Multiple sequence alignment - TraesCS7A01G507800
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS7A01G507800 | chr7A | 100.000 | 3880 | 0 | 0 | 1 | 3880 | 694518776 | 694514897 | 0.000000e+00 | 7166.0 |
1 | TraesCS7A01G507800 | chr7A | 87.204 | 211 | 27 | 0 | 1151 | 1361 | 581035265 | 581035475 | 1.390000e-59 | 241.0 |
2 | TraesCS7A01G507800 | chr7D | 89.791 | 2968 | 200 | 60 | 827 | 3740 | 602849020 | 602846102 | 0.000000e+00 | 3707.0 |
3 | TraesCS7A01G507800 | chr7D | 94.294 | 333 | 18 | 1 | 1 | 333 | 177572080 | 177572411 | 3.460000e-140 | 508.0 |
4 | TraesCS7A01G507800 | chr7D | 92.953 | 298 | 8 | 5 | 470 | 757 | 602849745 | 602849451 | 4.630000e-114 | 422.0 |
5 | TraesCS7A01G507800 | chr7D | 78.926 | 484 | 91 | 10 | 2403 | 2879 | 510324837 | 510325316 | 6.260000e-83 | 318.0 |
6 | TraesCS7A01G507800 | chr7D | 85.185 | 243 | 34 | 2 | 1119 | 1361 | 510323404 | 510323644 | 8.320000e-62 | 248.0 |
7 | TraesCS7A01G507800 | chr7D | 91.724 | 145 | 9 | 2 | 330 | 472 | 602850398 | 602850255 | 8.500000e-47 | 198.0 |
8 | TraesCS7A01G507800 | chr7D | 92.523 | 107 | 8 | 0 | 3752 | 3858 | 602844181 | 602844075 | 1.870000e-33 | 154.0 |
9 | TraesCS7A01G507800 | chr7B | 92.275 | 2356 | 101 | 39 | 823 | 3157 | 683468963 | 683466668 | 0.000000e+00 | 3267.0 |
10 | TraesCS7A01G507800 | chr7B | 95.152 | 330 | 15 | 1 | 1 | 329 | 390608683 | 390609012 | 1.600000e-143 | 520.0 |
11 | TraesCS7A01G507800 | chr7B | 87.291 | 299 | 32 | 4 | 330 | 627 | 683469850 | 683469557 | 1.730000e-88 | 337.0 |
12 | TraesCS7A01G507800 | chr7B | 78.958 | 480 | 92 | 8 | 2403 | 2876 | 538572394 | 538572870 | 6.260000e-83 | 318.0 |
13 | TraesCS7A01G507800 | chr7B | 85.841 | 226 | 32 | 0 | 1136 | 1361 | 538570961 | 538571186 | 1.390000e-59 | 241.0 |
14 | TraesCS7A01G507800 | chr7B | 87.755 | 196 | 13 | 3 | 622 | 817 | 683469233 | 683469049 | 6.530000e-53 | 219.0 |
15 | TraesCS7A01G507800 | chr3D | 94.864 | 331 | 16 | 1 | 1 | 331 | 484285513 | 484285184 | 2.070000e-142 | 516.0 |
16 | TraesCS7A01G507800 | chr3D | 78.468 | 483 | 93 | 10 | 2404 | 2879 | 156212226 | 156212704 | 4.870000e-79 | 305.0 |
17 | TraesCS7A01G507800 | chr3D | 87.000 | 200 | 26 | 0 | 1162 | 1361 | 156210829 | 156211028 | 3.900000e-55 | 226.0 |
18 | TraesCS7A01G507800 | chr4B | 94.595 | 333 | 16 | 2 | 1 | 333 | 393154274 | 393153944 | 7.430000e-142 | 514.0 |
19 | TraesCS7A01G507800 | chr4B | 83.117 | 154 | 24 | 2 | 330 | 482 | 658661696 | 658661848 | 5.230000e-29 | 139.0 |
20 | TraesCS7A01G507800 | chr1A | 94.578 | 332 | 17 | 1 | 1 | 332 | 101280061 | 101280391 | 2.670000e-141 | 512.0 |
21 | TraesCS7A01G507800 | chr6A | 94.294 | 333 | 19 | 0 | 1 | 333 | 278736775 | 278737107 | 9.620000e-141 | 510.0 |
22 | TraesCS7A01G507800 | chr6A | 94.277 | 332 | 19 | 0 | 1 | 332 | 371704978 | 371705309 | 3.460000e-140 | 508.0 |
23 | TraesCS7A01G507800 | chr5A | 94.562 | 331 | 17 | 1 | 1 | 331 | 372570512 | 372570183 | 9.620000e-141 | 510.0 |
24 | TraesCS7A01G507800 | chr2B | 93.529 | 340 | 19 | 3 | 1 | 338 | 797738140 | 797737802 | 1.610000e-138 | 503.0 |
25 | TraesCS7A01G507800 | chr3A | 78.423 | 482 | 95 | 8 | 2404 | 2879 | 175846163 | 175846641 | 4.870000e-79 | 305.0 |
26 | TraesCS7A01G507800 | chr3B | 78.194 | 454 | 92 | 6 | 2404 | 2852 | 225316113 | 225315662 | 2.280000e-72 | 283.0 |
27 | TraesCS7A01G507800 | chr3B | 85.782 | 211 | 30 | 0 | 1151 | 1361 | 225319822 | 225319612 | 1.400000e-54 | 224.0 |
28 | TraesCS7A01G507800 | chr5D | 82.353 | 153 | 25 | 2 | 330 | 481 | 393911175 | 393911024 | 8.750000e-27 | 132.0 |
29 | TraesCS7A01G507800 | chr1B | 82.105 | 95 | 17 | 0 | 1915 | 2009 | 115281700 | 115281606 | 8.930000e-12 | 82.4 |
30 | TraesCS7A01G507800 | chr4D | 78.030 | 132 | 23 | 6 | 366 | 494 | 78846413 | 78846285 | 1.160000e-10 | 78.7 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS7A01G507800 | chr7A | 694514897 | 694518776 | 3879 | True | 7166.000000 | 7166 | 100.00000 | 1 | 3880 | 1 | chr7A.!!$R1 | 3879 |
1 | TraesCS7A01G507800 | chr7D | 602844075 | 602850398 | 6323 | True | 1120.250000 | 3707 | 91.74775 | 330 | 3858 | 4 | chr7D.!!$R1 | 3528 |
2 | TraesCS7A01G507800 | chr7D | 510323404 | 510325316 | 1912 | False | 283.000000 | 318 | 82.05550 | 1119 | 2879 | 2 | chr7D.!!$F2 | 1760 |
3 | TraesCS7A01G507800 | chr7B | 683466668 | 683469850 | 3182 | True | 1274.333333 | 3267 | 89.10700 | 330 | 3157 | 3 | chr7B.!!$R1 | 2827 |
4 | TraesCS7A01G507800 | chr7B | 538570961 | 538572870 | 1909 | False | 279.500000 | 318 | 82.39950 | 1136 | 2876 | 2 | chr7B.!!$F2 | 1740 |
5 | TraesCS7A01G507800 | chr3D | 156210829 | 156212704 | 1875 | False | 265.500000 | 305 | 82.73400 | 1162 | 2879 | 2 | chr3D.!!$F1 | 1717 |
6 | TraesCS7A01G507800 | chr3B | 225315662 | 225319822 | 4160 | True | 253.500000 | 283 | 81.98800 | 1151 | 2852 | 2 | chr3B.!!$R1 | 1701 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
176 | 177 | 0.168128 | GACGGCGGGTTGATTTCAAG | 59.832 | 55.0 | 13.24 | 0.00 | 36.39 | 3.02 | F |
246 | 247 | 0.179023 | TTAAAACAGGACCGCGGGTT | 60.179 | 50.0 | 31.76 | 20.53 | 35.25 | 4.11 | F |
257 | 258 | 0.391130 | CCGCGGGTTGAATTCTCTGA | 60.391 | 55.0 | 20.10 | 0.00 | 0.00 | 3.27 | F |
549 | 1067 | 0.664166 | GCCTTTGACGCCATGTTGTG | 60.664 | 55.0 | 0.00 | 0.00 | 0.00 | 3.33 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1731 | 5377 | 0.690762 | TGTTGGTGTAGGAGAAGCCC | 59.309 | 55.000 | 0.0 | 0.0 | 37.37 | 5.19 | R |
2147 | 6025 | 0.760945 | AGATCCCATCCGAGACCACC | 60.761 | 60.000 | 0.0 | 0.0 | 0.00 | 4.61 | R |
2230 | 6144 | 1.270094 | TGAAGAAGTCGTTCCATGCGT | 60.270 | 47.619 | 0.0 | 0.0 | 32.48 | 5.24 | R |
2882 | 6829 | 2.038557 | AGTGGGTGCTAATGAACGAACT | 59.961 | 45.455 | 0.0 | 0.0 | 0.00 | 3.01 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
28 | 29 | 5.789710 | ACATGTTTAAATCGGAGTTACGG | 57.210 | 39.130 | 0.00 | 0.00 | 0.00 | 4.02 |
29 | 30 | 5.240121 | ACATGTTTAAATCGGAGTTACGGT | 58.760 | 37.500 | 0.00 | 0.00 | 0.00 | 4.83 |
30 | 31 | 5.702209 | ACATGTTTAAATCGGAGTTACGGTT | 59.298 | 36.000 | 0.00 | 0.00 | 39.15 | 4.44 |
32 | 33 | 7.387397 | ACATGTTTAAATCGGAGTTACGGTTTA | 59.613 | 33.333 | 0.00 | 0.00 | 44.49 | 2.01 |
38 | 39 | 7.677454 | AAATCGGAGTTACGGTTTAAAAGAT | 57.323 | 32.000 | 0.00 | 0.00 | 44.49 | 2.40 |
39 | 40 | 8.776376 | AAATCGGAGTTACGGTTTAAAAGATA | 57.224 | 30.769 | 0.00 | 0.00 | 44.49 | 1.98 |
40 | 41 | 8.953368 | AATCGGAGTTACGGTTTAAAAGATAT | 57.047 | 30.769 | 0.00 | 0.00 | 32.43 | 1.63 |
41 | 42 | 7.760131 | TCGGAGTTACGGTTTAAAAGATATG | 57.240 | 36.000 | 0.00 | 0.00 | 0.00 | 1.78 |
42 | 43 | 6.757947 | TCGGAGTTACGGTTTAAAAGATATGG | 59.242 | 38.462 | 0.00 | 0.00 | 0.00 | 2.74 |
43 | 44 | 6.757947 | CGGAGTTACGGTTTAAAAGATATGGA | 59.242 | 38.462 | 0.00 | 0.00 | 0.00 | 3.41 |
44 | 45 | 7.440255 | CGGAGTTACGGTTTAAAAGATATGGAT | 59.560 | 37.037 | 0.00 | 0.00 | 0.00 | 3.41 |
45 | 46 | 8.557029 | GGAGTTACGGTTTAAAAGATATGGATG | 58.443 | 37.037 | 0.00 | 0.00 | 0.00 | 3.51 |
46 | 47 | 9.321562 | GAGTTACGGTTTAAAAGATATGGATGA | 57.678 | 33.333 | 0.00 | 0.00 | 0.00 | 2.92 |
47 | 48 | 9.847224 | AGTTACGGTTTAAAAGATATGGATGAT | 57.153 | 29.630 | 0.00 | 0.00 | 0.00 | 2.45 |
66 | 67 | 9.947669 | TGGATGATTTTAAAAAGCATTTGTTTG | 57.052 | 25.926 | 16.19 | 0.00 | 39.02 | 2.93 |
81 | 82 | 9.807649 | AGCATTTGTTTGACTTAAATATGATCC | 57.192 | 29.630 | 0.00 | 0.00 | 0.00 | 3.36 |
82 | 83 | 8.745837 | GCATTTGTTTGACTTAAATATGATCCG | 58.254 | 33.333 | 0.00 | 0.00 | 0.00 | 4.18 |
83 | 84 | 9.787532 | CATTTGTTTGACTTAAATATGATCCGT | 57.212 | 29.630 | 0.00 | 0.00 | 0.00 | 4.69 |
84 | 85 | 9.787532 | ATTTGTTTGACTTAAATATGATCCGTG | 57.212 | 29.630 | 0.00 | 0.00 | 0.00 | 4.94 |
85 | 86 | 7.315247 | TGTTTGACTTAAATATGATCCGTGG | 57.685 | 36.000 | 0.00 | 0.00 | 0.00 | 4.94 |
86 | 87 | 7.106890 | TGTTTGACTTAAATATGATCCGTGGA | 58.893 | 34.615 | 0.00 | 0.00 | 0.00 | 4.02 |
87 | 88 | 7.773224 | TGTTTGACTTAAATATGATCCGTGGAT | 59.227 | 33.333 | 0.00 | 0.00 | 37.59 | 3.41 |
88 | 89 | 7.728847 | TTGACTTAAATATGATCCGTGGATG | 57.271 | 36.000 | 6.03 | 0.00 | 34.60 | 3.51 |
89 | 90 | 7.061566 | TGACTTAAATATGATCCGTGGATGA | 57.938 | 36.000 | 6.03 | 0.00 | 34.60 | 2.92 |
90 | 91 | 7.505258 | TGACTTAAATATGATCCGTGGATGAA | 58.495 | 34.615 | 6.03 | 0.00 | 34.60 | 2.57 |
91 | 92 | 8.156820 | TGACTTAAATATGATCCGTGGATGAAT | 58.843 | 33.333 | 6.03 | 2.80 | 34.60 | 2.57 |
92 | 93 | 8.924511 | ACTTAAATATGATCCGTGGATGAATT | 57.075 | 30.769 | 6.03 | 0.72 | 34.60 | 2.17 |
