Multiple sequence alignment - TraesCS7A01G507300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G507300 chr7A 100.000 3158 0 0 1 3158 694296490 694293333 0.000000e+00 5832.0
1 TraesCS7A01G507300 chr7A 86.207 58 8 0 34 91 722190134 722190077 2.630000e-06 63.9
2 TraesCS7A01G507300 chr5A 97.095 2788 78 3 374 3158 31001449 30998662 0.000000e+00 4697.0
3 TraesCS7A01G507300 chr5A 97.023 2788 80 3 374 3158 31058697 31055910 0.000000e+00 4686.0
4 TraesCS7A01G507300 chr5A 96.951 2788 82 3 374 3158 701371594 701368807 0.000000e+00 4674.0
5 TraesCS7A01G507300 chr5A 96.700 2788 89 3 374 3158 30996056 30993269 0.000000e+00 4636.0
6 TraesCS7A01G507300 chr6A 96.771 2787 87 3 374 3158 21069162 21066377 0.000000e+00 4645.0
7 TraesCS7A01G507300 chr6A 96.485 2788 89 7 374 3158 606237278 606240059 0.000000e+00 4597.0
8 TraesCS7A01G507300 chr6D 96.417 2791 90 8 372 3158 82948387 82951171 0.000000e+00 4591.0
9 TraesCS7A01G507300 chr5D 96.238 2791 95 8 372 3158 448482801 448480017 0.000000e+00 4564.0
10 TraesCS7A01G507300 chr5D 95.878 2790 104 8 373 3158 427590198 427587416 0.000000e+00 4505.0
11 TraesCS7A01G507300 chr5D 88.333 60 7 0 26 85 366749696 366749755 4.370000e-09 73.1
12 TraesCS7A01G507300 chr3D 95.918 49 2 0 35 83 156894368 156894320 2.610000e-11 80.5
13 TraesCS7A01G507300 chr1A 93.750 48 3 0 36 83 529579785 529579832 4.370000e-09 73.1
14 TraesCS7A01G507300 chr4D 100.000 28 0 0 58 85 488649256 488649229 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G507300 chr7A 694293333 694296490 3157 True 5832.0 5832 100.0000 1 3158 1 chr7A.!!$R1 3157
1 TraesCS7A01G507300 chr5A 31055910 31058697 2787 True 4686.0 4686 97.0230 374 3158 1 chr5A.!!$R1 2784
2 TraesCS7A01G507300 chr5A 701368807 701371594 2787 True 4674.0 4674 96.9510 374 3158 1 chr5A.!!$R2 2784
3 TraesCS7A01G507300 chr5A 30993269 31001449 8180 True 4666.5 4697 96.8975 374 3158 2 chr5A.!!$R3 2784
4 TraesCS7A01G507300 chr6A 21066377 21069162 2785 True 4645.0 4645 96.7710 374 3158 1 chr6A.!!$R1 2784
5 TraesCS7A01G507300 chr6A 606237278 606240059 2781 False 4597.0 4597 96.4850 374 3158 1 chr6A.!!$F1 2784
6 TraesCS7A01G507300 chr6D 82948387 82951171 2784 False 4591.0 4591 96.4170 372 3158 1 chr6D.!!$F1 2786
7 TraesCS7A01G507300 chr5D 448480017 448482801 2784 True 4564.0 4564 96.2380 372 3158 1 chr5D.!!$R2 2786
8 TraesCS7A01G507300 chr5D 427587416 427590198 2782 True 4505.0 4505 95.8780 373 3158 1 chr5D.!!$R1 2785

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
250 251 0.031857 CTGCGGCCATCAAACAACAA 59.968 50.0 2.24 0.0 0.0 2.83 F
349 350 0.095935 CTGCTCACGATCTTTTGGCG 59.904 55.0 0.00 0.0 0.0 5.69 F
350 351 0.320334 TGCTCACGATCTTTTGGCGA 60.320 50.0 0.00 0.0 0.0 5.54 F
351 352 0.371645 GCTCACGATCTTTTGGCGAG 59.628 55.0 0.00 0.0 0.0 5.03 F
352 353 0.371645 CTCACGATCTTTTGGCGAGC 59.628 55.0 0.00 0.0 0.0 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1315 1318 0.893270 TTGACGCCCTCAAATGGTGG 60.893 55.000 0.00 0.0 35.84 4.61 R
1332 1335 1.933853 GCACGCCACCTCTTATAGTTG 59.066 52.381 0.00 0.0 0.00 3.16 R
1530 1535 3.738982 CGCATCCCACATATCTTTACCA 58.261 45.455 0.00 0.0 0.00 3.25 R
1888 1893 4.038642 TCTCTTTTGTACCAAATTGGCACC 59.961 41.667 12.67 0.5 42.67 5.01 R
2196 2202 5.191522 TCCACCAATCTGGAGAATGACATAA 59.808 40.000 0.00 0.0 40.96 1.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.079503 GCTTCTACTGAAACTGCCCG 58.920 55.000 0.00 0.00 0.00 6.13
20 21 1.337823 GCTTCTACTGAAACTGCCCGA 60.338 52.381 0.00 0.00 0.00 5.14
21 22 2.338500 CTTCTACTGAAACTGCCCGAC 58.662 52.381 0.00 0.00 0.00 4.79
22 23 0.242825 TCTACTGAAACTGCCCGACG 59.757 55.000 0.00 0.00 0.00 5.12
23 24 0.242825 CTACTGAAACTGCCCGACGA 59.757 55.000 0.00 0.00 0.00 4.20
24 25 0.038892 TACTGAAACTGCCCGACGAC 60.039 55.000 0.00 0.00 0.00 4.34
25 26 1.006102 CTGAAACTGCCCGACGACT 60.006 57.895 0.00 0.00 0.00 4.18
26 27 0.242825 CTGAAACTGCCCGACGACTA 59.757 55.000 0.00 0.00 0.00 2.59
27 28 0.675083 TGAAACTGCCCGACGACTAA 59.325 50.000 0.00 0.00 0.00 2.24
28 29 1.068895 TGAAACTGCCCGACGACTAAA 59.931 47.619 0.00 0.00 0.00 1.85
29 30 2.137523 GAAACTGCCCGACGACTAAAA 58.862 47.619 0.00 0.00 0.00 1.52
30 31 2.243602 AACTGCCCGACGACTAAAAA 57.756 45.000 0.00 0.00 0.00 1.94
50 51 6.735263 AAAAATTCGAATTTTAACACGCGA 57.265 29.167 36.30 0.00 45.16 5.87
51 52 6.735263 AAAATTCGAATTTTAACACGCGAA 57.265 29.167 35.70 0.00 44.36 4.70
52 53 5.968251 AATTCGAATTTTAACACGCGAAG 57.032 34.783 17.60 7.57 40.42 3.79
53 54 5.164225 AAATTCGAATTTTAACACGCGAAGC 60.164 36.000 26.51 0.00 42.71 3.86
54 55 7.484807 AAATTCGAATTTTAACACGCGAAGCA 61.485 34.615 26.51 0.00 45.14 3.91
55 56 9.170273 AAATTCGAATTTTAACACGCGAAGCAG 62.170 37.037 26.51 0.00 45.14 4.24
66 67 1.839407 CGAAGCAGTTTTTGTGCGC 59.161 52.632 0.00 0.00 46.06 6.09
