.00 0.00 2.01
769 1625 4.467107 GAGAGGGGGCGGGAGAGT 62.467 72.222 0.00 0.00 0.00 3.24
782 1638 2.499693 GACTTTGGAGAAGGGGAGAGAG 59.500 54.545 0.00 0.00 0.00 3.20
786 1642 1.362224 TGGACTTTGGAGAAGGGGAG 58.638 55.000 0.00 0.00 0.00 4.30
817 1973 4.494526 GCGTTTGTTACAAAAGACGGAGAA 60.495 41.667 23.51 0.00 0.00 2.87
818 1974 3.001533 GCGTTTGTTACAAAAGACGGAGA 59.998 43.478 23.51 0.00 0.00 3.71
819 1975 3.242478 TGCGTTTGTTACAAAAGACGGAG 60.242 43.478 23.51 7.06 0.00 4.63
820 1976 2.676839 TGCGTTTGTTACAAAAGACGGA 59.323 40.909 23.51 16.87 0.00 4.69
842 2080 1.321743 GACGAGTGCTACAGATTTGCG 59.678 52.381 0.00 0.00 0.00 4.85
884 2122 0.658897 TGTTTCTGGTTTTCCGACGC 59.341 50.000 0.00 0.00 44.36 5.19
922 2160 1.338020 GTTGCTGGTTTCTTGGAGGTG 59.662 52.381 0.00 0.00 0.00 4.00
931 2169 3.057245 GGAGGAGATTTGTTGCTGGTTTC 60.057 47.826 0.00 0.00 0.00 2.78
946 2184 2.044352 TGGCGATCGTGGAGGAGA 60.044 61.111 17.81 0.00 0.00 3.71
948 2186 3.838271 GCTGGCGATCGTGGAGGA 61.838 66.667 17.81 0.00 0.00 3.71
1002 2244 2.824041 CACAGTGTATGGGCGCCC 60.824 66.667 39.40 39.40 0.00 6.13
1375 2619 6.392625 AGCTAGATCGCATCTACTAAACAA 57.607 37.500 0.00 0.00 40.76 2.83
1399 4060 7.444629 TCGAGTAACTAAGTGTACACTGATT 57.555 36.000 28.55 22.45 41.58 2.57
1402 4063 6.128090 TGGATCGAGTAACTAAGTGTACACTG 60.128 42.308 28.55 19.01 41.58 3.66
1406 4076 7.972277 TGAAATGGATCGAGTAACTAAGTGTAC 59.028 37.037 0.00 0.00 0.00 2.90
1407 4077 8.058667 TGAAATGGATCGAGTAACTAAGTGTA 57.941 34.615 0.00 0.00 0.00 2.90
1408 4078 6.931838 TGAAATGGATCGAGTAACTAAGTGT 58.068 36.000 0.00 0.00 0.00 3.55
1409 4079 8.425577 AATGAAATGGATCGAGTAACTAAGTG 57.574 34.615 0.00 0.00 0.00 3.16
1410 4080 7.711339 GGAATGAAATGGATCGAGTAACTAAGT 59.289 37.037 0.00 0.00 0.00 2.24
1417 4087 6.591001 TCAATGGAATGAAATGGATCGAGTA 58.409 36.000 0.00 0.00 0.00 2.59
1419 4089 5.530171 ACTCAATGGAATGAAATGGATCGAG 59.470 40.000 0.00 0.00 0.00 4.04
1430 4100 3.699413 TGCATGGAACTCAATGGAATGA 58.301 40.909 0.00 0.00 0.00 2.57
1467 4137 2.377869 CCAGGCCCTGAGATTATCCAAT 59.622 50.000 13.74 0.00 32.44 3.16
1469 4139 1.061424 TCCAGGCCCTGAGATTATCCA 60.061 52.381 13.74 0.00 32.44 3.41
1470 4140 1.734655 TCCAGGCCCTGAGATTATCC 58.265 55.000 13.74 0.00 32.44 2.59
1471 4141 2.617532 GCATCCAGGCCCTGAGATTATC 60.618 54.545 13.74 2.05 32.44 1.75
1472 4142 1.353694 GCATCCAGGCCCTGAGATTAT 59.646 52.381 13.74 0.00 32.44 1.28
1473 4143 0.767375 GCATCCAGGCCCTGAGATTA 59.233 55.000 13.74 0.00 32.44 1.75
