Multiple sequence alignment - TraesCS7A01G507500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G507500 chr7A 100.000 3830 0 0 1 3830 694358873 694355044 0.000000e+00 7073
1 TraesCS7A01G507500 chr7A 83.500 2200 266 43 704 2839 694254333 694252167 0.000000e+00 1962
2 TraesCS7A01G507500 chr7A 82.546 2160 342 23 675 2818 694331915 694329775 0.000000e+00 1868
3 TraesCS7A01G507500 chr7A 82.191 2173 338 29 638 2788 694375926 694373781 0.000000e+00 1823
4 TraesCS7A01G507500 chr7A 77.792 797 142 24 714 1488 694116539 694117322 3.490000e-125 459
5 TraesCS7A01G507500 chr7A 82.227 422 54 12 656 1057 694135968 694136388 1.020000e-90 344
6 TraesCS7A01G507500 chr7D 92.813 2741 156 22 371 3088 602723874 602721152 0.000000e+00 3932
7 TraesCS7A01G507500 chr7D 84.685 2220 317 11 621 2824 602751559 602749347 0.000000e+00 2194
8 TraesCS7A01G507500 chr7D 84.462 2156 288 21 713 2836 602664420 602662280 0.000000e+00 2082
9 TraesCS7A01G507500 chr7D 85.139 1588 219 11 1099 2676 602626909 602628489 0.000000e+00 1609
10 TraesCS7A01G507500 chr7D 83.476 1640 255 13 732 2362 602673509 602671877 0.000000e+00 1513
11 TraesCS7A01G507500 chr7D 92.208 308 20 3 3525 3829 602687537 602687231 2.110000e-117 433
12 TraesCS7A01G507500 chr7D 85.345 348 46 4 713 1056 602626493 602626839 4.710000e-94 355
13 TraesCS7A01G507500 chr7D 83.729 295 25 7 3195 3474 602719538 602719252 1.370000e-64 257
14 TraesCS7A01G507500 chr7B 94.370 2469 132 3 371 2836 683231793 683229329 0.000000e+00 3783
15 TraesCS7A01G507500 chr7B 84.014 2496 329 36 384 2824 682841852 682844332 0.000000e+00 2335
16 TraesCS7A01G507500 chr7B 83.987 2217 311 24 656 2836 683105713 683107921 0.000000e+00 2087
17 TraesCS7A01G507500 chr7B 83.773 2200 334 16 638 2824 683243834 683241645 0.000000e+00 2063
18 TraesCS7A01G507500 chr7B 85.526 1292 153 20 1560 2836 683418931 683417659 0.000000e+00 1319
19 TraesCS7A01G507500 chr7B 89.180 573 44 10 3250 3811 683228920 683228355 0.000000e+00 699
20 TraesCS7A01G507500 chr7B 87.500 376 40 3 3348 3721 425264858 425265228 9.830000e-116 427
21 TraesCS7A01G507500 chr7B 83.429 350 27 15 2833 3167 683229298 683228965 2.890000e-76 296
22 TraesCS7A01G507500 chr7B 86.792 106 12 2 3725 3829 425265432 425265536 2.420000e-22 117
23 TraesCS7A01G507500 chr7B 86.916 107 11 3 3725 3829 507884478 507884373 2.420000e-22 117
24 TraesCS7A01G507500 chr5A 82.836 536 66 12 3206 3721 283307522 283308051 1.250000e-124 457
25 TraesCS7A01G507500 chr5B 82.836 536 64 14 3206 3721 230881512 230882039 4.510000e-124 455
26 TraesCS7A01G507500 chr5D 87.402 381 45 3 3343 3721 215300856 215301235 5.880000e-118 435
27 TraesCS7A01G507500 chr2A 86.968 376 42 3 3348 3721 394707689 394707319 2.130000e-112 416
28 TraesCS7A01G507500 chr2A 86.807 379 43 3 3345 3721 406497283 406497656 2.130000e-112 416
29 TraesCS7A01G507500 chr2A 87.963 108 11 2 3720 3826 406497855 406497961 4.020000e-25 126
30 TraesCS7A01G507500 chr6B 85.920 348 42 3 3375 3720 47972217 47971875 7.820000e-97 364


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G507500 chr7A 694355044 694358873 3829 True 7073.000000 7073 100.000 1 3830 1 chr7A.!!$R3 3829
1 TraesCS7A01G507500 chr7A 694252167 694254333 2166 True 1962.000000 1962 83.500 704 2839 1 chr7A.!!$R1 2135
2 TraesCS7A01G507500 chr7A 694329775 694331915 2140 True 1868.000000 1868 82.546 675 2818 1 chr7A.!!$R2 2143
3 TraesCS7A01G507500 chr7A 694373781 694375926 2145 True 1823.000000 1823 82.191 638 2788 1 chr7A.!!$R4 2150
4 TraesCS7A01G507500 chr7A 694116539 694117322 783 False 459.000000 459 77.792 714 1488 1 chr7A.!!$F1 774
5 TraesCS7A01G507500 chr7D 602749347 602751559 2212 True 2194.000000 2194 84.685 621 2824 1 chr7D.!!$R4 2203
6 TraesCS7A01G507500 chr7D 602719252 602723874 4622 True 2094.500000 3932 88.271 371 3474 2 chr7D.!!$R5 3103
7 TraesCS7A01G507500 chr7D 602662280 602664420 2140 True 2082.000000 2082 84.462 713 2836 1 chr7D.!!$R1 2123
8 TraesCS7A01G507500 chr7D 602671877 602673509 1632 True 1513.000000 1513 83.476 732 2362 1 chr7D.!!$R2 1630
9 TraesCS7A01G507500 chr7D 602626493 602628489 1996 False 982.000000 1609 85.242 713 2676 2 chr7D.!!$F1 1963
10 TraesCS7A01G507500 chr7B 682841852 682844332 2480 False 2335.000000 2335 84.014 384 2824 1 chr7B.!!$F1 2440
11 TraesCS7A01G507500 chr7B 683105713 683107921 2208 False 2087.000000 2087 83.987 656 2836 1 chr7B.!!$F2 2180
12 TraesCS7A01G507500 chr7B 683241645 683243834 2189 True 2063.000000 2063 83.773 638 2824 1 chr7B.!!$R2 2186
13 TraesCS7A01G507500 chr7B 683228355 683231793 3438 True 1592.666667 3783 88.993 371 3811 3 chr7B.!!$R4 3440
14 TraesCS7A01G507500 chr7B 683417659 683418931 1272 True 1319.000000 1319 85.526 1560 2836 1 chr7B.!!$R3 1276
15 TraesCS7A01G507500 chr7B 425264858 425265536 678 False 272.000000 427 87.146 3348 3829 2 chr7B.!!$F3 481
16 TraesCS7A01G507500 chr5A 283307522 283308051 529 False 457.000000 457 82.836 3206 3721 1 chr5A.!!$F1 515
17 TraesCS7A01G507500 chr5B 230881512 230882039 527 False 455.000000 455 82.836 3206 3721 1 chr5B.!!$F1 515
18 TraesCS7A01G507500 chr2A 406497283 406497961 678 False 271.000000 416 87.385 3345 3826 2 chr2A.!!$F1 481

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
284 285 0.110486 ACTGTTAGGTGTGGCTTGGG 59.890 55.0 0.0 0.0 0.0 4.12 F
286 287 0.179004 TGTTAGGTGTGGCTTGGGTG 60.179 55.0 0.0 0.0 0.0 4.61 F
301 302 0.243636 GGGTGCAATGGGAACGAAAG 59.756 55.0 0.0 0.0 0.0 2.62 F
302 303 0.243636 GGTGCAATGGGAACGAAAGG 59.756 55.0 0.0 0.0 0.0 3.11 F
362 363 0.250467 TTTCTGCCTGTGAGCCTGTC 60.250 55.0 0.0 0.0 0.0 3.51 F
1287 1418 0.323629 TCACGTCCCCCAATGTTCTC 59.676 55.0 0.0 0.0 0.0 2.87 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1335 1466 0.312416 CACCGTCGATGAGGAGATCC 59.688 60.000 6.11 0.0 0.00 3.36 R
1440 1578 1.005748 CTGGTGCAGCTCGAAGACA 60.006 57.895 18.08 0.0 0.00 3.41 R
1893 2094 1.158484 CCGACGACTCCGCTGATAGA 61.158 60.000 0.00 0.0 39.95 1.98 R
1941 2143 2.749600 AGTCTGCTGATGATCCTCACT 58.250 47.619 0.00 0.0 0.00 3.41 R
2351 2553 1.511464 CTGTACACGTCGGACTCGC 60.511 63.158 6.57 0.0 36.13 5.03 R
3197 5013 0.470766 TTACAACCAAGTCGCAGGGT 59.529 50.000 0.00 0.0 36.19 4.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.605410 CTATCTTATCCTCTCTCGTTAGTCC 57.395 44.000 0.00 0.00 0.00 3.85
25 26 5.369409 TCTTATCCTCTCTCGTTAGTCCA 57.631 43.478 0.00 0.00 0.00 4.02
26 27 5.124645 TCTTATCCTCTCTCGTTAGTCCAC 58.875 45.833 0.00 0.00 0.00 4.02
27 28 2.125773 TCCTCTCTCGTTAGTCCACC 57.874 55.000 0.00 0.00 0.00 4.61