67 68 1.539776 CGAAGCAGTTTTTGTGCGCC 61.540 55.000 4.18 0.00 46.06 6.53
68 69 0.249031 GAAGCAGTTTTTGTGCGCCT 60.249 50.000 4.18 0.00 46.06 5.52
69 70 0.528249 AAGCAGTTTTTGTGCGCCTG 60.528 50.000 4.18 3.80 46.06 4.85
70 71 1.226945 GCAGTTTTTGTGCGCCTGT 60.227 52.632 4.18 0.00 0.00 4.00
71 72 0.805711 GCAGTTTTTGTGCGCCTGTT 60.806 50.000 4.18 0.00 0.00 3.16
72 73 0.922717 CAGTTTTTGTGCGCCTGTTG 59.077 50.000 4.18 0.00 0.00 3.33
73 74 0.179113 AGTTTTTGTGCGCCTGTTGG 60.179 50.000 4.18 0.00 0.00 3.77
74 75 0.179124 GTTTTTGTGCGCCTGTTGGA 60.179 50.000 4.18 0.00 34.57 3.53
75 76 0.102120 TTTTTGTGCGCCTGTTGGAG 59.898 50.000 4.18 0.00 36.16 3.86
76 77 0.749818 TTTTGTGCGCCTGTTGGAGA 60.750 50.000 4.18 0.00 34.95 3.71
77 78 0.537143 TTTGTGCGCCTGTTGGAGAT 60.537 50.000 4.18 0.00 34.95 2.75
78 79 0.323302 TTGTGCGCCTGTTGGAGATA 59.677 50.000 4.18 0.00 34.95 1.98
79 80 0.391130 TGTGCGCCTGTTGGAGATAC 60.391 55.000 4.18 0.00 34.95 2.24
80 81 0.108138 GTGCGCCTGTTGGAGATACT 60.108 55.000 4.18 0.00 34.95 2.12
81 82 0.175760 TGCGCCTGTTGGAGATACTC 59.824 55.000 4.18 0.00 34.95 2.59
82 83 0.461961 GCGCCTGTTGGAGATACTCT 59.538 55.000 0.00 0.00 34.95 3.24
83 84 1.134670 GCGCCTGTTGGAGATACTCTT 60.135 52.381 0.00 0.00 34.95 2.85
84 85 2.100916 GCGCCTGTTGGAGATACTCTTA 59.899 50.000 0.00 0.00 34.95 2.10
85 86 3.243907 GCGCCTGTTGGAGATACTCTTAT 60.244 47.826 0.00 0.00 34.95 1.73
86 87 4.551388 CGCCTGTTGGAGATACTCTTATC 58.449 47.826 0.00 0.00 34.95 1.75
87 88 4.559704 CGCCTGTTGGAGATACTCTTATCC 60.560 50.000 0.00 0.00 35.53 2.59
88 89 4.591072 GCCTGTTGGAGATACTCTTATCCT 59.409 45.833 0.00 0.00 35.53 3.24
89 90 5.071115 GCCTGTTGGAGATACTCTTATCCTT 59.929 44.000 0.00 0.00 35.53 3.36
90 91 6.267928 GCCTGTTGGAGATACTCTTATCCTTA 59.732 42.308 0.00 0.00 35.53 2.69
91 92 7.038658 GCCTGTTGGAGATACTCTTATCCTTAT 60.039 40.741 0.00 0.00 35.53 1.73
92 93 8.527810 CCTGTTGGAGATACTCTTATCCTTATC 58.472 40.741 0.00 0.00 35.53 1.75
93 94 9.308000 CTGTTGGAGATACTCTTATCCTTATCT 57.692 37.037 0.00 0.00 35.53 1.98
94 95 9.303116 TGTTGGAGATACTCTTATCCTTATCTC 57.697 37.037 8.38 8.38 43.19 2.75
95 96 9.528489 GTTGGAGATACTCTTATCCTTATCTCT 57.472 37.037 14.17 0.00 43.34 3.10
97 98 9.527157 TGGAGATACTCTTATCCTTATCTCTTG 57.473 37.037 14.17 0.00 43.34 3.02
98 99 9.747898 GGAGATACTCTTATCCTTATCTCTTGA 57.252 37.037 14.17 0.00 43.34 3.02
100 101 9.226606 AGATACTCTTATCCTTATCTCTTGACG 57.773 37.037 0.00 0.00 35.53 4.35
101 102 9.221933 GATACTCTTATCCTTATCTCTTGACGA 57.778 37.037 0.00 0.00 0.00 4.20
102 103 7.504924 ACTCTTATCCTTATCTCTTGACGAG 57.495 40.000 0.00 0.00 41.30 4.18
124 125 2.070262 GCATCAGCCACTGGTTTTTC 57.930 50.000 0.00 0.00 33.58 2.29
125 126 1.615392 GCATCAGCCACTGGTTTTTCT 59.385 47.619 0.00 0.00 33.58 2.52
126 127 2.819608 GCATCAGCCACTGGTTTTTCTA 59.180 45.455 0.00 0.00 33.58 2.10
127 128 3.255642 GCATCAGCCACTGGTTTTTCTAA 59.744 43.478 0.00 0.00 33.58 2.10
128 129 4.798574 CATCAGCCACTGGTTTTTCTAAC 58.201 43.478 0.00 0.00 31.51 2.34
129 130 2.875933 TCAGCCACTGGTTTTTCTAACG 59.124 45.455 0.00 0.00 31.51 3.18
130 131 2.616842 CAGCCACTGGTTTTTCTAACGT 59.383 45.455 0.00 0.00 0.00 3.99
131 132 2.616842 AGCCACTGGTTTTTCTAACGTG 59.383 45.455 0.00 0.00 0.00 4.49
132 133 2.356695 GCCACTGGTTTTTCTAACGTGT 59.643 45.455 0.00 0.00 0.00 4.49
133 134 3.790789 GCCACTGGTTTTTCTAACGTGTG 60.791 47.826 0.00 0.00 0.00 3.82
134 135 3.242936 CCACTGGTTTTTCTAACGTGTGG 60.243 47.826 12.64 12.64 37.61 4.17
135 136 2.356695 ACTGGTTTTTCTAACGTGTGGC 59.643 45.455 0.00 0.00 0.00 5.01
136 137 2.356382 CTGGTTTTTCTAACGTGTGGCA 59.644 45.455 0.00 0.00 0.00 4.92
137 138 2.753452 TGGTTTTTCTAACGTGTGGCAA 59.247 40.909 0.00 0.00 0.00 4.52
138 139 3.181495 TGGTTTTTCTAACGTGTGGCAAG 60.181 43.478 0.00 0.00 0.00 4.01
139 140 3.368495 GTTTTTCTAACGTGTGGCAAGG 58.632 45.455 0.00 0.00 0.00 3.61
140 141 2.335316 TTTCTAACGTGTGGCAAGGT 57.665 45.000 0.00 0.00 0.00 3.50
141 142 3.472283 TTTCTAACGTGTGGCAAGGTA 57.528 42.857 0.00 0.00 0.00 3.08
142 143 3.688694 TTCTAACGTGTGGCAAGGTAT 57.311 42.857 0.00 0.00 0.00 2.73
143 144 2.967362 TCTAACGTGTGGCAAGGTATG 58.033 47.619 0.00 0.00 0.00 2.39
144 145 2.300723 TCTAACGTGTGGCAAGGTATGT 59.699 45.455 0.00 0.00 0.00 2.29
145 146 1.519408 AACGTGTGGCAAGGTATGTC 58.481 50.000 0.00 0.00 0.00 3.06
146 147 0.394938 ACGTGTGGCAAGGTATGTCA 59.605 50.000 0.00 0.00 42.62 3.58
150 151 3.225272 TGGCAAGGTATGTCACACG 57.775 52.632 0.00 0.00 39.16 4.49
151 152 0.394938 TGGCAAGGTATGTCACACGT 59.605 50.000 0.00 0.00 39.16 4.49
152 153 1.076332 GGCAAGGTATGTCACACGTC 58.924 55.000 0.00 0.00 32.41 4.34
153 154 1.076332 GCAAGGTATGTCACACGTCC 58.924 55.000 0.00 0.00 0.00 4.79
154 155 1.337823 GCAAGGTATGTCACACGTCCT 60.338 52.381 0.00 0.00 0.00 3.85
155 156 2.094390 GCAAGGTATGTCACACGTCCTA 60.094 50.000 0.00 0.00 0.00 2.94
