Multiple sequence alignment - TraesCS7A01G507400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G507400 chr7A 100.000 3977 0 0 1 3977 694332903 694328927 0.000000e+00 7345.0
1 TraesCS7A01G507400 chr7A 84.764 2330 274 41 889 3166 694254455 694252155 0.000000e+00 2261.0
2 TraesCS7A01G507400 chr7A 83.942 2217 300 32 982 3162 694196431 694198627 0.000000e+00 2071.0
3 TraesCS7A01G507400 chr7A 83.107 2137 307 24 989 3099 694375889 694373781 0.000000e+00 1897.0
4 TraesCS7A01G507400 chr7A 82.571 2163 336 26 989 3129 694358199 694356056 0.000000e+00 1868.0
5 TraesCS7A01G507400 chr7A 85.286 734 75 22 3248 3977 315259422 315260126 0.000000e+00 726.0
6 TraesCS7A01G507400 chr7A 84.762 735 78 22 3248 3977 315278387 315279092 0.000000e+00 706.0
7 TraesCS7A01G507400 chr7A 82.976 746 88 24 3237 3977 57868842 57869553 4.330000e-179 638.0
8 TraesCS7A01G507400 chr7A 93.617 47 3 0 3546 3592 714173009 714173055 1.980000e-08 71.3
9 TraesCS7A01G507400 chr7D 97.752 1646 36 1 1038 2683 602673521 602671877 0.000000e+00 2833.0
10 TraesCS7A01G507400 chr7D 86.409 2303 271 21 892 3165 602664555 602662266 0.000000e+00 2481.0
11 TraesCS7A01G507400 chr7D 84.765 2166 296 20 1001 3142 602751494 602749339 0.000000e+00 2141.0
12 TraesCS7A01G507400 chr7D 82.628 2199 333 33 992 3166 602723564 602721391 0.000000e+00 1899.0
13 TraesCS7A01G507400 chr7D 92.273 893 56 10 2 884 602665477 602664588 0.000000e+00 1254.0
14 TraesCS7A01G507400 chr7D 85.013 754 67 30 3237 3977 280603101 280602381 0.000000e+00 725.0
15 TraesCS7A01G507400 chr7D 82.510 749 86 19 3247 3977 611317308 611318029 2.030000e-172 616.0
16 TraesCS7A01G507400 chr7D 81.978 738 75 20 3244 3977 595030172 595030855 1.240000e-159 573.0
17 TraesCS7A01G507400 chr7D 93.789 161 9 1 718 877 602675016 602674856 1.430000e-59 241.0
18 TraesCS7A01G507400 chr7D 86.207 203 25 3 1 200 602680997 602680795 2.410000e-52 217.0
19 TraesCS7A01G507400 chr7D 89.655 145 8 3 523 661 602675167 602675024 1.140000e-40 178.0
20 TraesCS7A01G507400 chr7D 90.000 90 5 2 220 309 602678651 602678566 3.250000e-21 113.0
21 TraesCS7A01G507400 chr7B 87.352 2198 249 16 989 3166 682842177 682844365 0.000000e+00 2492.0
22 TraesCS7A01G507400 chr7B 85.282 2215 277 27 982 3162 683105733 683107932 0.000000e+00 2239.0
23 TraesCS7A01G507400 chr7B 84.177 2174 311 18 989 3142 683243797 683241637 0.000000e+00 2078.0
24 TraesCS7A01G507400 chr7B 82.963 2160 333 24 989 3129 683231490 683229347 0.000000e+00 1917.0
25 TraesCS7A01G507400 chr7B 89.367 1326 129 10 1850 3166 683168444 683167122 0.000000e+00 1657.0
26 TraesCS7A01G507400 chr7B 85.812 1318 174 9 1861 3166 683151378 683152694 0.000000e+00 1386.0
27 TraesCS7A01G507400 chr7B 81.477 745 94 19 3239 3977 137556953 137557659 4.460000e-159 571.0
28 TraesCS7A01G507400 chr7B 78.728 503 46 33 200 690 683169917 683169464 3.030000e-71 279.0
29 TraesCS7A01G507400 chr7B 93.333 45 2 1 3549 3592 581324806 581324762 9.230000e-07 65.8
30 TraesCS7A01G507400 chr4B 78.770 2082 336 61 989 3011 28536568 28538602 0.000000e+00 1299.0
31 TraesCS7A01G507400 chr4B 84.232 742 48 28 3244 3977 348949896 348949216 0.000000e+00 658.0
32 TraesCS7A01G507400 chr4B 93.333 45 1 2 3549 3592 348949700 348949657 9.230000e-07 65.8
33 TraesCS7A01G507400 chr4D 86.450 738 50 24 3245 3977 64360660 64359968 0.000000e+00 763.0
34 TraesCS7A01G507400 chr4D 85.014 734 77 16 3246 3976 40221058 40220355 0.000000e+00 715.0
35 TraesCS7A01G507400 chr4D 88.620 413 42 5 3568 3977 461589933 461590343 7.680000e-137 497.0
36 TraesCS7A01G507400 chr3D 84.668 737 81 17 3245 3977 435485782 435486490 0.000000e+00 706.0
37 TraesCS7A01G507400 chr1A 83.131 741 92 10 3243 3977 479036993 479036280 0.000000e+00 645.0
38 TraesCS7A01G507400 chr1A 91.667 48 3 1 3546 3592 336243499 336243546 9.230000e-07 65.8