28 29 1.634459 TCCTCTCTCGTTAGTCCACCT 59.366 52.381 0.00 0.00 0.00 4.00
29 30 2.842496 TCCTCTCTCGTTAGTCCACCTA 59.158 50.000 0.00 0.00 0.00 3.08
30 31 3.118334 TCCTCTCTCGTTAGTCCACCTAG 60.118 52.174 0.00 0.00 0.00 3.02
31 32 2.614983 CTCTCTCGTTAGTCCACCTAGC 59.385 54.545 0.00 0.00 0.00 3.42
32 33 2.026542 TCTCTCGTTAGTCCACCTAGCA 60.027 50.000 0.00 0.00 0.00 3.49
33 34 2.753452 CTCTCGTTAGTCCACCTAGCAA 59.247 50.000 0.00 0.00 0.00 3.91
34 35 2.753452 TCTCGTTAGTCCACCTAGCAAG 59.247 50.000 0.00 0.00 0.00 4.01
35 36 2.753452 CTCGTTAGTCCACCTAGCAAGA 59.247 50.000 0.00 0.00 0.00 3.02
36 37 3.362706 TCGTTAGTCCACCTAGCAAGAT 58.637 45.455 0.00 0.00 0.00 2.40
37 38 4.529897 TCGTTAGTCCACCTAGCAAGATA 58.470 43.478 0.00 0.00 0.00 1.98
38 39 4.951715 TCGTTAGTCCACCTAGCAAGATAA 59.048 41.667 0.00 0.00 0.00 1.75
39 40 5.041940 CGTTAGTCCACCTAGCAAGATAAC 58.958 45.833 0.00 0.00 0.00 1.89
40 41 5.358090 GTTAGTCCACCTAGCAAGATAACC 58.642 45.833 0.00 0.00 0.00 2.85
41 42 3.725634 AGTCCACCTAGCAAGATAACCT 58.274 45.455 0.00 0.00 0.00 3.50
42 43 4.880164 AGTCCACCTAGCAAGATAACCTA 58.120 43.478 0.00 0.00 0.00 3.08
43 44 5.468658 AGTCCACCTAGCAAGATAACCTAT 58.531 41.667 0.00 0.00 0.00 2.57
44 45 5.540719 AGTCCACCTAGCAAGATAACCTATC 59.459 44.000 0.00 0.00 35.41 2.08
45 46 4.838986 TCCACCTAGCAAGATAACCTATCC 59.161 45.833 0.00 0.00 35.79 2.59
46 47 4.841246 CCACCTAGCAAGATAACCTATCCT 59.159 45.833 0.00 0.00 35.79 3.24
47 48 6.017192 CCACCTAGCAAGATAACCTATCCTA 58.983 44.000 0.00 0.00 35.79 2.94
48 49 6.670027 CCACCTAGCAAGATAACCTATCCTAT 59.330 42.308 0.00 0.00 35.79 2.57
49 50 7.364232 CCACCTAGCAAGATAACCTATCCTATG 60.364 44.444 0.00 0.00 35.79 2.23
50 51 7.179338 CACCTAGCAAGATAACCTATCCTATGT 59.821 40.741 0.00 0.00 35.79 2.29
51 52 8.399529 ACCTAGCAAGATAACCTATCCTATGTA 58.600 37.037 0.00 0.00 35.79 2.29
52 53 8.688151 CCTAGCAAGATAACCTATCCTATGTAC 58.312 40.741 0.00 0.00 35.79 2.90
53 54 9.469097 CTAGCAAGATAACCTATCCTATGTACT 57.531 37.037 0.00 0.00 35.79 2.73
54 55 8.128322 AGCAAGATAACCTATCCTATGTACTG 57.872 38.462 0.00 0.00 35.79 2.74
55 56 7.730784 AGCAAGATAACCTATCCTATGTACTGT 59.269 37.037 0.00 0.00 35.79 3.55
56 57 8.368668 GCAAGATAACCTATCCTATGTACTGTT 58.631 37.037 0.00 0.00 35.79 3.16
59 60 8.871125 AGATAACCTATCCTATGTACTGTTTGG 58.129 37.037 0.00 0.00 35.79 3.28
60 61 6.886178 AACCTATCCTATGTACTGTTTGGT 57.114 37.500 0.00 0.00 0.00 3.67
61 62 7.983166 AACCTATCCTATGTACTGTTTGGTA 57.017 36.000 0.00 0.00 0.00 3.25
62 63 8.562949 AACCTATCCTATGTACTGTTTGGTAT 57.437 34.615 0.00 0.00 0.00 2.73
63 64 7.963532 ACCTATCCTATGTACTGTTTGGTATG 58.036 38.462 0.00 0.00 0.00 2.39
64 65 7.787904 ACCTATCCTATGTACTGTTTGGTATGA 59.212 37.037 0.00 0.00 0.00 2.15
65 66 8.816894 CCTATCCTATGTACTGTTTGGTATGAT 58.183 37.037 0.00 0.00 0.00 2.45
66 67 9.645059 CTATCCTATGTACTGTTTGGTATGATG 57.355 37.037 0.00 0.00 0.00 3.07
67 68 6.288294 TCCTATGTACTGTTTGGTATGATGC 58.712 40.000 0.00 0.00 0.00 3.91
68 69 6.099701 TCCTATGTACTGTTTGGTATGATGCT 59.900 38.462 0.00 0.00 0.00 3.79
69 70 7.289084 TCCTATGTACTGTTTGGTATGATGCTA 59.711 37.037 0.00 0.00 0.00 3.49
70 71 8.097038 CCTATGTACTGTTTGGTATGATGCTAT 58.903 37.037 0.00 0.00 0.00 2.97
71 72 7.734924 ATGTACTGTTTGGTATGATGCTATG 57.265 36.000 0.00 0.00 0.00 2.23
72 73 5.527214 TGTACTGTTTGGTATGATGCTATGC 59.473 40.000 0.00 0.00 0.00 3.14
73 74 3.885297 ACTGTTTGGTATGATGCTATGCC 59.115 43.478 0.00 0.00 33.89 4.40
74 75 3.884693 CTGTTTGGTATGATGCTATGCCA 59.115 43.478 0.00 0.00 40.43 4.92
75 76 4.276642 TGTTTGGTATGATGCTATGCCAA 58.723 39.130 12.16 12.16 46.57 4.52
79 80 6.482898 TTGGTATGATGCTATGCCAAAATT 57.517 33.333 13.24 0.00 45.70 1.82
80 81 6.482898 TGGTATGATGCTATGCCAAAATTT 57.517 33.333 4.17 0.00 39.44 1.82
81 82 7.594351 TGGTATGATGCTATGCCAAAATTTA 57.406 32.000 0.00 0.00 39.44 1.40
82 83 8.192743 TGGTATGATGCTATGCCAAAATTTAT 57.807 30.769 0.00 0.00 39.44 1.40
83 84 8.306038 TGGTATGATGCTATGCCAAAATTTATC 58.694 33.333 0.00 0.00 39.44 1.75
84 85 8.526147 GGTATGATGCTATGCCAAAATTTATCT 58.474 33.333 0.00 0.00 33.54 1.98
85 86 9.565213 GTATGATGCTATGCCAAAATTTATCTC 57.435 33.333 0.00 0.00 0.00 2.75
86 87 6.671190 TGATGCTATGCCAAAATTTATCTCG 58.329 36.000 0.00 0.00 0.00 4.04
87 88 6.262944 TGATGCTATGCCAAAATTTATCTCGT 59.737 34.615 0.00 0.00 0.00 4.18
88 89 6.060028 TGCTATGCCAAAATTTATCTCGTC 57.940 37.500 0.00 0.00 0.00 4.20
89 90 5.140177 GCTATGCCAAAATTTATCTCGTCG 58.860 41.667 0.00 0.00 0.00 5.12
90 91 5.050363 GCTATGCCAAAATTTATCTCGTCGA 60.050 40.000 0.00 0.00 0.00 4.20
91 92 4.593597 TGCCAAAATTTATCTCGTCGAC 57.406 40.909 5.18 5.18 0.00 4.20
92 93 3.997681 TGCCAAAATTTATCTCGTCGACA 59.002 39.130 17.16 1.87 0.00 4.35
93 94 4.452795 TGCCAAAATTTATCTCGTCGACAA 59.547 37.500 17.16 0.86 0.00 3.18
94 95 5.123186 TGCCAAAATTTATCTCGTCGACAAT 59.877 36.000 17.16 8.24 0.00 2.71
95 96 6.027749 GCCAAAATTTATCTCGTCGACAATT 58.972 36.000 17.16 9.67 0.00 2.32
96 97 6.021468 GCCAAAATTTATCTCGTCGACAATTG 60.021 38.462 17.16 3.24 0.00 2.32
97 98 7.021196 CCAAAATTTATCTCGTCGACAATTGT 58.979 34.615 17.16 11.78 0.00 2.71
98 99 8.172484 CCAAAATTTATCTCGTCGACAATTGTA 58.828 33.333 17.16 0.00 0.00 2.41
99 100 9.536558 CAAAATTTATCTCGTCGACAATTGTAA 57.463 29.630 17.16 0.00 0.00 2.41
102 103 9.702726 AATTTATCTCGTCGACAATTGTAAATG 57.297 29.630 17.16 8.19 0.00 2.32
103 104 8.468720 TTTATCTCGTCGACAATTGTAAATGA 57.531 30.769 17.16 11.92 0.00 2.57
104 105 8.642908 TTATCTCGTCGACAATTGTAAATGAT 57.357 30.769 17.16 12.33 0.00 2.45
105 106 6.961359 TCTCGTCGACAATTGTAAATGATT 57.039 33.333 17.16 0.00 0.00 2.57
106 107 7.359262 TCTCGTCGACAATTGTAAATGATTT 57.641 32.000 17.16 0.00 0.00 2.17
107 108 8.468720 TCTCGTCGACAATTGTAAATGATTTA 57.531 30.769 17.16 0.00 0.00 1.40
108 109 8.377681 TCTCGTCGACAATTGTAAATGATTTAC 58.622 33.333 18.56 18.56 44.43 2.01
109 110 7.457868 TCGTCGACAATTGTAAATGATTTACC 58.542 34.615 21.49 7.41 43.73 2.85
110 111 7.332430 TCGTCGACAATTGTAAATGATTTACCT 59.668 33.333 21.49 9.30 43.73 3.08
111 112 7.960738 CGTCGACAATTGTAAATGATTTACCTT 59.039 33.333 21.49 13.77 43.73 3.50
112 113 9.620660 GTCGACAATTGTAAATGATTTACCTTT 57.379 29.630 21.49 13.61 43.73 3.11
113 114 9.834628 TCGACAATTGTAAATGATTTACCTTTC 57.165 29.630 21.49 11.63 43.73 2.62
114 115 8.785101 CGACAATTGTAAATGATTTACCTTTCG 58.215 33.333 21.49 17.35 43.73 3.46
115 116 9.620660 GACAATTGTAAATGATTTACCTTTCGT 57.379 29.630 21.49 13.54 43.73 3.85
116 117 9.974980 ACAATTGTAAATGATTTACCTTTCGTT 57.025 25.926 21.49 7.76 43.73 3.85
120 121 9.453325 TTGTAAATGATTTACCTTTCGTTTGAC 57.547 29.630 21.49 0.00 43.73 3.18