156 157 3.615592 GCAAGGTATGTCACACGTCCTAA 60.616 47.826 0.00 0.00 0.00 2.69
157 158 4.174009 CAAGGTATGTCACACGTCCTAAG 58.826 47.826 0.00 0.00 0.00 2.18
158 159 2.165845 AGGTATGTCACACGTCCTAAGC 59.834 50.000 0.00 0.00 0.00 3.09
159 160 2.094390 GGTATGTCACACGTCCTAAGCA 60.094 50.000 0.00 0.00 0.00 3.91
160 161 2.080286 ATGTCACACGTCCTAAGCAC 57.920 50.000 0.00 0.00 0.00 4.40
161 162 0.032952 TGTCACACGTCCTAAGCACC 59.967 55.000 0.00 0.00 0.00 5.01
162 163 0.669625 GTCACACGTCCTAAGCACCC 60.670 60.000 0.00 0.00 0.00 4.61
163 164 0.830444 TCACACGTCCTAAGCACCCT 60.830 55.000 0.00 0.00 0.00 4.34
164 165 0.670546 CACACGTCCTAAGCACCCTG 60.671 60.000 0.00 0.00 0.00 4.45
165 166 1.119574 ACACGTCCTAAGCACCCTGT 61.120 55.000 0.00 0.00 0.00 4.00
166 167 0.389948 CACGTCCTAAGCACCCTGTC 60.390 60.000 0.00 0.00 0.00 3.51
167 168 0.830444 ACGTCCTAAGCACCCTGTCA 60.830 55.000 0.00 0.00 0.00 3.58
168 169 0.108615 CGTCCTAAGCACCCTGTCAG 60.109 60.000 0.00 0.00 0.00 3.51
169 170 1.267121 GTCCTAAGCACCCTGTCAGA 58.733 55.000 0.00 0.00 0.00 3.27
170 171 1.205893 GTCCTAAGCACCCTGTCAGAG 59.794 57.143 0.00 0.00 0.00 3.35
171 172 0.539051 CCTAAGCACCCTGTCAGAGG 59.461 60.000 0.00 3.63 42.38 3.69
178 179 2.583520 CCTGTCAGAGGGAGCAGC 59.416 66.667 0.00 0.00 38.36 5.25
179 180 1.988956 CCTGTCAGAGGGAGCAGCT 60.989 63.158 0.00 0.00 38.36 4.24
180 181 0.685785 CCTGTCAGAGGGAGCAGCTA 60.686 60.000 0.00 0.00 38.36 3.32
181 182 1.189752 CTGTCAGAGGGAGCAGCTAA 58.810 55.000 0.00 0.00 0.00 3.09
182 183 1.552337 CTGTCAGAGGGAGCAGCTAAA 59.448 52.381 0.00 0.00 0.00 1.85
183 184 1.977854 TGTCAGAGGGAGCAGCTAAAA 59.022 47.619 0.00 0.00 0.00 1.52
184 185 2.573462 TGTCAGAGGGAGCAGCTAAAAT 59.427 45.455 0.00 0.00 0.00 1.82
185 186 3.202097 GTCAGAGGGAGCAGCTAAAATC 58.798 50.000 0.00 0.00 0.00 2.17
186 187 2.171448 TCAGAGGGAGCAGCTAAAATCC 59.829 50.000 0.00 0.00 0.00 3.01
187 188 2.172293 CAGAGGGAGCAGCTAAAATCCT 59.828 50.000 0.00 0.00 32.18 3.24
188 189 2.172293 AGAGGGAGCAGCTAAAATCCTG 59.828 50.000 0.00 0.00 32.18 3.86
189 190 1.213926 AGGGAGCAGCTAAAATCCTGG 59.786 52.381 0.00 0.00 32.18 4.45
190 191 1.064389 GGGAGCAGCTAAAATCCTGGT 60.064 52.381 0.00 0.00 41.96 4.00
193 194 3.659183 AGCAGCTAAAATCCTGGTCAT 57.341 42.857 0.00 0.00 35.04 3.06
194 195 3.285484 AGCAGCTAAAATCCTGGTCATG 58.715 45.455 0.00 0.00 35.04 3.07
195 196 3.019564 GCAGCTAAAATCCTGGTCATGT 58.980 45.455 0.00 0.00 0.00 3.21
196 197 4.080356 AGCAGCTAAAATCCTGGTCATGTA 60.080 41.667 0.00 0.00 35.04 2.29
197 198 4.035675 GCAGCTAAAATCCTGGTCATGTAC 59.964 45.833 0.00 0.00 0.00 2.90
198 199 5.431765 CAGCTAAAATCCTGGTCATGTACT 58.568 41.667 0.00 0.00 0.00 2.73
199 200 5.525378 CAGCTAAAATCCTGGTCATGTACTC 59.475 44.000 0.00 0.00 0.00 2.59
200 201 5.189736 AGCTAAAATCCTGGTCATGTACTCA 59.810 40.000 0.00 0.00 0.00 3.41
201 202 6.058183 GCTAAAATCCTGGTCATGTACTCAT 58.942 40.000 0.00 0.00 34.21 2.90
214 215 6.695292 CATGTACTCATGGCAAAGAAAAAC 57.305 37.500 7.20 1.37 45.30 2.43
215 216 5.843673 TGTACTCATGGCAAAGAAAAACA 57.156 34.783 7.20 3.54 0.00 2.83
216 217 5.587289 TGTACTCATGGCAAAGAAAAACAC 58.413 37.500 7.20 0.00 0.00 3.32
217 218 5.359576 TGTACTCATGGCAAAGAAAAACACT 59.640 36.000 7.20 0.00 0.00 3.55
218 219 4.936891 ACTCATGGCAAAGAAAAACACTC 58.063 39.130 7.20 0.00 0.00 3.51
219 220 4.202151 ACTCATGGCAAAGAAAAACACTCC 60.202 41.667 7.20 0.00 0.00 3.85
220 221 2.861462 TGGCAAAGAAAAACACTCCG 57.139 45.000 0.00 0.00 0.00 4.63
221 222 2.096248 TGGCAAAGAAAAACACTCCGT 58.904 42.857 0.00 0.00 0.00 4.69
222 223 2.159310 TGGCAAAGAAAAACACTCCGTG 60.159 45.455 0.00 0.00 39.75 4.94
223 224 1.852280 GCAAAGAAAAACACTCCGTGC 59.148 47.619 0.00 0.00 36.98 5.34
224 225 2.459934 CAAAGAAAAACACTCCGTGCC 58.540 47.619 0.00 0.00 36.98 5.01
225 226 1.757682 AAGAAAAACACTCCGTGCCA 58.242 45.000 0.00 0.00 36.98 4.92
226 227 1.981256 AGAAAAACACTCCGTGCCAT 58.019 45.000 0.00 0.00 36.98 4.40
227 228 3.134574 AGAAAAACACTCCGTGCCATA 57.865 42.857 0.00 0.00 36.98 2.74
228 229 3.482436 AGAAAAACACTCCGTGCCATAA 58.518 40.909 0.00 0.00 36.98 1.90
229 230 3.886505 AGAAAAACACTCCGTGCCATAAA 59.113 39.130 0.00 0.00 36.98 1.40
230 231 4.339814 AGAAAAACACTCCGTGCCATAAAA 59.660 37.500 0.00 0.00 36.98 1.52
231 232 3.636282 AAACACTCCGTGCCATAAAAC 57.364 42.857 0.00 0.00 36.98 2.43
232 233 2.561478 ACACTCCGTGCCATAAAACT 57.439 45.000 0.00 0.00 36.98 2.66
233 234 2.151202 ACACTCCGTGCCATAAAACTG 58.849 47.619 0.00 0.00 36.98 3.16
234 235 1.135689 CACTCCGTGCCATAAAACTGC 60.136 52.381 0.00 0.00 0.00 4.40
235 236 0.096976 CTCCGTGCCATAAAACTGCG 59.903 55.000 0.00 0.00 0.00 5.18
236 237 1.136565 CCGTGCCATAAAACTGCGG 59.863 57.895 0.00 0.00 0.00 5.69
237 238 1.514014 CGTGCCATAAAACTGCGGC 60.514 57.895 0.00 0.00 45.11 6.53
238 239 1.153842 GTGCCATAAAACTGCGGCC 60.154 57.895 0.00 0.00 44.22 6.13
239 240 1.604879 TGCCATAAAACTGCGGCCA 60.605 52.632 2.24 0.00 44.22 5.36