95 | 96 | 7.687941 | AAATATGATCCGTGGATGAATTACC | 57.312 | 36.000 | 6.03 | 0.00 | 34.60 | 2.85 |
96 | 97 | 4.982241 | ATGATCCGTGGATGAATTACCT | 57.018 | 40.909 | 6.03 | 0.00 | 34.60 | 3.08 |
97 | 98 | 7.733773 | ATATGATCCGTGGATGAATTACCTA | 57.266 | 36.000 | 6.03 | 0.00 | 34.60 | 3.08 |
98 | 99 | 5.880164 | TGATCCGTGGATGAATTACCTAA | 57.120 | 39.130 | 6.03 | 0.00 | 34.60 | 2.69 |
99 | 100 | 6.241882 | TGATCCGTGGATGAATTACCTAAA | 57.758 | 37.500 | 6.03 | 0.00 | 34.60 | 1.85 |
100 | 101 | 6.654959 | TGATCCGTGGATGAATTACCTAAAA | 58.345 | 36.000 | 6.03 | 0.00 | 34.60 | 1.52 |
101 | 102 | 6.540914 | TGATCCGTGGATGAATTACCTAAAAC | 59.459 | 38.462 | 6.03 | 0.00 | 34.60 | 2.43 |
102 | 103 | 5.806818 | TCCGTGGATGAATTACCTAAAACA | 58.193 | 37.500 | 0.00 | 0.00 | 0.00 | 2.83 |
103 | 104 | 6.419791 | TCCGTGGATGAATTACCTAAAACAT | 58.580 | 36.000 | 0.00 | 0.00 | 0.00 | 2.71 |
104 | 105 | 6.540914 | TCCGTGGATGAATTACCTAAAACATC | 59.459 | 38.462 | 0.00 | 0.00 | 34.37 | 3.06 |
105 | 106 | 6.317642 | CCGTGGATGAATTACCTAAAACATCA | 59.682 | 38.462 | 0.00 | 0.00 | 35.54 | 3.07 |
106 | 107 | 7.409697 | CGTGGATGAATTACCTAAAACATCAG | 58.590 | 38.462 | 0.00 | 0.00 | 35.54 | 2.90 |
107 | 108 | 7.467267 | CGTGGATGAATTACCTAAAACATCAGG | 60.467 | 40.741 | 0.00 | 0.00 | 35.54 | 3.86 |
108 | 109 | 6.833416 | TGGATGAATTACCTAAAACATCAGGG | 59.167 | 38.462 | 0.00 | 0.00 | 36.15 | 4.45 |
109 | 110 | 6.265422 | GGATGAATTACCTAAAACATCAGGGG | 59.735 | 42.308 | 0.00 | 0.00 | 36.15 | 4.79 |
110 | 111 | 5.515106 | TGAATTACCTAAAACATCAGGGGG | 58.485 | 41.667 | 0.00 | 0.00 | 36.15 | 5.40 |
148 | 149 | 9.793259 | ATATAAAATAATGATTCGGGTGTGACT | 57.207 | 29.630 | 0.00 | 0.00 | 0.00 | 3.41 |
149 | 150 | 6.834168 | AAAATAATGATTCGGGTGTGACTT | 57.166 | 33.333 | 0.00 | 0.00 | 0.00 | 3.01 |
150 | 151 | 7.931578 | AAAATAATGATTCGGGTGTGACTTA | 57.068 | 32.000 | 0.00 | 0.00 | 0.00 | 2.24 |
151 | 152 | 7.931578 | AAATAATGATTCGGGTGTGACTTAA | 57.068 | 32.000 | 0.00 | 0.00 | 0.00 | 1.85 |
152 | 153 | 7.931578 | AATAATGATTCGGGTGTGACTTAAA | 57.068 | 32.000 | 0.00 | 0.00 | 0.00 | 1.52 |
153 | 154 | 8.519799 | AATAATGATTCGGGTGTGACTTAAAT | 57.480 | 30.769 | 0.00 | 0.00 | 0.00 | 1.40 |
154 | 155 | 6.436843 | AATGATTCGGGTGTGACTTAAATC | 57.563 | 37.500 | 0.00 | 0.00 | 0.00 | 2.17 |
155 | 156 | 4.258543 | TGATTCGGGTGTGACTTAAATCC | 58.741 | 43.478 | 0.00 | 0.00 | 0.00 | 3.01 |
156 | 157 | 2.373540 | TCGGGTGTGACTTAAATCCG | 57.626 | 50.000 | 0.00 | 0.00 | 37.61 | 4.18 |
157 | 158 | 1.066716 | TCGGGTGTGACTTAAATCCGG | 60.067 | 52.381 | 0.00 | 0.00 | 36.99 | 5.14 |
158 | 159 | 1.066716 | CGGGTGTGACTTAAATCCGGA | 60.067 | 52.381 | 6.61 | 6.61 | 33.27 | 5.14 |
159 | 160 | 2.353323 | GGGTGTGACTTAAATCCGGAC | 58.647 | 52.381 | 6.12 | 0.00 | 0.00 | 4.79 |
160 | 161 | 1.997606 | GGTGTGACTTAAATCCGGACG | 59.002 | 52.381 | 6.12 | 0.00 | 0.00 | 4.79 |
161 | 162 | 1.997606 | GTGTGACTTAAATCCGGACGG | 59.002 | 52.381 | 6.12 | 3.96 | 0.00 | 4.79 |
162 | 163 | 1.004595 | GTGACTTAAATCCGGACGGC | 58.995 | 55.000 | 6.12 | 0.00 | 34.68 | 5.68 |
163 | 164 | 0.458889 | TGACTTAAATCCGGACGGCG | 60.459 | 55.000 | 6.12 | 4.80 | 34.68 | 6.46 |
164 | 165 | 1.149964 | GACTTAAATCCGGACGGCGG | 61.150 | 60.000 | 6.12 | 0.00 | 34.68 | 6.13 |
165 | 166 | 1.885850 | CTTAAATCCGGACGGCGGG | 60.886 | 63.158 | 6.12 | 8.96 | 35.92 | 6.13 |
166 | 167 | 2.582734 | CTTAAATCCGGACGGCGGGT | 62.583 | 60.000 | 15.41 | 0.00 | 36.04 | 5.28 |
167 | 168 | 2.182732 | TTAAATCCGGACGGCGGGTT | 62.183 | 55.000 | 15.41 | 3.28 | 36.04 | 4.11 |
168 | 169 | 2.855880 | TAAATCCGGACGGCGGGTTG | 62.856 | 60.000 | 15.41 | 0.00 | 36.04 | 3.77 |
171 | 172 | 4.770874 | CCGGACGGCGGGTTGATT | 62.771 | 66.667 | 13.24 | 0.00 | 0.00 | 2.57 |
172 | 173 | 2.744709 | CGGACGGCGGGTTGATTT | 60.745 | 61.111 | 13.24 | 0.00 | 0.00 | 2.17 |
173 | 174 | 2.746803 | CGGACGGCGGGTTGATTTC | 61.747 | 63.158 | 13.24 | 0.00 | 0.00 | 2.17 |
174 | 175 | 1.673009 | GGACGGCGGGTTGATTTCA | 60.673 | 57.895 | 13.24 | 0.00 | 0.00 | 2.69 |
175 | 176 | 1.238625 | GGACGGCGGGTTGATTTCAA | 61.239 | 55.000 | 13.24 | 0.00 | 0.00 | 2.69 |
176 | 177 | 0.168128 | GACGGCGGGTTGATTTCAAG | 59.832 | 55.000 | 13.24 | 0.00 | 36.39 | 3.02 |
177 | 178 | 0.250553 | ACGGCGGGTTGATTTCAAGA | 60.251 | 50.000 | 13.24 | 0.00 | 36.39 | 3.02 |
178 | 179 | 0.878416 | CGGCGGGTTGATTTCAAGAA | 59.122 | 50.000 | 0.00 | 0.00 | 36.39 | 2.52 |
179 | 180 | 1.268352 | CGGCGGGTTGATTTCAAGAAA | 59.732 | 47.619 | 0.00 | 0.00 | 36.39 | 2.52 |
180 | 181 | 2.287909 | CGGCGGGTTGATTTCAAGAAAA | 60.288 | 45.455 | 0.00 | 0.00 | 36.39 | 2.29 |
181 | 182 | 3.317150 | GGCGGGTTGATTTCAAGAAAAG | 58.683 | 45.455 | 0.00 | 0.00 | 36.39 | 2.27 |
182 | 183 | 3.005367 | GGCGGGTTGATTTCAAGAAAAGA | 59.995 | 43.478 | 0.00 | 0.00 | 36.39 | 2.52 |
183 | 184 | 3.981416 | GCGGGTTGATTTCAAGAAAAGAC | 59.019 | 43.478 | 0.00 | 0.00 | 36.39 | 3.01 |
184 | 185 | 4.499019 | GCGGGTTGATTTCAAGAAAAGACA | 60.499 | 41.667 | 0.00 | 0.00 | 36.39 | 3.41 |
185 | 186 | 5.215160 | CGGGTTGATTTCAAGAAAAGACAG | 58.785 | 41.667 | 0.00 | 0.00 | 36.39 | 3.51 |
186 | 187 | 5.008613 | CGGGTTGATTTCAAGAAAAGACAGA | 59.991 | 40.000 | 0.00 | 0.00 | 36.39 | 3.41 |
187 | 188 | 6.442112 | GGGTTGATTTCAAGAAAAGACAGAG | 58.558 | 40.000 | 0.00 | 0.00 | 36.39 | 3.35 |
188 | 189 | 6.263168 | GGGTTGATTTCAAGAAAAGACAGAGA | 59.737 | 38.462 | 0.00 | 0.00 | 36.39 | 3.10 |
189 | 190 | 7.135467 | GGTTGATTTCAAGAAAAGACAGAGAC | 58.865 | 38.462 | 0.00 | 0.00 | 36.39 | 3.36 |
190 | 191 | 7.012799 | GGTTGATTTCAAGAAAAGACAGAGACT | 59.987 | 37.037 | 0.00 | 0.00 | 36.39 | 3.24 |
191 | 192 | 8.401709 | GTTGATTTCAAGAAAAGACAGAGACTT | 58.598 | 33.333 | 0.00 | 0.00 | 36.39 | 3.01 |
192 | 193 | 8.511604 | TGATTTCAAGAAAAGACAGAGACTTT | 57.488 | 30.769 | 0.00 | 0.00 | 38.91 | 2.66 |
193 | 194 | 8.960591 | TGATTTCAAGAAAAGACAGAGACTTTT | 58.039 | 29.630 | 0.00 | 0.00 | 45.95 | 2.27 |
194 | 195 | 9.230932 | GATTTCAAGAAAAGACAGAGACTTTTG | 57.769 | 33.333 | 10.86 | 0.63 | 44.20 | 2.44 |
195 | 196 | 7.687941 | TTCAAGAAAAGACAGAGACTTTTGT | 57.312 | 32.000 | 10.86 | 5.52 | 44.20 | 2.83 |
196 | 197 | 7.076842 | TCAAGAAAAGACAGAGACTTTTGTG | 57.923 | 36.000 | 10.86 | 9.08 | 44.20 | 3.33 |
197 | 198 | 6.655003 | TCAAGAAAAGACAGAGACTTTTGTGT | 59.345 | 34.615 | 10.86 | 0.00 | 44.20 | 3.72 |
198 | 199 | 7.822334 | TCAAGAAAAGACAGAGACTTTTGTGTA | 59.178 | 33.333 | 10.86 | 0.00 | 44.20 | 2.90 |
199 | 200 | 8.450964 | CAAGAAAAGACAGAGACTTTTGTGTAA | 58.549 | 33.333 | 10.86 | 0.00 | 44.20 | 2.41 |
200 | 201 | 8.561738 | AGAAAAGACAGAGACTTTTGTGTAAA | 57.438 | 30.769 | 10.86 | 0.00 | 44.20 | 2.01 |
201 | 202 | 9.010029 | AGAAAAGACAGAGACTTTTGTGTAAAA | 57.990 | 29.630 | 10.86 | 0.00 | 44.20 | 1.52 |
202 | 203 | 9.788960 | GAAAAGACAGAGACTTTTGTGTAAAAT | 57.211 | 29.630 | 10.86 | 0.00 | 44.20 | 1.82 |
205 | 206 | 8.073355 | AGACAGAGACTTTTGTGTAAAATACG | 57.927 | 34.615 | 0.00 | 0.00 | 35.39 | 3.06 |
206 | 207 | 7.924412 | AGACAGAGACTTTTGTGTAAAATACGA | 59.076 | 33.333 | 0.00 | 0.00 | 35.39 | 3.43 |
207 | 208 | 8.428186 | ACAGAGACTTTTGTGTAAAATACGAA | 57.572 | 30.769 | 0.00 | 0.00 | 35.39 | 3.85 |
208 | 209 | 8.885722 | ACAGAGACTTTTGTGTAAAATACGAAA | 58.114 | 29.630 | 0.00 | 0.00 | 35.39 | 3.46 |
209 | 210 | 9.710979 | CAGAGACTTTTGTGTAAAATACGAAAA | 57.289 | 29.630 | 0.00 | 0.00 | 35.39 | 2.29 |
242 | 243 | 4.471157 | TTTAACTTAAAACAGGACCGCG | 57.529 | 40.909 | 0.00 | 0.00 | 0.00 | 6.46 |
243 | 244 | 1.232119 | AACTTAAAACAGGACCGCGG | 58.768 | 50.000 | 26.86 | 26.86 | 0.00 | 6.46 |
244 | 245 | 0.604511 | ACTTAAAACAGGACCGCGGG | 60.605 | 55.000 | 31.76 | 14.36 | 0.00 | 6.13 |
245 | 246 | 0.604511 | CTTAAAACAGGACCGCGGGT | 60.605 | 55.000 | 31.76 | 15.13 | 39.44 | 5.28 |
246 | 247 | 0.179023 | TTAAAACAGGACCGCGGGTT | 60.179 | 50.000 | 31.76 | 20.53 | 35.25 | 4.11 |
247 | 248 | 0.885596 | TAAAACAGGACCGCGGGTTG | 60.886 | 55.000 | 31.76 | 24.78 | 35.25 | 3.77 |
248 | 249 | 2.612095 | AAAACAGGACCGCGGGTTGA | 62.612 | 55.000 | 31.76 | 0.00 | 35.25 | 3.18 |
249 | 250 | 2.612095 | AAACAGGACCGCGGGTTGAA | 62.612 | 55.000 | 31.76 | 0.00 | 35.25 | 2.69 |
250 | 251 | 2.046314 | CAGGACCGCGGGTTGAAT | 60.046 | 61.111 | 31.76 | 6.78 | 35.25 | 2.57 |
251 | 252 | 1.674322 | CAGGACCGCGGGTTGAATT | 60.674 | 57.895 | 31.76 | 5.85 | 35.25 | 2.17 |
252 | 253 | 1.376812 | AGGACCGCGGGTTGAATTC | 60.377 | 57.895 | 31.76 | 15.78 | 35.25 | 2.17 |
253 | 254 | 1.376812 | GGACCGCGGGTTGAATTCT | 60.377 | 57.895 | 31.76 | 3.99 | 35.25 | 2.40 |