121 122 7.799447 TGTAAATGATTTACCTTTCGTTTGACG 59.201 33.333 21.49 0.00 43.73 4.35
122 123 8.011106 GTAAATGATTTACCTTTCGTTTGACGA 58.989 33.333 15.40 0.00 42.83 4.20
137 138 7.659290 CGTTTGACGAATAAATGATTTACCC 57.341 36.000 0.00 0.00 46.05 3.69
138 139 6.689669 CGTTTGACGAATAAATGATTTACCCC 59.310 38.462 0.00 0.00 46.05 4.95
139 140 7.414762 CGTTTGACGAATAAATGATTTACCCCT 60.415 37.037 0.00 0.00 46.05 4.79
140 141 7.562454 TTGACGAATAAATGATTTACCCCTC 57.438 36.000 0.00 0.00 0.00 4.30
141 142 6.654959 TGACGAATAAATGATTTACCCCTCA 58.345 36.000 0.00 0.00 0.00 3.86
142 143 7.113437 TGACGAATAAATGATTTACCCCTCAA 58.887 34.615 0.00 0.00 0.00 3.02
143 144 7.282224 TGACGAATAAATGATTTACCCCTCAAG 59.718 37.037 0.00 0.00 0.00 3.02
144 145 7.343357 ACGAATAAATGATTTACCCCTCAAGA 58.657 34.615 0.00 0.00 0.00 3.02
145 146 7.832187 ACGAATAAATGATTTACCCCTCAAGAA 59.168 33.333 0.00 0.00 0.00 2.52
146 147 8.682710 CGAATAAATGATTTACCCCTCAAGAAA 58.317 33.333 0.00 0.00 0.00 2.52
206 207 9.687717 GAAATGTTTTGGTATATTTTTCATGCG 57.312 29.630 0.00 0.00 0.00 4.73
207 208 8.770438 AATGTTTTGGTATATTTTTCATGCGT 57.230 26.923 0.00 0.00 0.00 5.24
208 209 7.573916 TGTTTTGGTATATTTTTCATGCGTG 57.426 32.000 0.00 0.00 0.00 5.34
209 210 6.587990 TGTTTTGGTATATTTTTCATGCGTGG 59.412 34.615 5.98 0.00 0.00 4.94
210 211 4.909696 TGGTATATTTTTCATGCGTGGG 57.090 40.909 5.98 0.00 0.00 4.61
211 212 4.274147 TGGTATATTTTTCATGCGTGGGT 58.726 39.130 5.98 0.00 0.00 4.51
212 213 4.097135 TGGTATATTTTTCATGCGTGGGTG 59.903 41.667 5.98 0.00 0.00 4.61
213 214 2.645730 TATTTTTCATGCGTGGGTGC 57.354 45.000 5.98 0.00 0.00 5.01
220 221 3.545574 TGCGTGGGTGCACTGAGA 61.546 61.111 17.98 0.00 40.62 3.27
221 222 2.046892 GCGTGGGTGCACTGAGAT 60.047 61.111 17.98 0.00 34.15 2.75
222 223 2.393768 GCGTGGGTGCACTGAGATG 61.394 63.158 17.98 4.95 34.15 2.90
223 224 1.742880 CGTGGGTGCACTGAGATGG 60.743 63.158 17.98 0.00 0.00 3.51
224 225 1.377725 GTGGGTGCACTGAGATGGG 60.378 63.158 17.98 0.00 0.00 4.00
225 226 1.538629 TGGGTGCACTGAGATGGGA 60.539 57.895 17.98 0.00 0.00 4.37
226 227 0.915872 TGGGTGCACTGAGATGGGAT 60.916 55.000 17.98 0.00 0.00 3.85
227 228 0.257039 GGGTGCACTGAGATGGGATT 59.743 55.000 17.98 0.00 0.00 3.01
228 229 1.673168 GGTGCACTGAGATGGGATTC 58.327 55.000 17.98 0.00 0.00 2.52
229 230 1.065199 GGTGCACTGAGATGGGATTCA 60.065 52.381 17.98 0.00 0.00 2.57
230 231 2.618816 GGTGCACTGAGATGGGATTCAA 60.619 50.000 17.98 0.00 0.00 2.69
231 232 2.421424 GTGCACTGAGATGGGATTCAAC 59.579 50.000 10.32 0.00 0.00 3.18
232 233 2.019984 GCACTGAGATGGGATTCAACC 58.980 52.381 0.00 0.00 0.00 3.77
233 234 2.618816 GCACTGAGATGGGATTCAACCA 60.619 50.000 0.00 0.00 43.22 3.67
244 245 5.886609 TGGGATTCAACCATTACTTTCTCA 58.113 37.500 0.00 0.00 31.83 3.27
245 246 6.310941 TGGGATTCAACCATTACTTTCTCAA 58.689 36.000 0.00 0.00 31.83 3.02
246 247 6.780031 TGGGATTCAACCATTACTTTCTCAAA 59.220 34.615 0.00 0.00 31.83 2.69
247 248 7.090808 GGGATTCAACCATTACTTTCTCAAAC 58.909 38.462 0.00 0.00 0.00 2.93
248 249 7.039714 GGGATTCAACCATTACTTTCTCAAACT 60.040 37.037 0.00 0.00 0.00 2.66
249 250 7.809806 GGATTCAACCATTACTTTCTCAAACTG 59.190 37.037 0.00 0.00 0.00 3.16
250 251 7.873719 TTCAACCATTACTTTCTCAAACTGA 57.126 32.000 0.00 0.00 0.00 3.41
251 252 7.259290 TCAACCATTACTTTCTCAAACTGAC 57.741 36.000 0.00 0.00 0.00 3.51
252 253 6.826231 TCAACCATTACTTTCTCAAACTGACA 59.174 34.615 0.00 0.00 0.00 3.58
253 254 6.867662 ACCATTACTTTCTCAAACTGACAG 57.132 37.500 0.00 0.00 0.00 3.51
254 255 6.357367 ACCATTACTTTCTCAAACTGACAGT 58.643 36.000 1.07 1.07 0.00 3.55
255 256 6.260936 ACCATTACTTTCTCAAACTGACAGTG 59.739 38.462 9.33 0.00 0.00 3.66
256 257 6.293626 CCATTACTTTCTCAAACTGACAGTGG 60.294 42.308 9.33 5.02 0.00 4.00
257 258 4.222124 ACTTTCTCAAACTGACAGTGGT 57.778 40.909 9.33 0.00 0.00 4.16
258 259 4.589908 ACTTTCTCAAACTGACAGTGGTT 58.410 39.130 9.33 0.00 0.00 3.67
259 260 5.010282 ACTTTCTCAAACTGACAGTGGTTT 58.990 37.500 9.33 0.00 36.27 3.27
260 261 5.476945 ACTTTCTCAAACTGACAGTGGTTTT 59.523 36.000 9.33 0.00 34.01 2.43
261 262 5.975693 TTCTCAAACTGACAGTGGTTTTT 57.024 34.783 9.33 0.00 34.01 1.94
262 263 5.309323 TCTCAAACTGACAGTGGTTTTTG 57.691 39.130 9.33 9.55 34.01 2.44
263 264 5.007034 TCTCAAACTGACAGTGGTTTTTGA 58.993 37.500 9.33 13.23 34.01 2.69
264 265 5.475220 TCTCAAACTGACAGTGGTTTTTGAA 59.525 36.000 9.33 3.94 33.70 2.69
265 266 6.015856 TCTCAAACTGACAGTGGTTTTTGAAA 60.016 34.615 9.33 0.00 33.70 2.69
266 267 5.923684 TCAAACTGACAGTGGTTTTTGAAAC 59.076 36.000 9.33 0.00 34.01 2.78
267 268 5.722021 AACTGACAGTGGTTTTTGAAACT 57.278 34.783 9.33 0.00 0.00 2.66
268 269 5.059404 ACTGACAGTGGTTTTTGAAACTG 57.941 39.130 7.47 0.00 44.46 3.16
274 275 5.961272 CAGTGGTTTTTGAAACTGTTAGGT 58.039 37.500 0.00 0.00 36.20 3.08
275 276 5.804979 CAGTGGTTTTTGAAACTGTTAGGTG 59.195 40.000 0.00 0.00 36.20 4.00
276 277 5.479027 AGTGGTTTTTGAAACTGTTAGGTGT 59.521 36.000 0.00 0.00 0.00 4.16
277 278 5.575218 GTGGTTTTTGAAACTGTTAGGTGTG 59.425 40.000 0.00 0.00 0.00 3.82
278 279 5.106442 GGTTTTTGAAACTGTTAGGTGTGG 58.894 41.667 0.00 0.00 0.00 4.17
279 280 4.379339 TTTTGAAACTGTTAGGTGTGGC 57.621 40.909 0.00 0.00 0.00 5.01
280 281 3.290948 TTGAAACTGTTAGGTGTGGCT 57.709 42.857 0.00 0.00 0.00 4.75
281 282 3.290948 TGAAACTGTTAGGTGTGGCTT 57.709 42.857 0.00 0.00 0.00 4.35
282 283 2.948979 TGAAACTGTTAGGTGTGGCTTG 59.051 45.455 0.00 0.00 0.00 4.01
283 284 1.981256 AACTGTTAGGTGTGGCTTGG 58.019 50.000 0.00 0.00 0.00 3.61
284 285 0.110486 ACTGTTAGGTGTGGCTTGGG 59.890 55.000 0.00 0.00 0.00 4.12
285 286 0.110486 CTGTTAGGTGTGGCTTGGGT 59.890 55.000 0.00 0.00 0.00 4.51
286 287 0.179004 TGTTAGGTGTGGCTTGGGTG 60.179 55.000 0.00 0.00 0.00 4.61
287 288 1.228429 TTAGGTGTGGCTTGGGTGC 60.228 57.895 0.00 0.00 0.00 5.01
288 289 2.000825 TTAGGTGTGGCTTGGGTGCA 62.001 55.000 0.00 0.00 34.04 4.57
289 290 2.000825 TAGGTGTGGCTTGGGTGCAA 62.001 55.000 0.00 0.00 34.04 4.08
290 291 2.209315 GGTGTGGCTTGGGTGCAAT 61.209 57.895 0.00 0.00 34.04 3.56
291 292 1.005867 GTGTGGCTTGGGTGCAATG 60.006 57.895 0.00 0.00 34.04 2.82
292 293 2.208619 TGTGGCTTGGGTGCAATGG 61.209 57.895 0.00 0.00 34.04 3.16
293 294 2.604079 TGGCTTGGGTGCAATGGG 60.604 61.111 0.00 0.00 34.04 4.00
294 295 2.283821 GGCTTGGGTGCAATGGGA 60.284 61.111 0.00 0.00 34.04 4.37
295 296 1.912763 GGCTTGGGTGCAATGGGAA 60.913 57.895 0.00 0.00 34.04 3.97
296 297 1.293179 GCTTGGGTGCAATGGGAAC 59.707 57.895 0.00 0.00 0.00 3.62
297 298 1.586028 CTTGGGTGCAATGGGAACG 59.414 57.895 0.00 0.00 0.00 3.95
298 299 0.893270 CTTGGGTGCAATGGGAACGA 60.893 55.000 0.00 0.00 0.00 3.85
299 300 0.468214 TTGGGTGCAATGGGAACGAA 60.468 50.000 0.00 0.00 0.00 3.85