240 241 0.969917 TGCCATAAAACTGCGGCCAT 60.970 50.000 2.24 0.00 44.22 4.40
241 242 0.249031 GCCATAAAACTGCGGCCATC 60.249 55.000 2.24 0.00 38.67 3.51
242 243 1.102154 CCATAAAACTGCGGCCATCA 58.898 50.000 2.24 0.00 0.00 3.07
243 244 1.476085 CCATAAAACTGCGGCCATCAA 59.524 47.619 2.24 0.00 0.00 2.57
244 245 2.094286 CCATAAAACTGCGGCCATCAAA 60.094 45.455 2.24 0.00 0.00 2.69
245 246 2.715737 TAAAACTGCGGCCATCAAAC 57.284 45.000 2.24 0.00 0.00 2.93
246 247 0.749649 AAAACTGCGGCCATCAAACA 59.250 45.000 2.24 0.00 0.00 2.83
247 248 0.749649 AAACTGCGGCCATCAAACAA 59.250 45.000 2.24 0.00 0.00 2.83
248 249 0.031994 AACTGCGGCCATCAAACAAC 59.968 50.000 2.24 0.00 0.00 3.32
249 250 1.106351 ACTGCGGCCATCAAACAACA 61.106 50.000 2.24 0.00 0.00 3.33
250 251 0.031857 CTGCGGCCATCAAACAACAA 59.968 50.000 2.24 0.00 0.00 2.83
251 252 0.678395 TGCGGCCATCAAACAACAAT 59.322 45.000 2.24 0.00 0.00 2.71
252 253 1.070038 GCGGCCATCAAACAACAATG 58.930 50.000 2.24 0.00 0.00 2.82
253 254 1.336702 GCGGCCATCAAACAACAATGA 60.337 47.619 2.24 0.00 0.00 2.57
254 255 2.865670 GCGGCCATCAAACAACAATGAA 60.866 45.455 2.24 0.00 0.00 2.57
255 256 3.587923 CGGCCATCAAACAACAATGAAT 58.412 40.909 2.24 0.00 0.00 2.57
256 257 3.368539 CGGCCATCAAACAACAATGAATG 59.631 43.478 2.24 0.00 0.00 2.67
257 258 3.125658 GGCCATCAAACAACAATGAATGC 59.874 43.478 0.00 0.00 0.00 3.56
258 259 3.747010 GCCATCAAACAACAATGAATGCA 59.253 39.130 0.00 0.00 0.00 3.96
259 260 4.393680 GCCATCAAACAACAATGAATGCAT 59.606 37.500 0.00 0.00 35.92 3.96
260 261 5.446741 GCCATCAAACAACAATGAATGCATC 60.447 40.000 0.00 0.00 32.35 3.91
261 262 5.064198 CCATCAAACAACAATGAATGCATCC 59.936 40.000 0.00 0.00 32.35 3.51
262 263 5.211174 TCAAACAACAATGAATGCATCCA 57.789 34.783 0.00 0.00 32.35 3.41
263 264 5.795972 TCAAACAACAATGAATGCATCCAT 58.204 33.333 0.00 0.00 32.35 3.41
264 265 5.870433 TCAAACAACAATGAATGCATCCATC 59.130 36.000 0.00 0.00 32.35 3.51
265 266 4.395959 ACAACAATGAATGCATCCATCC 57.604 40.909 0.00 0.00 32.35 3.51
266 267 3.770388 ACAACAATGAATGCATCCATCCA 59.230 39.130 0.00 0.00 32.35 3.41
267 268 4.142026 ACAACAATGAATGCATCCATCCAG 60.142 41.667 0.00 0.00 32.35 3.86
268 269 3.638860 ACAATGAATGCATCCATCCAGT 58.361 40.909 0.00 0.00 32.35 4.00
269 270 4.028131 ACAATGAATGCATCCATCCAGTT 58.972 39.130 0.00 0.00 32.35 3.16
270 271 4.142026 ACAATGAATGCATCCATCCAGTTG 60.142 41.667 0.00 0.00 32.35 3.16
271 272 1.752498 TGAATGCATCCATCCAGTTGC 59.248 47.619 0.00 0.00 35.67 4.17
273 274 3.600187 TGCATCCATCCAGTTGCAT 57.400 47.368 0.00 0.00 39.98 3.96
274 275 2.732844 TGCATCCATCCAGTTGCATA 57.267 45.000 0.00 0.00 39.98 3.14
275 276 2.300433 TGCATCCATCCAGTTGCATAC 58.700 47.619 0.00 0.00 39.98 2.39
276 277 1.610522 GCATCCATCCAGTTGCATACC 59.389 52.381 0.00 0.00 35.22 2.73
277 278 2.233271 CATCCATCCAGTTGCATACCC 58.767 52.381 0.00 0.00 0.00 3.69
278 279 1.294041 TCCATCCAGTTGCATACCCA 58.706 50.000 0.00 0.00 0.00 4.51
279 280 1.852309 TCCATCCAGTTGCATACCCAT 59.148 47.619 0.00 0.00 0.00 4.00
280 281 3.052329 TCCATCCAGTTGCATACCCATA 58.948 45.455 0.00 0.00 0.00 2.74
281 282 3.072915 TCCATCCAGTTGCATACCCATAG 59.927 47.826 0.00 0.00 0.00 2.23
282 283 3.181440 CCATCCAGTTGCATACCCATAGT 60.181 47.826 0.00 0.00 0.00 2.12
283 284 3.558931 TCCAGTTGCATACCCATAGTG 57.441 47.619 0.00 0.00 0.00 2.74
284 285 3.111484 TCCAGTTGCATACCCATAGTGA 58.889 45.455 0.00 0.00 0.00 3.41
285 286 3.118408 TCCAGTTGCATACCCATAGTGAC 60.118 47.826 0.00 0.00 0.00 3.67
286 287 3.118261 CCAGTTGCATACCCATAGTGACT 60.118 47.826 0.00 0.00 0.00 3.41
287 288 3.873361 CAGTTGCATACCCATAGTGACTG 59.127 47.826 0.00 0.00 0.00 3.51
288 289 3.118261 AGTTGCATACCCATAGTGACTGG 60.118 47.826 0.00 0.00 0.00 4.00
289 290 2.477245 TGCATACCCATAGTGACTGGT 58.523 47.619 0.00 0.00 34.85 4.00
290 291 2.170397 TGCATACCCATAGTGACTGGTG 59.830 50.000 3.57 0.00 32.27 4.17
291 292 2.485479 GCATACCCATAGTGACTGGTGG 60.485 54.545 10.73 10.73 32.27 4.61
292 293 2.932184 TACCCATAGTGACTGGTGGA 57.068 50.000 17.15 0.00 33.53 4.02
293 294 2.038863 ACCCATAGTGACTGGTGGAA 57.961 50.000 17.15 0.00 33.53 3.53
294 295 1.628846 ACCCATAGTGACTGGTGGAAC 59.371 52.381 17.15 0.00 33.53 3.62
295 296 1.628340 CCCATAGTGACTGGTGGAACA 59.372 52.381 17.15 0.00 39.98 3.18
307 308 1.295423 TGGAACACGCTAGCTTCCC 59.705 57.895 24.09 13.90 33.69 3.97
308 309 1.295423 GGAACACGCTAGCTTCCCA 59.705 57.895 18.97 0.00 0.00 4.37
309 310 0.321298 GGAACACGCTAGCTTCCCAA 60.321 55.000 18.97 0.00 0.00 4.12
310 311 0.796927 GAACACGCTAGCTTCCCAAC 59.203 55.000 13.93 0.00 0.00 3.77
311 312 0.949105 AACACGCTAGCTTCCCAACG 60.949 55.000 13.93 0.00 0.00 4.10
312 313 1.080093 CACGCTAGCTTCCCAACGA 60.080 57.895 13.93 0.00 0.00 3.85
313 314 1.080025 ACGCTAGCTTCCCAACGAC 60.080 57.895 13.93 0.00 0.00 4.34
314 315 1.080093 CGCTAGCTTCCCAACGACA 60.080 57.895 13.93 0.00 0.00 4.35