254 | 255 | 1.366854 | GGACCGCGGGTTGAATTCTC | 61.367 | 60.000 | 31.76 | 14.18 | 35.25 | 2.87 |
255 | 256 | 0.391263 | GACCGCGGGTTGAATTCTCT | 60.391 | 55.000 | 31.76 | 2.41 | 35.25 | 3.10 |
256 | 257 | 0.673644 | ACCGCGGGTTGAATTCTCTG | 60.674 | 55.000 | 31.76 | 0.00 | 27.29 | 3.35 |
257 | 258 | 0.391130 | CCGCGGGTTGAATTCTCTGA | 60.391 | 55.000 | 20.10 | 0.00 | 0.00 | 3.27 |
258 | 259 | 1.438651 | CGCGGGTTGAATTCTCTGAA | 58.561 | 50.000 | 7.05 | 0.00 | 0.00 | 3.02 |
259 | 260 | 1.804151 | CGCGGGTTGAATTCTCTGAAA | 59.196 | 47.619 | 7.05 | 0.00 | 0.00 | 2.69 |
260 | 261 | 2.420022 | CGCGGGTTGAATTCTCTGAAAT | 59.580 | 45.455 | 7.05 | 0.00 | 0.00 | 2.17 |
261 | 262 | 3.621268 | CGCGGGTTGAATTCTCTGAAATA | 59.379 | 43.478 | 7.05 | 0.00 | 0.00 | 1.40 |
262 | 263 | 4.260375 | CGCGGGTTGAATTCTCTGAAATAG | 60.260 | 45.833 | 7.05 | 0.00 | 0.00 | 1.73 |
263 | 264 | 4.876107 | GCGGGTTGAATTCTCTGAAATAGA | 59.124 | 41.667 | 7.05 | 0.00 | 0.00 | 1.98 |
277 | 278 | 7.808279 | TCTGAAATAGAGGGACTTTCCTAAA | 57.192 | 36.000 | 0.00 | 0.00 | 41.55 | 1.85 |
278 | 279 | 8.214721 | TCTGAAATAGAGGGACTTTCCTAAAA | 57.785 | 34.615 | 0.00 | 0.00 | 41.55 | 1.52 |
279 | 280 | 8.665906 | TCTGAAATAGAGGGACTTTCCTAAAAA | 58.334 | 33.333 | 0.00 | 0.00 | 41.55 | 1.94 |
295 | 296 | 1.529226 | AAAAATGCCATGACGGACGA | 58.471 | 45.000 | 0.00 | 0.00 | 36.56 | 4.20 |
296 | 297 | 1.529226 | AAAATGCCATGACGGACGAA | 58.471 | 45.000 | 0.00 | 0.00 | 36.56 | 3.85 |
297 | 298 | 1.529226 | AAATGCCATGACGGACGAAA | 58.471 | 45.000 | 0.00 | 0.00 | 36.56 | 3.46 |
298 | 299 | 1.750193 | AATGCCATGACGGACGAAAT | 58.250 | 45.000 | 0.00 | 0.00 | 36.56 | 2.17 |
299 | 300 | 2.613026 | ATGCCATGACGGACGAAATA | 57.387 | 45.000 | 0.00 | 0.00 | 36.56 | 1.40 |
300 | 301 | 2.388310 | TGCCATGACGGACGAAATAA | 57.612 | 45.000 | 0.00 | 0.00 | 36.56 | 1.40 |
301 | 302 | 2.701107 | TGCCATGACGGACGAAATAAA | 58.299 | 42.857 | 0.00 | 0.00 | 36.56 | 1.40 |
302 | 303 | 2.417239 | TGCCATGACGGACGAAATAAAC | 59.583 | 45.455 | 0.00 | 0.00 | 36.56 | 2.01 |
303 | 304 | 2.223180 | GCCATGACGGACGAAATAAACC | 60.223 | 50.000 | 0.00 | 0.00 | 36.56 | 3.27 |
304 | 305 | 2.353579 | CCATGACGGACGAAATAAACCC | 59.646 | 50.000 | 0.00 | 0.00 | 36.56 | 4.11 |
305 | 306 | 2.835580 | TGACGGACGAAATAAACCCA | 57.164 | 45.000 | 0.00 | 0.00 | 0.00 | 4.51 |
306 | 307 | 3.123157 | TGACGGACGAAATAAACCCAA | 57.877 | 42.857 | 0.00 | 0.00 | 0.00 | 4.12 |
307 | 308 | 3.677190 | TGACGGACGAAATAAACCCAAT | 58.323 | 40.909 | 0.00 | 0.00 | 0.00 | 3.16 |
308 | 309 | 4.073549 | TGACGGACGAAATAAACCCAATT | 58.926 | 39.130 | 0.00 | 0.00 | 0.00 | 2.32 |
309 | 310 | 4.519730 | TGACGGACGAAATAAACCCAATTT | 59.480 | 37.500 | 0.00 | 0.00 | 0.00 | 1.82 |
310 | 311 | 5.704515 | TGACGGACGAAATAAACCCAATTTA | 59.295 | 36.000 | 0.00 | 0.00 | 37.18 | 1.40 |
311 | 312 | 5.941733 | ACGGACGAAATAAACCCAATTTAC | 58.058 | 37.500 | 0.00 | 0.00 | 35.57 | 2.01 |
312 | 313 | 5.706833 | ACGGACGAAATAAACCCAATTTACT | 59.293 | 36.000 | 0.00 | 0.00 | 35.57 | 2.24 |
313 | 314 | 6.207221 | ACGGACGAAATAAACCCAATTTACTT | 59.793 | 34.615 | 0.00 | 0.00 | 35.57 | 2.24 |
314 | 315 | 7.085746 | CGGACGAAATAAACCCAATTTACTTT | 58.914 | 34.615 | 0.00 | 0.00 | 35.57 | 2.66 |
315 | 316 | 8.235905 | CGGACGAAATAAACCCAATTTACTTTA | 58.764 | 33.333 | 0.00 | 0.00 | 35.57 | 1.85 |
353 | 354 | 4.853924 | ACATGCTAAACAGGTTTTGAGG | 57.146 | 40.909 | 9.88 | 2.18 | 41.41 | 3.86 |
355 | 356 | 4.649218 | ACATGCTAAACAGGTTTTGAGGTT | 59.351 | 37.500 | 9.88 | 0.00 | 41.41 | 3.50 |
415 | 416 | 3.521524 | AACAGAGCGACGACATTTTTC | 57.478 | 42.857 | 0.00 | 0.00 | 0.00 | 2.29 |
423 | 424 | 2.310577 | GACGACATTTTTCAGCAGTGC | 58.689 | 47.619 | 7.13 | 7.13 | 0.00 | 4.40 |
549 | 1067 | 0.664166 | GCCTTTGACGCCATGTTGTG | 60.664 | 55.000 | 0.00 | 0.00 | 0.00 | 3.33 |
672 | 1527 | 2.125512 | GCGCCTGATGACCTTCGT | 60.126 | 61.111 | 0.00 | 0.00 | 0.00 | 3.85 |
718 | 1573 | 8.206867 | CAGGATGACTAAATCTATTCACCAGAA | 58.793 | 37.037 | 0.00 | 0.00 | 39.69 | 3.02 |
731 | 1586 | 3.808728 | TCACCAGAAAGGAGTTCACAAG | 58.191 | 45.455 | 0.00 | 0.00 | 41.22 | 3.16 |
732 | 1587 | 2.880890 | CACCAGAAAGGAGTTCACAAGG | 59.119 | 50.000 | 0.00 | 0.00 | 41.22 | 3.61 |
733 | 1588 | 2.777692 | ACCAGAAAGGAGTTCACAAGGA | 59.222 | 45.455 | 0.00 | 0.00 | 41.22 | 3.36 |
734 | 1589 | 3.181450 | ACCAGAAAGGAGTTCACAAGGAG | 60.181 | 47.826 | 0.00 | 0.00 | 41.22 | 3.69 |
748 | 1604 | 6.202516 | TCACAAGGAGTAAAAACAAACAGG | 57.797 | 37.500 | 0.00 | 0.00 | 0.00 | 4.00 |
773 | 1629 | 6.882768 | AGGAGTTCATATTTTCCTCACTCT | 57.117 | 37.500 | 0.00 | 0.00 | 35.11 | 3.24 |
774 | 1630 | 6.883744 | AGGAGTTCATATTTTCCTCACTCTC | 58.116 | 40.000 | 0.00 | 0.00 | 35.11 | 3.20 |
786 | 1642 | 4.467107 | ACTCTCCCGCCCCCTCTC | 62.467 | 72.222 | 0.00 | 0.00 | 0.00 | 3.20 |
817 | 1973 | 3.841255 | TCCAAAGTCCAAAACAAAACCCT | 59.159 | 39.130 | 0.00 | 0.00 | 0.00 | 4.34 |
818 | 1974 | 4.287326 | TCCAAAGTCCAAAACAAAACCCTT | 59.713 | 37.500 | 0.00 | 0.00 | 0.00 | 3.95 |
819 | 1975 | 4.634004 | CCAAAGTCCAAAACAAAACCCTTC | 59.366 | 41.667 | 0.00 | 0.00 | 0.00 | 3.46 |
820 | 1976 | 5.487433 | CAAAGTCCAAAACAAAACCCTTCT | 58.513 | 37.500 | 0.00 | 0.00 | 0.00 | 2.85 |
842 | 2080 | 2.779471 | CCGTCTTTTGTAACAAACGCAC | 59.221 | 45.455 | 0.00 | 0.00 | 0.00 | 5.34 |
884 | 2122 | 1.472480 | CCAACAAACAAGCCCTATCCG | 59.528 | 52.381 | 0.00 | 0.00 | 0.00 | 4.18 |
922 | 2160 | 1.219131 | AAACCCTATCCCACCCACCC | 61.219 | 60.000 | 0.00 | 0.00 | 0.00 | 4.61 |
931 | 2169 | 2.436109 | CACCCACCCACCTCCAAG | 59.564 | 66.667 | 0.00 | 0.00 | 0.00 | 3.61 |
946 | 2184 | 3.070015 | CCTCCAAGAAACCAGCAACAAAT | 59.930 | 43.478 | 0.00 | 0.00 | 0.00 | 2.32 |
948 | 2186 | 3.960102 | TCCAAGAAACCAGCAACAAATCT | 59.040 | 39.130 | 0.00 | 0.00 | 0.00 | 2.40 |
1002 | 2244 | 1.221466 | CGGCCGGGCGCATATATATG | 61.221 | 60.000 | 38.10 | 17.01 | 40.31 | 1.78 |
1053 | 2295 | 0.677288 | CAGTCGACACCAGTAACCCA | 59.323 | 55.000 | 19.50 | 0.00 | 0.00 | 4.51 |
1087 | 2329 | 3.818787 | CAGCCATGGCCACTTCGC | 61.819 | 66.667 | 33.14 | 7.40 | 43.17 | 4.70 |
1100 | 2342 | 4.357947 | TTCGCCGTCGAGCAGCTT | 62.358 | 61.111 | 0.00 | 0.00 | 46.34 | 3.74 |
1399 | 4060 | 7.506328 | TTGTTTAGTAGATGCGATCTAGCTA | 57.494 | 36.000 | 6.23 | 0.00 | 42.20 | 3.32 |
1402 | 4063 | 8.237949 | TGTTTAGTAGATGCGATCTAGCTAATC | 58.762 | 37.037 | 16.82 | 16.32 | 42.20 | 1.75 |
1406 | 4076 | 5.058149 | AGATGCGATCTAGCTAATCAGTG | 57.942 | 43.478 | 13.05 | 0.00 | 38.00 | 3.66 |
1407 | 4077 | 4.522405 | AGATGCGATCTAGCTAATCAGTGT | 59.478 | 41.667 | 13.05 | 1.26 | 38.00 | 3.55 |
1408 | 4078 | 5.707764 | AGATGCGATCTAGCTAATCAGTGTA | 59.292 | 40.000 | 13.05 | 2.13 | 38.00 | 2.90 |
1409 | 4079 | 5.109662 | TGCGATCTAGCTAATCAGTGTAC | 57.890 | 43.478 | 13.05 | 0.00 | 38.13 | 2.90 |
1410 | 4080 | 4.578928 | TGCGATCTAGCTAATCAGTGTACA | 59.421 | 41.667 | 13.05 | 0.00 | 38.13 | 2.90 |
1417 | 4087 | 8.577048 | TCTAGCTAATCAGTGTACACTTAGTT | 57.423 | 34.615 | 25.89 | 22.17 | 40.20 | 2.24 |
1419 | 4089 | 9.719279 | CTAGCTAATCAGTGTACACTTAGTTAC | 57.281 | 37.037 | 25.89 | 13.98 | 40.20 | 2.50 |
1430 | 4100 | 7.758528 | GTGTACACTTAGTTACTCGATCCATTT | 59.241 | 37.037 | 18.92 | 0.00 | 0.00 | 2.32 |
1455 | 4125 | 3.284617 | TCCATTGAGTTCCATGCATGAG | 58.715 | 45.455 | 28.31 | 17.31 | 0.00 | 2.90 |
1467 | 4137 | 7.994911 | AGTTCCATGCATGAGATGAAACTAATA | 59.005 | 33.333 | 28.31 | 2.14 | 0.00 | 0.98 |
1469 | 4139 | 8.929260 | TCCATGCATGAGATGAAACTAATATT | 57.071 | 30.769 | 28.31 | 0.00 | 0.00 | 1.28 |
1470 | 4140 | 8.789762 | TCCATGCATGAGATGAAACTAATATTG | 58.210 | 33.333 | 28.31 | 4.51 | 0.00 | 1.90 |
1471 | 4141 | 8.027189 | CCATGCATGAGATGAAACTAATATTGG | 58.973 | 37.037 | 28.31 | 1.42 | 0.00 | 3.16 |
1472 | 4142 | 8.789762 | CATGCATGAGATGAAACTAATATTGGA | 58.210 | 33.333 | 22.59 | 0.00 | 0.00 | 3.53 |
1473 | 4143 | 8.929260 | TGCATGAGATGAAACTAATATTGGAT | 57.071 | 30.769 | 5.74 | 0.00 | 0.00 | 3.41 |
1513 | 4193 | 2.064581 | GTCCGTGGGGTATGGAGCT | 61.065 | 63.158 | 0.00 | 0.00 | 45.11 | 4.09 |
1608 | 4288 | 5.047519 | ACAAAGGTACGCACTAGTTACATCT | 60.048 | 40.000 | 0.00 | 0.00 | 0.00 | 2.90 |
1860 | 5540 | 5.708736 | TCCTTTCATGGCATTAAGAGGTA | 57.291 | 39.130 | 16.70 | 3.75 | 0.00 | 3.08 |
1864 | 5544 | 6.016777 | CCTTTCATGGCATTAAGAGGTATGAC | 60.017 | 42.308 | 16.70 | 0.00 | 0.00 | 3.06 |
1873 | 5553 | 8.230486 | GGCATTAAGAGGTATGACAATTAATCG | 58.770 | 37.037 | 0.00 | 0.00 | 29.93 | 3.34 |