39 TraesCS7A01G507400 chr5B 83.311 737 84 25 3247 3977 330414477 330415180 0.000000e+00 643.0
40 TraesCS7A01G507400 chr5B 93.333 45 1 2 3549 3592 129348596 129348553 9.230000e-07 65.8
41 TraesCS7A01G507400 chr5D 78.204 835 151 18 990 1806 107553949 107553128 4.590000e-139 505.0
42 TraesCS7A01G507400 chrUn 89.109 404 36 6 3577 3977 48195828 48195430 2.760000e-136 496.0
43 TraesCS7A01G507400 chr4A 89.109 404 36 6 3577 3977 605385865 605386263 2.760000e-136 496.0
44 TraesCS7A01G507400 chr4A 87.379 309 29 5 3246 3547 384393575 384393880 2.940000e-91 346.0
45 TraesCS7A01G507400 chr4A 86.622 299 30 5 3247 3540 57106854 57107147 4.960000e-84 322.0
46 TraesCS7A01G507400 chr2B 95.455 44 2 0 3549 3592 34346905 34346862 1.980000e-08 71.3
47 TraesCS7A01G507400 chr1B 95.455 44 2 0 3549 3592 669339239 669339196 1.980000e-08 71.3
48 TraesCS7A01G507400 chr1B 91.489 47 4 0 3546 3592 686748528 686748574 9.230000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G507400 chr7A 694328927 694332903 3976 True 7345.0 7345 100.0000 1 3977 1 chr7A.!!$R2 3976
1 TraesCS7A01G507400 chr7A 694252155 694254455 2300 True 2261.0 2261 84.7640 889 3166 1 chr7A.!!$R1 2277
2 TraesCS7A01G507400 chr7A 694196431 694198627 2196 False 2071.0 2071 83.9420 982 3162 1 chr7A.!!$F4 2180
3 TraesCS7A01G507400 chr7A 694373781 694375889 2108 True 1897.0 1897 83.1070 989 3099 1 chr7A.!!$R4 2110
4 TraesCS7A01G507400 chr7A 694356056 694358199 2143 True 1868.0 1868 82.5710 989 3129 1 chr7A.!!$R3 2140
5 TraesCS7A01G507400 chr7A 315259422 315260126 704 False 726.0 726 85.2860 3248 3977 1 chr7A.!!$F2 729
6 TraesCS7A01G507400 chr7A 315278387 315279092 705 False 706.0 706 84.7620 3248 3977 1 chr7A.!!$F3 729
7 TraesCS7A01G507400 chr7A 57868842 57869553 711 False 638.0 638 82.9760 3237 3977 1 chr7A.!!$F1 740
8 TraesCS7A01G507400 chr7D 602749339 602751494 2155 True 2141.0 2141 84.7650 1001 3142 1 chr7D.!!$R3 2141
9 TraesCS7A01G507400 chr7D 602721391 602723564 2173 True 1899.0 1899 82.6280 992 3166 1 chr7D.!!$R2 2174
10 TraesCS7A01G507400 chr7D 602662266 602665477 3211 True 1867.5 2481 89.3410 2 3165 2 chr7D.!!$R4 3163
11 TraesCS7A01G507400 chr7D 280602381 280603101 720 True 725.0 725 85.0130 3237 3977 1 chr7D.!!$R1 740
12 TraesCS7A01G507400 chr7D 602671877 602680997 9120 True 716.4 2833 91.4806 1 2683 5 chr7D.!!$R5 2682
13 TraesCS7A01G507400 chr7D 611317308 611318029 721 False 616.0 616 82.5100 3247 3977 1 chr7D.!!$F2 730
14 TraesCS7A01G507400 chr7D 595030172 595030855 683 False 573.0 573 81.9780 3244 3977 1 chr7D.!!$F1 733
15 TraesCS7A01G507400 chr7B 682842177 682844365 2188 False 2492.0 2492 87.3520 989 3166 1 chr7B.!!$F2 2177
16 TraesCS7A01G507400 chr7B 683105733 683107932 2199 False 2239.0 2239 85.2820 982 3162 1 chr7B.!!$F3 2180
17 TraesCS7A01G507400 chr7B 683241637 683243797 2160 True 2078.0 2078 84.1770 989 3142 1 chr7B.!!$R3 2153
18 TraesCS7A01G507400 chr7B 683229347 683231490 2143 True 1917.0 1917 82.9630 989 3129 1 chr7B.!!$R2 2140
19 TraesCS7A01G507400 chr7B 683151378 683152694 1316 False 1386.0 1386 85.8120 1861 3166 1 chr7B.!!$F4 1305
20 TraesCS7A01G507400 chr7B 683167122 683169917 2795 True 968.0 1657 84.0475 200 3166 2 chr7B.!!$R4 2966
21 TraesCS7A01G507400 chr7B 137556953 137557659 706 False 571.0 571 81.4770 3239 3977 1 chr7B.!!$F1 738
22 TraesCS7A01G507400 chr4B 28536568 28538602 2034 False 1299.0 1299 78.7700 989 3011 1 chr4B.!!$F1 2022
23 TraesCS7A01G507400 chr4B 348949216 348949896 680 True 361.9 658 88.7825 3244 3977 2 chr4B.!!$R1 733
24 TraesCS7A01G507400 chr4D 64359968 64360660 692 True 763.0 763 86.4500 3245 3977 1 chr4D.!!$R2 732
25 TraesCS7A01G507400 chr4D 40220355 40221058 703 True 715.0 715 85.0140 3246 3976 1 chr4D.!!$R1 730