315 316 0.460284 CGCTAGCTTCCCAACGACAT 60.460 55.000 13.93 0.00 0.00 3.06
316 317 1.202371 CGCTAGCTTCCCAACGACATA 60.202 52.381 13.93 0.00 0.00 2.29
317 318 2.202566 GCTAGCTTCCCAACGACATAC 58.797 52.381 7.70 0.00 0.00 2.39
318 319 2.159085 GCTAGCTTCCCAACGACATACT 60.159 50.000 7.70 0.00 0.00 2.12
319 320 2.386661 AGCTTCCCAACGACATACTG 57.613 50.000 0.00 0.00 0.00 2.74
320 321 1.899814 AGCTTCCCAACGACATACTGA 59.100 47.619 0.00 0.00 0.00 3.41
321 322 2.301870 AGCTTCCCAACGACATACTGAA 59.698 45.455 0.00 0.00 0.00 3.02
322 323 2.415512 GCTTCCCAACGACATACTGAAC 59.584 50.000 0.00 0.00 0.00 3.18
323 324 2.357327 TCCCAACGACATACTGAACG 57.643 50.000 0.00 0.00 0.00 3.95
324 325 0.719465 CCCAACGACATACTGAACGC 59.281 55.000 0.00 0.00 0.00 4.84
325 326 1.424403 CCAACGACATACTGAACGCA 58.576 50.000 0.00 0.00 0.00 5.24
326 327 1.999735 CCAACGACATACTGAACGCAT 59.000 47.619 0.00 0.00 0.00 4.73
327 328 2.222796 CCAACGACATACTGAACGCATG 60.223 50.000 0.00 0.00 0.00 4.06
328 329 2.363788 ACGACATACTGAACGCATGT 57.636 45.000 0.00 0.00 35.65 3.21
329 330 2.259618 ACGACATACTGAACGCATGTC 58.740 47.619 0.00 4.27 43.25 3.06
330 331 1.588404 CGACATACTGAACGCATGTCC 59.412 52.381 8.02 0.00 43.60 4.02
331 332 2.735444 CGACATACTGAACGCATGTCCT 60.735 50.000 8.02 0.00 43.60 3.85
332 333 2.604914 GACATACTGAACGCATGTCCTG 59.395 50.000 0.00 0.00 41.67 3.86
343 344 2.306341 CATGTCCTGCTCACGATCTT 57.694 50.000 0.00 0.00 0.00 2.40
344 345 2.625737 CATGTCCTGCTCACGATCTTT 58.374 47.619 0.00 0.00 0.00 2.52
345 346 2.839486 TGTCCTGCTCACGATCTTTT 57.161 45.000 0.00 0.00 0.00 2.27
346 347 2.416747 TGTCCTGCTCACGATCTTTTG 58.583 47.619 0.00 0.00 0.00 2.44
347 348 1.734465 GTCCTGCTCACGATCTTTTGG 59.266 52.381 0.00 0.00 0.00 3.28
348 349 0.449388 CCTGCTCACGATCTTTTGGC 59.551 55.000 0.00 0.00 0.00 4.52
349 350 0.095935 CTGCTCACGATCTTTTGGCG 59.904 55.000 0.00 0.00 0.00 5.69
350 351 0.320334 TGCTCACGATCTTTTGGCGA 60.320 50.000 0.00 0.00 0.00 5.54
351 352 0.371645 GCTCACGATCTTTTGGCGAG 59.628 55.000 0.00 0.00 0.00 5.03
352 353 0.371645 CTCACGATCTTTTGGCGAGC 59.628 55.000 0.00 0.00 0.00 5.03
353 354 1.059369 CACGATCTTTTGGCGAGCG 59.941 57.895 0.00 0.00 44.89 5.03
354 355 2.021931 CGATCTTTTGGCGAGCGC 59.978 61.111 6.27 6.27 33.42 5.92
355 356 2.021931 GATCTTTTGGCGAGCGCG 59.978 61.111 5.14 5.14 43.06 6.86
356 357 3.440356 GATCTTTTGGCGAGCGCGG 62.440 63.158 12.86 0.00 43.06 6.46
357 358 3.950794 ATCTTTTGGCGAGCGCGGA 62.951 57.895 12.86 0.00 43.06 5.54
358 359 3.722295 CTTTTGGCGAGCGCGGAA 61.722 61.111 12.86 3.32 43.06 4.30
359 360 3.928618 CTTTTGGCGAGCGCGGAAC 62.929 63.158 12.86 0.00 43.06 3.62
360 361 4.980805 TTTGGCGAGCGCGGAACT 62.981 61.111 12.86 0.00 43.06 3.01
365 366 4.717629 CGAGCGCGGAACTGGTCA 62.718 66.667 8.83 0.00 33.00 4.02
366 367 2.811317 GAGCGCGGAACTGGTCAG 60.811 66.667 8.83 0.00 33.00 3.51
367 368 4.379243 AGCGCGGAACTGGTCAGG 62.379 66.667 8.83 0.00 0.00 3.86
368 369 4.681978 GCGCGGAACTGGTCAGGT 62.682 66.667 8.83 0.00 0.00 4.00
369 370 2.967397 CGCGGAACTGGTCAGGTA 59.033 61.111 0.00 0.00 0.00 3.08
370 371 1.290955 CGCGGAACTGGTCAGGTAA 59.709 57.895 0.00 0.00 0.00 2.85
439 440 9.995003 TTTGTGCCAATAATTCAAAGTAAATCT 57.005 25.926 0.00 0.00 0.00 2.40
501 502 2.702478 TGGAAAATTGACCAATGCCACA 59.298 40.909 1.98 0.00 32.93 4.17
558 559 6.018589 TGAAACAATTGACGCATAAATGGA 57.981 33.333 13.59 0.00 0.00 3.41
574 575 8.031277 GCATAAATGGAAGAAGAAACTGAACAT 58.969 33.333 0.00 0.00 0.00 2.71
647 649 5.297278 AGTGCGTCTGTTTAATGGTGTTTAA 59.703 36.000 0.00 0.00 0.00 1.52
653 655 7.145323 GTCTGTTTAATGGTGTTTAATGCACT 58.855 34.615 0.00 0.00 37.07 4.40
697 699 2.550180 GCCAGTTTCAACTCTTCTCACC 59.450 50.000 0.00 0.00 37.08 4.02
714 716 5.632118 TCTCACCTATATAAGAGGTCGCTT 58.368 41.667 6.71 0.00 44.33 4.68
851 853 1.201429 AACCCCGCCTCTTGTGATCT 61.201 55.000 0.00 0.00 0.00 2.75
892 894 1.241990 GGTTTTTGGGGAGCGTCCTC 61.242 60.000 4.41 1.18 37.60 3.71
943 945 1.515519 GCGAACGGCGACATCACTA 60.516 57.895 16.62 0.00 44.57 2.74
1176 1178 9.899226 GAATTGTTGCTAGTTTCTAGTTTCATT 57.101 29.630 5.82 0.36 0.00 2.57
1231 1234 3.264998 TCCGGATTAAACTAAACGGGG 57.735 47.619 0.00 0.00 40.44 5.73
1284 1287 5.170748 CCTGAAATGTGTAGGCAATTTTCC 58.829 41.667 0.00 0.00 31.82 3.13
1315 1318 2.338785 GCTGCAACTCTCAAGCCCC 61.339 63.158 0.00 0.00 0.00 5.80
1332 1335 2.046285 CCCACCATTTGAGGGCGTC 61.046 63.158 0.00 0.00 35.44 5.19
1484 1489 4.887748 CTCTTTAGAGGTGCTGTCTTGAA 58.112 43.478 0.00 0.00 38.48 2.69
1555 1560 1.051008 AGATATGTGGGATGCGCTCA 58.949 50.000 9.73 0.00 0.00 4.26
1888 1893 5.531122 TCGTTTCTATGAGGGGAATACTG 57.469 43.478 0.00 0.00 0.00 2.74
2163 2169 4.512484 TGGCGATGTTGACATGAAAGATA 58.488 39.130 0.00 0.00 36.57 1.98
2196 2202 8.893563 TGGTAAATTTCCTACCATTCTTTCAT 57.106 30.769 7.14 0.00 43.11 2.57