1879 | 5559 | 7.607250 | AGAGGTATGACAATTAATCGGATCTC | 58.393 | 38.462 | 0.00 | 0.00 | 0.00 | 2.75 |
2084 | 5962 | 1.072159 | CAAGGGGATCCTGATCGGC | 59.928 | 63.158 | 12.58 | 0.00 | 44.07 | 5.54 |
2159 | 6037 | 4.129737 | CACGCGGTGGTCTCGGAT | 62.130 | 66.667 | 12.47 | 0.00 | 0.00 | 4.18 |
2612 | 6559 | 2.905681 | GGTATCCGGGTGTGGGTC | 59.094 | 66.667 | 0.00 | 0.00 | 0.00 | 4.46 |
2771 | 6718 | 2.022129 | GCTCACCTTCGTCACCGTG | 61.022 | 63.158 | 0.00 | 0.00 | 35.01 | 4.94 |
2882 | 6829 | 1.108776 | AGGCCATCGTCGCTTAGTTA | 58.891 | 50.000 | 5.01 | 0.00 | 0.00 | 2.24 |
2883 | 6830 | 1.067212 | AGGCCATCGTCGCTTAGTTAG | 59.933 | 52.381 | 5.01 | 0.00 | 0.00 | 2.34 |
2884 | 6831 | 1.202382 | GGCCATCGTCGCTTAGTTAGT | 60.202 | 52.381 | 0.00 | 0.00 | 0.00 | 2.24 |
2886 | 6833 | 2.534757 | GCCATCGTCGCTTAGTTAGTTC | 59.465 | 50.000 | 0.00 | 0.00 | 0.00 | 3.01 |
2887 | 6834 | 2.782192 | CCATCGTCGCTTAGTTAGTTCG | 59.218 | 50.000 | 0.00 | 0.00 | 0.00 | 3.95 |
2997 | 6946 | 5.845985 | TGTGAGCTGAAAATTAGTTCGAG | 57.154 | 39.130 | 0.00 | 0.00 | 0.00 | 4.04 |
2998 | 6947 | 5.297547 | TGTGAGCTGAAAATTAGTTCGAGT | 58.702 | 37.500 | 0.00 | 0.00 | 0.00 | 4.18 |
2999 | 6948 | 5.758296 | TGTGAGCTGAAAATTAGTTCGAGTT | 59.242 | 36.000 | 0.00 | 0.00 | 0.00 | 3.01 |
3025 | 6975 | 5.495926 | TTCTCTCTCCAAAAAGAGCTCAT | 57.504 | 39.130 | 17.77 | 0.00 | 42.15 | 2.90 |
3026 | 6976 | 5.495926 | TCTCTCTCCAAAAAGAGCTCATT | 57.504 | 39.130 | 17.77 | 7.57 | 42.15 | 2.57 |
3064 | 7014 | 9.762381 | TTTTCCCACTTAATTAATAGGACATGT | 57.238 | 29.630 | 14.48 | 0.00 | 0.00 | 3.21 |
3078 | 7031 | 4.104086 | AGGACATGTGATCTCCTTGGTTA | 58.896 | 43.478 | 1.15 | 0.00 | 29.41 | 2.85 |
3079 | 7032 | 4.163078 | AGGACATGTGATCTCCTTGGTTAG | 59.837 | 45.833 | 1.15 | 0.00 | 29.41 | 2.34 |
3080 | 7033 | 4.080863 | GGACATGTGATCTCCTTGGTTAGT | 60.081 | 45.833 | 1.15 | 0.00 | 0.00 | 2.24 |
3081 | 7034 | 5.491982 | GACATGTGATCTCCTTGGTTAGTT | 58.508 | 41.667 | 1.15 | 0.00 | 0.00 | 2.24 |
3082 | 7035 | 5.491982 | ACATGTGATCTCCTTGGTTAGTTC | 58.508 | 41.667 | 0.00 | 0.00 | 0.00 | 3.01 |
3083 | 7036 | 5.249393 | ACATGTGATCTCCTTGGTTAGTTCT | 59.751 | 40.000 | 0.00 | 0.00 | 0.00 | 3.01 |
3087 | 7040 | 3.040147 | TCTCCTTGGTTAGTTCTTGCG | 57.960 | 47.619 | 0.00 | 0.00 | 0.00 | 4.85 |
3089 | 7042 | 3.139077 | CTCCTTGGTTAGTTCTTGCGTT | 58.861 | 45.455 | 0.00 | 0.00 | 0.00 | 4.84 |
3090 | 7043 | 3.547746 | TCCTTGGTTAGTTCTTGCGTTT | 58.452 | 40.909 | 0.00 | 0.00 | 0.00 | 3.60 |
3091 | 7044 | 3.314080 | TCCTTGGTTAGTTCTTGCGTTTG | 59.686 | 43.478 | 0.00 | 0.00 | 0.00 | 2.93 |
3092 | 7045 | 3.314080 | CCTTGGTTAGTTCTTGCGTTTGA | 59.686 | 43.478 | 0.00 | 0.00 | 0.00 | 2.69 |
3093 | 7046 | 4.023193 | CCTTGGTTAGTTCTTGCGTTTGAT | 60.023 | 41.667 | 0.00 | 0.00 | 0.00 | 2.57 |
3094 | 7047 | 4.742438 | TGGTTAGTTCTTGCGTTTGATC | 57.258 | 40.909 | 0.00 | 0.00 | 0.00 | 2.92 |
3095 | 7048 | 4.385825 | TGGTTAGTTCTTGCGTTTGATCT | 58.614 | 39.130 | 0.00 | 0.00 | 0.00 | 2.75 |
3096 | 7049 | 4.819630 | TGGTTAGTTCTTGCGTTTGATCTT | 59.180 | 37.500 | 0.00 | 0.00 | 0.00 | 2.40 |
3097 | 7050 | 5.147162 | GGTTAGTTCTTGCGTTTGATCTTG | 58.853 | 41.667 | 0.00 | 0.00 | 0.00 | 3.02 |
3098 | 7051 | 3.273919 | AGTTCTTGCGTTTGATCTTGC | 57.726 | 42.857 | 0.00 | 0.00 | 0.00 | 4.01 |
3099 | 7052 | 1.971962 | GTTCTTGCGTTTGATCTTGCG | 59.028 | 47.619 | 0.00 | 0.00 | 0.00 | 4.85 |
3151 | 7107 | 0.521242 | CTAGTTGCGTGCAATTCGGC | 60.521 | 55.000 | 10.85 | 0.00 | 38.28 | 5.54 |
3195 | 7151 | 7.749539 | AAAAACTGTACAATTTCAGGTTTCG | 57.250 | 32.000 | 2.31 | 0.00 | 46.47 | 3.46 |
3201 | 7157 | 5.918011 | TGTACAATTTCAGGTTTCGAAATGC | 59.082 | 36.000 | 14.69 | 1.65 | 41.16 | 3.56 |
3202 | 7158 | 4.306600 | ACAATTTCAGGTTTCGAAATGCC | 58.693 | 39.130 | 14.69 | 11.50 | 41.16 | 4.40 |
3204 | 7160 | 4.806640 | ATTTCAGGTTTCGAAATGCCAT | 57.193 | 36.364 | 14.69 | 0.00 | 40.64 | 4.40 |
3208 | 7164 | 4.331968 | TCAGGTTTCGAAATGCCATAACT | 58.668 | 39.130 | 14.69 | 0.00 | 0.00 | 2.24 |
3218 | 7174 | 5.376854 | AAATGCCATAACTATCCAATCGC | 57.623 | 39.130 | 0.00 | 0.00 | 0.00 | 4.58 |
3219 | 7175 | 3.483808 | TGCCATAACTATCCAATCGCA | 57.516 | 42.857 | 0.00 | 0.00 | 0.00 | 5.10 |
3220 | 7176 | 4.019792 | TGCCATAACTATCCAATCGCAT | 57.980 | 40.909 | 0.00 | 0.00 | 0.00 | 4.73 |
3231 | 7187 | 3.950397 | TCCAATCGCATACTTCAAACCT | 58.050 | 40.909 | 0.00 | 0.00 | 0.00 | 3.50 |
3232 | 7188 | 5.092554 | TCCAATCGCATACTTCAAACCTA | 57.907 | 39.130 | 0.00 | 0.00 | 0.00 | 3.08 |
3234 | 7190 | 5.105106 | TCCAATCGCATACTTCAAACCTAGA | 60.105 | 40.000 | 0.00 | 0.00 | 0.00 | 2.43 |
3235 | 7191 | 5.235186 | CCAATCGCATACTTCAAACCTAGAG | 59.765 | 44.000 | 0.00 | 0.00 | 0.00 | 2.43 |
3236 | 7192 | 5.599999 | ATCGCATACTTCAAACCTAGAGT | 57.400 | 39.130 | 0.00 | 0.00 | 0.00 | 3.24 |
3237 | 7193 | 5.401531 | TCGCATACTTCAAACCTAGAGTT | 57.598 | 39.130 | 0.00 | 0.00 | 41.81 | 3.01 |
3238 | 7194 | 5.168569 | TCGCATACTTCAAACCTAGAGTTG | 58.831 | 41.667 | 0.00 | 0.00 | 39.19 | 3.16 |
3239 | 7195 | 4.201724 | CGCATACTTCAAACCTAGAGTTGC | 60.202 | 45.833 | 0.00 | 0.00 | 39.19 | 4.17 |
3240 | 7196 | 4.201724 | GCATACTTCAAACCTAGAGTTGCG | 60.202 | 45.833 | 0.00 | 0.00 | 39.19 | 4.85 |
3241 | 7197 | 2.143925 | ACTTCAAACCTAGAGTTGCGC | 58.856 | 47.619 | 0.00 | 0.00 | 39.19 | 6.09 |
3242 | 7198 | 2.224305 | ACTTCAAACCTAGAGTTGCGCT | 60.224 | 45.455 | 9.73 | 0.00 | 39.19 | 5.92 |
3243 | 7199 | 3.006537 | ACTTCAAACCTAGAGTTGCGCTA | 59.993 | 43.478 | 9.73 | 0.00 | 39.19 | 4.26 |
3244 | 7200 | 3.232213 | TCAAACCTAGAGTTGCGCTAG | 57.768 | 47.619 | 9.73 | 0.62 | 39.19 | 3.42 |
3245 | 7201 | 2.823747 | TCAAACCTAGAGTTGCGCTAGA | 59.176 | 45.455 | 9.73 | 0.00 | 39.19 | 2.43 |
3246 | 7202 | 3.257375 | TCAAACCTAGAGTTGCGCTAGAA | 59.743 | 43.478 | 9.73 | 0.00 | 39.19 | 2.10 |
3247 | 7203 | 4.081642 | TCAAACCTAGAGTTGCGCTAGAAT | 60.082 | 41.667 | 9.73 | 0.00 | 39.19 | 2.40 |
3248 | 7204 | 4.473477 | AACCTAGAGTTGCGCTAGAATT | 57.527 | 40.909 | 9.73 | 0.00 | 36.26 | 2.17 |
3249 | 7205 | 4.473477 | ACCTAGAGTTGCGCTAGAATTT | 57.527 | 40.909 | 9.73 | 0.00 | 36.26 | 1.82 |
3250 | 7206 | 4.833390 | ACCTAGAGTTGCGCTAGAATTTT | 58.167 | 39.130 | 9.73 | 0.00 | 36.26 | 1.82 |
3251 | 7207 | 5.246307 | ACCTAGAGTTGCGCTAGAATTTTT | 58.754 | 37.500 | 9.73 | 0.00 | 36.26 | 1.94 |
3275 | 7231 | 8.462143 | TTTTTACGTGCAAATGTAGTTTCAAA | 57.538 | 26.923 | 0.00 | 0.00 | 0.00 | 2.69 |
3276 | 7232 | 8.462143 | TTTTACGTGCAAATGTAGTTTCAAAA | 57.538 | 26.923 | 0.00 | 0.00 | 0.00 | 2.44 |
3277 | 7233 | 7.672351 | TTACGTGCAAATGTAGTTTCAAAAG | 57.328 | 32.000 | 0.00 | 0.00 | 0.00 | 2.27 |
3278 | 7234 | 5.040635 | ACGTGCAAATGTAGTTTCAAAAGG | 58.959 | 37.500 | 0.00 | 0.00 | 0.00 | 3.11 |
3279 | 7235 | 5.040635 | CGTGCAAATGTAGTTTCAAAAGGT | 58.959 | 37.500 | 0.00 | 0.00 | 0.00 | 3.50 |
3280 | 7236 | 5.051774 | CGTGCAAATGTAGTTTCAAAAGGTG | 60.052 | 40.000 | 0.00 | 0.00 | 0.00 | 4.00 |
3281 | 7237 | 4.808364 | TGCAAATGTAGTTTCAAAAGGTGC | 59.192 | 37.500 | 0.00 | 0.00 | 0.00 | 5.01 |
3282 | 7238 | 4.808364 | GCAAATGTAGTTTCAAAAGGTGCA | 59.192 | 37.500 | 0.00 | 0.00 | 0.00 | 4.57 |
3283 | 7239 | 5.050837 | GCAAATGTAGTTTCAAAAGGTGCAG | 60.051 | 40.000 | 0.00 | 0.00 | 0.00 | 4.41 |
3284 | 7240 | 3.708563 | TGTAGTTTCAAAAGGTGCAGC | 57.291 | 42.857 | 8.11 | 8.11 | 0.00 | 5.25 |
3285 | 7241 | 3.287222 | TGTAGTTTCAAAAGGTGCAGCT | 58.713 | 40.909 | 13.85 | 13.85 | 0.00 | 4.24 |
3286 | 7242 | 2.877043 | AGTTTCAAAAGGTGCAGCTG | 57.123 | 45.000 | 20.97 | 10.11 | 0.00 | 4.24 |
3287 | 7243 | 1.202452 | AGTTTCAAAAGGTGCAGCTGC | 60.202 | 47.619 | 31.89 | 31.89 | 42.50 | 5.25 |
3298 | 7254 | 3.740384 | GCAGCTGCAACAAAATTGC | 57.260 | 47.368 | 33.36 | 1.56 | 45.11 | 3.56 |
3309 | 7265 | 6.768029 | GCAACAAAATTGCACATCTCTTAA | 57.232 | 33.333 | 6.75 | 0.00 | 44.34 | 1.85 |
3353 | 7316 | 7.847487 | TGAGTATATACGCAACTACAAAATGC | 58.153 | 34.615 | 15.87 | 0.00 | 33.11 | 3.56 |
3364 | 7386 | 9.877137 | CGCAACTACAAAATGCTATAATGATAA | 57.123 | 29.630 | 0.00 | 0.00 | 37.92 | 1.75 |
3437 | 7473 | 5.818678 | AGTCCATTAACACAGTGTAGGAA | 57.181 | 39.130 | 6.63 | 2.38 | 0.00 | 3.36 |
3450 | 7486 | 1.079503 | GTAGGAAGGTGAGCGCAAAG | 58.920 | 55.000 | 11.47 | 0.00 | 0.00 | 2.77 |
3454 | 7490 | 1.067060 | GGAAGGTGAGCGCAAAGTTTT | 59.933 | 47.619 | 11.47 | 0.00 | 0.00 | 2.43 |
3458 | 7494 | 3.146066 | AGGTGAGCGCAAAGTTTTCATA | 58.854 | 40.909 | 11.47 | 0.00 | 0.00 | 2.15 |
3463 | 7499 | 6.751888 | GGTGAGCGCAAAGTTTTCATATTATT | 59.248 | 34.615 | 11.47 | 0.00 | 0.00 | 1.40 |