1474 4144 0.992431 AGCATCCAGGCCCTGAGATT 60.992 55.000 13.74 0.00 32.44 2.40
1475 4145 1.385631 AGCATCCAGGCCCTGAGAT 60.386 57.895 13.74 10.50 32.44 2.75
1731 5377 0.690762 TGTTGGTGTAGGAGAAGCCC 59.309 55.000 0.00 0.00 37.37 5.19
1770 5416 1.021202 CAGTGAGGTTGTCGCCAAAA 58.979 50.000 0.00 0.00 36.18 2.44
1829 5496 6.494666 AATGCCATGAAAGGAATGATGATT 57.505 33.333 0.00 0.00 0.00 2.57
1830 5497 7.507956 TCTTAATGCCATGAAAGGAATGATGAT 59.492 33.333 0.00 0.00 0.00 2.45
1860 5540 7.094890 GCAAGATGAGATCCGATTAATTGTCAT 60.095 37.037 6.33 6.33 0.00 3.06
1864 5544 6.798315 AGCAAGATGAGATCCGATTAATTG 57.202 37.500 0.00 0.00 0.00 2.32
1873 5553 4.005650 TGTCACAAAGCAAGATGAGATCC 58.994 43.478 0.00 0.00 0.00 3.36
1879 5559 1.068055 GGGCTGTCACAAAGCAAGATG 60.068 52.381 0.00 0.00 42.69 2.90
2058 5844 1.065126 CAGGATCCCCTTGAGGTTGAC 60.065 57.143 8.55 0.00 42.02 3.18
2147 6025 0.760945 AGATCCCATCCGAGACCACC 60.761 60.000 0.00 0.00 0.00 4.61
2159 6037 2.363276 ACGGCGGTGTAGATCCCA 60.363 61.111 13.24 0.00 0.00 4.37
2230 6144 1.270094 TGAAGAAGTCGTTCCATGCGT 60.270 47.619 0.00 0.00 32.48 5.24
2882 6829 2.038557 AGTGGGTGCTAATGAACGAACT 59.961 45.455 0.00 0.00 0.00 3.01
2883 6830 2.159627 CAGTGGGTGCTAATGAACGAAC 59.840 50.000 0.00 0.00 0.00 3.95
2884 6831 2.422597 CAGTGGGTGCTAATGAACGAA 58.577 47.619 0.00 0.00 0.00 3.85
2954 6903 6.992123 TCACAAGTTTTGAGCTCTAATCTGAA 59.008 34.615 18.20 0.00 0.00 3.02
3005 6955 5.584251 GGTAATGAGCTCTTTTTGGAGAGAG 59.416 44.000 18.84 0.00 44.78 3.20
3009 6959 5.006386 ACAGGTAATGAGCTCTTTTTGGAG 58.994 41.667 18.84 9.21 36.50 3.86
3025 6975 3.117663 AGTGGGAAAAGCTCAACAGGTAA 60.118 43.478 0.00 0.00 0.00 2.85
3026 6976 2.441750 AGTGGGAAAAGCTCAACAGGTA 59.558 45.455 0.00 0.00 0.00 3.08
3042 6992 8.924511 ATCACATGTCCTATTAATTAAGTGGG 57.075 34.615 15.16 11.29 0.00 4.61
3064 7014 4.579869 GCAAGAACTAACCAAGGAGATCA 58.420 43.478 0.00 0.00 0.00 2.92
3078 7031 2.349817 CGCAAGATCAAACGCAAGAACT 60.350 45.455 0.00 0.00 40.57 3.01
3079 7032 1.971962 CGCAAGATCAAACGCAAGAAC 59.028 47.619 0.00 0.00 40.57 3.01
3080 7033 1.601903 ACGCAAGATCAAACGCAAGAA 59.398 42.857 0.00 0.00 41.24 2.52
3081 7034 1.225855 ACGCAAGATCAAACGCAAGA 58.774 45.000 0.00 0.00 41.24 3.02
3082 7035 2.036556 AACGCAAGATCAAACGCAAG 57.963 45.000 0.00 0.00 43.62 4.01
3083 7036 2.483583 AAACGCAAGATCAAACGCAA 57.516 40.000 0.00 0.00 43.62 4.85