2378 2384 5.649782 AGTTTACTTCGGGAAAGATCGTA 57.350 39.130 0.00 0.00 38.44 3.43
2697 2704 9.844257 AATCCCAAAATTTACAATTGTCAAAGA 57.156 25.926 15.85 7.18 0.00 2.52
3073 3081 1.764854 GACGCCTCCCTATTCCCCA 60.765 63.158 0.00 0.00 0.00 4.96
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.079503 CGGGCAGTTTCAGTAGAAGC 58.920 55.000 0.00 0.00 34.71 3.86
1 2 2.338500 GTCGGGCAGTTTCAGTAGAAG 58.662 52.381 0.00 0.00 34.71 2.85
2 3 1.336517 CGTCGGGCAGTTTCAGTAGAA 60.337 52.381 0.00 0.00 0.00 2.10
3 4 0.242825 CGTCGGGCAGTTTCAGTAGA 59.757 55.000 0.00 0.00 0.00 2.59
4 5 0.242825 TCGTCGGGCAGTTTCAGTAG 59.757 55.000 0.00 0.00 0.00 2.57
5 6 0.038892 GTCGTCGGGCAGTTTCAGTA 60.039 55.000 0.00 0.00 0.00 2.74
6 7 1.300697 GTCGTCGGGCAGTTTCAGT 60.301 57.895 0.00 0.00 0.00 3.41
7 8 0.242825 TAGTCGTCGGGCAGTTTCAG 59.757 55.000 0.00 0.00 0.00 3.02
8 9 0.675083 TTAGTCGTCGGGCAGTTTCA 59.325 50.000 0.00 0.00 0.00 2.69
9 10 1.787012 TTTAGTCGTCGGGCAGTTTC 58.213 50.000 0.00 0.00 0.00 2.78
10 11 2.243602 TTTTAGTCGTCGGGCAGTTT 57.756 45.000 0.00 0.00 0.00 2.66
11 12 2.243602 TTTTTAGTCGTCGGGCAGTT 57.756 45.000 0.00 0.00 0.00 3.16
12 13 3.993382 TTTTTAGTCGTCGGGCAGT 57.007 47.368 0.00 0.00 0.00 4.40
27 28 6.735263 TCGCGTGTTAAAATTCGAATTTTT 57.265 29.167 39.06 27.22 43.91 1.94
28 29 6.612705 GCTTCGCGTGTTAAAATTCGAATTTT 60.613 34.615 37.17 37.17 46.85 1.82
29 30 5.164225 GCTTCGCGTGTTAAAATTCGAATTT 60.164 36.000 26.51 26.51 40.15 1.82
30 31 4.319901 GCTTCGCGTGTTAAAATTCGAATT 59.680 37.500 17.60 17.60 35.77 2.17
31 32 3.844099 GCTTCGCGTGTTAAAATTCGAAT 59.156 39.130 5.77 4.39 35.77 3.34
32 33 3.219981 GCTTCGCGTGTTAAAATTCGAA 58.780 40.909 5.77 0.00 35.18 3.71
33 34 2.221286 TGCTTCGCGTGTTAAAATTCGA 59.779 40.909 5.77 0.00 0.00 3.71
34 35 2.566036 TGCTTCGCGTGTTAAAATTCG 58.434 42.857 5.77 0.00 0.00 3.34
35 36 3.551551 ACTGCTTCGCGTGTTAAAATTC 58.448 40.909 5.77 0.00 0.00 2.17
36 37 3.619233 ACTGCTTCGCGTGTTAAAATT 57.381 38.095 5.77 0.00 0.00 1.82
37 38 3.619233 AACTGCTTCGCGTGTTAAAAT 57.381 38.095 5.77 0.00 0.00 1.82
38 39 3.408288 AAACTGCTTCGCGTGTTAAAA 57.592 38.095 5.77 0.00 30.57 1.52
39 40 3.408288 AAAACTGCTTCGCGTGTTAAA 57.592 38.095 5.77 0.00 30.57 1.52
40 41 3.102276 CAAAAACTGCTTCGCGTGTTAA 58.898 40.909 5.77 0.00 30.57 2.01
41 42 2.096174 ACAAAAACTGCTTCGCGTGTTA 59.904 40.909 5.77 0.00 30.57 2.41
42 43 1.135517 ACAAAAACTGCTTCGCGTGTT 60.136 42.857 5.77 2.31 31.60 3.32
43 44 0.450184 ACAAAAACTGCTTCGCGTGT 59.550 45.000 5.77 0.00 0.00 4.49
44 45 0.839477 CACAAAAACTGCTTCGCGTG 59.161 50.000 5.77 1.17 0.00 5.34
45 46 0.865639 GCACAAAAACTGCTTCGCGT 60.866 50.000 5.77 0.00 0.00 6.01
46 47 1.839407 GCACAAAAACTGCTTCGCG 59.161 52.632 0.00 0.00 0.00 5.87
47 48 1.839407 CGCACAAAAACTGCTTCGC 59.161 52.632 0.00 0.00 32.03 4.70
48 49 1.539776 GGCGCACAAAAACTGCTTCG 61.540 55.000 10.83 0.00 32.03 3.79
49 50 0.249031 AGGCGCACAAAAACTGCTTC 60.249 50.000 10.83 0.00 32.03 3.86
50 51 0.528249 CAGGCGCACAAAAACTGCTT 60.528 50.000 10.83 0.00 32.03 3.91
51 52 1.066257 CAGGCGCACAAAAACTGCT 59.934 52.632 10.83 0.00 32.03 4.24
52 53 0.805711 AACAGGCGCACAAAAACTGC 60.806 50.000 10.83 0.00 32.60 4.40
53 54 0.922717 CAACAGGCGCACAAAAACTG 59.077 50.000 10.83 7.96 35.40 3.16
54 55 0.179113 CCAACAGGCGCACAAAAACT 60.179 50.000 10.83 0.00 0.00 2.66
55 56 0.179124 TCCAACAGGCGCACAAAAAC 60.179 50.000 10.83 0.00 0.00 2.43
56 57 0.102120 CTCCAACAGGCGCACAAAAA 59.898 50.000 10.83 0.00 0.00 1.94
57 58 0.749818 TCTCCAACAGGCGCACAAAA 60.750 50.000 10.83 0.00 0.00 2.44
58 59 0.537143 ATCTCCAACAGGCGCACAAA 60.537 50.000 10.83 0.00 0.00 2.83
59 60 0.323302 TATCTCCAACAGGCGCACAA 59.677 50.000 10.83 0.00 0.00 3.33
60 61 0.391130 GTATCTCCAACAGGCGCACA 60.391 55.000 10.83 0.00 0.00 4.57
61 62 0.108138 AGTATCTCCAACAGGCGCAC 60.108 55.000 10.83 0.00 0.00 5.34
62 63 0.175760 GAGTATCTCCAACAGGCGCA 59.824 55.000 10.83 0.00 0.00 6.09
63 64 2.979130 GAGTATCTCCAACAGGCGC 58.021 57.895 0.00 0.00 0.00 6.53
75 76 9.221933 TCGTCAAGAGATAAGGATAAGAGTATC 57.778 37.037 0.00 0.00 36.18 2.24
93 94 0.174389 GCTGATGCCTCTCGTCAAGA 59.826 55.000 0.00 0.00 40.00 3.02
94 95 2.675519 GCTGATGCCTCTCGTCAAG 58.324 57.895 0.00 0.00 40.00 3.02
95 96 4.919653 GCTGATGCCTCTCGTCAA 57.080 55.556 0.00 0.00 40.00 3.18
105 106 1.615392 AGAAAAACCAGTGGCTGATGC 59.385 47.619 9.78 0.00 32.44 3.91
106 107 4.613622 CGTTAGAAAAACCAGTGGCTGATG 60.614 45.833 9.78 0.00 32.44 3.07
107 108 3.502211 CGTTAGAAAAACCAGTGGCTGAT 59.498 43.478 9.78 0.00 32.44 2.90
108 109 2.875933 CGTTAGAAAAACCAGTGGCTGA 59.124 45.455 9.78 0.00 32.44 4.26
109 110 2.616842 ACGTTAGAAAAACCAGTGGCTG 59.383 45.455 9.78 0.00 0.00 4.85
110 111 2.616842 CACGTTAGAAAAACCAGTGGCT 59.383 45.455 9.78 0.00 0.00 4.75
111 112 2.356695 ACACGTTAGAAAAACCAGTGGC 59.643 45.455 9.78 0.00 32.98 5.01