3465 | 7501 | 6.972328 | TGAGCGCAAAGTTTTCATATTATTCC | 59.028 | 34.615 | 11.47 | 0.00 | 0.00 | 3.01 |
3495 | 7531 | 6.866248 | GCATAGCTAGAACTTACTCTCATTCC | 59.134 | 42.308 | 0.00 | 0.00 | 0.00 | 3.01 |
3504 | 7540 | 2.376808 | ACTCTCATTCCACGCAAGAG | 57.623 | 50.000 | 0.00 | 0.00 | 43.62 | 2.85 |
3532 | 7568 | 9.710979 | TGTCACTTAAAAAGTTGATTTAGTTCG | 57.289 | 29.630 | 0.00 | 0.00 | 40.46 | 3.95 |
3581 | 7618 | 2.280628 | CGCATTTCCAAGTACTCCCTC | 58.719 | 52.381 | 0.00 | 0.00 | 0.00 | 4.30 |
3582 | 7619 | 2.093447 | CGCATTTCCAAGTACTCCCTCT | 60.093 | 50.000 | 0.00 | 0.00 | 0.00 | 3.69 |
3587 | 7624 | 4.338795 | TTCCAAGTACTCCCTCTGATCT | 57.661 | 45.455 | 0.00 | 0.00 | 0.00 | 2.75 |
3592 | 7629 | 7.406916 | TCCAAGTACTCCCTCTGATCTATATC | 58.593 | 42.308 | 0.00 | 0.00 | 0.00 | 1.63 |
3597 | 7634 | 7.888021 | AGTACTCCCTCTGATCTATATCACTTG | 59.112 | 40.741 | 0.00 | 0.00 | 37.20 | 3.16 |
3608 | 7645 | 6.647212 | TCTATATCACTTGTTGCTCAAACG | 57.353 | 37.500 | 0.00 | 0.00 | 42.10 | 3.60 |
3620 | 7657 | 7.197071 | TGTTGCTCAAACGACAAGTAATATT | 57.803 | 32.000 | 0.00 | 0.00 | 42.10 | 1.28 |
3624 | 7661 | 8.039603 | TGCTCAAACGACAAGTAATATTGATT | 57.960 | 30.769 | 0.00 | 0.00 | 34.20 | 2.57 |
3625 | 7662 | 7.962373 | TGCTCAAACGACAAGTAATATTGATTG | 59.038 | 33.333 | 11.05 | 11.05 | 34.20 | 2.67 |
3629 | 7666 | 8.450964 | CAAACGACAAGTAATATTGATTGGAGT | 58.549 | 33.333 | 15.05 | 11.96 | 34.20 | 3.85 |
3632 | 7669 | 7.987458 | ACGACAAGTAATATTGATTGGAGTGAT | 59.013 | 33.333 | 15.05 | 0.00 | 34.20 | 3.06 |
3709 | 7746 | 3.774766 | TGGCTTAAGAATCTCCACTAGCA | 59.225 | 43.478 | 6.67 | 0.00 | 0.00 | 3.49 |
3710 | 7747 | 4.141846 | TGGCTTAAGAATCTCCACTAGCAG | 60.142 | 45.833 | 6.67 | 0.00 | 0.00 | 4.24 |
3726 | 7763 | 1.617850 | AGCAGAGAGAACTCCACACAG | 59.382 | 52.381 | 0.00 | 0.00 | 43.53 | 3.66 |
3814 | 9760 | 6.189859 | TCCATTACCAAAGAGAAATCTGCAT | 58.810 | 36.000 | 0.00 | 0.00 | 0.00 | 3.96 |
3854 | 9800 | 4.801891 | TCTGGTAAACGGTATATCGATGC | 58.198 | 43.478 | 13.38 | 4.08 | 0.00 | 3.91 |
3858 | 9804 | 5.106197 | TGGTAAACGGTATATCGATGCGTAT | 60.106 | 40.000 | 13.38 | 0.00 | 0.00 | 3.06 |
3859 | 9805 | 5.801947 | GGTAAACGGTATATCGATGCGTATT | 59.198 | 40.000 | 13.38 | 0.00 | 0.00 | 1.89 |
3860 | 9806 | 5.756950 | AAACGGTATATCGATGCGTATTG | 57.243 | 39.130 | 13.38 | 0.00 | 0.00 | 1.90 |
3861 | 9807 | 3.176708 | ACGGTATATCGATGCGTATTGC | 58.823 | 45.455 | 13.38 | 0.00 | 46.70 | 3.56 |
3877 | 9823 | 3.230990 | GCACAGGGCGGGGTTTTT | 61.231 | 61.111 | 0.00 | 0.00 | 0.00 | 1.94 |
3878 | 9824 | 1.904378 | GCACAGGGCGGGGTTTTTA | 60.904 | 57.895 | 0.00 | 0.00 | 0.00 | 1.52 |
3879 | 9825 | 1.465200 | GCACAGGGCGGGGTTTTTAA | 61.465 | 55.000 | 0.00 | 0.00 | 0.00 | 1.52 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
2 | 3 | 9.033481 | CCGTAACTCCGATTTAAACATGTTATA | 57.967 | 33.333 | 12.39 | 4.12 | 0.00 | 0.98 |
4 | 5 | 6.873076 | ACCGTAACTCCGATTTAAACATGTTA | 59.127 | 34.615 | 12.39 | 0.00 | 0.00 | 2.41 |
5 | 6 | 5.702209 | ACCGTAACTCCGATTTAAACATGTT | 59.298 | 36.000 | 4.92 | 4.92 | 0.00 | 2.71 |
8 | 9 | 6.806388 | AAACCGTAACTCCGATTTAAACAT | 57.194 | 33.333 | 0.00 | 0.00 | 0.00 | 2.71 |
9 | 10 | 7.721286 | TTAAACCGTAACTCCGATTTAAACA | 57.279 | 32.000 | 0.00 | 0.00 | 0.00 | 2.83 |
10 | 11 | 9.106286 | CTTTTAAACCGTAACTCCGATTTAAAC | 57.894 | 33.333 | 5.39 | 0.00 | 33.53 | 2.01 |
11 | 12 | 9.050601 | TCTTTTAAACCGTAACTCCGATTTAAA | 57.949 | 29.630 | 2.42 | 2.42 | 32.51 | 1.52 |
13 | 14 | 8.776376 | ATCTTTTAAACCGTAACTCCGATTTA | 57.224 | 30.769 | 0.00 | 0.00 | 0.00 | 1.40 |
14 | 15 | 7.677454 | ATCTTTTAAACCGTAACTCCGATTT | 57.323 | 32.000 | 0.00 | 0.00 | 0.00 | 2.17 |
15 | 16 | 8.823818 | CATATCTTTTAAACCGTAACTCCGATT | 58.176 | 33.333 | 0.00 | 0.00 | 0.00 | 3.34 |
16 | 17 | 7.440255 | CCATATCTTTTAAACCGTAACTCCGAT | 59.560 | 37.037 | 0.00 | 0.00 | 0.00 | 4.18 |
17 | 18 | 6.757947 | CCATATCTTTTAAACCGTAACTCCGA | 59.242 | 38.462 | 0.00 | 0.00 | 0.00 | 4.55 |
18 | 19 | 6.757947 | TCCATATCTTTTAAACCGTAACTCCG | 59.242 | 38.462 | 0.00 | 0.00 | 0.00 | 4.63 |
19 | 20 | 8.557029 | CATCCATATCTTTTAAACCGTAACTCC | 58.443 | 37.037 | 0.00 | 0.00 | 0.00 | 3.85 |
20 | 21 | 9.321562 | TCATCCATATCTTTTAAACCGTAACTC | 57.678 | 33.333 | 0.00 | 0.00 | 0.00 | 3.01 |
21 | 22 | 9.847224 | ATCATCCATATCTTTTAAACCGTAACT | 57.153 | 29.630 | 0.00 | 0.00 | 0.00 | 2.24 |
40 | 41 | 9.947669 | CAAACAAATGCTTTTTAAAATCATCCA | 57.052 | 25.926 | 7.14 | 3.95 | 0.00 | 3.41 |
55 | 56 | 9.807649 | GGATCATATTTAAGTCAAACAAATGCT | 57.192 | 29.630 | 0.00 | 0.00 | 0.00 | 3.79 |
56 | 57 | 8.745837 | CGGATCATATTTAAGTCAAACAAATGC | 58.254 | 33.333 | 0.00 | 0.00 | 0.00 | 3.56 |
57 | 58 | 9.787532 | ACGGATCATATTTAAGTCAAACAAATG | 57.212 | 29.630 | 0.00 | 0.00 | 0.00 | 2.32 |
58 | 59 | 9.787532 | CACGGATCATATTTAAGTCAAACAAAT | 57.212 | 29.630 | 0.00 | 0.00 | 0.00 | 2.32 |
59 | 60 | 8.240682 | CCACGGATCATATTTAAGTCAAACAAA | 58.759 | 33.333 | 0.00 | 0.00 | 0.00 | 2.83 |
60 | 61 | 7.608376 | TCCACGGATCATATTTAAGTCAAACAA | 59.392 | 33.333 | 0.00 | 0.00 | 0.00 | 2.83 |
61 | 62 | 7.106890 | TCCACGGATCATATTTAAGTCAAACA | 58.893 | 34.615 | 0.00 | 0.00 | 0.00 | 2.83 |
62 | 63 | 7.548196 | TCCACGGATCATATTTAAGTCAAAC | 57.452 | 36.000 | 0.00 | 0.00 | 0.00 | 2.93 |
63 | 64 | 7.990314 | TCATCCACGGATCATATTTAAGTCAAA | 59.010 | 33.333 | 0.00 | 0.00 | 31.62 | 2.69 |
64 | 65 | 7.505258 | TCATCCACGGATCATATTTAAGTCAA | 58.495 | 34.615 | 0.00 | 0.00 | 31.62 | 3.18 |
65 | 66 | 7.061566 | TCATCCACGGATCATATTTAAGTCA | 57.938 | 36.000 | 0.00 | 0.00 | 31.62 | 3.41 |
66 | 67 | 7.962964 | TTCATCCACGGATCATATTTAAGTC | 57.037 | 36.000 | 0.00 | 0.00 | 31.62 | 3.01 |
67 | 68 | 8.924511 | AATTCATCCACGGATCATATTTAAGT | 57.075 | 30.769 | 0.00 | 0.00 | 31.62 | 2.24 |
69 | 70 | 9.226606 | GGTAATTCATCCACGGATCATATTTAA | 57.773 | 33.333 | 0.00 | 0.00 | 31.62 | 1.52 |
70 | 71 | 8.602424 | AGGTAATTCATCCACGGATCATATTTA | 58.398 | 33.333 | 0.00 | 0.00 | 31.62 | 1.40 |
71 | 72 | 7.461749 | AGGTAATTCATCCACGGATCATATTT | 58.538 | 34.615 | 0.00 | 0.00 | 31.62 | 1.40 |
72 | 73 | 7.020827 | AGGTAATTCATCCACGGATCATATT | 57.979 | 36.000 | 0.00 | 0.00 | 31.62 | 1.28 |
73 | 74 | 6.627087 | AGGTAATTCATCCACGGATCATAT | 57.373 | 37.500 | 0.00 | 0.00 | 31.62 | 1.78 |
74 | 75 | 7.547697 | TTAGGTAATTCATCCACGGATCATA | 57.452 | 36.000 | 0.00 | 0.00 | 31.62 | 2.15 |
75 | 76 | 4.982241 | AGGTAATTCATCCACGGATCAT | 57.018 | 40.909 | 0.00 | 0.00 | 31.62 | 2.45 |
76 | 77 | 5.880164 | TTAGGTAATTCATCCACGGATCA | 57.120 | 39.130 | 0.00 | 0.00 | 31.62 | 2.92 |
77 | 78 | 6.540914 | TGTTTTAGGTAATTCATCCACGGATC | 59.459 | 38.462 | 0.00 | 0.00 | 31.62 | 3.36 |
78 | 79 | 6.419791 | TGTTTTAGGTAATTCATCCACGGAT | 58.580 | 36.000 | 0.00 | 0.00 | 34.81 | 4.18 |
79 | 80 | 5.806818 | TGTTTTAGGTAATTCATCCACGGA | 58.193 | 37.500 | 0.00 | 0.00 | 0.00 | 4.69 |
80 | 81 | 6.317642 | TGATGTTTTAGGTAATTCATCCACGG | 59.682 | 38.462 | 0.00 | 0.00 | 33.20 | 4.94 |
81 | 82 | 7.315247 | TGATGTTTTAGGTAATTCATCCACG | 57.685 | 36.000 | 0.00 | 0.00 | 33.20 | 4.94 |
82 | 83 | 7.201821 | CCCTGATGTTTTAGGTAATTCATCCAC | 60.202 | 40.741 | 0.00 | 0.00 | 33.20 | 4.02 |
83 | 84 | 6.833416 | CCCTGATGTTTTAGGTAATTCATCCA | 59.167 | 38.462 | 0.00 | 0.00 | 33.20 | 3.41 |
84 | 85 | 6.265422 | CCCCTGATGTTTTAGGTAATTCATCC | 59.735 | 42.308 | 0.00 | 0.00 | 33.20 | 3.51 |
85 | 86 | 6.265422 | CCCCCTGATGTTTTAGGTAATTCATC | 59.735 | 42.308 | 0.00 | 0.00 | 34.28 | 2.92 |
86 | 87 | 6.136155 | CCCCCTGATGTTTTAGGTAATTCAT | 58.864 | 40.000 | 0.00 | 0.00 | 31.99 | 2.57 |
87 | 88 | 5.515106 | CCCCCTGATGTTTTAGGTAATTCA | 58.485 | 41.667 | 0.00 | 0.00 | 31.99 | 2.57 |
122 | 123 | 9.793259 | AGTCACACCCGAATCATTATTTTATAT | 57.207 | 29.630 | 0.00 | 0.00 | 0.00 | 0.86 |
123 | 124 | 9.621629 | AAGTCACACCCGAATCATTATTTTATA | 57.378 | 29.630 | 0.00 | 0.00 | 0.00 | 0.98 |
124 | 125 | 8.519799 | AAGTCACACCCGAATCATTATTTTAT | 57.480 | 30.769 | 0.00 | 0.00 | 0.00 | 1.40 |
125 | 126 | 7.931578 | AAGTCACACCCGAATCATTATTTTA | 57.068 | 32.000 | 0.00 | 0.00 | 0.00 | 1.52 |
126 | 127 | 6.834168 | AAGTCACACCCGAATCATTATTTT | 57.166 | 33.333 | 0.00 | 0.00 | 0.00 | 1.82 |
127 | 128 | 7.931578 | TTAAGTCACACCCGAATCATTATTT | 57.068 | 32.000 | 0.00 | 0.00 | 0.00 | 1.40 |
128 | 129 | 7.931578 | TTTAAGTCACACCCGAATCATTATT | 57.068 | 32.000 | 0.00 | 0.00 | 0.00 | 1.40 |
129 | 130 | 7.228706 | GGATTTAAGTCACACCCGAATCATTAT | 59.771 | 37.037 | 0.03 | 0.00 | 0.00 | 1.28 |