300 301 0.468214 TGGGTGCAATGGGAACGAAA 60.468 50.000 0.00 0.00 0.00 3.46
301 302 0.243636 GGGTGCAATGGGAACGAAAG 59.756 55.000 0.00 0.00 0.00 2.62
302 303 0.243636 GGTGCAATGGGAACGAAAGG 59.756 55.000 0.00 0.00 0.00 3.11
303 304 0.958822 GTGCAATGGGAACGAAAGGT 59.041 50.000 0.00 0.00 0.00 3.50
304 305 1.339929 GTGCAATGGGAACGAAAGGTT 59.660 47.619 0.00 0.00 42.96 3.50
305 306 2.554893 GTGCAATGGGAACGAAAGGTTA 59.445 45.455 0.00 0.00 39.50 2.85
306 307 3.192633 GTGCAATGGGAACGAAAGGTTAT 59.807 43.478 0.00 0.00 39.50 1.89
307 308 4.396790 GTGCAATGGGAACGAAAGGTTATA 59.603 41.667 0.00 0.00 39.50 0.98
308 309 5.067283 GTGCAATGGGAACGAAAGGTTATAT 59.933 40.000 0.00 0.00 39.50 0.86
309 310 5.654650 TGCAATGGGAACGAAAGGTTATATT 59.345 36.000 0.00 0.00 39.50 1.28
310 311 6.829298 TGCAATGGGAACGAAAGGTTATATTA 59.171 34.615 0.00 0.00 39.50 0.98
311 312 7.504238 TGCAATGGGAACGAAAGGTTATATTAT 59.496 33.333 0.00 0.00 39.50 1.28
312 313 9.005777 GCAATGGGAACGAAAGGTTATATTATA 57.994 33.333 0.00 0.00 39.50 0.98
317 318 9.868389 GGGAACGAAAGGTTATATTATAAAACG 57.132 33.333 0.00 0.00 39.50 3.60
326 327 9.822185 AGGTTATATTATAAAACGAAGAACCGT 57.178 29.630 0.00 0.00 45.64 4.83
330 331 5.520022 TTATAAAACGAAGAACCGTCTGC 57.480 39.130 0.00 0.00 42.54 4.26
331 332 1.658994 AAAACGAAGAACCGTCTGCA 58.341 45.000 0.00 0.00 42.54 4.41
332 333 1.878953 AAACGAAGAACCGTCTGCAT 58.121 45.000 0.00 0.00 42.54 3.96
333 334 1.878953 AACGAAGAACCGTCTGCATT 58.121 45.000 0.00 0.00 42.54 3.56
334 335 1.148310 ACGAAGAACCGTCTGCATTG 58.852 50.000 0.00 0.00 38.56 2.82
335 336 1.270094 ACGAAGAACCGTCTGCATTGA 60.270 47.619 0.00 0.00 38.56 2.57
336 337 1.391485 CGAAGAACCGTCTGCATTGAG 59.609 52.381 0.00 0.00 33.05 3.02
337 338 2.688507 GAAGAACCGTCTGCATTGAGA 58.311 47.619 0.00 0.00 33.05 3.27
338 339 3.265791 GAAGAACCGTCTGCATTGAGAT 58.734 45.455 0.00 0.00 33.05 2.75
339 340 2.625737 AGAACCGTCTGCATTGAGATG 58.374 47.619 0.00 0.00 36.32 2.90
340 341 2.027745 AGAACCGTCTGCATTGAGATGT 60.028 45.455 0.00 0.00 35.63 3.06
341 342 1.730501 ACCGTCTGCATTGAGATGTG 58.269 50.000 0.00 0.00 35.63 3.21
342 343 0.376152 CCGTCTGCATTGAGATGTGC 59.624 55.000 0.00 0.00 41.61 4.57
343 344 1.366679 CGTCTGCATTGAGATGTGCT 58.633 50.000 0.00 0.00 41.78 4.40
344 345 1.736126 CGTCTGCATTGAGATGTGCTT 59.264 47.619 0.00 0.00 41.78 3.91
345 346 2.161012 CGTCTGCATTGAGATGTGCTTT 59.839 45.455 0.00 0.00 41.78 3.51
346 347 3.727079 CGTCTGCATTGAGATGTGCTTTC 60.727 47.826 0.00 0.00 41.78 2.62
347 348 3.439476 GTCTGCATTGAGATGTGCTTTCT 59.561 43.478 0.00 0.00 41.78 2.52
348 349 3.439129 TCTGCATTGAGATGTGCTTTCTG 59.561 43.478 0.00 0.00 41.78 3.02
349 350 2.094906 TGCATTGAGATGTGCTTTCTGC 60.095 45.455 0.00 0.00 41.78 4.26
350 351 2.734492 GCATTGAGATGTGCTTTCTGCC 60.734 50.000 0.00 0.00 38.30 4.85
351 352 2.574006 TTGAGATGTGCTTTCTGCCT 57.426 45.000 0.00 0.00 42.00 4.75
352 353 1.817357 TGAGATGTGCTTTCTGCCTG 58.183 50.000 0.00 0.00 42.00 4.85
353 354 1.072806 TGAGATGTGCTTTCTGCCTGT 59.927 47.619 0.00 0.00 42.00 4.00
354 355 1.467734 GAGATGTGCTTTCTGCCTGTG 59.532 52.381 0.00 0.00 42.00 3.66
355 356 1.072806 AGATGTGCTTTCTGCCTGTGA 59.927 47.619 0.00 0.00 42.00 3.58
356 357 1.467734 GATGTGCTTTCTGCCTGTGAG 59.532 52.381 0.00 0.00 42.00 3.51
357 358 1.168407 TGTGCTTTCTGCCTGTGAGC 61.168 55.000 0.00 0.00 42.00 4.26
358 359 1.601759 TGCTTTCTGCCTGTGAGCC 60.602 57.895 0.00 0.00 42.00 4.70
359 360 1.303155 GCTTTCTGCCTGTGAGCCT 60.303 57.895 0.00 0.00 35.15 4.58
360 361 1.584380 GCTTTCTGCCTGTGAGCCTG 61.584 60.000 0.00 0.00 35.15 4.85
361 362 0.250640 CTTTCTGCCTGTGAGCCTGT 60.251 55.000 0.00 0.00 0.00 4.00
362 363 0.250467 TTTCTGCCTGTGAGCCTGTC 60.250 55.000 0.00 0.00 0.00 3.51
363 364 2.433838 CTGCCTGTGAGCCTGTCG 60.434 66.667 0.00 0.00 0.00 4.35
364 365 4.687215 TGCCTGTGAGCCTGTCGC 62.687 66.667 0.00 0.00 36.09 5.19
385 386 3.147595 CCCTGCCCGTCTCGATCA 61.148 66.667 0.00 0.00 0.00 2.92
597 608 2.621338 CTAGTTCCTTTCATGCGCTCA 58.379 47.619 9.73 0.00 0.00 4.26
706 751 1.683943 CATGGGCATTCTCCATCGTT 58.316 50.000 0.00 0.00 42.63 3.85
755 812 1.815817 TACCTCTTCTGTGCGCTGCA 61.816 55.000 9.73 7.03 35.60 4.41
1128 1234 2.125512 GCTGACGGAACAGGCGAT 60.126 61.111 0.00 0.00 38.22 4.58
1173 1279 2.605338 CGACACTTTTGCCAACATGGAG 60.605 50.000 0.00 0.00 40.96 3.86
1285 1416 0.676782 CCTCACGTCCCCCAATGTTC 60.677 60.000 0.00 0.00 0.00 3.18
1287 1418 0.323629 TCACGTCCCCCAATGTTCTC 59.676 55.000 0.00 0.00 0.00 2.87
1602 1773 8.564364 TTCTAGTATCTGTCCTAGTTCCTCTA 57.436 38.462 0.00 0.00 33.81 2.43
1640 1811 4.740822 GGCGGTGGTGCTGGGATT 62.741 66.667 0.00 0.00 34.52 3.01
1642 1813 2.034066 CGGTGGTGCTGGGATTGT 59.966 61.111 0.00 0.00 0.00 2.71
1749 1944 1.339097 GCCCCAGACGGTACATCTAT 58.661 55.000 0.00 0.00 0.00 1.98
1791 1986 1.067354 GGTAACTTCGCGGAGGAGAAA 60.067 52.381 20.69 0.00 31.40 2.52
1793 1988 1.797025 AACTTCGCGGAGGAGAAAAG 58.203 50.000 20.69 8.87 31.40 2.27
1875 2076 2.048503 GGTGACCAAGACCGTCGG 60.049 66.667 10.48 10.48 32.68 4.79
1941 2143 1.971357 AGAAAGGAGTTCGAGGCAGAA 59.029 47.619 0.00 0.00 41.52 3.02
2464 2666 2.122413 TCAGGTGGGTGTGGAGCT 60.122 61.111 0.00 0.00 0.00 4.09
2493 2695 1.359459 GGAACACAATCCTCGACGCC 61.359 60.000 0.00 0.00 36.50 5.68
2754 2965 1.602165 GGTCGTGTTCGCTCTTCTTCA 60.602 52.381 0.00 0.00 36.96 3.02
2763 2974 1.066914 GCTCTTCTTCAGACAGCACG 58.933 55.000 3.06 0.00 32.88 5.34
2768 2979 2.031012 TTCAGACAGCACGGGCAG 59.969 61.111 14.57 6.41 44.61 4.85
2860 3107 4.503714 AAGACTTTTTCAGAGGGTGTGA 57.496 40.909 0.00 0.00 0.00 3.58
2874 3122 2.639065 GGTGTGACAAGGTCAGTCAAA 58.361 47.619 0.00 0.00 46.50 2.69
2957 3214 1.601166 TCAAGTCTCGGTCGACTGAA 58.399 50.000 26.33 15.12 43.14 3.02
2971 3228 5.867716 GGTCGACTGAAATTTAGCAAGACTA 59.132 40.000 16.46 0.00 0.00 2.59
3000 3258 0.530744 TAGACCATTGAAGACGCGCT 59.469 50.000 5.73 0.50 0.00 5.92
3001 3259 1.016130 AGACCATTGAAGACGCGCTG 61.016 55.000 5.73 1.02 0.00 5.18
3036 3299 7.859325 TTTTGACACTACAATATTAGAGGCC 57.141 36.000 0.00 0.00 0.00 5.19
3066 3329 9.586435 GCAAGTATATGAAGGCATTTTACTTTT 57.414 29.630 0.00 0.00 38.64 2.27
3158 4974 9.076596 GGATTGTGAACTTTATTTAATCAGCAC 57.923 33.333 0.00 0.00 0.00 4.40
3159 4975 8.986477 ATTGTGAACTTTATTTAATCAGCACC 57.014 30.769 0.00 0.00 0.00 5.01
3160 4976 6.919721 TGTGAACTTTATTTAATCAGCACCC 58.080 36.000 0.00 0.00 0.00 4.61
3161 4977 6.719370 TGTGAACTTTATTTAATCAGCACCCT 59.281 34.615 0.00 0.00 0.00 4.34
3162 4978 7.029563 GTGAACTTTATTTAATCAGCACCCTG 58.970 38.462 0.00 0.00 40.54 4.45
3163 4979 5.582689 ACTTTATTTAATCAGCACCCTGC 57.417 39.130 0.00 0.00 45.46 4.85