112 113 3.242936 CCACACGTTAGAAAAACCAGTGG 60.243 47.826 7.91 7.91 36.19 4.00
113 114 3.790789 GCCACACGTTAGAAAAACCAGTG 60.791 47.826 0.00 0.00 0.00 3.66
114 115 2.356695 GCCACACGTTAGAAAAACCAGT 59.643 45.455 0.00 0.00 0.00 4.00
115 116 2.356382 TGCCACACGTTAGAAAAACCAG 59.644 45.455 0.00 0.00 0.00 4.00
116 117 2.366533 TGCCACACGTTAGAAAAACCA 58.633 42.857 0.00 0.00 0.00 3.67
117 118 3.368495 CTTGCCACACGTTAGAAAAACC 58.632 45.455 0.00 0.00 0.00 3.27
118 119 3.181494 ACCTTGCCACACGTTAGAAAAAC 60.181 43.478 0.00 0.00 0.00 2.43
119 120 3.018149 ACCTTGCCACACGTTAGAAAAA 58.982 40.909 0.00 0.00 0.00 1.94
120 121 2.645802 ACCTTGCCACACGTTAGAAAA 58.354 42.857 0.00 0.00 0.00 2.29
121 122 2.335316 ACCTTGCCACACGTTAGAAA 57.665 45.000 0.00 0.00 0.00 2.52
122 123 3.244284 ACATACCTTGCCACACGTTAGAA 60.244 43.478 0.00 0.00 0.00 2.10
123 124 2.300723 ACATACCTTGCCACACGTTAGA 59.699 45.455 0.00 0.00 0.00 2.10
124 125 2.671396 GACATACCTTGCCACACGTTAG 59.329 50.000 0.00 0.00 0.00 2.34
125 126 2.037381 TGACATACCTTGCCACACGTTA 59.963 45.455 0.00 0.00 0.00 3.18
126 127 1.202710 TGACATACCTTGCCACACGTT 60.203 47.619 0.00 0.00 0.00 3.99
127 128 0.394938 TGACATACCTTGCCACACGT 59.605 50.000 0.00 0.00 0.00 4.49
128 129 0.796312 GTGACATACCTTGCCACACG 59.204 55.000 0.00 0.00 38.47 4.49
129 130 1.890876 TGTGACATACCTTGCCACAC 58.109 50.000 0.00 0.00 42.86 3.82
130 131 1.875996 CGTGTGACATACCTTGCCACA 60.876 52.381 0.00 0.00 45.12 4.17
131 132 0.796312 CGTGTGACATACCTTGCCAC 59.204 55.000 0.00 0.00 39.01 5.01
132 133 0.394938 ACGTGTGACATACCTTGCCA 59.605 50.000 0.00 0.00 0.00 4.92
133 134 1.076332 GACGTGTGACATACCTTGCC 58.924 55.000 0.00 0.00 0.00 4.52
134 135 1.076332 GGACGTGTGACATACCTTGC 58.924 55.000 0.00 0.00 0.00 4.01
135 136 2.743636 AGGACGTGTGACATACCTTG 57.256 50.000 0.00 0.00 0.00 3.61
136 137 3.368116 GCTTAGGACGTGTGACATACCTT 60.368 47.826 11.83 0.00 0.00 3.50
137 138 2.165845 GCTTAGGACGTGTGACATACCT 59.834 50.000 0.00 11.45 0.00 3.08
138 139 2.094390 TGCTTAGGACGTGTGACATACC 60.094 50.000 0.00 0.00 0.00 2.73
139 140 2.921754 GTGCTTAGGACGTGTGACATAC 59.078 50.000 0.00 0.00 0.00 2.39
140 141 2.094390 GGTGCTTAGGACGTGTGACATA 60.094 50.000 0.00 0.00 0.00 2.29
141 142 1.337823 GGTGCTTAGGACGTGTGACAT 60.338 52.381 0.00 0.00 0.00 3.06
142 143 0.032952 GGTGCTTAGGACGTGTGACA 59.967 55.000 0.00 0.00 0.00 3.58
143 144 0.669625 GGGTGCTTAGGACGTGTGAC 60.670 60.000 0.00 0.00 0.00 3.67
144 145 0.830444 AGGGTGCTTAGGACGTGTGA 60.830 55.000 0.00 0.00 0.00 3.58
145 146 0.670546 CAGGGTGCTTAGGACGTGTG 60.671 60.000 0.00 0.00 0.00 3.82
146 147 1.119574 ACAGGGTGCTTAGGACGTGT 61.120 55.000 0.00 5.02 0.00 4.49
147 148 0.389948 GACAGGGTGCTTAGGACGTG 60.390 60.000 0.00 0.80 0.00 4.49
148 149 0.830444 TGACAGGGTGCTTAGGACGT 60.830 55.000 0.00 0.00 0.00 4.34
149 150 0.108615 CTGACAGGGTGCTTAGGACG 60.109 60.000 0.00 0.00 0.00 4.79
150 151 1.205893 CTCTGACAGGGTGCTTAGGAC 59.794 57.143 1.81 0.00 0.00 3.85
151 152 1.561643 CTCTGACAGGGTGCTTAGGA 58.438 55.000 1.81 0.00 0.00 2.94
152 153 0.539051 CCTCTGACAGGGTGCTTAGG 59.461 60.000 0.68 0.00 38.91 2.69
161 162 0.685785 TAGCTGCTCCCTCTGACAGG 60.686 60.000 4.91 0.00 43.01 4.00
162 163 1.189752 TTAGCTGCTCCCTCTGACAG 58.810 55.000 4.91 0.00 0.00 3.51
163 164 1.644509 TTTAGCTGCTCCCTCTGACA 58.355 50.000 4.91 0.00 0.00 3.58
164 165 2.770164 TTTTAGCTGCTCCCTCTGAC 57.230 50.000 4.91 0.00 0.00 3.51
165 166 2.171448 GGATTTTAGCTGCTCCCTCTGA 59.829 50.000 4.91 0.00 0.00 3.27
166 167 2.172293 AGGATTTTAGCTGCTCCCTCTG 59.828 50.000 4.91 0.00 0.00 3.35
167 168 2.172293 CAGGATTTTAGCTGCTCCCTCT 59.828 50.000 4.91 0.00 0.00 3.69
168 169 2.570135 CAGGATTTTAGCTGCTCCCTC 58.430 52.381 4.91 0.00 0.00 4.30
169 170 1.213926 CCAGGATTTTAGCTGCTCCCT 59.786 52.381 4.91 3.59 0.00 4.20
170 171 1.064389 ACCAGGATTTTAGCTGCTCCC 60.064 52.381 4.91 1.12 0.00 4.30
171 172 2.293170 GACCAGGATTTTAGCTGCTCC 58.707 52.381 4.91 0.17 0.00 4.70
172 173 2.991250 TGACCAGGATTTTAGCTGCTC 58.009 47.619 4.91 0.00 0.00 4.26
173 174 3.285484 CATGACCAGGATTTTAGCTGCT 58.715 45.455 7.57 7.57 0.00 4.24
174 175 3.019564 ACATGACCAGGATTTTAGCTGC 58.980 45.455 0.00 0.00 0.00 5.25
175 176 5.431765 AGTACATGACCAGGATTTTAGCTG 58.568 41.667 0.00 0.00 0.00 4.24
176 177 5.189736 TGAGTACATGACCAGGATTTTAGCT 59.810 40.000 0.00 0.00 0.00 3.32
177 178 5.428253 TGAGTACATGACCAGGATTTTAGC 58.572 41.667 0.00 0.00 0.00 3.09
192 193 6.040842 AGTGTTTTTCTTTGCCATGAGTACAT 59.959 34.615 0.00 0.00 37.19 2.29
193 194 5.359576 AGTGTTTTTCTTTGCCATGAGTACA 59.640 36.000 0.00 0.00 0.00 2.90
194 195 5.831997 AGTGTTTTTCTTTGCCATGAGTAC 58.168 37.500 0.00 0.00 0.00 2.73
195 196 5.009610 GGAGTGTTTTTCTTTGCCATGAGTA 59.990 40.000 0.00 0.00 0.00 2.59
196 197 4.202151 GGAGTGTTTTTCTTTGCCATGAGT 60.202 41.667 0.00 0.00 0.00 3.41
197 198 4.301628 GGAGTGTTTTTCTTTGCCATGAG 58.698 43.478 0.00 0.00 0.00 2.90