26 TraesCS7A01G507400 chr3D 435485782 435486490 708 False 706.0 706 84.6680 3245 3977 1 chr3D.!!$F1 732
27 TraesCS7A01G507400 chr1A 479036280 479036993 713 True 645.0 645 83.1310 3243 3977 1 chr1A.!!$R1 734
28 TraesCS7A01G507400 chr5B 330414477 330415180 703 False 643.0 643 83.3110 3247 3977 1 chr5B.!!$F1 730
29 TraesCS7A01G507400 chr5D 107553128 107553949 821 True 505.0 505 78.2040 990 1806 1 chr5D.!!$R1 816

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
958 6322 0.392461 TTATGGTGCTCACGCTTCCC 60.392 55.000 0.0 0.0 36.97 3.97 F
978 6342 1.638589 CCCTTCCCAAATACCACCAGA 59.361 52.381 0.0 0.0 0.00 3.86 F
2647 9321 1.068250 GGCTACATCGACCCTGAGC 59.932 63.158 0.0 0.0 0.00 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2376 9050 0.530744 CGTTGCTGTAGAGGTGCCTA 59.469 55.000 0.0 0.0 0.00 3.93 R
2730 9404 1.032657 CAGAGGTCTCGATCACCGGT 61.033 60.000 0.0 0.0 39.13 5.28 R
3666 10406 3.703286 AGTTTGCCGTGGTTAGTTTTC 57.297 42.857 0.0 0.0 0.00 2.29 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 8.837099 ATGATGGAAATATTTGGACCAAAGTA 57.163 30.769 23.45 15.75 36.76 2.24
181 186 0.744414 ATGTCTAGCCGCGCAAATGT 60.744 50.000 8.75 0.00 0.00 2.71
183 188 1.375396 TCTAGCCGCGCAAATGTGT 60.375 52.632 8.75 0.00 0.00 3.72
197 202 3.443045 GTGTGGGCCATTCCGCTG 61.443 66.667 10.70 0.00 38.11 5.18
333 2462 2.090400 TGATCACAACTGAGCAGCTC 57.910 50.000 16.21 16.21 37.91 4.09
353 3990 7.333174 GCAGCTCCTCTTTATATAGATCCAAAC 59.667 40.741 0.00 0.00 0.00 2.93
382 4019 1.026718 CATTCCTGGCCCAACGACTC 61.027 60.000 0.00 0.00 0.00 3.36
455 4093 0.730840 GCGTAAATTTCGGGTCCAGG 59.269 55.000 0.00 0.00 0.00 4.45
463 4101 3.906720 TTTCGGGTCCAGGATAAGAAG 57.093 47.619 0.00 0.00 0.00 2.85
464 4102 1.789523 TCGGGTCCAGGATAAGAAGG 58.210 55.000 0.00 0.00 0.00 3.46
587 5906 6.707440 TTTCTGTGGAGAACTTTGCATTTA 57.293 33.333 0.00 0.00 37.97 1.40
634 5959 7.786030 TCTAGAACATCCCTCAAACTTCTATG 58.214 38.462 0.00 0.00 0.00 2.23
745 6073 3.430218 CAGTTTAGAGAAGCCACTTGTCG 59.570 47.826 0.00 0.00 38.54 4.35
778 6106 0.602905 CTTTCTTTCCGCCGGTGTCT 60.603 55.000 15.14 0.00 0.00 3.41
783 6111 3.876589 TTCCGCCGGTGTCTTCTGC 62.877 63.158 15.14 0.00 0.00 4.26
811 6139 6.098409 CGGGTATATTAGGGCTCTAATCATGT 59.902 42.308 22.19 9.79 43.12 3.21
855 6183 3.818773 CAGTTACGGTTGGGAAAACTCAT 59.181 43.478 0.00 0.00 0.00 2.90
877 6206 0.392998 GGCTCCATTCTTCCAAGCGA 60.393 55.000 0.00 0.00 33.77 4.93
884 6213 2.386661 TTCTTCCAAGCGAGCCTTAG 57.613 50.000 0.00 0.00 31.00 2.18
885 6214 1.557099 TCTTCCAAGCGAGCCTTAGA 58.443 50.000 0.00 0.00 31.00 2.10
886 6215 1.204941 TCTTCCAAGCGAGCCTTAGAC 59.795 52.381 0.00 0.00 31.00 2.59
887 6216 1.205893 CTTCCAAGCGAGCCTTAGACT 59.794 52.381 0.00 0.00 31.00 3.24
958 6322 0.392461 TTATGGTGCTCACGCTTCCC 60.392 55.000 0.00 0.00 36.97 3.97
978 6342 1.638589 CCCTTCCCAAATACCACCAGA 59.361 52.381 0.00 0.00 0.00 3.86
1089 7605 2.103143 CGCTGGGTACTCTCGCTG 59.897 66.667 0.00 0.00 0.00 5.18
1525 8079 1.768275 ACAGGAACCATATCGGCATCA 59.232 47.619 0.00 0.00 39.03 3.07
1574 8128 3.626924 GGACACGACCACCTGGCT 61.627 66.667 0.00 0.00 39.32 4.75
1791 8361 2.868044 GCATCGGATACTGTCATGGTCC 60.868 54.545 0.00 0.00 0.00 4.46
2001 8673 4.645956 CAAATGATGACAGCGAAGAAGAC 58.354 43.478 0.00 0.00 0.00 3.01
2172 8845 2.280119 GTCACACTCGCAGGTGCA 60.280 61.111 2.33 0.00 42.21 4.57
2376 9050 2.136878 CACGGAGGGCAGCCTAGAT 61.137 63.158 12.43 0.00 0.00 1.98
2647 9321 1.068250 GGCTACATCGACCCTGAGC 59.932 63.158 0.00 0.00 0.00 4.26
2746 9420 2.113433 CGACCGGTGATCGAGACCT 61.113 63.158 14.63 0.00 42.25 3.85
3007 9682 1.001641 GGGCTGCACAGGATCTTGT 60.002 57.895 4.34 4.34 0.00 3.16
3015 9699 3.297830 CACAGGATCTTGTGTCGTACA 57.702 47.619 25.49 0.00 42.68 2.90
3061 9746 0.675083 TCCGGTTGTGTTCGCTCTTA 59.325 50.000 0.00 0.00 0.00 2.10