130 | 131 | 6.540914 | GGATTTAAGTCACACCCGAATCATTA | 59.459 | 38.462 | 0.03 | 0.00 | 0.00 | 1.90 |
131 | 132 | 5.357032 | GGATTTAAGTCACACCCGAATCATT | 59.643 | 40.000 | 0.03 | 0.00 | 0.00 | 2.57 |
132 | 133 | 4.881850 | GGATTTAAGTCACACCCGAATCAT | 59.118 | 41.667 | 0.03 | 0.00 | 0.00 | 2.45 |
133 | 134 | 4.258543 | GGATTTAAGTCACACCCGAATCA | 58.741 | 43.478 | 0.03 | 0.00 | 0.00 | 2.57 |
134 | 135 | 3.308866 | CGGATTTAAGTCACACCCGAATC | 59.691 | 47.826 | 0.03 | 0.00 | 37.87 | 2.52 |
135 | 136 | 3.267483 | CGGATTTAAGTCACACCCGAAT | 58.733 | 45.455 | 0.03 | 0.00 | 37.87 | 3.34 |
136 | 137 | 2.613474 | CCGGATTTAAGTCACACCCGAA | 60.613 | 50.000 | 0.00 | 0.00 | 37.87 | 4.30 |
137 | 138 | 1.066716 | CCGGATTTAAGTCACACCCGA | 60.067 | 52.381 | 0.00 | 0.00 | 37.87 | 5.14 |
138 | 139 | 1.066716 | TCCGGATTTAAGTCACACCCG | 60.067 | 52.381 | 0.00 | 0.00 | 35.68 | 5.28 |
139 | 140 | 2.353323 | GTCCGGATTTAAGTCACACCC | 58.647 | 52.381 | 7.81 | 0.00 | 0.00 | 4.61 |
140 | 141 | 1.997606 | CGTCCGGATTTAAGTCACACC | 59.002 | 52.381 | 7.81 | 0.00 | 0.00 | 4.16 |
141 | 142 | 1.997606 | CCGTCCGGATTTAAGTCACAC | 59.002 | 52.381 | 7.81 | 0.00 | 37.50 | 3.82 |
142 | 143 | 1.673626 | GCCGTCCGGATTTAAGTCACA | 60.674 | 52.381 | 7.81 | 0.00 | 37.50 | 3.58 |
143 | 144 | 1.004595 | GCCGTCCGGATTTAAGTCAC | 58.995 | 55.000 | 7.81 | 0.00 | 37.50 | 3.67 |
144 | 145 | 0.458889 | CGCCGTCCGGATTTAAGTCA | 60.459 | 55.000 | 7.81 | 0.00 | 37.50 | 3.41 |
145 | 146 | 2.294728 | CGCCGTCCGGATTTAAGTC | 58.705 | 57.895 | 7.81 | 0.00 | 37.50 | 3.01 |
146 | 147 | 4.507879 | CGCCGTCCGGATTTAAGT | 57.492 | 55.556 | 7.81 | 0.00 | 37.50 | 2.24 |
155 | 156 | 2.744709 | AAATCAACCCGCCGTCCG | 60.745 | 61.111 | 0.00 | 0.00 | 0.00 | 4.79 |
156 | 157 | 1.238625 | TTGAAATCAACCCGCCGTCC | 61.239 | 55.000 | 0.00 | 0.00 | 0.00 | 4.79 |
157 | 158 | 0.168128 | CTTGAAATCAACCCGCCGTC | 59.832 | 55.000 | 0.00 | 0.00 | 0.00 | 4.79 |
158 | 159 | 0.250553 | TCTTGAAATCAACCCGCCGT | 60.251 | 50.000 | 0.00 | 0.00 | 0.00 | 5.68 |
159 | 160 | 0.878416 | TTCTTGAAATCAACCCGCCG | 59.122 | 50.000 | 0.00 | 0.00 | 0.00 | 6.46 |
160 | 161 | 3.005367 | TCTTTTCTTGAAATCAACCCGCC | 59.995 | 43.478 | 0.00 | 0.00 | 0.00 | 6.13 |
161 | 162 | 3.981416 | GTCTTTTCTTGAAATCAACCCGC | 59.019 | 43.478 | 0.00 | 0.00 | 0.00 | 6.13 |
162 | 163 | 5.008613 | TCTGTCTTTTCTTGAAATCAACCCG | 59.991 | 40.000 | 0.00 | 0.00 | 0.00 | 5.28 |
163 | 164 | 6.263168 | TCTCTGTCTTTTCTTGAAATCAACCC | 59.737 | 38.462 | 0.00 | 0.00 | 0.00 | 4.11 |
164 | 165 | 7.012799 | AGTCTCTGTCTTTTCTTGAAATCAACC | 59.987 | 37.037 | 0.00 | 0.00 | 0.00 | 3.77 |
165 | 166 | 7.924940 | AGTCTCTGTCTTTTCTTGAAATCAAC | 58.075 | 34.615 | 0.00 | 0.00 | 0.00 | 3.18 |
166 | 167 | 8.511604 | AAGTCTCTGTCTTTTCTTGAAATCAA | 57.488 | 30.769 | 0.00 | 0.00 | 0.00 | 2.57 |
167 | 168 | 8.511604 | AAAGTCTCTGTCTTTTCTTGAAATCA | 57.488 | 30.769 | 0.00 | 0.00 | 32.14 | 2.57 |
168 | 169 | 9.230932 | CAAAAGTCTCTGTCTTTTCTTGAAATC | 57.769 | 33.333 | 0.00 | 0.00 | 41.30 | 2.17 |
169 | 170 | 8.743714 | ACAAAAGTCTCTGTCTTTTCTTGAAAT | 58.256 | 29.630 | 0.00 | 0.00 | 41.30 | 2.17 |
170 | 171 | 8.023128 | CACAAAAGTCTCTGTCTTTTCTTGAAA | 58.977 | 33.333 | 0.00 | 0.00 | 41.30 | 2.69 |
171 | 172 | 7.174946 | ACACAAAAGTCTCTGTCTTTTCTTGAA | 59.825 | 33.333 | 12.29 | 0.00 | 41.30 | 2.69 |
172 | 173 | 6.655003 | ACACAAAAGTCTCTGTCTTTTCTTGA | 59.345 | 34.615 | 12.29 | 0.00 | 41.30 | 3.02 |
173 | 174 | 6.846350 | ACACAAAAGTCTCTGTCTTTTCTTG | 58.154 | 36.000 | 0.00 | 0.00 | 41.30 | 3.02 |
174 | 175 | 8.561738 | TTACACAAAAGTCTCTGTCTTTTCTT | 57.438 | 30.769 | 0.00 | 0.00 | 41.30 | 2.52 |
175 | 176 | 8.561738 | TTTACACAAAAGTCTCTGTCTTTTCT | 57.438 | 30.769 | 0.00 | 0.00 | 41.30 | 2.52 |
176 | 177 | 9.788960 | ATTTTACACAAAAGTCTCTGTCTTTTC | 57.211 | 29.630 | 0.00 | 0.00 | 41.30 | 2.29 |
179 | 180 | 8.548721 | CGTATTTTACACAAAAGTCTCTGTCTT | 58.451 | 33.333 | 0.00 | 0.00 | 37.08 | 3.01 |
180 | 181 | 7.924412 | TCGTATTTTACACAAAAGTCTCTGTCT | 59.076 | 33.333 | 0.00 | 0.00 | 37.08 | 3.41 |
181 | 182 | 8.068893 | TCGTATTTTACACAAAAGTCTCTGTC | 57.931 | 34.615 | 0.00 | 0.00 | 37.08 | 3.51 |
182 | 183 | 8.428186 | TTCGTATTTTACACAAAAGTCTCTGT | 57.572 | 30.769 | 0.00 | 0.00 | 37.08 | 3.41 |
183 | 184 | 9.710979 | TTTTCGTATTTTACACAAAAGTCTCTG | 57.289 | 29.630 | 0.00 | 0.00 | 37.08 | 3.35 |
220 | 221 | 4.261114 | CCGCGGTCCTGTTTTAAGTTAAAA | 60.261 | 41.667 | 19.50 | 15.29 | 35.45 | 1.52 |
221 | 222 | 3.250521 | CCGCGGTCCTGTTTTAAGTTAAA | 59.749 | 43.478 | 19.50 | 3.88 | 0.00 | 1.52 |
222 | 223 | 2.807392 | CCGCGGTCCTGTTTTAAGTTAA | 59.193 | 45.455 | 19.50 | 0.00 | 0.00 | 2.01 |
223 | 224 | 2.415776 | CCGCGGTCCTGTTTTAAGTTA | 58.584 | 47.619 | 19.50 | 0.00 | 0.00 | 2.24 |
224 | 225 | 1.232119 | CCGCGGTCCTGTTTTAAGTT | 58.768 | 50.000 | 19.50 | 0.00 | 0.00 | 2.66 |
225 | 226 | 0.604511 | CCCGCGGTCCTGTTTTAAGT | 60.605 | 55.000 | 26.12 | 0.00 | 0.00 | 2.24 |
226 | 227 | 0.604511 | ACCCGCGGTCCTGTTTTAAG | 60.605 | 55.000 | 26.12 | 6.21 | 0.00 | 1.85 |
227 | 228 | 0.179023 | AACCCGCGGTCCTGTTTTAA | 60.179 | 50.000 | 26.12 | 0.00 | 33.12 | 1.52 |
228 | 229 | 0.885596 | CAACCCGCGGTCCTGTTTTA | 60.886 | 55.000 | 26.12 | 0.00 | 33.12 | 1.52 |
229 | 230 | 2.190841 | CAACCCGCGGTCCTGTTTT | 61.191 | 57.895 | 26.12 | 2.08 | 33.12 | 2.43 |
230 | 231 | 2.593436 | CAACCCGCGGTCCTGTTT | 60.593 | 61.111 | 26.12 | 3.96 | 33.12 | 2.83 |
231 | 232 | 2.406002 | ATTCAACCCGCGGTCCTGTT | 62.406 | 55.000 | 26.12 | 17.88 | 33.12 | 3.16 |
232 | 233 | 2.406002 | AATTCAACCCGCGGTCCTGT | 62.406 | 55.000 | 26.12 | 12.13 | 33.12 | 4.00 |
233 | 234 | 1.644786 | GAATTCAACCCGCGGTCCTG | 61.645 | 60.000 | 26.12 | 17.56 | 33.12 | 3.86 |
234 | 235 | 1.376812 | GAATTCAACCCGCGGTCCT | 60.377 | 57.895 | 26.12 | 4.48 | 33.12 | 3.85 |
235 | 236 | 1.366854 | GAGAATTCAACCCGCGGTCC | 61.367 | 60.000 | 26.12 | 3.59 | 33.12 | 4.46 |
236 | 237 | 0.391263 | AGAGAATTCAACCCGCGGTC | 60.391 | 55.000 | 26.12 | 13.20 | 33.12 | 4.79 |
237 | 238 | 0.673644 | CAGAGAATTCAACCCGCGGT | 60.674 | 55.000 | 26.12 | 9.63 | 37.65 | 5.68 |
238 | 239 | 0.391130 | TCAGAGAATTCAACCCGCGG | 60.391 | 55.000 | 21.04 | 21.04 | 0.00 | 6.46 |
239 | 240 | 1.438651 | TTCAGAGAATTCAACCCGCG | 58.561 | 50.000 | 8.44 | 0.00 | 0.00 | 6.46 |
240 | 241 | 4.876107 | TCTATTTCAGAGAATTCAACCCGC | 59.124 | 41.667 | 8.44 | 0.00 | 0.00 | 6.13 |
253 | 254 | 7.808279 | TTTAGGAAAGTCCCTCTATTTCAGA | 57.192 | 36.000 | 0.00 | 0.00 | 37.19 | 3.27 |
254 | 255 | 8.863872 | TTTTTAGGAAAGTCCCTCTATTTCAG | 57.136 | 34.615 | 0.00 | 0.00 | 37.19 | 3.02 |
276 | 277 | 1.529226 | TCGTCCGTCATGGCATTTTT | 58.471 | 45.000 | 0.00 | 0.00 | 37.80 | 1.94 |
277 | 278 | 1.529226 | TTCGTCCGTCATGGCATTTT | 58.471 | 45.000 | 0.00 | 0.00 | 37.80 | 1.82 |
278 | 279 | 1.529226 | TTTCGTCCGTCATGGCATTT | 58.471 | 45.000 | 0.00 | 0.00 | 37.80 | 2.32 |
279 | 280 | 1.750193 | ATTTCGTCCGTCATGGCATT | 58.250 | 45.000 | 0.00 | 0.00 | 37.80 | 3.56 |
280 | 281 | 2.613026 | TATTTCGTCCGTCATGGCAT | 57.387 | 45.000 | 0.00 | 0.00 | 37.80 | 4.40 |
281 | 282 | 2.388310 | TTATTTCGTCCGTCATGGCA | 57.612 | 45.000 | 0.00 | 0.00 | 37.80 | 4.92 |
282 | 283 | 2.223180 | GGTTTATTTCGTCCGTCATGGC | 60.223 | 50.000 | 0.00 | 0.00 | 37.80 | 4.40 |
283 | 284 | 2.353579 | GGGTTTATTTCGTCCGTCATGG | 59.646 | 50.000 | 0.00 | 0.00 | 40.09 | 3.66 |
284 | 285 | 3.004171 | TGGGTTTATTTCGTCCGTCATG | 58.996 | 45.455 | 0.00 | 0.00 | 0.00 | 3.07 |
285 | 286 | 3.337694 | TGGGTTTATTTCGTCCGTCAT | 57.662 | 42.857 | 0.00 | 0.00 | 0.00 | 3.06 |
286 | 287 | 2.835580 | TGGGTTTATTTCGTCCGTCA | 57.164 | 45.000 | 0.00 | 0.00 | 0.00 | 4.35 |
287 | 288 | 4.690184 | AATTGGGTTTATTTCGTCCGTC | 57.310 | 40.909 | 0.00 | 0.00 | 0.00 | 4.79 |
288 | 289 | 5.706833 | AGTAAATTGGGTTTATTTCGTCCGT | 59.293 | 36.000 | 0.00 | 0.00 | 34.93 | 4.69 |
289 | 290 | 6.185852 | AGTAAATTGGGTTTATTTCGTCCG | 57.814 | 37.500 | 0.00 | 0.00 | 34.93 | 4.79 |
319 | 320 | 9.391006 | CCTGTTTAGCATGTTATCTTTACCTAA | 57.609 | 33.333 | 0.00 | 0.00 | 0.00 | 2.69 |
320 | 321 | 8.545472 | ACCTGTTTAGCATGTTATCTTTACCTA | 58.455 | 33.333 | 0.00 | 0.00 | 0.00 | 3.08 |
321 | 322 | 7.402862 | ACCTGTTTAGCATGTTATCTTTACCT | 58.597 | 34.615 | 0.00 | 0.00 | 0.00 | 3.08 |
322 | 323 | 7.625828 | ACCTGTTTAGCATGTTATCTTTACC | 57.374 | 36.000 | 0.00 | 0.00 | 0.00 | 2.85 |
323 | 324 | 9.908152 | AAAACCTGTTTAGCATGTTATCTTTAC | 57.092 | 29.630 | 0.00 | 0.00 | 35.40 | 2.01 |
324 | 325 | 9.906660 | CAAAACCTGTTTAGCATGTTATCTTTA | 57.093 | 29.630 | 0.00 | 0.00 | 35.40 | 1.85 |