3173 4989 3.226884 GCACCCTGCGACTTTTAGA 57.773 52.632 0.00 0.00 31.71 2.10
3174 4990 0.796927 GCACCCTGCGACTTTTAGAC 59.203 55.000 0.00 0.00 31.71 2.59
3175 4991 1.876416 GCACCCTGCGACTTTTAGACA 60.876 52.381 0.00 0.00 31.71 3.41
3176 4992 2.069273 CACCCTGCGACTTTTAGACAG 58.931 52.381 0.00 0.00 0.00 3.51
3177 4993 1.002087 ACCCTGCGACTTTTAGACAGG 59.998 52.381 0.00 0.00 46.10 4.00
3178 4994 1.002087 CCCTGCGACTTTTAGACAGGT 59.998 52.381 6.60 0.00 45.26 4.00
3179 4995 2.550208 CCCTGCGACTTTTAGACAGGTT 60.550 50.000 6.60 0.00 45.26 3.50
3180 4996 3.139077 CCTGCGACTTTTAGACAGGTTT 58.861 45.455 0.00 0.00 42.42 3.27
3181 4997 3.564225 CCTGCGACTTTTAGACAGGTTTT 59.436 43.478 0.00 0.00 42.42 2.43
3182 4998 4.036380 CCTGCGACTTTTAGACAGGTTTTT 59.964 41.667 0.00 0.00 42.42 1.94
3245 5079 8.629158 GTTCATAACAAAGCCCATATATGTGAA 58.371 33.333 11.73 7.71 0.00 3.18
3252 5086 7.230108 ACAAAGCCCATATATGTGAATCTTGAG 59.770 37.037 11.73 6.47 0.00 3.02
3258 5092 8.152898 CCCATATATGTGAATCTTGAGTCTTGA 58.847 37.037 11.73 0.00 0.00 3.02
3259 5093 8.986847 CCATATATGTGAATCTTGAGTCTTGAC 58.013 37.037 11.73 0.00 0.00 3.18
3260 5094 9.761504 CATATATGTGAATCTTGAGTCTTGACT 57.238 33.333 4.43 2.59 0.00 3.41
3261 5095 9.979578 ATATATGTGAATCTTGAGTCTTGACTC 57.020 33.333 20.32 20.32 37.27 3.36
3262 5096 5.798125 TGTGAATCTTGAGTCTTGACTCT 57.202 39.130 25.21 9.91 37.62 3.24
3263 5097 5.777802 TGTGAATCTTGAGTCTTGACTCTC 58.222 41.667 25.21 16.76 37.62 3.20
3264 5098 4.856487 GTGAATCTTGAGTCTTGACTCTCG 59.144 45.833 25.21 17.68 37.62 4.04
3319 5153 9.199982 TCGAAGTAGTTACATAGGAAAACTTTG 57.800 33.333 5.49 0.00 35.23 2.77
3325 5159 8.974060 AGTTACATAGGAAAACTTTGACAAGA 57.026 30.769 0.00 0.00 33.08 3.02
3335 5169 8.817100 GGAAAACTTTGACAAGAAAATACCTTG 58.183 33.333 0.00 0.00 44.75 3.61
3346 5190 6.029346 AGAAAATACCTTGGCAAATCACTG 57.971 37.500 0.00 0.00 0.00 3.66
3394 5238 5.033589 TCTTGGCAACCACAAATTTGATT 57.966 34.783 24.64 12.22 30.78 2.57
3450 5294 6.784031 ACTTTTCAGGATCTCCAACTGTATT 58.216 36.000 0.00 0.00 38.89 1.89
3482 5326 4.320202 CCTTTGAAACGAGGTACACCATTG 60.320 45.833 0.38 0.00 38.89 2.82
3483 5327 2.147958 TGAAACGAGGTACACCATTGC 58.852 47.619 0.38 0.00 38.89 3.56
3504 5348 4.216042 TGCTCAAACTATGGTGTGAACATG 59.784 41.667 3.43 0.00 39.00 3.21
3535 5379 8.768955 GTTAGAAAGGTTATCTGCATACATGAG 58.231 37.037 0.00 0.00 0.00 2.90
3701 5549 6.563422 TGAACAAGGTTGAGATTTGAAGTTG 58.437 36.000 0.00 0.00 0.00 3.16
3704 5552 6.742109 ACAAGGTTGAGATTTGAAGTTGATG 58.258 36.000 0.00 0.00 0.00 3.07
3781 5829 7.807907 ACTGTTATTTAAATTGTTCCGCTTCAG 59.192 33.333 5.91 4.00 0.00 3.02
3783 5831 7.593273 TGTTATTTAAATTGTTCCGCTTCAGTG 59.407 33.333 5.91 0.00 0.00 3.66
3802 5850 8.812513 TTCAGTGAATTCAGTAATCATGGAAT 57.187 30.769 15.38 0.00 0.00 3.01
3808 5856 1.948834 CAGTAATCATGGAATGCCGCA 59.051 47.619 0.00 0.00 46.21 5.69
3813 5861 2.346766 TCATGGAATGCCGCATTACT 57.653 45.000 25.36 11.10 46.21 2.24
3818 5866 5.871477 CATGGAATGCCGCATTACTATGCT 61.871 45.833 25.36 6.12 45.83 3.79
3829 5877 5.459536 CATTACTATGCTGCTCTAGGACA 57.540 43.478 0.00 0.00 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 6.935771 GTGGACTAACGAGAGAGGATAAGATA 59.064 42.308 0.00 0.00 0.00 1.98
3 4 5.124645 GTGGACTAACGAGAGAGGATAAGA 58.875 45.833 0.00 0.00 0.00 2.10
5 6 4.079901 AGGTGGACTAACGAGAGAGGATAA 60.080 45.833 0.00 0.00 0.00 1.75
6 7 3.458857 AGGTGGACTAACGAGAGAGGATA 59.541 47.826 0.00 0.00 0.00 2.59
7 8 2.242708 AGGTGGACTAACGAGAGAGGAT 59.757 50.000 0.00 0.00 0.00 3.24
8 9 1.634459 AGGTGGACTAACGAGAGAGGA 59.366 52.381 0.00 0.00 0.00 3.71
9 10 2.131776 AGGTGGACTAACGAGAGAGG 57.868 55.000 0.00 0.00 0.00 3.69
12 13 2.366533 TGCTAGGTGGACTAACGAGAG 58.633 52.381 0.00 0.00 0.00 3.20
14 15 2.753452 TCTTGCTAGGTGGACTAACGAG 59.247 50.000 0.00 0.00 32.66 4.18
15 16 2.799017 TCTTGCTAGGTGGACTAACGA 58.201 47.619 0.00 0.00 0.00 3.85
16 17 3.802948 ATCTTGCTAGGTGGACTAACG 57.197 47.619 0.00 0.00 0.00 3.18
17 18 5.128991 AGGTTATCTTGCTAGGTGGACTAAC 59.871 44.000 0.00 0.00 0.00 2.34
18 19 5.278061 AGGTTATCTTGCTAGGTGGACTAA 58.722 41.667 0.00 0.00 0.00 2.24
19 20 4.880164 AGGTTATCTTGCTAGGTGGACTA 58.120 43.478 0.00 0.00 0.00 2.59
20 21 3.725634 AGGTTATCTTGCTAGGTGGACT 58.274 45.455 0.00 0.00 0.00 3.85
21 22 5.279556 GGATAGGTTATCTTGCTAGGTGGAC 60.280 48.000 0.00 0.00 35.52 4.02
22 23 4.838986 GGATAGGTTATCTTGCTAGGTGGA 59.161 45.833 0.00 0.00 35.52 4.02
23 24 4.841246 AGGATAGGTTATCTTGCTAGGTGG 59.159 45.833 0.00 0.00 35.52 4.61
24 25 7.179338 ACATAGGATAGGTTATCTTGCTAGGTG 59.821 40.741 0.00 0.00 26.50 4.00
25 26 7.249715 ACATAGGATAGGTTATCTTGCTAGGT 58.750 38.462 0.00 0.00 26.50 3.08
26 27 7.726033 ACATAGGATAGGTTATCTTGCTAGG 57.274 40.000 0.00 0.00 26.50 3.02
27 28 9.469097 AGTACATAGGATAGGTTATCTTGCTAG 57.531 37.037 0.00 0.00 36.69 3.42
28 29 9.244292 CAGTACATAGGATAGGTTATCTTGCTA 57.756 37.037 0.00 0.00 36.69 3.49
29 30 7.730784 ACAGTACATAGGATAGGTTATCTTGCT 59.269 37.037 0.00 0.00 36.69 3.91
30 31 7.897864 ACAGTACATAGGATAGGTTATCTTGC 58.102 38.462 0.00 0.00 36.69 4.01
33 34 8.871125 CCAAACAGTACATAGGATAGGTTATCT 58.129 37.037 0.00 0.00 36.69 1.98
34 35 8.648693 ACCAAACAGTACATAGGATAGGTTATC 58.351 37.037 0.00 0.00 36.69 1.75
35 36 8.562949 ACCAAACAGTACATAGGATAGGTTAT 57.437 34.615 0.00 0.00 36.69 1.89
36 37 7.983166 ACCAAACAGTACATAGGATAGGTTA 57.017 36.000 0.00 0.00 36.69 2.85
37 38 6.886178 ACCAAACAGTACATAGGATAGGTT 57.114 37.500 0.00 0.00 36.69 3.50
38 39 7.787904 TCATACCAAACAGTACATAGGATAGGT 59.212 37.037 0.00 0.00 39.76 3.08
39 40 8.190326 TCATACCAAACAGTACATAGGATAGG 57.810 38.462 0.00 0.00 0.00 2.57
40 41 9.645059 CATCATACCAAACAGTACATAGGATAG 57.355 37.037 0.00 0.00 0.00 2.08
41 42 8.094548 GCATCATACCAAACAGTACATAGGATA 58.905 37.037 0.00 0.00 0.00 2.59
42 43 6.936900 GCATCATACCAAACAGTACATAGGAT 59.063 38.462 0.00 0.00 0.00 3.24
43 44 6.099701 AGCATCATACCAAACAGTACATAGGA 59.900 38.462 0.00 0.00 0.00 2.94
44 45 6.291377 AGCATCATACCAAACAGTACATAGG 58.709 40.000 0.00 0.00 0.00 2.57
45 46 8.929746 CATAGCATCATACCAAACAGTACATAG 58.070 37.037 0.00 0.00 0.00 2.23
46 47 7.387673 GCATAGCATCATACCAAACAGTACATA 59.612 37.037 0.00 0.00 0.00 2.29
47 48 6.205464 GCATAGCATCATACCAAACAGTACAT 59.795 38.462 0.00 0.00 0.00 2.29
48 49 5.527214 GCATAGCATCATACCAAACAGTACA 59.473 40.000 0.00 0.00 0.00 2.90
49 50 5.049405 GGCATAGCATCATACCAAACAGTAC 60.049 44.000 0.00 0.00 0.00 2.73
50 51 5.063204 GGCATAGCATCATACCAAACAGTA 58.937 41.667 0.00 0.00 0.00 2.74
51 52 3.885297 GGCATAGCATCATACCAAACAGT 59.115 43.478 0.00 0.00 0.00 3.55