3064 9749 2.482721 CCGGTTGTGTTCGCTCTTATTT 59.517 45.455 0.00 0.00 0.00 1.40
3071 9756 4.759693 TGTGTTCGCTCTTATTTGGTCAAT 59.240 37.500 0.00 0.00 0.00 2.57
3092 9777 1.569493 CGGCAACACCACTCTTTCG 59.431 57.895 0.00 0.00 39.03 3.46
3095 9780 1.295792 GCAACACCACTCTTTCGTCA 58.704 50.000 0.00 0.00 0.00 4.35
3119 9804 4.717629 TCCTCGACCGCGTTGCTG 62.718 66.667 4.92 0.00 38.98 4.41
3129 9814 2.259818 CGTTGCTGCGAGACTCCT 59.740 61.111 0.00 0.00 0.00 3.69
3131 9816 0.109272 CGTTGCTGCGAGACTCCTAA 60.109 55.000 0.00 0.00 0.00 2.69
3132 9817 1.668919 CGTTGCTGCGAGACTCCTAAA 60.669 52.381 0.00 0.00 0.00 1.85
3133 9818 2.622436 GTTGCTGCGAGACTCCTAAAT 58.378 47.619 0.00 0.00 0.00 1.40
3134 9819 2.586258 TGCTGCGAGACTCCTAAATC 57.414 50.000 0.00 0.00 0.00 2.17
3135 9820 2.103373 TGCTGCGAGACTCCTAAATCT 58.897 47.619 0.00 0.00 0.00 2.40
3137 9822 3.316588 TGCTGCGAGACTCCTAAATCTAG 59.683 47.826 0.00 0.00 0.00 2.43
3138 9823 3.855524 GCTGCGAGACTCCTAAATCTAGC 60.856 52.174 0.00 0.00 42.11 3.42
3140 9825 4.715713 TGCGAGACTCCTAAATCTAGCTA 58.284 43.478 7.66 0.00 42.22 3.32
3141 9826 4.757657 TGCGAGACTCCTAAATCTAGCTAG 59.242 45.833 15.01 15.01 42.22 3.42
3156 9845 9.732130 AAATCTAGCTAGTAATTGATTCATCCC 57.268 33.333 20.10 0.00 0.00 3.85
3168 9857 6.817765 TTGATTCATCCCGATTTATAAGGC 57.182 37.500 0.00 0.00 0.00 4.35
3169 9858 6.126863 TGATTCATCCCGATTTATAAGGCT 57.873 37.500 0.00 0.00 0.00 4.58
3170 9859 6.173339 TGATTCATCCCGATTTATAAGGCTC 58.827 40.000 0.00 0.00 0.00 4.70
3171 9860 5.825593 TTCATCCCGATTTATAAGGCTCT 57.174 39.130 0.00 0.00 0.00 4.09
3172 9861 5.825593 TCATCCCGATTTATAAGGCTCTT 57.174 39.130 0.00 0.00 0.00 2.85
3173 9862 6.928348 TCATCCCGATTTATAAGGCTCTTA 57.072 37.500 0.00 0.00 0.00 2.10
3174 9863 7.496346 TCATCCCGATTTATAAGGCTCTTAT 57.504 36.000 10.89 10.89 0.00 1.73
3175 9864 7.918076 TCATCCCGATTTATAAGGCTCTTATT 58.082 34.615 11.23 0.00 0.00 1.40
3176 9865 8.383175 TCATCCCGATTTATAAGGCTCTTATTT 58.617 33.333 11.23 0.99 0.00 1.40
3177 9866 9.014297 CATCCCGATTTATAAGGCTCTTATTTT 57.986 33.333 11.23 0.72 0.00 1.82
3179 9868 9.720769 TCCCGATTTATAAGGCTCTTATTTTAG 57.279 33.333 11.23 3.29 0.00 1.85
3180 9869 9.720769 CCCGATTTATAAGGCTCTTATTTTAGA 57.279 33.333 11.23 0.00 0.00 2.10
3189 9878 8.614469 AAGGCTCTTATTTTAGATGTAGCATC 57.386 34.615 1.18 1.18 0.00 3.91
3190 9879 6.870965 AGGCTCTTATTTTAGATGTAGCATCG 59.129 38.462 3.81 0.00 0.00 3.84
3191 9880 6.647067 GGCTCTTATTTTAGATGTAGCATCGT 59.353 38.462 3.81 0.00 0.00 3.73
3192 9881 7.148722 GGCTCTTATTTTAGATGTAGCATCGTC 60.149 40.741 3.81 0.00 0.00 4.20
3193 9882 7.382488 GCTCTTATTTTAGATGTAGCATCGTCA 59.618 37.037 3.81 0.00 0.00 4.35
3194 9883 9.416794 CTCTTATTTTAGATGTAGCATCGTCAT 57.583 33.333 3.81 0.00 0.00 3.06
3195 9884 9.764363 TCTTATTTTAGATGTAGCATCGTCATT 57.236 29.630 3.81 0.00 0.00 2.57
3199 9888 8.575565 TTTTAGATGTAGCATCGTCATTACTC 57.424 34.615 3.81 0.00 0.00 2.59
3200 9889 7.511959 TTAGATGTAGCATCGTCATTACTCT 57.488 36.000 3.81 0.00 0.00 3.24
3201 9890 5.767269 AGATGTAGCATCGTCATTACTCTG 58.233 41.667 3.81 0.00 0.00 3.35
3202 9891 4.307443 TGTAGCATCGTCATTACTCTGG 57.693 45.455 0.00 0.00 0.00 3.86
3203 9892 3.951680 TGTAGCATCGTCATTACTCTGGA 59.048 43.478 0.00 0.00 0.00 3.86
3204 9893 4.584743 TGTAGCATCGTCATTACTCTGGAT 59.415 41.667 0.00 0.00 0.00 3.41
3205 9894 4.679373 AGCATCGTCATTACTCTGGATT 57.321 40.909 0.00 0.00 0.00 3.01
3206 9895 5.028549 AGCATCGTCATTACTCTGGATTT 57.971 39.130 0.00 0.00 0.00 2.17
3207 9896 5.431765 AGCATCGTCATTACTCTGGATTTT 58.568 37.500 0.00 0.00 0.00 1.82
3208 9897 5.295292 AGCATCGTCATTACTCTGGATTTTG 59.705 40.000 0.00 0.00 0.00 2.44
3209 9898 5.065218 GCATCGTCATTACTCTGGATTTTGT 59.935 40.000 0.00 0.00 0.00 2.83
3210 9899 6.403636 GCATCGTCATTACTCTGGATTTTGTT 60.404 38.462 0.00 0.00 0.00 2.83