3087 7040 5.694674 TCAAACAAAACGCAAGATCAAAC 57.305 34.783 0.00 0.00 43.62 2.93
3089 7042 5.830912 AGATCAAACAAAACGCAAGATCAA 58.169 33.333 0.00 0.00 43.62 2.57
3090 7043 5.437289 AGATCAAACAAAACGCAAGATCA 57.563 34.783 0.00 0.00 43.62 2.92
3091 7044 5.387752 GCAAGATCAAACAAAACGCAAGATC 60.388 40.000 0.00 0.00 43.62 2.75
3092 7045 4.445385 GCAAGATCAAACAAAACGCAAGAT 59.555 37.500 0.00 0.00 43.62 2.40
3093 7046 3.796178 GCAAGATCAAACAAAACGCAAGA 59.204 39.130 0.00 0.00 43.62 3.02
3094 7047 3.360956 CGCAAGATCAAACAAAACGCAAG 60.361 43.478 0.00 0.00 43.37 4.01
3095 7048 2.533535 CGCAAGATCAAACAAAACGCAA 59.466 40.909 0.00 0.00 43.02 4.85
3096 7049 2.115595 CGCAAGATCAAACAAAACGCA 58.884 42.857 0.00 0.00 43.02 5.24
3097 7050 2.116366 ACGCAAGATCAAACAAAACGC 58.884 42.857 0.00 0.00 43.62 4.84
3098 7051 4.264145 TGAAACGCAAGATCAAACAAAACG 59.736 37.500 0.00 0.00 43.62 3.60
3099 7052 5.694674 TGAAACGCAAGATCAAACAAAAC 57.305 34.783 0.00 0.00 43.62 2.43
3171 7127 7.540299 TCGAAACCTGAAATTGTACAGTTTTT 58.460 30.769 16.39 7.45 31.11 1.94
3172 7128 7.090953 TCGAAACCTGAAATTGTACAGTTTT 57.909 32.000 16.39 10.87 32.98 2.43
3173 7129 6.687081 TCGAAACCTGAAATTGTACAGTTT 57.313 33.333 15.40 15.40 32.93 2.66
3174 7130 6.687081 TTCGAAACCTGAAATTGTACAGTT 57.313 33.333 0.00 0.00 32.93 3.16
3175 7131 6.687081 TTTCGAAACCTGAAATTGTACAGT 57.313 33.333 6.47 0.00 30.75 3.55
3176 7132 6.088085 GCATTTCGAAACCTGAAATTGTACAG 59.912 38.462 13.81 0.00 41.91 2.74
3177 7133 5.918011 GCATTTCGAAACCTGAAATTGTACA 59.082 36.000 13.81 0.00 41.91 2.90
3189 7145 5.298276 TGGATAGTTATGGCATTTCGAAACC 59.702 40.000 13.81 11.55 0.00 3.27
3195 7151 5.048782 TGCGATTGGATAGTTATGGCATTTC 60.049 40.000 4.78 0.00 29.81 2.17
3201 7157 6.873605 TGAAGTATGCGATTGGATAGTTATGG 59.126 38.462 13.04 0.00 40.76 2.74
3202 7158 7.889589 TGAAGTATGCGATTGGATAGTTATG 57.110 36.000 13.04 0.00 40.76 1.90
3204 7160 7.225931 GGTTTGAAGTATGCGATTGGATAGTTA 59.774 37.037 13.04 0.00 40.76 2.24
3208 7164 5.680619 AGGTTTGAAGTATGCGATTGGATA 58.319 37.500 0.00 0.00 0.00 2.59
3218 7174 4.201724 GCGCAACTCTAGGTTTGAAGTATG 60.202 45.833 0.30 0.00 35.74 2.39
3219 7175 3.933332 GCGCAACTCTAGGTTTGAAGTAT 59.067 43.478 0.30 0.00 35.74 2.12
3220 7176 3.006537 AGCGCAACTCTAGGTTTGAAGTA 59.993 43.478 11.47 0.00 35.74 2.24
3250 7206 8.462143 TTTGAAACTACATTTGCACGTAAAAA 57.538 26.923 0.00 0.00 0.00 1.94
3251 7207 8.462143 TTTTGAAACTACATTTGCACGTAAAA 57.538 26.923 0.00 0.00 0.00 1.52