52 53 3.884693 TGGCATAGCATCATACCAAACAG 59.115 43.478 0.00 0.00 0.00 3.16
53 54 3.895998 TGGCATAGCATCATACCAAACA 58.104 40.909 0.00 0.00 0.00 2.83
54 55 4.916983 TTGGCATAGCATCATACCAAAC 57.083 40.909 0.00 0.00 34.39 2.93
55 56 5.929058 TTTTGGCATAGCATCATACCAAA 57.071 34.783 0.00 0.00 43.43 3.28
56 57 6.482898 AATTTTGGCATAGCATCATACCAA 57.517 33.333 0.00 0.00 35.46 3.67
57 58 6.482898 AAATTTTGGCATAGCATCATACCA 57.517 33.333 0.00 0.00 0.00 3.25
58 59 8.526147 AGATAAATTTTGGCATAGCATCATACC 58.474 33.333 0.00 0.00 0.00 2.73
59 60 9.565213 GAGATAAATTTTGGCATAGCATCATAC 57.435 33.333 0.00 0.00 0.00 2.39
60 61 8.453320 CGAGATAAATTTTGGCATAGCATCATA 58.547 33.333 0.00 0.00 0.00 2.15
61 62 7.040201 ACGAGATAAATTTTGGCATAGCATCAT 60.040 33.333 0.00 0.00 0.00 2.45
62 63 6.262944 ACGAGATAAATTTTGGCATAGCATCA 59.737 34.615 0.00 0.00 0.00 3.07
63 64 6.672147 ACGAGATAAATTTTGGCATAGCATC 58.328 36.000 0.00 0.00 0.00 3.91
64 65 6.566564 CGACGAGATAAATTTTGGCATAGCAT 60.567 38.462 0.00 0.00 0.00 3.79
65 66 5.277297 CGACGAGATAAATTTTGGCATAGCA 60.277 40.000 0.00 0.00 0.00 3.49
66 67 5.050363 TCGACGAGATAAATTTTGGCATAGC 60.050 40.000 0.00 0.00 0.00 2.97
67 68 6.019075 TGTCGACGAGATAAATTTTGGCATAG 60.019 38.462 11.62 0.00 0.00 2.23
68 69 5.813157 TGTCGACGAGATAAATTTTGGCATA 59.187 36.000 11.62 0.00 0.00 3.14
69 70 4.634004 TGTCGACGAGATAAATTTTGGCAT 59.366 37.500 11.62 0.00 0.00 4.40
70 71 3.997681 TGTCGACGAGATAAATTTTGGCA 59.002 39.130 11.62 0.00 0.00 4.92
71 72 4.593597 TGTCGACGAGATAAATTTTGGC 57.406 40.909 11.62 0.00 0.00 4.52
72 73 7.021196 ACAATTGTCGACGAGATAAATTTTGG 58.979 34.615 11.90 2.26 33.67 3.28
73 74 9.536558 TTACAATTGTCGACGAGATAAATTTTG 57.463 29.630 15.85 10.23 33.67 2.44
76 77 9.702726 CATTTACAATTGTCGACGAGATAAATT 57.297 29.630 15.85 13.06 33.67 1.82
77 78 9.093970 TCATTTACAATTGTCGACGAGATAAAT 57.906 29.630 15.85 15.67 33.67 1.40
78 79 8.468720 TCATTTACAATTGTCGACGAGATAAA 57.531 30.769 15.85 14.31 33.67 1.40
79 80 8.642908 ATCATTTACAATTGTCGACGAGATAA 57.357 30.769 15.85 6.83 34.46 1.75
80 81 8.642908 AATCATTTACAATTGTCGACGAGATA 57.357 30.769 15.85 0.84 0.00 1.98
81 82 7.539712 AATCATTTACAATTGTCGACGAGAT 57.460 32.000 15.85 9.42 0.00 2.75
82 83 6.961359 AATCATTTACAATTGTCGACGAGA 57.039 33.333 15.85 7.51 0.00 4.04
83 84 7.634817 GGTAAATCATTTACAATTGTCGACGAG 59.365 37.037 19.72 0.95 45.63 4.18
84 85 7.332430 AGGTAAATCATTTACAATTGTCGACGA 59.668 33.333 19.72 8.21 45.63 4.20
85 86 7.461107 AGGTAAATCATTTACAATTGTCGACG 58.539 34.615 19.72 3.05 45.63 5.12
86 87 9.620660 AAAGGTAAATCATTTACAATTGTCGAC 57.379 29.630 19.72 9.11 45.63 4.20
87 88 9.834628 GAAAGGTAAATCATTTACAATTGTCGA 57.165 29.630 19.72 8.26 45.63 4.20
88 89 8.785101 CGAAAGGTAAATCATTTACAATTGTCG 58.215 33.333 19.72 15.73 45.63 4.35
89 90 9.620660 ACGAAAGGTAAATCATTTACAATTGTC 57.379 29.630 19.72 9.59 45.63 3.18
90 91 9.974980 AACGAAAGGTAAATCATTTACAATTGT 57.025 25.926 19.72 16.68 45.63 2.71
94 95 9.453325 GTCAAACGAAAGGTAAATCATTTACAA 57.547 29.630 19.72 0.00 45.63 2.41
95 96 7.799447 CGTCAAACGAAAGGTAAATCATTTACA 59.201 33.333 19.72 0.00 46.05 2.41
96 97 8.142348 CGTCAAACGAAAGGTAAATCATTTAC 57.858 34.615 11.35 11.35 46.05 2.01
113 114 6.689669 GGGGTAAATCATTTATTCGTCAAACG 59.310 38.462 0.00 0.00 44.19 3.60
114 115 7.768240 AGGGGTAAATCATTTATTCGTCAAAC 58.232 34.615 0.00 0.00 0.00 2.93
115 116 7.612244 TGAGGGGTAAATCATTTATTCGTCAAA 59.388 33.333 12.00 0.00 30.15 2.69
116 117 7.113437 TGAGGGGTAAATCATTTATTCGTCAA 58.887 34.615 12.00 2.49 30.15 3.18
117 118 6.654959 TGAGGGGTAAATCATTTATTCGTCA 58.345 36.000 11.05 11.05 0.00 4.35
118 119 7.497909 TCTTGAGGGGTAAATCATTTATTCGTC 59.502 37.037 0.00 1.85 0.00 4.20
119 120 7.343357 TCTTGAGGGGTAAATCATTTATTCGT 58.657 34.615 0.00 0.00 0.00 3.85
120 121 7.801716 TCTTGAGGGGTAAATCATTTATTCG 57.198 36.000 0.00 0.00 0.00 3.34
180 181 9.687717 CGCATGAAAAATATACCAAAACATTTC 57.312 29.630 0.00 0.00 0.00 2.17
181 182 9.213799 ACGCATGAAAAATATACCAAAACATTT 57.786 25.926 0.00 0.00 0.00 2.32
182 183 8.655092 CACGCATGAAAAATATACCAAAACATT 58.345 29.630 0.00 0.00 0.00 2.71
183 184 7.277539 CCACGCATGAAAAATATACCAAAACAT 59.722 33.333 0.00 0.00 0.00 2.71
184 185 6.587990 CCACGCATGAAAAATATACCAAAACA 59.412 34.615 0.00 0.00 0.00 2.83
185 186 6.035542 CCCACGCATGAAAAATATACCAAAAC 59.964 38.462 0.00 0.00 0.00 2.43
186 187 6.102663 CCCACGCATGAAAAATATACCAAAA 58.897 36.000 0.00 0.00 0.00 2.44
187 188 5.186021 ACCCACGCATGAAAAATATACCAAA 59.814 36.000 0.00 0.00 0.00 3.28
188 189 4.707448 ACCCACGCATGAAAAATATACCAA 59.293 37.500 0.00 0.00 0.00 3.67
189 190 4.097135 CACCCACGCATGAAAAATATACCA 59.903 41.667 0.00 0.00 0.00 3.25
190 191 4.606961 CACCCACGCATGAAAAATATACC 58.393 43.478 0.00 0.00 0.00 2.73
191 192 4.041723 GCACCCACGCATGAAAAATATAC 58.958 43.478 0.00 0.00 0.00 1.47
192 193 3.696548 TGCACCCACGCATGAAAAATATA 59.303 39.130 0.00 0.00 36.86 0.86
193 194 2.495270 TGCACCCACGCATGAAAAATAT 59.505 40.909 0.00 0.00 36.86 1.28
194 195 1.889170 TGCACCCACGCATGAAAAATA 59.111 42.857 0.00 0.00 36.86 1.40
195 196 0.678395 TGCACCCACGCATGAAAAAT 59.322 45.000 0.00 0.00 36.86 1.82
196 197 0.249238 GTGCACCCACGCATGAAAAA 60.249 50.000 5.22 0.00 45.26 1.94
197 198 1.106351 AGTGCACCCACGCATGAAAA 61.106 50.000 14.63 0.00 46.62 2.29
198 199 1.528076 AGTGCACCCACGCATGAAA 60.528 52.632 14.63 0.00 46.62 2.69
199 200 2.112928 AGTGCACCCACGCATGAA 59.887 55.556 14.63 0.00 46.62 2.57
200 201 2.669229 CAGTGCACCCACGCATGA 60.669 61.111 14.63 0.00 46.62 3.07
201 202 2.669229 TCAGTGCACCCACGCATG 60.669 61.111 14.63 3.17 46.62 4.06
202 203 2.189191 ATCTCAGTGCACCCACGCAT 62.189 55.000 14.63 0.00 46.62 4.73
203 204 2.882677 ATCTCAGTGCACCCACGCA 61.883 57.895 14.63 0.00 46.62 5.24
204 205 2.046892 ATCTCAGTGCACCCACGC 60.047 61.111 14.63 0.00 46.62 5.34
205 206 1.742880 CCATCTCAGTGCACCCACG 60.743 63.158 14.63 0.00 46.62 4.94
206 207 1.377725 CCCATCTCAGTGCACCCAC 60.378 63.158 14.63 0.00 42.39 4.61
207 208 0.915872 ATCCCATCTCAGTGCACCCA 60.916 55.000 14.63 0.00 0.00 4.51
208 209 0.257039 AATCCCATCTCAGTGCACCC 59.743 55.000 14.63 0.00 0.00 4.61
209 210 1.065199 TGAATCCCATCTCAGTGCACC 60.065 52.381 14.63 0.00 0.00 5.01
210 211 2.408271 TGAATCCCATCTCAGTGCAC 57.592 50.000 9.40 9.40 0.00 4.57
211 212 2.618816 GGTTGAATCCCATCTCAGTGCA 60.619 50.000 0.00 0.00 0.00 4.57
212 213 2.019984 GGTTGAATCCCATCTCAGTGC 58.980 52.381 0.00 0.00 0.00 4.40
213 214 3.354948 TGGTTGAATCCCATCTCAGTG 57.645 47.619 0.00 0.00 0.00 3.66
214 215 4.598036 AATGGTTGAATCCCATCTCAGT 57.402 40.909 0.00 0.00 41.87 3.41
215 216 5.688807 AGTAATGGTTGAATCCCATCTCAG 58.311 41.667 0.00 0.00 41.87 3.35