3211 9900 6.721571 TCGTCATTACTCTGGATTTTGTTC 57.278 37.500 0.00 0.00 0.00 3.18
3212 9901 6.464222 TCGTCATTACTCTGGATTTTGTTCT 58.536 36.000 0.00 0.00 0.00 3.01
3213 9902 6.934645 TCGTCATTACTCTGGATTTTGTTCTT 59.065 34.615 0.00 0.00 0.00 2.52
3214 9903 7.444183 TCGTCATTACTCTGGATTTTGTTCTTT 59.556 33.333 0.00 0.00 0.00 2.52
3215 9904 7.746475 CGTCATTACTCTGGATTTTGTTCTTTC 59.254 37.037 0.00 0.00 0.00 2.62
3216 9905 8.023706 GTCATTACTCTGGATTTTGTTCTTTCC 58.976 37.037 0.00 0.00 0.00 3.13
3217 9906 7.723616 TCATTACTCTGGATTTTGTTCTTTCCA 59.276 33.333 0.00 0.00 36.81 3.53
3218 9907 8.526147 CATTACTCTGGATTTTGTTCTTTCCAT 58.474 33.333 0.00 0.00 37.61 3.41
3219 9908 9.753674 ATTACTCTGGATTTTGTTCTTTCCATA 57.246 29.630 0.00 0.00 37.61 2.74
3220 9909 9.753674 TTACTCTGGATTTTGTTCTTTCCATAT 57.246 29.630 0.00 0.00 37.61 1.78
3221 9910 8.059798 ACTCTGGATTTTGTTCTTTCCATATG 57.940 34.615 0.00 0.00 37.61 1.78
3222 9911 7.123247 ACTCTGGATTTTGTTCTTTCCATATGG 59.877 37.037 16.25 16.25 37.61 2.74
3223 9912 6.380846 TCTGGATTTTGTTCTTTCCATATGGG 59.619 38.462 21.78 6.03 37.61 4.00
3224 9913 5.424895 TGGATTTTGTTCTTTCCATATGGGG 59.575 40.000 21.78 12.02 33.40 4.96
3225 9914 4.817318 TTTTGTTCTTTCCATATGGGGC 57.183 40.909 21.78 6.55 37.22 5.80
3226 9915 3.464720 TTGTTCTTTCCATATGGGGCA 57.535 42.857 21.78 8.85 37.22 5.36
3227 9916 3.017048 TGTTCTTTCCATATGGGGCAG 57.983 47.619 21.78 14.24 37.22 4.85
3228 9917 2.310538 GTTCTTTCCATATGGGGCAGG 58.689 52.381 21.78 7.04 37.22 4.85
3229 9918 0.185901 TCTTTCCATATGGGGCAGGC 59.814 55.000 21.78 0.00 37.22 4.85
3230 9919 0.829182 CTTTCCATATGGGGCAGGCC 60.829 60.000 21.78 3.77 37.22 5.19
3231 9920 1.295915 TTTCCATATGGGGCAGGCCT 61.296 55.000 21.78 0.00 37.22 5.19
3232 9921 0.402713 TTCCATATGGGGCAGGCCTA 60.403 55.000 21.78 7.39 37.22 3.93
3233 9922 0.842030 TCCATATGGGGCAGGCCTAG 60.842 60.000 21.78 0.47 37.22 3.02
3234 9923 1.001641 CATATGGGGCAGGCCTAGC 60.002 63.158 13.81 12.10 36.10 3.42
3235 9924 1.151721 ATATGGGGCAGGCCTAGCT 60.152 57.895 21.48 8.77 36.10 3.32
3236 9925 0.773700 ATATGGGGCAGGCCTAGCTT 60.774 55.000 21.48 10.48 36.10 3.74
3237 9926 0.993509 TATGGGGCAGGCCTAGCTTT 60.994 55.000 21.48 10.22 36.10 3.51
3238 9927 1.878799 ATGGGGCAGGCCTAGCTTTT 61.879 55.000 21.48 6.81 36.10 2.27
3239 9928 1.305297 GGGGCAGGCCTAGCTTTTT 60.305 57.895 21.48 0.00 36.10 1.94
3264 9953 2.091541 ACCCAAATGATAAGTGCCACG 58.908 47.619 0.00 0.00 0.00 4.94
3279 9968 4.750460 ACGCGTGTGACATGAAGT 57.250 50.000 12.93 4.80 0.00 3.01
3297 9986 3.168035 AGTAACATGGTCCAAATGCCA 57.832 42.857 0.00 0.00 39.33 4.92
3357 10062 9.122613 GACATCAGCAGAATCTTTTTAGTTTTC 57.877 33.333 0.00 0.00 0.00 2.29
3478 10198 8.156820 TCCCATATTGATATGTTTCGATGACTT 58.843 33.333 9.47 0.00 38.73 3.01
3504 10235 2.070783 GCCAAAAGTTGCCATGATGTG 58.929 47.619 0.00 0.00 0.00 3.21
3517 10248 4.067192 CCATGATGTGACACTGAAGTTGA 58.933 43.478 7.20 0.00 0.00 3.18
3524 10255 6.399639 TGTGACACTGAAGTTGACATAGTA 57.600 37.500 7.20 0.00 0.00 1.82
3525 10256 6.811954 TGTGACACTGAAGTTGACATAGTAA 58.188 36.000 7.20 0.00 0.00 2.24
3547 10279 9.826574 AGTAATTACACTAAAGTTGACACTGAA 57.173 29.630 17.65 0.00 31.60 3.02
3548 10280 9.859692 GTAATTACACTAAAGTTGACACTGAAC 57.140 33.333 10.81 0.00 31.60 3.18
3549 10281 8.732746 AATTACACTAAAGTTGACACTGAACT 57.267 30.769 0.00 0.00 35.08 3.01
3550 10282 8.732746 ATTACACTAAAGTTGACACTGAACTT 57.267 30.769 0.00 0.00 43.88 2.66
3551 10283 6.663944 ACACTAAAGTTGACACTGAACTTC 57.336 37.500 0.00 0.00 41.71 3.01
3552 10284 6.170506 ACACTAAAGTTGACACTGAACTTCA 58.829 36.000 0.00 0.00 41.71 3.02
3553 10285 6.653320 ACACTAAAGTTGACACTGAACTTCAA 59.347 34.615 0.00 0.00 41.71 2.69
3554 10286 7.174253 ACACTAAAGTTGACACTGAACTTCAAA 59.826 33.333 0.00 0.00 41.71 2.69
3555 10287 8.020819 CACTAAAGTTGACACTGAACTTCAAAA 58.979 33.333 0.00 0.00 41.71 2.44