3252 7208 7.221067 CCTTTTGAAACTACATTTGCACGTAAA 59.779 33.333 0.00 0.00 0.00 2.01
3253 7209 6.693545 CCTTTTGAAACTACATTTGCACGTAA 59.306 34.615 0.00 0.00 0.00 3.18
3254 7210 6.183360 ACCTTTTGAAACTACATTTGCACGTA 60.183 34.615 0.00 0.00 0.00 3.57
3255 7211 5.040635 CCTTTTGAAACTACATTTGCACGT 58.959 37.500 0.00 0.00 0.00 4.49
3256 7212 5.040635 ACCTTTTGAAACTACATTTGCACG 58.959 37.500 0.00 0.00 0.00 5.34
3257 7213 5.276820 GCACCTTTTGAAACTACATTTGCAC 60.277 40.000 0.00 0.00 0.00 4.57
3258 7214 4.808364 GCACCTTTTGAAACTACATTTGCA 59.192 37.500 0.00 0.00 0.00 4.08
3259 7215 4.808364 TGCACCTTTTGAAACTACATTTGC 59.192 37.500 0.00 0.00 0.00 3.68
3260 7216 5.050837 GCTGCACCTTTTGAAACTACATTTG 60.051 40.000 0.00 0.00 0.00 2.32
3261 7217 5.049828 GCTGCACCTTTTGAAACTACATTT 58.950 37.500 0.00 0.00 0.00 2.32
3262 7218 4.342092 AGCTGCACCTTTTGAAACTACATT 59.658 37.500 1.02 0.00 0.00 2.71
3263 7219 3.891366 AGCTGCACCTTTTGAAACTACAT 59.109 39.130 1.02 0.00 0.00 2.29
3264 7220 3.066621 CAGCTGCACCTTTTGAAACTACA 59.933 43.478 0.00 0.00 0.00 2.74
3265 7221 3.632189 CAGCTGCACCTTTTGAAACTAC 58.368 45.455 0.00 0.00 0.00 2.73
3266 7222 2.034558 GCAGCTGCACCTTTTGAAACTA 59.965 45.455 33.36 0.00 41.59 2.24
3267 7223 1.202452 GCAGCTGCACCTTTTGAAACT 60.202 47.619 33.36 0.00 41.59 2.66
3268 7224 1.211743 GCAGCTGCACCTTTTGAAAC 58.788 50.000 33.36 0.00 41.59 2.78
3269 7225 3.665544 GCAGCTGCACCTTTTGAAA 57.334 47.368 33.36 0.00 41.59 2.69
3280 7236 3.740384 GCAATTTTGTTGCAGCTGC 57.260 47.368 31.89 31.89 44.34 5.25
3286 7242 6.768029 TTAAGAGATGTGCAATTTTGTTGC 57.232 33.333 5.85 5.85 45.11 4.17
3287 7243 7.816031 AGGATTAAGAGATGTGCAATTTTGTTG 59.184 33.333 0.00 0.00 0.00 3.33
3288 7244 7.899973 AGGATTAAGAGATGTGCAATTTTGTT 58.100 30.769 0.00 0.00 0.00 2.83
3289 7245 7.472334 AGGATTAAGAGATGTGCAATTTTGT 57.528 32.000 0.00 0.00 0.00 2.83
3290 7246 9.859427 TTTAGGATTAAGAGATGTGCAATTTTG 57.141 29.630 0.00 0.00 0.00 2.44
3292 7248 9.247861 ACTTTAGGATTAAGAGATGTGCAATTT 57.752 29.630 0.00 0.00 0.00 1.82
3293 7249 8.814038 ACTTTAGGATTAAGAGATGTGCAATT 57.186 30.769 0.00 0.00 0.00 2.32
3294 7250 8.680903 CAACTTTAGGATTAAGAGATGTGCAAT 58.319 33.333 0.00 0.00 0.00 3.56
3295 7251 7.665559 ACAACTTTAGGATTAAGAGATGTGCAA 59.334 33.333 0.00 0.00 0.00 4.08
3296 7252 7.168219 ACAACTTTAGGATTAAGAGATGTGCA 58.832 34.615 0.00 0.00 0.00 4.57
3297 7253 7.617041 ACAACTTTAGGATTAAGAGATGTGC 57.383 36.000 0.00 0.00 0.00 4.57