216 217 5.715439 AGTAATGGTTGAATCCCATCTCA 57.285 39.130 0.00 0.00 41.87 3.27
217 218 6.830838 AGAAAGTAATGGTTGAATCCCATCTC 59.169 38.462 0.00 0.00 41.87 2.75
218 219 6.735556 AGAAAGTAATGGTTGAATCCCATCT 58.264 36.000 0.00 0.00 41.87 2.90
219 220 6.603201 TGAGAAAGTAATGGTTGAATCCCATC 59.397 38.462 0.00 0.00 41.87 3.51
220 221 6.493166 TGAGAAAGTAATGGTTGAATCCCAT 58.507 36.000 0.00 0.00 44.62 4.00
221 222 5.886609 TGAGAAAGTAATGGTTGAATCCCA 58.113 37.500 0.00 0.00 36.16 4.37
222 223 6.834168 TTGAGAAAGTAATGGTTGAATCCC 57.166 37.500 0.00 0.00 0.00 3.85
223 224 7.809806 CAGTTTGAGAAAGTAATGGTTGAATCC 59.190 37.037 0.00 0.00 0.00 3.01
224 225 8.567948 TCAGTTTGAGAAAGTAATGGTTGAATC 58.432 33.333 0.00 0.00 0.00 2.52
225 226 8.352942 GTCAGTTTGAGAAAGTAATGGTTGAAT 58.647 33.333 0.00 0.00 0.00 2.57
226 227 7.338196 TGTCAGTTTGAGAAAGTAATGGTTGAA 59.662 33.333 0.00 0.00 0.00 2.69
227 228 6.826231 TGTCAGTTTGAGAAAGTAATGGTTGA 59.174 34.615 0.00 0.00 0.00 3.18
228 229 7.026631 TGTCAGTTTGAGAAAGTAATGGTTG 57.973 36.000 0.00 0.00 0.00 3.77
229 230 6.828785 ACTGTCAGTTTGAGAAAGTAATGGTT 59.171 34.615 0.00 0.00 0.00 3.67
230 231 6.260936 CACTGTCAGTTTGAGAAAGTAATGGT 59.739 38.462 1.67 0.00 0.00 3.55
231 232 6.293626 CCACTGTCAGTTTGAGAAAGTAATGG 60.294 42.308 1.67 0.00 0.00 3.16
232 233 6.260936 ACCACTGTCAGTTTGAGAAAGTAATG 59.739 38.462 1.67 0.00 0.00 1.90
233 234 6.357367 ACCACTGTCAGTTTGAGAAAGTAAT 58.643 36.000 1.67 0.00 0.00 1.89
234 235 5.741011 ACCACTGTCAGTTTGAGAAAGTAA 58.259 37.500 1.67 0.00 0.00 2.24
235 236 5.353394 ACCACTGTCAGTTTGAGAAAGTA 57.647 39.130 1.67 0.00 0.00 2.24
236 237 4.222124 ACCACTGTCAGTTTGAGAAAGT 57.778 40.909 1.67 0.00 0.00 2.66
237 238 5.567138 AAACCACTGTCAGTTTGAGAAAG 57.433 39.130 1.67 0.00 34.97 2.62
238 239 5.975693 AAAACCACTGTCAGTTTGAGAAA 57.024 34.783 1.67 0.00 36.36 2.52
239 240 5.475220 TCAAAAACCACTGTCAGTTTGAGAA 59.525 36.000 11.36 0.00 36.36 2.87
240 241 5.007034 TCAAAAACCACTGTCAGTTTGAGA 58.993 37.500 11.36 5.40 36.36 3.27
241 242 5.309323 TCAAAAACCACTGTCAGTTTGAG 57.691 39.130 11.36 1.53 36.36 3.02
242 243 5.713792 TTCAAAAACCACTGTCAGTTTGA 57.286 34.783 11.36 11.36 36.36 2.69
243 244 5.925969 AGTTTCAAAAACCACTGTCAGTTTG 59.074 36.000 1.67 5.42 36.36 2.93
244 245 5.925969 CAGTTTCAAAAACCACTGTCAGTTT 59.074 36.000 1.67 0.00 37.80 2.66
245 246 5.010617 ACAGTTTCAAAAACCACTGTCAGTT 59.989 36.000 1.67 0.00 45.38 3.16
246 247 4.522789 ACAGTTTCAAAAACCACTGTCAGT 59.477 37.500 0.00 0.00 45.38 3.41
247 248 5.059404 ACAGTTTCAAAAACCACTGTCAG 57.941 39.130 0.00 0.00 45.38 3.51
251 252 5.804979 CACCTAACAGTTTCAAAAACCACTG 59.195 40.000 0.00 0.00 42.08 3.66
252 253 5.479027 ACACCTAACAGTTTCAAAAACCACT 59.521 36.000 0.00 0.00 0.00 4.00
253 254 5.575218 CACACCTAACAGTTTCAAAAACCAC 59.425 40.000 0.00 0.00 0.00 4.16
254 255 5.336849 CCACACCTAACAGTTTCAAAAACCA 60.337 40.000 0.00 0.00 0.00 3.67
255 256 5.106442 CCACACCTAACAGTTTCAAAAACC 58.894 41.667 0.00 0.00 0.00 3.27
256 257 4.565166 GCCACACCTAACAGTTTCAAAAAC 59.435 41.667 0.00 0.00 0.00 2.43
257 258 4.464597 AGCCACACCTAACAGTTTCAAAAA 59.535 37.500 0.00 0.00 0.00 1.94
258 259 4.020543 AGCCACACCTAACAGTTTCAAAA 58.979 39.130 0.00 0.00 0.00 2.44
259 260 3.626930 AGCCACACCTAACAGTTTCAAA 58.373 40.909 0.00 0.00 0.00 2.69
260 261 3.290948 AGCCACACCTAACAGTTTCAA 57.709 42.857 0.00 0.00 0.00 2.69
261 262 2.948979 CAAGCCACACCTAACAGTTTCA 59.051 45.455 0.00 0.00 0.00 2.69
262 263 2.293399 CCAAGCCACACCTAACAGTTTC 59.707 50.000 0.00 0.00 0.00 2.78
263 264 2.306847 CCAAGCCACACCTAACAGTTT 58.693 47.619 0.00 0.00 0.00 2.66
264 265 1.478654 CCCAAGCCACACCTAACAGTT 60.479 52.381 0.00 0.00 0.00 3.16
265 266 0.110486 CCCAAGCCACACCTAACAGT 59.890 55.000 0.00 0.00 0.00 3.55
266 267 0.110486 ACCCAAGCCACACCTAACAG 59.890 55.000 0.00 0.00 0.00 3.16
267 268 0.179004 CACCCAAGCCACACCTAACA 60.179 55.000 0.00 0.00 0.00 2.41
268 269 1.524008 GCACCCAAGCCACACCTAAC 61.524 60.000 0.00 0.00 0.00 2.34
269 270 1.228429 GCACCCAAGCCACACCTAA 60.228 57.895 0.00 0.00 0.00 2.69
270 271 2.000825 TTGCACCCAAGCCACACCTA 62.001 55.000 0.00 0.00 0.00 3.08
271 272 2.661574 ATTGCACCCAAGCCACACCT 62.662 55.000 0.00 0.00 33.80 4.00
272 273 2.209315 ATTGCACCCAAGCCACACC 61.209 57.895 0.00 0.00 33.80 4.16
273 274 1.005867 CATTGCACCCAAGCCACAC 60.006 57.895 0.00 0.00 33.80 3.82
274 275 2.208619 CCATTGCACCCAAGCCACA 61.209 57.895 0.00 0.00 33.80 4.17
275 276 2.658422 CCATTGCACCCAAGCCAC 59.342 61.111 0.00 0.00 33.80 5.01
276 277 2.604079 CCCATTGCACCCAAGCCA 60.604 61.111 0.00 0.00 33.80 4.75
277 278 1.912763 TTCCCATTGCACCCAAGCC 60.913 57.895 0.00 0.00 33.80 4.35
278 279 1.293179 GTTCCCATTGCACCCAAGC 59.707 57.895 0.00 0.00 33.80 4.01
279 280 0.893270 TCGTTCCCATTGCACCCAAG 60.893 55.000 0.00 0.00 33.80 3.61
280 281 0.468214 TTCGTTCCCATTGCACCCAA 60.468 50.000 0.00 0.00 35.01 4.12
281 282 0.468214 TTTCGTTCCCATTGCACCCA 60.468 50.000 0.00 0.00 0.00 4.51
282 283 0.243636 CTTTCGTTCCCATTGCACCC 59.756 55.000 0.00 0.00 0.00 4.61
283 284 0.243636 CCTTTCGTTCCCATTGCACC 59.756 55.000 0.00 0.00 0.00 5.01
284 285 0.958822 ACCTTTCGTTCCCATTGCAC 59.041 50.000 0.00 0.00 0.00 4.57
285 286 1.698506 AACCTTTCGTTCCCATTGCA 58.301 45.000 0.00 0.00 0.00 4.08
286 287 5.767816 ATATAACCTTTCGTTCCCATTGC 57.232 39.130 0.00 0.00 35.79 3.56
291 292 9.868389 CGTTTTATAATATAACCTTTCGTTCCC 57.132 33.333 0.00 0.00 35.79 3.97
300 301 9.822185 ACGGTTCTTCGTTTTATAATATAACCT 57.178 29.630 0.00 0.00 40.85 3.50
304 305 8.971321 GCAGACGGTTCTTCGTTTTATAATATA 58.029 33.333 0.00 0.00 43.96 0.86
305 306 7.493320 TGCAGACGGTTCTTCGTTTTATAATAT 59.507 33.333 0.00 0.00 43.96 1.28
306 307 6.812656 TGCAGACGGTTCTTCGTTTTATAATA 59.187 34.615 0.00 0.00 43.96 0.98
307 308 5.640357 TGCAGACGGTTCTTCGTTTTATAAT 59.360 36.000 0.00 0.00 43.96 1.28
308 309 4.989797 TGCAGACGGTTCTTCGTTTTATAA 59.010 37.500 0.00 0.00 43.96 0.98
309 310 4.558178 TGCAGACGGTTCTTCGTTTTATA 58.442 39.130 0.00 0.00 43.96 0.98
310 311 3.395639 TGCAGACGGTTCTTCGTTTTAT 58.604 40.909 0.00 0.00 43.96 1.40
311 312 2.823984 TGCAGACGGTTCTTCGTTTTA 58.176 42.857 0.00 0.00 43.96 1.52
312 313 1.658994 TGCAGACGGTTCTTCGTTTT 58.341 45.000 0.00 0.00 43.96 2.43
313 314 1.878953 ATGCAGACGGTTCTTCGTTT 58.121 45.000 0.00 0.00 43.96 3.60
314 315 1.531149 CAATGCAGACGGTTCTTCGTT 59.469 47.619 0.00 0.00 43.96 3.85
315 316 1.148310 CAATGCAGACGGTTCTTCGT 58.852 50.000 0.00 0.00 46.83 3.85
316 317 1.391485 CTCAATGCAGACGGTTCTTCG 59.609 52.381 0.00 0.00 0.00 3.79
317 318 2.688507 TCTCAATGCAGACGGTTCTTC 58.311 47.619 0.00 0.00 0.00 2.87
318 319 2.839486 TCTCAATGCAGACGGTTCTT 57.161 45.000 0.00 0.00 0.00 2.52