3556 10288 8.021396 ACTAAAGTTGACACTGAACTTCAAAAC 58.979 33.333 0.00 0.00 41.71 2.43
3557 10289 6.575162 AAGTTGACACTGAACTTCAAAACT 57.425 33.333 0.00 0.00 38.97 2.66
3558 10290 7.681939 AAGTTGACACTGAACTTCAAAACTA 57.318 32.000 0.00 0.00 38.97 2.24
3559 10291 7.308782 AGTTGACACTGAACTTCAAAACTAG 57.691 36.000 0.00 0.00 31.21 2.57
3560 10292 7.103641 AGTTGACACTGAACTTCAAAACTAGA 58.896 34.615 0.00 0.00 31.21 2.43
3561 10293 7.770897 AGTTGACACTGAACTTCAAAACTAGAT 59.229 33.333 0.00 0.00 31.21 1.98
3562 10294 7.715265 TGACACTGAACTTCAAAACTAGATC 57.285 36.000 0.00 0.00 0.00 2.75
3563 10295 6.706270 TGACACTGAACTTCAAAACTAGATCC 59.294 38.462 0.00 0.00 0.00 3.36
3564 10296 5.998363 ACACTGAACTTCAAAACTAGATCCC 59.002 40.000 0.00 0.00 0.00 3.85
3565 10297 5.997746 CACTGAACTTCAAAACTAGATCCCA 59.002 40.000 0.00 0.00 0.00 4.37
3566 10298 6.656693 CACTGAACTTCAAAACTAGATCCCAT 59.343 38.462 0.00 0.00 0.00 4.00
3567 10299 7.824289 CACTGAACTTCAAAACTAGATCCCATA 59.176 37.037 0.00 0.00 0.00 2.74
3568 10300 8.552296 ACTGAACTTCAAAACTAGATCCCATAT 58.448 33.333 0.00 0.00 0.00 1.78
3639 10377 8.832521 TGTATTTCAACTACTTTTCACGACAAT 58.167 29.630 0.00 0.00 0.00 2.71
3691 10431 4.759516 ACTAACCACGGCAAACTTAATG 57.240 40.909 0.00 0.00 0.00 1.90
3792 10535 5.811399 TGGCAATTCTAGTATTTTGACCG 57.189 39.130 0.00 0.00 0.00 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
163 167 1.375396 ACATTTGCGCGGCTAGACA 60.375 52.632 8.83 0.00 0.00 3.41
181 186 4.738998 CCAGCGGAATGGCCCACA 62.739 66.667 0.00 0.00 32.48 4.17
183 188 2.143575 TTAACCAGCGGAATGGCCCA 62.144 55.000 0.00 0.00 44.80 5.36
186 191 4.324267 AGTATATTAACCAGCGGAATGGC 58.676 43.478 1.50 0.00 44.80 4.40
255 2384 3.850098 AAGGAACTGGCCCACGCAG 62.850 63.158 0.00 0.00 40.86 5.18
353 3990 2.695147 GGGCCAGGAATGGTCAAATTAG 59.305 50.000 4.39 0.00 34.69 1.73
375 4012 5.408356 AGTGTAGAAATATTGCGAGTCGTT 58.592 37.500 15.08 0.00 0.00 3.85
382 4019 5.107837 CGAGGCTAAGTGTAGAAATATTGCG 60.108 44.000 0.00 0.00 0.00 4.85
438 4075 5.677567 TCTTATCCTGGACCCGAAATTTAC 58.322 41.667 0.00 0.00 0.00 2.01
455 4093 7.011202 GTCATTTAGGAAACGACCCTTCTTATC 59.989 40.741 0.00 0.00 35.30 1.75
463 4101 1.395954 GCGTCATTTAGGAAACGACCC 59.604 52.381 0.00 0.00 37.31 4.46
464 4102 1.060122 CGCGTCATTTAGGAAACGACC 59.940 52.381 0.00 0.00 37.31 4.79
567 5886 5.471456 AGTCTAAATGCAAAGTTCTCCACAG 59.529 40.000 0.00 0.00 0.00 3.66
568 5887 5.376625 AGTCTAAATGCAAAGTTCTCCACA 58.623 37.500 0.00 0.00 0.00 4.17
569 5888 5.948992 AGTCTAAATGCAAAGTTCTCCAC 57.051 39.130 0.00 0.00 0.00 4.02
570 5889 6.959639 AAAGTCTAAATGCAAAGTTCTCCA 57.040 33.333 0.00 0.00 0.00 3.86
587 5906 6.529220 AGATAGCACTTTCACTCAAAAGTCT 58.471 36.000 0.00 3.85 45.36 3.24
634 5959 9.899226 AATACAGAGTCAAAATTTGAAGTAAGC 57.101 29.630 10.27 0.00 42.15 3.09
671 5996 7.955918 ACTTTTCAAATAAGCAAGTGAGGAAT 58.044 30.769 0.00 0.00 0.00 3.01
745 6073 5.220416 CGGAAAGAAAGTCGATGGTTATCAC 60.220 44.000 0.00 0.00 32.67 3.06
778 6106 1.274167 CCTAATATACCCGGCGCAGAA 59.726 52.381 10.83 0.00 0.00 3.02
783 6111 0.175073 GAGCCCTAATATACCCGGCG 59.825 60.000 0.00 0.00 44.56 6.46
855 6183 0.677731 CTTGGAAGAATGGAGCCGCA 60.678 55.000 0.00 0.00 0.00 5.69
877 6206 1.277557 CACCAGCAGAAGTCTAAGGCT 59.722 52.381 0.00 0.00 34.64 4.58
884 6213 1.135859 CATTTCGCACCAGCAGAAGTC 60.136 52.381 0.00 0.00 42.27 3.01
885 6214 0.877071 CATTTCGCACCAGCAGAAGT 59.123 50.000 0.00 0.00 42.27 3.01
886 6215 0.877071 ACATTTCGCACCAGCAGAAG 59.123 50.000 0.00 0.00 42.27 2.85
887 6216 0.874390 GACATTTCGCACCAGCAGAA 59.126 50.000 0.00 0.00 42.27 3.02
958 6322 1.638589 TCTGGTGGTATTTGGGAAGGG 59.361 52.381 0.00 0.00 0.00 3.95
978 6342 2.608261 CGTTGTGTTTGGTGTTTGGTGT 60.608 45.455 0.00 0.00 0.00 4.16
1080 7596 0.318762 GGTTGAAGGACAGCGAGAGT 59.681 55.000 0.00 0.00 0.00 3.24