3327 7283 8.495949 GCATTTTGTAGTTGCGTATATACTCAT 58.504 33.333 11.05 0.00 0.00 2.90
3338 7301 9.877137 TTATCATTATAGCATTTTGTAGTTGCG 57.123 29.630 0.00 0.00 41.22 4.85
3401 7424 7.330208 GTGTTAATGGACTAGCGAAAAGAAGTA 59.670 37.037 0.00 0.00 0.00 2.24
3437 7473 1.388547 TGAAAACTTTGCGCTCACCT 58.611 45.000 9.73 0.00 0.00 4.00
3463 7499 7.726291 AGAGTAAGTTCTAGCTATGCTTATGGA 59.274 37.037 12.07 0.00 40.44 3.41
3465 7501 8.572185 TGAGAGTAAGTTCTAGCTATGCTTATG 58.428 37.037 12.07 0.00 40.44 1.90
3472 7508 7.255312 CGTGGAATGAGAGTAAGTTCTAGCTAT 60.255 40.741 0.00 0.00 0.00 2.97
3480 7516 3.678056 TGCGTGGAATGAGAGTAAGTT 57.322 42.857 0.00 0.00 0.00 2.66
3495 7531 4.530094 TTTAAGTGACAACTCTTGCGTG 57.470 40.909 0.00 0.00 34.77 5.34
3565 7602 4.689062 AGATCAGAGGGAGTACTTGGAAA 58.311 43.478 0.00 0.00 0.00 3.13
3581 7618 8.333908 GTTTGAGCAACAAGTGATATAGATCAG 58.666 37.037 0.00 0.00 37.77 2.90
3582 7619 7.010460 CGTTTGAGCAACAAGTGATATAGATCA 59.990 37.037 0.00 0.00 38.50 2.92
3587 7624 5.929415 TGTCGTTTGAGCAACAAGTGATATA 59.071 36.000 0.00 0.00 39.77 0.86
3592 7629 2.823196 TGTCGTTTGAGCAACAAGTG 57.177 45.000 0.00 0.00 39.77 3.16
3597 7634 7.295201 TCAATATTACTTGTCGTTTGAGCAAC 58.705 34.615 0.00 0.00 0.00 4.17
3697 7734 4.207165 GAGTTCTCTCTGCTAGTGGAGAT 58.793 47.826 14.11 3.61 39.88 2.75
3701 7738 2.165437 GTGGAGTTCTCTCTGCTAGTGG 59.835 54.545 0.00 0.00 40.29 4.00
3707 7744 1.337635 CCTGTGTGGAGTTCTCTCTGC 60.338 57.143 0.00 0.00 40.29 4.26
3709 7746 2.685106 TCCTGTGTGGAGTTCTCTCT 57.315 50.000 0.00 0.00 40.56 3.10
3764 9710 7.012044 AGCGTGTTAATCCATATAAAAGTCACC 59.988 37.037 0.00 0.00 0.00 4.02
3765 9711 7.916552 AGCGTGTTAATCCATATAAAAGTCAC 58.083 34.615 0.00 0.00 0.00 3.67
3769 9715 7.490962 TGGAGCGTGTTAATCCATATAAAAG 57.509 36.000 0.00 0.00 38.19 2.27
3783 9729 3.074412 CTCTTTGGTAATGGAGCGTGTT 58.926 45.455 0.00 0.00 0.00 3.32
3784 9730 2.301870 TCTCTTTGGTAATGGAGCGTGT 59.698 45.455 0.00 0.00 0.00 4.49
3786 9732 3.695830 TTCTCTTTGGTAATGGAGCGT 57.304 42.857 0.00 0.00 0.00 5.07
3854 9800 3.202001 CCCGCCCTGTGCAATACG 61.202 66.667 0.00 0.00 41.33 3.06
3858 9804 4.531426 AAACCCCGCCCTGTGCAA 62.531 61.111 0.00 0.00 41.33 4.08
3859 9805 2.642183 TAAAAACCCCGCCCTGTGCA 62.642 55.000 0.00 0.00 41.33 4.57
3860 9806 1.465200 TTAAAAACCCCGCCCTGTGC 61.465 55.000 0.00 0.00 0.00 4.57
3861 9807 2.734893 TTAAAAACCCCGCCCTGTG 58.265 52.632 0.00 0.00 0.00 3.66



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.