319 320 2.027745 ACATCTCAATGCAGACGGTTCT 60.028 45.455 0.00 0.00 36.26 3.01
320 321 2.094894 CACATCTCAATGCAGACGGTTC 59.905 50.000 0.00 0.00 36.26 3.62
321 322 2.079158 CACATCTCAATGCAGACGGTT 58.921 47.619 0.00 0.00 36.26 4.44
322 323 1.730501 CACATCTCAATGCAGACGGT 58.269 50.000 0.00 0.00 36.26 4.83
323 324 0.376152 GCACATCTCAATGCAGACGG 59.624 55.000 0.00 0.00 41.65 4.79
324 325 1.366679 AGCACATCTCAATGCAGACG 58.633 50.000 0.00 0.00 44.59 4.18
325 326 3.439476 AGAAAGCACATCTCAATGCAGAC 59.561 43.478 0.00 0.00 44.59 3.51
326 327 3.439129 CAGAAAGCACATCTCAATGCAGA 59.561 43.478 0.00 0.00 44.59 4.26
327 328 3.759418 CAGAAAGCACATCTCAATGCAG 58.241 45.455 0.00 0.00 44.59 4.41
328 329 2.094906 GCAGAAAGCACATCTCAATGCA 60.095 45.455 0.00 0.00 44.59 3.96
329 330 2.527100 GCAGAAAGCACATCTCAATGC 58.473 47.619 0.00 0.00 44.79 3.56
341 342 1.303155 AGGCTCACAGGCAGAAAGC 60.303 57.895 0.00 0.00 44.19 3.51
342 343 0.250640 ACAGGCTCACAGGCAGAAAG 60.251 55.000 0.00 0.00 44.19 2.62
343 344 0.250467 GACAGGCTCACAGGCAGAAA 60.250 55.000 0.00 0.00 44.19 2.52
344 345 1.372683 GACAGGCTCACAGGCAGAA 59.627 57.895 0.00 0.00 44.19 3.02
345 346 2.935740 CGACAGGCTCACAGGCAGA 61.936 63.158 0.00 0.00 44.19 4.26
346 347 2.433838 CGACAGGCTCACAGGCAG 60.434 66.667 0.00 0.00 44.19 4.85
347 348 4.687215 GCGACAGGCTCACAGGCA 62.687 66.667 0.00 0.00 44.19 4.75
367 368 3.917760 GATCGAGACGGGCAGGGG 61.918 72.222 0.00 0.00 0.00 4.79
368 369 3.144120 CTGATCGAGACGGGCAGGG 62.144 68.421 0.00 0.00 0.00 4.45
369 370 2.415010 CTGATCGAGACGGGCAGG 59.585 66.667 0.00 0.00 0.00 4.85
597 608 1.066573 CGGAAGGAGAATGTCAGTGCT 60.067 52.381 0.00 0.00 0.00 4.40
630 644 7.066284 CACTATAAATGTCAGGGGAAGTTTGAG 59.934 40.741 0.00 0.00 0.00 3.02
694 739 2.434702 GGGTAGGACAACGATGGAGAAT 59.565 50.000 0.00 0.00 0.00 2.40
695 740 1.829222 GGGTAGGACAACGATGGAGAA 59.171 52.381 0.00 0.00 0.00 2.87
698 743 2.024655 ACTAGGGTAGGACAACGATGGA 60.025 50.000 0.00 0.00 0.00 3.41
701 746 3.666345 AGACTAGGGTAGGACAACGAT 57.334 47.619 0.00 0.00 0.00 3.73
706 751 4.792513 CTAGGAAGACTAGGGTAGGACA 57.207 50.000 0.00 0.00 44.50 4.02
755 812 4.698625 AGAACGAGGAGGCCCGGT 62.699 66.667 0.00 0.00 37.58 5.28
769 826 4.202367 GGAGAAGTTGAGGTTGAAGGAGAA 60.202 45.833 0.00 0.00 0.00 2.87
817 874 2.535485 AATGCATCGCGGGTGAAGGA 62.535 55.000 6.13 0.00 0.00 3.36
1065 1141 2.582436 CCCACGCTGTTATCCGGT 59.418 61.111 0.00 0.00 0.00 5.28
1173 1279 1.225376 TTCCGTTGATGTCGGCACAC 61.225 55.000 0.00 0.00 46.49 3.82
1285 1416 1.393539 CGTCATAGTGGCGGTTTTGAG 59.606 52.381 0.00 0.00 42.52 3.02
1287 1418 3.967734 CGTCATAGTGGCGGTTTTG 57.032 52.632 0.00 0.00 42.52 2.44
1335 1466 0.312416 CACCGTCGATGAGGAGATCC 59.688 60.000 6.11 0.00 0.00 3.36
1437 1575 1.300931 GTGCAGCTCGAAGACACCA 60.301 57.895 0.00 0.00 0.00 4.17
1440 1578 1.005748 CTGGTGCAGCTCGAAGACA 60.006 57.895 18.08 0.00 0.00 3.41
1602 1773 2.791158 CGCGCAGACAAACAAAAGAAGT 60.791 45.455 8.75 0.00 0.00 3.01
1642 1813 2.872245 CTCTTCTTTTCTTGTGTCGCCA 59.128 45.455 0.00 0.00 0.00 5.69
1749 1944 4.789075 GCGGCGACCAGCTCGTTA 62.789 66.667 12.98 0.00 44.92 3.18
1893 2094 1.158484 CCGACGACTCCGCTGATAGA 61.158 60.000 0.00 0.00 39.95 1.98
1941 2143 2.749600 AGTCTGCTGATGATCCTCACT 58.250 47.619 0.00 0.00 0.00 3.41
2346 2548 3.749064 ACGTCGGACTCGCTGCAT 61.749 61.111 6.57 0.00 36.13 3.96
2351 2553 1.511464 CTGTACACGTCGGACTCGC 60.511 63.158 6.57 0.00 36.13 5.03
2464 2666 3.088532 GGATTGTGTTCCTGCCATACAA 58.911 45.455 0.00 0.00 35.93 2.41
2493 2695 4.598894 CTCAGCCCCTCATCCGCG 62.599 72.222 0.00 0.00 0.00 6.46
2503 2705 3.775654 CTCGTCACCCCTCAGCCC 61.776 72.222 0.00 0.00 0.00 5.19
2737 2948 1.716581 GTCTGAAGAAGAGCGAACACG 59.283 52.381 0.00 0.00 34.84 4.49
2754 2965 4.996434 GTGCTGCCCGTGCTGTCT 62.996 66.667 0.00 0.00 38.57 3.41
2763 2974 1.973812 GGAAAGAGTGGTGCTGCCC 60.974 63.158 0.00 0.00 36.04 5.36
2768 2979 1.346068 ACTCAGAGGAAAGAGTGGTGC 59.654 52.381 1.53 0.00 43.09 5.01
2860 3107 6.061441 TGTTATGTCATTTGACTGACCTTGT 58.939 36.000 11.67 0.00 43.99 3.16
2925 3176 6.162079 ACCGAGACTTGATGCTATATTCATG 58.838 40.000 0.00 0.00 0.00 3.07
2971 3228 7.064728 GCGTCTTCAATGGTCTAGTCTAAAAAT 59.935 37.037 0.00 0.00 0.00 1.82
2985 3243 1.133253 CACAGCGCGTCTTCAATGG 59.867 57.895 8.43 0.00 0.00 3.16
3000 3258 2.147958 GTGTCAAAATAGACGGGCACA 58.852 47.619 0.00 0.00 41.41 4.57
3001 3259 2.423577 AGTGTCAAAATAGACGGGCAC 58.576 47.619 0.00 0.00 41.41 5.01
3036 3299 5.618056 AATGCCTTCATATACTTGCATCG 57.382 39.130 0.00 0.00 38.40 3.84
3120 4932 5.930135 AGTTCACAATCCTCAGTGTACTTT 58.070 37.500 0.00 0.00 41.56 2.66
3158 4974 1.726853 CCTGTCTAAAAGTCGCAGGG 58.273 55.000 0.00 0.00 42.05 4.45
3160 4976 4.813296 AAAACCTGTCTAAAAGTCGCAG 57.187 40.909 0.00 0.00 0.00 5.18
3192 5008 2.743928 CAAGTCGCAGGGTGCTCC 60.744 66.667 0.00 0.00 42.25 4.70
3193 5009 2.743928 CCAAGTCGCAGGGTGCTC 60.744 66.667 0.00 0.00 42.25 4.26
3194 5010 3.120086 AACCAAGTCGCAGGGTGCT 62.120 57.895 0.00 0.00 42.25 4.40
3195 5011 2.594592 AACCAAGTCGCAGGGTGC 60.595 61.111 0.00 0.00 40.69 5.01
3196 5012 3.343972 CAACCAAGTCGCAGGGTG 58.656 61.111 0.00 0.00 36.06 4.61
3197 5013 0.470766 TTACAACCAAGTCGCAGGGT 59.529 50.000 0.00 0.00 36.19 4.34
3198 5014 0.872388 GTTACAACCAAGTCGCAGGG 59.128 55.000 0.00 0.00 0.00 4.45
3252 5086 8.695284 CAAATAATATAGTGCGAGAGTCAAGAC 58.305 37.037 0.00 0.00 0.00 3.01
3319 5153 6.366061 GTGATTTGCCAAGGTATTTTCTTGTC 59.634 38.462 0.00 0.00 39.78 3.18
3325 5159 5.304101 TGTCAGTGATTTGCCAAGGTATTTT 59.696 36.000 0.00 0.00 0.00 1.82
3335 5169 0.524862 CCTGCTGTCAGTGATTTGCC 59.475 55.000 0.00 0.00 38.66 4.52
3346 5190 1.474879 GACAGTCTCTACCCTGCTGTC 59.525 57.143 7.15 7.15 45.70 3.51
3394 5238 4.081322 ACTTAGCGAAAACTTTCCAGGA 57.919 40.909 0.00 0.00 33.68 3.86
3450 5294 4.039973 ACCTCGTTTCAAAGGTCTATGTCA 59.960 41.667 0.00 0.00 42.28 3.58
3482 5326 4.216257 ACATGTTCACACCATAGTTTGAGC 59.784 41.667 0.00 0.00 34.31 4.26
3483 5327 5.106555 GGACATGTTCACACCATAGTTTGAG 60.107 44.000 0.00 0.00 34.31 3.02
3504 5348 3.869832 GCAGATAACCTTTCTAACCGGAC 59.130 47.826 9.46 0.00 0.00 4.79
3701 5549 3.123804 CAGTATGCTTCGGTACACCATC 58.876 50.000 0.00 0.00 35.14 3.51
3726 5574 0.326264 GTGCAATCACCCTGACCTCT 59.674 55.000 0.00 0.00 37.24 3.69
3727 5575 0.036732 TGTGCAATCACCCTGACCTC 59.963 55.000 0.00 0.00 42.46 3.85
3781 5829 6.211515 GGCATTCCATGATTACTGAATTCAC 58.788 40.000 3.38 0.00 0.00 3.18
3783 5831 5.455392 CGGCATTCCATGATTACTGAATTC 58.545 41.667 0.00 0.00 0.00 2.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.