1089 7605 3.403968 GGAGAAGTTGAGGTTGAAGGAC 58.596 50.000 0.00 0.00 0.00 3.85
1525 8079 1.760613 TGAGTTGAGGGAGTTGACGTT 59.239 47.619 0.00 0.00 0.00 3.99
1574 8128 1.610624 GCGATGTGAGGTTCTTTCCCA 60.611 52.381 0.00 0.00 0.00 4.37
1791 8361 4.424061 TGATTCAAGCGTGGAATTGAAG 57.576 40.909 0.00 0.00 45.66 3.02
2062 8735 2.310233 CGGTCACAAGCTCGTGGTG 61.310 63.158 4.67 3.33 37.50 4.17
2332 9006 0.612174 TCGTAGACAAGCAGGAGCCT 60.612 55.000 0.00 0.00 43.56 4.58
2376 9050 0.530744 CGTTGCTGTAGAGGTGCCTA 59.469 55.000 0.00 0.00 0.00 3.93
2647 9321 3.403057 CCGGCGTGTGTTGACGAG 61.403 66.667 6.01 0.00 42.10 4.18
2730 9404 1.032657 CAGAGGTCTCGATCACCGGT 61.033 60.000 0.00 0.00 39.13 5.28
2746 9420 1.747924 CAGCGTGAAGGATCTCTCAGA 59.252 52.381 0.00 0.00 0.00 3.27
2924 9599 3.640407 AGGACGTGCATGGCCTGT 61.640 61.111 33.22 10.04 0.00 4.00
2949 9624 2.898840 CGGTAGCCTCGCCTCGTA 60.899 66.667 0.00 0.00 0.00 3.43
2974 9649 1.200760 AGCCCTGTACATGTGCCTCA 61.201 55.000 9.11 1.93 0.00 3.86
2976 9651 1.300963 CAGCCCTGTACATGTGCCT 59.699 57.895 9.11 0.00 0.00 4.75
3007 9682 1.538512 CGGAGAAAGACCTGTACGACA 59.461 52.381 0.00 0.00 0.00 4.35
3015 9699 1.270358 GCTGTCAACGGAGAAAGACCT 60.270 52.381 1.16 0.00 0.00 3.85
3071 9756 0.470766 AAAGAGTGGTGTTGCCGGTA 59.529 50.000 1.90 0.00 41.21 4.02
3119 9804 4.758165 ACTAGCTAGATTTAGGAGTCTCGC 59.242 45.833 27.45 0.00 34.45 5.03
3131 9816 8.037758 CGGGATGAATCAATTACTAGCTAGATT 58.962 37.037 27.45 14.63 0.00 2.40
3132 9817 7.397476 TCGGGATGAATCAATTACTAGCTAGAT 59.603 37.037 27.45 13.50 0.00 1.98
3133 9818 6.719829 TCGGGATGAATCAATTACTAGCTAGA 59.280 38.462 27.45 6.16 0.00 2.43
3134 9819 6.925211 TCGGGATGAATCAATTACTAGCTAG 58.075 40.000 19.44 19.44 0.00 3.42
3135 9820 6.911250 TCGGGATGAATCAATTACTAGCTA 57.089 37.500 0.00 0.00 0.00 3.32
3137 9822 7.440523 AAATCGGGATGAATCAATTACTAGC 57.559 36.000 0.00 0.00 0.00 3.42
3166 9855 6.647067 ACGATGCTACATCTAAAATAAGAGCC 59.353 38.462 6.06 0.00 0.00 4.70
3167 9856 7.382488 TGACGATGCTACATCTAAAATAAGAGC 59.618 37.037 6.06 0.00 0.00 4.09
3168 9857 8.803201 TGACGATGCTACATCTAAAATAAGAG 57.197 34.615 6.06 0.00 0.00 2.85
3169 9858 9.764363 AATGACGATGCTACATCTAAAATAAGA 57.236 29.630 6.06 0.00 0.00 2.10
3173 9862 9.197694 GAGTAATGACGATGCTACATCTAAAAT 57.802 33.333 6.06 0.00 0.00 1.82
3174 9863 8.414003 AGAGTAATGACGATGCTACATCTAAAA 58.586 33.333 6.06 0.00 0.00 1.52
3175 9864 7.862873 CAGAGTAATGACGATGCTACATCTAAA 59.137 37.037 6.06 0.00 0.00 1.85
3176 9865 7.363431 CAGAGTAATGACGATGCTACATCTAA 58.637 38.462 6.06 0.00 0.00 2.10
3177 9866 6.072452 CCAGAGTAATGACGATGCTACATCTA 60.072 42.308 6.06 0.00 0.00 1.98
3178 9867 5.278709 CCAGAGTAATGACGATGCTACATCT 60.279 44.000 6.06 0.00 0.00 2.90
3179 9868 4.920340 CCAGAGTAATGACGATGCTACATC 59.080 45.833 0.00 0.00 0.00 3.06
3180 9869 4.584743 TCCAGAGTAATGACGATGCTACAT 59.415 41.667 0.00 0.00 0.00 2.29
3181 9870 3.951680 TCCAGAGTAATGACGATGCTACA 59.048 43.478 0.00 0.00 0.00 2.74
3182 9871 4.569761 TCCAGAGTAATGACGATGCTAC 57.430 45.455 0.00 0.00 0.00 3.58
3183 9872 5.791336 AATCCAGAGTAATGACGATGCTA 57.209 39.130 0.00 0.00 0.00 3.49
3184 9873 4.679373 AATCCAGAGTAATGACGATGCT 57.321 40.909 0.00 0.00 0.00 3.79
3185 9874 5.065218 ACAAAATCCAGAGTAATGACGATGC 59.935 40.000 0.00 0.00 0.00 3.91
3186 9875 6.668541 ACAAAATCCAGAGTAATGACGATG 57.331 37.500 0.00 0.00 0.00 3.84
3187 9876 7.106239 AGAACAAAATCCAGAGTAATGACGAT 58.894 34.615 0.00 0.00 0.00 3.73
3188 9877 6.464222 AGAACAAAATCCAGAGTAATGACGA 58.536 36.000 0.00 0.00 0.00 4.20
3189 9878 6.727824 AGAACAAAATCCAGAGTAATGACG 57.272 37.500 0.00 0.00 0.00 4.35
3190 9879 8.023706 GGAAAGAACAAAATCCAGAGTAATGAC 58.976 37.037 0.00 0.00 32.08 3.06
3191 9880 7.723616 TGGAAAGAACAAAATCCAGAGTAATGA 59.276 33.333 0.00 0.00 37.05 2.57