325 | 326 | 8.637986 | TCAAAACCTGTTTAGCATGTTATCTTT | 58.362 | 29.630 | 0.00 | 0.00 | 35.40 | 2.52 |
326 | 327 | 8.177119 | TCAAAACCTGTTTAGCATGTTATCTT | 57.823 | 30.769 | 0.00 | 0.00 | 35.40 | 2.40 |
327 | 328 | 7.094205 | CCTCAAAACCTGTTTAGCATGTTATCT | 60.094 | 37.037 | 0.00 | 0.00 | 35.40 | 1.98 |
328 | 329 | 7.029563 | CCTCAAAACCTGTTTAGCATGTTATC | 58.970 | 38.462 | 0.00 | 0.00 | 35.40 | 1.75 |
353 | 354 | 5.878116 | TGCCACTAGACACCAATATTGTAAC | 59.122 | 40.000 | 14.25 | 3.48 | 0.00 | 2.50 |
355 | 356 | 5.685520 | TGCCACTAGACACCAATATTGTA | 57.314 | 39.130 | 14.25 | 0.00 | 0.00 | 2.41 |
383 | 384 | 1.471501 | CGCTCTGTTAGGCACATGCTA | 60.472 | 52.381 | 3.48 | 0.00 | 41.70 | 3.49 |
390 | 391 | 1.211969 | GTCGTCGCTCTGTTAGGCA | 59.788 | 57.895 | 0.00 | 0.00 | 0.00 | 4.75 |
423 | 424 | 2.031157 | CGGTTTTGCCACTAGGAGTTTG | 60.031 | 50.000 | 0.00 | 0.00 | 36.89 | 2.93 |
528 | 1046 | 0.314935 | CAACATGGCGTCAAAGGCTT | 59.685 | 50.000 | 0.00 | 0.00 | 37.59 | 4.35 |
610 | 1129 | 3.819368 | AGGGTTTTTCAAAAAGCATGGG | 58.181 | 40.909 | 22.79 | 0.00 | 31.70 | 4.00 |
672 | 1527 | 0.616371 | CCATGTCGACCCTAAACCCA | 59.384 | 55.000 | 14.12 | 0.00 | 0.00 | 4.51 |
718 | 1573 | 6.184789 | TGTTTTTACTCCTTGTGAACTCCTT | 58.815 | 36.000 | 0.00 | 0.00 | 0.00 | 3.36 |
731 | 1586 | 4.466827 | TCCTCCCTGTTTGTTTTTACTCC | 58.533 | 43.478 | 0.00 | 0.00 | 0.00 | 3.85 |
732 | 1587 | 5.131067 | ACTCCTCCCTGTTTGTTTTTACTC | 58.869 | 41.667 | 0.00 | 0.00 | 0.00 | 2.59 |
733 | 1588 | 5.125367 | ACTCCTCCCTGTTTGTTTTTACT | 57.875 | 39.130 | 0.00 | 0.00 | 0.00 | 2.24 |
734 | 1589 | 5.358725 | TGAACTCCTCCCTGTTTGTTTTTAC | 59.641 | 40.000 | 0.00 | 0.00 | 0.00 | 2.01 |
769 | 1625 | 4.467107 | GAGAGGGGGCGGGAGAGT | 62.467 | 72.222 | 0.00 | 0.00 | 0.00 | 3.24 |
782 | 1638 | 2.499693 | GACTTTGGAGAAGGGGAGAGAG | 59.500 | 54.545 | 0.00 | 0.00 | 0.00 | 3.20 |
786 | 1642 | 1.362224 | TGGACTTTGGAGAAGGGGAG | 58.638 | 55.000 | 0.00 | 0.00 | 0.00 | 4.30 |
817 | 1973 | 4.494526 | GCGTTTGTTACAAAAGACGGAGAA | 60.495 | 41.667 | 23.51 | 0.00 | 0.00 | 2.87 |
818 | 1974 | 3.001533 | GCGTTTGTTACAAAAGACGGAGA | 59.998 | 43.478 | 23.51 | 0.00 | 0.00 | 3.71 |
819 | 1975 | 3.242478 | TGCGTTTGTTACAAAAGACGGAG | 60.242 | 43.478 | 23.51 | 7.06 | 0.00 | 4.63 |
820 | 1976 | 2.676839 | TGCGTTTGTTACAAAAGACGGA | 59.323 | 40.909 | 23.51 | 16.87 | 0.00 | 4.69 |
842 | 2080 | 1.321743 | GACGAGTGCTACAGATTTGCG | 59.678 | 52.381 | 0.00 | 0.00 | 0.00 | 4.85 |
884 | 2122 | 0.658897 | TGTTTCTGGTTTTCCGACGC | 59.341 | 50.000 | 0.00 | 0.00 | 44.36 | 5.19 |
922 | 2160 | 1.338020 | GTTGCTGGTTTCTTGGAGGTG | 59.662 | 52.381 | 0.00 | 0.00 | 0.00 | 4.00 |
931 | 2169 | 3.057245 | GGAGGAGATTTGTTGCTGGTTTC | 60.057 | 47.826 | 0.00 | 0.00 | 0.00 | 2.78 |
946 | 2184 | 2.044352 | TGGCGATCGTGGAGGAGA | 60.044 | 61.111 | 17.81 | 0.00 | 0.00 | 3.71 |
948 | 2186 | 3.838271 | GCTGGCGATCGTGGAGGA | 61.838 | 66.667 | 17.81 | 0.00 | 0.00 | 3.71 |
1002 | 2244 | 2.824041 | CACAGTGTATGGGCGCCC | 60.824 | 66.667 | 39.40 | 39.40 | 0.00 | 6.13 |
1375 | 2619 | 6.392625 | AGCTAGATCGCATCTACTAAACAA | 57.607 | 37.500 | 0.00 | 0.00 | 40.76 | 2.83 |
1399 | 4060 | 7.444629 | TCGAGTAACTAAGTGTACACTGATT | 57.555 | 36.000 | 28.55 | 22.45 | 41.58 | 2.57 |
1402 | 4063 | 6.128090 | TGGATCGAGTAACTAAGTGTACACTG | 60.128 | 42.308 | 28.55 | 19.01 | 41.58 | 3.66 |
1406 | 4076 | 7.972277 | TGAAATGGATCGAGTAACTAAGTGTAC | 59.028 | 37.037 | 0.00 | 0.00 | 0.00 | 2.90 |
1407 | 4077 | 8.058667 | TGAAATGGATCGAGTAACTAAGTGTA | 57.941 | 34.615 | 0.00 | 0.00 | 0.00 | 2.90 |
1408 | 4078 | 6.931838 | TGAAATGGATCGAGTAACTAAGTGT | 58.068 | 36.000 | 0.00 | 0.00 | 0.00 | 3.55 |
1409 | 4079 | 8.425577 | AATGAAATGGATCGAGTAACTAAGTG | 57.574 | 34.615 | 0.00 | 0.00 | 0.00 | 3.16 |
1410 | 4080 | 7.711339 | GGAATGAAATGGATCGAGTAACTAAGT | 59.289 | 37.037 | 0.00 | 0.00 | 0.00 | 2.24 |
1417 | 4087 | 6.591001 | TCAATGGAATGAAATGGATCGAGTA | 58.409 | 36.000 | 0.00 | 0.00 | 0.00 | 2.59 |
1419 | 4089 | 5.530171 | ACTCAATGGAATGAAATGGATCGAG | 59.470 | 40.000 | 0.00 | 0.00 | 0.00 | 4.04 |
1430 | 4100 | 3.699413 | TGCATGGAACTCAATGGAATGA | 58.301 | 40.909 | 0.00 | 0.00 | 0.00 | 2.57 |
1467 | 4137 | 2.377869 | CCAGGCCCTGAGATTATCCAAT | 59.622 | 50.000 | 13.74 | 0.00 | 32.44 | 3.16 |
1469 | 4139 | 1.061424 | TCCAGGCCCTGAGATTATCCA | 60.061 | 52.381 | 13.74 | 0.00 | 32.44 | 3.41 |
1470 | 4140 | 1.734655 | TCCAGGCCCTGAGATTATCC | 58.265 | 55.000 | 13.74 | 0.00 | 32.44 | 2.59 |
1471 | 4141 | 2.617532 | GCATCCAGGCCCTGAGATTATC | 60.618 | 54.545 | 13.74 | 2.05 | 32.44 | 1.75 |
1472 | 4142 | 1.353694 | GCATCCAGGCCCTGAGATTAT | 59.646 | 52.381 | 13.74 | 0.00 | 32.44 | 1.28 |
1473 | 4143 | 0.767375 | GCATCCAGGCCCTGAGATTA | 59.233 | 55.000 | 13.74 | 0.00 | 32.44 | 1.75 |
1474 | 4144 | 0.992431 | AGCATCCAGGCCCTGAGATT | 60.992 | 55.000 | 13.74 | 0.00 | 32.44 | 2.40 |
1475 | 4145 | 1.385631 | AGCATCCAGGCCCTGAGAT | 60.386 | 57.895 | 13.74 | 10.50 | 32.44 | 2.75 |
1731 | 5377 | 0.690762 | TGTTGGTGTAGGAGAAGCCC | 59.309 | 55.000 | 0.00 | 0.00 | 37.37 | 5.19 |
1770 | 5416 | 1.021202 | CAGTGAGGTTGTCGCCAAAA | 58.979 | 50.000 | 0.00 | 0.00 | 36.18 | 2.44 |
1829 | 5496 | 6.494666 | AATGCCATGAAAGGAATGATGATT | 57.505 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
1830 | 5497 | 7.507956 | TCTTAATGCCATGAAAGGAATGATGAT | 59.492 | 33.333 | 0.00 | 0.00 | 0.00 | 2.45 |
1860 | 5540 | 7.094890 | GCAAGATGAGATCCGATTAATTGTCAT | 60.095 | 37.037 | 6.33 | 6.33 | 0.00 | 3.06 |
1864 | 5544 | 6.798315 | AGCAAGATGAGATCCGATTAATTG | 57.202 | 37.500 | 0.00 | 0.00 | 0.00 | 2.32 |
1873 | 5553 | 4.005650 | TGTCACAAAGCAAGATGAGATCC | 58.994 | 43.478 | 0.00 | 0.00 | 0.00 | 3.36 |
1879 | 5559 | 1.068055 | GGGCTGTCACAAAGCAAGATG | 60.068 | 52.381 | 0.00 | 0.00 | 42.69 | 2.90 |
2058 | 5844 | 1.065126 | CAGGATCCCCTTGAGGTTGAC | 60.065 | 57.143 | 8.55 | 0.00 | 42.02 | 3.18 |
2147 | 6025 | 0.760945 | AGATCCCATCCGAGACCACC | 60.761 | 60.000 | 0.00 | 0.00 | 0.00 | 4.61 |
2159 | 6037 | 2.363276 | ACGGCGGTGTAGATCCCA | 60.363 | 61.111 | 13.24 | 0.00 | 0.00 | 4.37 |
2230 | 6144 | 1.270094 | TGAAGAAGTCGTTCCATGCGT | 60.270 | 47.619 | 0.00 | 0.00 | 32.48 | 5.24 |
2882 | 6829 | 2.038557 | AGTGGGTGCTAATGAACGAACT | 59.961 | 45.455 | 0.00 | 0.00 | 0.00 | 3.01 |
2883 | 6830 | 2.159627 | CAGTGGGTGCTAATGAACGAAC | 59.840 | 50.000 | 0.00 | 0.00 | 0.00 | 3.95 |
2884 | 6831 | 2.422597 | CAGTGGGTGCTAATGAACGAA | 58.577 | 47.619 | 0.00 | 0.00 | 0.00 | 3.85 |
2954 | 6903 | 6.992123 | TCACAAGTTTTGAGCTCTAATCTGAA | 59.008 | 34.615 | 18.20 | 0.00 | 0.00 | 3.02 |
3005 | 6955 | 5.584251 | GGTAATGAGCTCTTTTTGGAGAGAG | 59.416 | 44.000 | 18.84 | 0.00 | 44.78 | 3.20 |
3009 | 6959 | 5.006386 | ACAGGTAATGAGCTCTTTTTGGAG | 58.994 | 41.667 | 18.84 | 9.21 | 36.50 | 3.86 |
3025 | 6975 | 3.117663 | AGTGGGAAAAGCTCAACAGGTAA | 60.118 | 43.478 | 0.00 | 0.00 | 0.00 | 2.85 |
3026 | 6976 | 2.441750 | AGTGGGAAAAGCTCAACAGGTA | 59.558 | 45.455 | 0.00 | 0.00 | 0.00 | 3.08 |
3042 | 6992 | 8.924511 | ATCACATGTCCTATTAATTAAGTGGG | 57.075 | 34.615 | 15.16 | 11.29 | 0.00 | 4.61 |
3064 | 7014 | 4.579869 | GCAAGAACTAACCAAGGAGATCA | 58.420 | 43.478 | 0.00 | 0.00 | 0.00 | 2.92 |
3078 | 7031 | 2.349817 | CGCAAGATCAAACGCAAGAACT | 60.350 | 45.455 | 0.00 | 0.00 | 40.57 | 3.01 |
3079 | 7032 | 1.971962 | CGCAAGATCAAACGCAAGAAC | 59.028 | 47.619 | 0.00 | 0.00 | 40.57 | 3.01 |
3080 | 7033 | 1.601903 | ACGCAAGATCAAACGCAAGAA | 59.398 | 42.857 | 0.00 | 0.00 | 41.24 | 2.52 |
3081 | 7034 | 1.225855 | ACGCAAGATCAAACGCAAGA | 58.774 | 45.000 | 0.00 | 0.00 | 41.24 | 3.02 |
3082 | 7035 | 2.036556 | AACGCAAGATCAAACGCAAG | 57.963 | 45.000 | 0.00 | 0.00 | 43.62 | 4.01 |
3083 | 7036 | 2.483583 | AAACGCAAGATCAAACGCAA | 57.516 | 40.000 | 0.00 | 0.00 | 43.62 | 4.85 |
3087 | 7040 | 5.694674 | TCAAACAAAACGCAAGATCAAAC | 57.305 | 34.783 | 0.00 | 0.00 | 43.62 | 2.93 |
3089 | 7042 | 5.830912 | AGATCAAACAAAACGCAAGATCAA | 58.169 | 33.333 | 0.00 | 0.00 | 43.62 | 2.57 |
3090 | 7043 | 5.437289 | AGATCAAACAAAACGCAAGATCA | 57.563 | 34.783 | 0.00 | 0.00 | 43.62 | 2.92 |
3091 | 7044 | 5.387752 | GCAAGATCAAACAAAACGCAAGATC | 60.388 | 40.000 | 0.00 | 0.00 | 43.62 | 2.75 |
3092 | 7045 | 4.445385 | GCAAGATCAAACAAAACGCAAGAT | 59.555 | 37.500 | 0.00 | 0.00 | 43.62 | 2.40 |
3093 | 7046 | 3.796178 | GCAAGATCAAACAAAACGCAAGA | 59.204 | 39.130 | 0.00 | 0.00 | 43.62 | 3.02 |
3094 | 7047 | 3.360956 | CGCAAGATCAAACAAAACGCAAG | 60.361 | 43.478 | 0.00 | 0.00 | 43.37 | 4.01 |
3095 | 7048 | 2.533535 | CGCAAGATCAAACAAAACGCAA | 59.466 | 40.909 | 0.00 | 0.00 | 43.02 | 4.85 |
3096 | 7049 | 2.115595 | CGCAAGATCAAACAAAACGCA | 58.884 | 42.857 | 0.00 | 0.00 | 43.02 | 5.24 |
3097 | 7050 | 2.116366 | ACGCAAGATCAAACAAAACGC | 58.884 | 42.857 | 0.00 | 0.00 | 43.62 | 4.84 |
3098 | 7051 | 4.264145 | TGAAACGCAAGATCAAACAAAACG | 59.736 | 37.500 | 0.00 | 0.00 | 43.62 | 3.60 |
3099 | 7052 | 5.694674 | TGAAACGCAAGATCAAACAAAAC | 57.305 | 34.783 | 0.00 | 0.00 | 43.62 | 2.43 |
3171 | 7127 | 7.540299 | TCGAAACCTGAAATTGTACAGTTTTT | 58.460 | 30.769 | 16.39 | 7.45 | 31.11 | 1.94 |
3172 | 7128 | 7.090953 | TCGAAACCTGAAATTGTACAGTTTT | 57.909 | 32.000 | 16.39 | 10.87 | 32.98 | 2.43 |
3173 | 7129 | 6.687081 | TCGAAACCTGAAATTGTACAGTTT | 57.313 | 33.333 | 15.40 | 15.40 | 32.93 | 2.66 |
3174 | 7130 | 6.687081 | TTCGAAACCTGAAATTGTACAGTT | 57.313 | 33.333 | 0.00 | 0.00 | 32.93 | 3.16 |
3175 | 7131 | 6.687081 | TTTCGAAACCTGAAATTGTACAGT | 57.313 | 33.333 | 6.47 | 0.00 | 30.75 | 3.55 |
3176 | 7132 | 6.088085 | GCATTTCGAAACCTGAAATTGTACAG | 59.912 | 38.462 | 13.81 | 0.00 | 41.91 | 2.74 |
3177 | 7133 | 5.918011 | GCATTTCGAAACCTGAAATTGTACA | 59.082 | 36.000 | 13.81 | 0.00 | 41.91 | 2.90 |
3189 | 7145 | 5.298276 | TGGATAGTTATGGCATTTCGAAACC | 59.702 | 40.000 | 13.81 | 11.55 | 0.00 | 3.27 |
3195 | 7151 | 5.048782 | TGCGATTGGATAGTTATGGCATTTC | 60.049 | 40.000 | 4.78 | 0.00 | 29.81 | 2.17 |
3201 | 7157 | 6.873605 | TGAAGTATGCGATTGGATAGTTATGG | 59.126 | 38.462 | 13.04 | 0.00 | 40.76 | 2.74 |
3202 | 7158 | 7.889589 | TGAAGTATGCGATTGGATAGTTATG | 57.110 | 36.000 | 13.04 | 0.00 | 40.76 | 1.90 |
3204 | 7160 | 7.225931 | GGTTTGAAGTATGCGATTGGATAGTTA | 59.774 | 37.037 | 13.04 | 0.00 | 40.76 | 2.24 |
3208 | 7164 | 5.680619 | AGGTTTGAAGTATGCGATTGGATA | 58.319 | 37.500 | 0.00 | 0.00 | 0.00 | 2.59 |
3218 | 7174 | 4.201724 | GCGCAACTCTAGGTTTGAAGTATG | 60.202 | 45.833 | 0.30 | 0.00 | 35.74 | 2.39 |
3219 | 7175 | 3.933332 | GCGCAACTCTAGGTTTGAAGTAT | 59.067 | 43.478 | 0.30 | 0.00 | 35.74 | 2.12 |
3220 | 7176 | 3.006537 | AGCGCAACTCTAGGTTTGAAGTA | 59.993 | 43.478 | 11.47 | 0.00 | 35.74 | 2.24 |
3250 | 7206 | 8.462143 | TTTGAAACTACATTTGCACGTAAAAA | 57.538 | 26.923 | 0.00 | 0.00 | 0.00 | 1.94 |
3251 | 7207 | 8.462143 | TTTTGAAACTACATTTGCACGTAAAA | 57.538 | 26.923 | 0.00 | 0.00 | 0.00 | 1.52 |
3252 | 7208 | 7.221067 | CCTTTTGAAACTACATTTGCACGTAAA | 59.779 | 33.333 | 0.00 | 0.00 | 0.00 | 2.01 |
3253 | 7209 | 6.693545 | CCTTTTGAAACTACATTTGCACGTAA | 59.306 | 34.615 | 0.00 | 0.00 | 0.00 | 3.18 |
3254 | 7210 | 6.183360 | ACCTTTTGAAACTACATTTGCACGTA | 60.183 | 34.615 | 0.00 | 0.00 | 0.00 | 3.57 |
3255 | 7211 | 5.040635 | CCTTTTGAAACTACATTTGCACGT | 58.959 | 37.500 | 0.00 | 0.00 | 0.00 | 4.49 |
3256 | 7212 | 5.040635 | ACCTTTTGAAACTACATTTGCACG | 58.959 | 37.500 | 0.00 | 0.00 | 0.00 | 5.34 |
3257 | 7213 | 5.276820 | GCACCTTTTGAAACTACATTTGCAC | 60.277 | 40.000 | 0.00 | 0.00 | 0.00 | 4.57 |
3258 | 7214 | 4.808364 | GCACCTTTTGAAACTACATTTGCA | 59.192 | 37.500 | 0.00 | 0.00 | 0.00 | 4.08 |
3259 | 7215 | 4.808364 | TGCACCTTTTGAAACTACATTTGC | 59.192 | 37.500 | 0.00 | 0.00 | 0.00 | 3.68 |
3260 | 7216 | 5.050837 | GCTGCACCTTTTGAAACTACATTTG | 60.051 | 40.000 | 0.00 | 0.00 | 0.00 | 2.32 |
3261 | 7217 | 5.049828 | GCTGCACCTTTTGAAACTACATTT | 58.950 | 37.500 | 0.00 | 0.00 | 0.00 | 2.32 |
3262 | 7218 | 4.342092 | AGCTGCACCTTTTGAAACTACATT | 59.658 | 37.500 | 1.02 | 0.00 | 0.00 | 2.71 |
3263 | 7219 | 3.891366 | AGCTGCACCTTTTGAAACTACAT | 59.109 | 39.130 | 1.02 | 0.00 | 0.00 | 2.29 |
3264 | 7220 | 3.066621 | CAGCTGCACCTTTTGAAACTACA | 59.933 | 43.478 | 0.00 | 0.00 | 0.00 | 2.74 |
3265 | 7221 | 3.632189 | CAGCTGCACCTTTTGAAACTAC | 58.368 | 45.455 | 0.00 | 0.00 | 0.00 | 2.73 |
3266 | 7222 | 2.034558 | GCAGCTGCACCTTTTGAAACTA | 59.965 | 45.455 | 33.36 | 0.00 | 41.59 | 2.24 |
3267 | 7223 | 1.202452 | GCAGCTGCACCTTTTGAAACT | 60.202 | 47.619 | 33.36 | 0.00 | 41.59 | 2.66 |
3268 | 7224 | 1.211743 | GCAGCTGCACCTTTTGAAAC | 58.788 | 50.000 | 33.36 | 0.00 | 41.59 | 2.78 |
3269 | 7225 | 3.665544 | GCAGCTGCACCTTTTGAAA | 57.334 | 47.368 | 33.36 | 0.00 | 41.59 | 2.69 |
3280 | 7236 | 3.740384 | GCAATTTTGTTGCAGCTGC | 57.260 | 47.368 | 31.89 | 31.89 | 44.34 | 5.25 |
3286 | 7242 | 6.768029 | TTAAGAGATGTGCAATTTTGTTGC | 57.232 | 33.333 | 5.85 | 5.85 | 45.11 | 4.17 |
3287 | 7243 | 7.816031 | AGGATTAAGAGATGTGCAATTTTGTTG | 59.184 | 33.333 | 0.00 | 0.00 | 0.00 | 3.33 |
3288 | 7244 | 7.899973 | AGGATTAAGAGATGTGCAATTTTGTT | 58.100 | 30.769 | 0.00 | 0.00 | 0.00 | 2.83 |
3289 | 7245 | 7.472334 | AGGATTAAGAGATGTGCAATTTTGT | 57.528 | 32.000 | 0.00 | 0.00 | 0.00 | 2.83 |
3290 | 7246 | 9.859427 | TTTAGGATTAAGAGATGTGCAATTTTG | 57.141 | 29.630 | 0.00 | 0.00 | 0.00 | 2.44 |
3292 | 7248 | 9.247861 | ACTTTAGGATTAAGAGATGTGCAATTT | 57.752 | 29.630 | 0.00 | 0.00 | 0.00 | 1.82 |
3293 | 7249 | 8.814038 | ACTTTAGGATTAAGAGATGTGCAATT | 57.186 | 30.769 | 0.00 | 0.00 | 0.00 | 2.32 |
3294 | 7250 | 8.680903 | CAACTTTAGGATTAAGAGATGTGCAAT | 58.319 | 33.333 | 0.00 | 0.00 | 0.00 | 3.56 |
3295 | 7251 | 7.665559 | ACAACTTTAGGATTAAGAGATGTGCAA | 59.334 | 33.333 | 0.00 | 0.00 | 0.00 | 4.08 |
3296 | 7252 | 7.168219 | ACAACTTTAGGATTAAGAGATGTGCA | 58.832 | 34.615 | 0.00 | 0.00 | 0.00 | 4.57 |
3297 | 7253 | 7.617041 | ACAACTTTAGGATTAAGAGATGTGC | 57.383 | 36.000 | 0.00 | 0.00 | 0.00 | 4.57 |
3327 | 7283 | 8.495949 | GCATTTTGTAGTTGCGTATATACTCAT | 58.504 | 33.333 | 11.05 | 0.00 | 0.00 | 2.90 |
3338 | 7301 | 9.877137 | TTATCATTATAGCATTTTGTAGTTGCG | 57.123 | 29.630 | 0.00 | 0.00 | 41.22 | 4.85 |
3401 | 7424 | 7.330208 | GTGTTAATGGACTAGCGAAAAGAAGTA | 59.670 | 37.037 | 0.00 | 0.00 | 0.00 | 2.24 |
3437 | 7473 | 1.388547 | TGAAAACTTTGCGCTCACCT | 58.611 | 45.000 | 9.73 | 0.00 | 0.00 | 4.00 |
3463 | 7499 | 7.726291 | AGAGTAAGTTCTAGCTATGCTTATGGA | 59.274 | 37.037 | 12.07 | 0.00 | 40.44 | 3.41 |
3465 | 7501 | 8.572185 | TGAGAGTAAGTTCTAGCTATGCTTATG | 58.428 | 37.037 | 12.07 | 0.00 | 40.44 | 1.90 |
3472 | 7508 | 7.255312 | CGTGGAATGAGAGTAAGTTCTAGCTAT | 60.255 | 40.741 | 0.00 | 0.00 | 0.00 | 2.97 |
3480 | 7516 | 3.678056 | TGCGTGGAATGAGAGTAAGTT | 57.322 | 42.857 | 0.00 | 0.00 | 0.00 | 2.66 |
3495 | 7531 | 4.530094 | TTTAAGTGACAACTCTTGCGTG | 57.470 | 40.909 | 0.00 | 0.00 | 34.77 | 5.34 |
3565 | 7602 | 4.689062 | AGATCAGAGGGAGTACTTGGAAA | 58.311 | 43.478 | 0.00 | 0.00 | 0.00 | 3.13 |
3581 | 7618 | 8.333908 | GTTTGAGCAACAAGTGATATAGATCAG | 58.666 | 37.037 | 0.00 | 0.00 | 37.77 | 2.90 |
3582 | 7619 | 7.010460 | CGTTTGAGCAACAAGTGATATAGATCA | 59.990 | 37.037 | 0.00 | 0.00 | 38.50 | 2.92 |
3587 | 7624 | 5.929415 | TGTCGTTTGAGCAACAAGTGATATA | 59.071 | 36.000 | 0.00 | 0.00 | 39.77 | 0.86 |
3592 | 7629 | 2.823196 | TGTCGTTTGAGCAACAAGTG | 57.177 | 45.000 | 0.00 | 0.00 | 39.77 | 3.16 |
3597 | 7634 | 7.295201 | TCAATATTACTTGTCGTTTGAGCAAC | 58.705 | 34.615 | 0.00 | 0.00 | 0.00 | 4.17 |
3697 | 7734 | 4.207165 | GAGTTCTCTCTGCTAGTGGAGAT | 58.793 | 47.826 | 14.11 | 3.61 | 39.88 | 2.75 |
3701 | 7738 | 2.165437 | GTGGAGTTCTCTCTGCTAGTGG | 59.835 | 54.545 | 0.00 | 0.00 | 40.29 | 4.00 |
3707 | 7744 | 1.337635 | CCTGTGTGGAGTTCTCTCTGC | 60.338 | 57.143 | 0.00 | 0.00 | 40.29 | 4.26 |
3709 | 7746 | 2.685106 | TCCTGTGTGGAGTTCTCTCT | 57.315 | 50.000 | 0.00 | 0.00 | 40.56 | 3.10 |
3764 | 9710 | 7.012044 | AGCGTGTTAATCCATATAAAAGTCACC | 59.988 | 37.037 | 0.00 | 0.00 | 0.00 | 4.02 |
3765 | 9711 | 7.916552 | AGCGTGTTAATCCATATAAAAGTCAC | 58.083 | 34.615 | 0.00 | 0.00 | 0.00 | 3.67 |
3769 | 9715 | 7.490962 | TGGAGCGTGTTAATCCATATAAAAG | 57.509 | 36.000 | 0.00 | 0.00 | 38.19 | 2.27 |
3783 | 9729 | 3.074412 | CTCTTTGGTAATGGAGCGTGTT | 58.926 | 45.455 | 0.00 | 0.00 | 0.00 | 3.32 |
3784 | 9730 | 2.301870 | TCTCTTTGGTAATGGAGCGTGT | 59.698 | 45.455 | 0.00 | 0.00 | 0.00 | 4.49 |
3786 | 9732 | 3.695830 | TTCTCTTTGGTAATGGAGCGT | 57.304 | 42.857 | 0.00 | 0.00 | 0.00 | 5.07 |
3854 | 9800 | 3.202001 | CCCGCCCTGTGCAATACG | 61.202 | 66.667 | 0.00 | 0.00 | 41.33 | 3.06 |
3858 | 9804 | 4.531426 | AAACCCCGCCCTGTGCAA | 62.531 | 61.111 | 0.00 | 0.00 | 41.33 | 4.08 |
3859 | 9805 | 2.642183 | TAAAAACCCCGCCCTGTGCA | 62.642 | 55.000 | 0.00 | 0.00 | 41.33 | 4.57 |
3860 | 9806 | 1.465200 | TTAAAAACCCCGCCCTGTGC | 61.465 | 55.000 | 0.00 | 0.00 | 0.00 | 4.57 |
3861 | 9807 | 2.734893 | TTAAAAACCCCGCCCTGTG | 58.265 | 52.632 | 0.00 | 0.00 | 0.00 | 3.66 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.