3192 9881 7.885297 TGGAAAGAACAAAATCCAGAGTAATG 58.115 34.615 0.00 0.00 37.05 1.90
3193 9882 8.655935 ATGGAAAGAACAAAATCCAGAGTAAT 57.344 30.769 0.00 0.00 44.63 1.89
3194 9883 9.753674 ATATGGAAAGAACAAAATCCAGAGTAA 57.246 29.630 0.00 0.00 44.63 2.24
3195 9884 9.177608 CATATGGAAAGAACAAAATCCAGAGTA 57.822 33.333 0.00 0.00 44.63 2.59
3196 9885 7.123247 CCATATGGAAAGAACAAAATCCAGAGT 59.877 37.037 17.49 0.00 44.63 3.24
3197 9886 7.417116 CCCATATGGAAAGAACAAAATCCAGAG 60.417 40.741 24.00 0.00 44.63 3.35
3198 9887 6.380846 CCCATATGGAAAGAACAAAATCCAGA 59.619 38.462 24.00 0.00 44.63 3.86
3199 9888 6.407299 CCCCATATGGAAAGAACAAAATCCAG 60.407 42.308 24.00 0.00 44.63 3.86
3200 9889 5.424895 CCCCATATGGAAAGAACAAAATCCA 59.575 40.000 24.00 0.00 45.42 3.41
3201 9890 5.684813 GCCCCATATGGAAAGAACAAAATCC 60.685 44.000 24.00 0.00 37.39 3.01
3202 9891 5.104982 TGCCCCATATGGAAAGAACAAAATC 60.105 40.000 24.00 0.00 37.39 2.17
3203 9892 4.782156 TGCCCCATATGGAAAGAACAAAAT 59.218 37.500 24.00 0.00 37.39 1.82
3204 9893 4.163427 TGCCCCATATGGAAAGAACAAAA 58.837 39.130 24.00 0.00 37.39 2.44
3205 9894 3.768757 CTGCCCCATATGGAAAGAACAAA 59.231 43.478 24.00 0.00 37.39 2.83
3206 9895 3.364549 CTGCCCCATATGGAAAGAACAA 58.635 45.455 24.00 0.00 37.39 2.83
3207 9896 2.358090 CCTGCCCCATATGGAAAGAACA 60.358 50.000 24.00 10.08 37.39 3.18
3208 9897 2.310538 CCTGCCCCATATGGAAAGAAC 58.689 52.381 24.00 6.07 37.39 3.01
3209 9898 1.411501 GCCTGCCCCATATGGAAAGAA 60.412 52.381 24.00 5.16 37.39 2.52
3210 9899 0.185901 GCCTGCCCCATATGGAAAGA 59.814 55.000 24.00 3.13 37.39 2.52
3211 9900 0.829182 GGCCTGCCCCATATGGAAAG 60.829 60.000 24.00 15.68 37.39 2.62
3212 9901 1.232792 GGCCTGCCCCATATGGAAA 59.767 57.895 24.00 7.04 37.39 3.13
3213 9902 0.402713 TAGGCCTGCCCCATATGGAA 60.403 55.000 24.00 7.40 37.39 3.53
3214 9903 0.842030 CTAGGCCTGCCCCATATGGA 60.842 60.000 24.00 2.08 37.39 3.41
3215 9904 1.687612 CTAGGCCTGCCCCATATGG 59.312 63.158 17.99 15.41 36.58 2.74
3216 9905 1.001641 GCTAGGCCTGCCCCATATG 60.002 63.158 17.99 0.00 36.58 1.78
3217 9906 0.773700 AAGCTAGGCCTGCCCCATAT 60.774 55.000 17.99 0.00 36.58 1.78
3218 9907 0.993509 AAAGCTAGGCCTGCCCCATA 60.994 55.000 17.99 0.00 36.58 2.74
3219 9908 1.878799 AAAAGCTAGGCCTGCCCCAT 61.879 55.000 17.99 0.00 36.58 4.00
3220 9909 2.092904 AAAAAGCTAGGCCTGCCCCA 62.093 55.000 17.99 0.00 36.58 4.96
3221 9910 1.305297 AAAAAGCTAGGCCTGCCCC 60.305 57.895 17.99 0.04 36.58 5.80
3222 9911 4.442038 AAAAAGCTAGGCCTGCCC 57.558 55.556 17.99 2.92 36.58 5.36
3239 9928 6.459923 GTGGCACTTATCATTTGGGTAAAAA 58.540 36.000 11.13 0.00 0.00 1.94
3240 9929 5.336055 CGTGGCACTTATCATTTGGGTAAAA 60.336 40.000 16.72 0.00 0.00 1.52
3241 9930 4.156922 CGTGGCACTTATCATTTGGGTAAA 59.843 41.667 16.72 0.00 0.00 2.01
3264 9953 3.424829 CCATGTTACTTCATGTCACACGC 60.425 47.826 0.00 0.00 42.29 5.34
3279 9968 6.805016 AATAATGGCATTTGGACCATGTTA 57.195 33.333 19.21 0.00 46.04 2.41
3404 10112 7.812648 AGACGGATTTAATGATGAAAACGAAA 58.187 30.769 8.95 0.00 0.00 3.46
3504 10235 9.419297 TGTAATTACTATGTCAACTTCAGTGTC 57.581 33.333 16.33 0.00 0.00 3.67
3524 10255 8.732746 AGTTCAGTGTCAACTTTAGTGTAATT 57.267 30.769 0.00 0.00 32.98 1.40
3525 10256 8.732746 AAGTTCAGTGTCAACTTTAGTGTAAT 57.267 30.769 4.53 0.00 40.48 1.89
3543 10275 8.970859 ATATGGGATCTAGTTTTGAAGTTCAG 57.029 34.615 5.56 0.00 0.00 3.02
3544 10276 9.177608 CAATATGGGATCTAGTTTTGAAGTTCA 57.822 33.333 0.08 0.08 0.00 3.18
3545 10277 9.396022 TCAATATGGGATCTAGTTTTGAAGTTC 57.604 33.333 0.00 0.00 0.00 3.01
3546 10278 9.927081 ATCAATATGGGATCTAGTTTTGAAGTT 57.073 29.630 0.00 0.00 0.00 2.66
3612 10350 8.373048 TGTCGTGAAAAGTAGTTGAAATACAT 57.627 30.769 5.56 0.00 0.00 2.29
3666 10406 3.703286 AGTTTGCCGTGGTTAGTTTTC 57.297 42.857 0.00 0.00 0.00 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.