198 199 3.243367 CGGAGTGTTTTTCTTTGCCATGA 60.243 43.478 0.00 0.00 0.00 3.07
199 200 3.052036 CGGAGTGTTTTTCTTTGCCATG 58.948 45.455 0.00 0.00 0.00 3.66
200 201 2.693074 ACGGAGTGTTTTTCTTTGCCAT 59.307 40.909 0.00 0.00 42.51 4.40
201 202 2.096248 ACGGAGTGTTTTTCTTTGCCA 58.904 42.857 0.00 0.00 42.51 4.92
202 203 2.863401 ACGGAGTGTTTTTCTTTGCC 57.137 45.000 0.00 0.00 42.51 4.52
216 217 0.096976 CGCAGTTTTATGGCACGGAG 59.903 55.000 0.00 0.00 0.00 4.63
217 218 1.302383 CCGCAGTTTTATGGCACGGA 61.302 55.000 3.10 0.00 41.61 4.69
218 219 1.136565 CCGCAGTTTTATGGCACGG 59.863 57.895 0.00 0.00 0.00 4.94
219 220 1.514014 GCCGCAGTTTTATGGCACG 60.514 57.895 0.00 0.00 46.76 5.34
220 221 4.476361 GCCGCAGTTTTATGGCAC 57.524 55.556 0.00 0.00 46.76 5.01
222 223 0.249031 GATGGCCGCAGTTTTATGGC 60.249 55.000 0.00 0.00 46.82 4.40
223 224 1.102154 TGATGGCCGCAGTTTTATGG 58.898 50.000 0.00 0.00 0.00 2.74
224 225 2.923020 GTTTGATGGCCGCAGTTTTATG 59.077 45.455 0.00 0.00 0.00 1.90
225 226 2.560542 TGTTTGATGGCCGCAGTTTTAT 59.439 40.909 0.00 0.00 0.00 1.40
226 227 1.957177 TGTTTGATGGCCGCAGTTTTA 59.043 42.857 0.00 0.00 0.00 1.52
227 228 0.749649 TGTTTGATGGCCGCAGTTTT 59.250 45.000 0.00 0.00 0.00 2.43
228 229 0.749649 TTGTTTGATGGCCGCAGTTT 59.250 45.000 0.00 0.00 0.00 2.66
229 230 0.031994 GTTGTTTGATGGCCGCAGTT 59.968 50.000 0.00 0.00 0.00 3.16
230 231 1.106351 TGTTGTTTGATGGCCGCAGT 61.106 50.000 0.00 0.00 0.00 4.40
231 232 0.031857 TTGTTGTTTGATGGCCGCAG 59.968 50.000 0.00 0.00 0.00 5.18
232 233 0.678395 ATTGTTGTTTGATGGCCGCA 59.322 45.000 0.00 0.00 0.00 5.69
233 234 1.070038 CATTGTTGTTTGATGGCCGC 58.930 50.000 0.00 0.00 0.00 6.53
234 235 2.721274 TCATTGTTGTTTGATGGCCG 57.279 45.000 0.00 0.00 0.00 6.13
235 236 3.125658 GCATTCATTGTTGTTTGATGGCC 59.874 43.478 0.00 0.00 0.00 5.36
236 237 3.747010 TGCATTCATTGTTGTTTGATGGC 59.253 39.130 0.00 0.00 0.00 4.40
237 238 5.064198 GGATGCATTCATTGTTGTTTGATGG 59.936 40.000 0.00 0.00 31.96 3.51
238 239 5.639931 TGGATGCATTCATTGTTGTTTGATG 59.360 36.000 2.63 0.00 31.96 3.07
239 240 5.795972 TGGATGCATTCATTGTTGTTTGAT 58.204 33.333 2.63 0.00 31.96 2.57
240 241 5.211174 TGGATGCATTCATTGTTGTTTGA 57.789 34.783 2.63 0.00 31.96 2.69
241 242 5.064198 GGATGGATGCATTCATTGTTGTTTG 59.936 40.000 21.57 0.00 31.96 2.93
242 243 5.180271 GGATGGATGCATTCATTGTTGTTT 58.820 37.500 21.57 0.00 31.96 2.83
243 244 4.223255 TGGATGGATGCATTCATTGTTGTT 59.777 37.500 21.57 0.00 31.96 2.83
244 245 3.770388 TGGATGGATGCATTCATTGTTGT 59.230 39.130 21.57 0.00 31.96 3.32
245 246 4.142026 ACTGGATGGATGCATTCATTGTTG 60.142 41.667 21.57 13.86 31.96 3.33
246 247 4.028131 ACTGGATGGATGCATTCATTGTT 58.972 39.130 21.57 0.00 31.96 2.83
247 248 3.638860 ACTGGATGGATGCATTCATTGT 58.361 40.909 21.57 16.62 31.96 2.71
248 249 4.368315 CAACTGGATGGATGCATTCATTG 58.632 43.478 21.57 16.05 31.96 2.82
249 250 3.181469 GCAACTGGATGGATGCATTCATT 60.181 43.478 21.57 3.37 38.63 2.57
250 251 2.364324 GCAACTGGATGGATGCATTCAT 59.636 45.455 20.83 20.83 38.63 2.57
251 252 1.752498 GCAACTGGATGGATGCATTCA 59.248 47.619 10.88 10.88 38.63 2.57
252 253 1.752498 TGCAACTGGATGGATGCATTC 59.248 47.619 0.00 0.00 43.32 2.67
253 254 1.855295 TGCAACTGGATGGATGCATT 58.145 45.000 0.00 0.00 43.32 3.56
254 255 3.600187 TGCAACTGGATGGATGCAT 57.400 47.368 0.00 0.00 43.32 3.96
256 257 1.610522 GGTATGCAACTGGATGGATGC 59.389 52.381 0.00 0.00 39.22 3.91
257 258 2.233271 GGGTATGCAACTGGATGGATG 58.767 52.381 0.00 0.00 33.15 3.51
258 259 1.852309 TGGGTATGCAACTGGATGGAT 59.148 47.619 0.00 0.00 35.41 3.41
259 260 1.294041 TGGGTATGCAACTGGATGGA 58.706 50.000 0.00 0.00 0.00 3.41
260 261 2.369983 ATGGGTATGCAACTGGATGG 57.630 50.000 0.00 0.00 0.00 3.51
261 262 3.817084 CACTATGGGTATGCAACTGGATG 59.183 47.826 0.00 0.00 0.00 3.51
262 263 3.716353 TCACTATGGGTATGCAACTGGAT 59.284 43.478 0.00 0.00 0.00 3.41
263 264 3.111484 TCACTATGGGTATGCAACTGGA 58.889 45.455 0.00 0.00 0.00 3.86
264 265 3.118261 AGTCACTATGGGTATGCAACTGG 60.118 47.826 0.00 0.00 0.00 4.00
265 266 3.873361 CAGTCACTATGGGTATGCAACTG 59.127 47.826 0.00 0.00 0.00 3.16
266 267 3.118261 CCAGTCACTATGGGTATGCAACT 60.118 47.826 0.00 0.00 33.94 3.16
267 268 3.206150 CCAGTCACTATGGGTATGCAAC 58.794 50.000 0.00 0.00 33.94 4.17
268 269 2.843730 ACCAGTCACTATGGGTATGCAA 59.156 45.455 0.00 0.00 42.48 4.08
269 270 2.170397 CACCAGTCACTATGGGTATGCA 59.830 50.000 0.00 0.00 42.48 3.96
270 271 2.485479 CCACCAGTCACTATGGGTATGC 60.485 54.545 0.00 0.00 42.48 3.14
271 272 3.038280 TCCACCAGTCACTATGGGTATG 58.962 50.000 7.32 0.00 42.48 2.39
272 273 3.414759 TCCACCAGTCACTATGGGTAT 57.585 47.619 7.32 0.00 42.48 2.73
273 274 2.835764 GTTCCACCAGTCACTATGGGTA 59.164 50.000 7.32 0.00 42.48 3.69
274 275 1.628846 GTTCCACCAGTCACTATGGGT 59.371 52.381 7.32 0.00 42.48 4.51
275 276 1.628340 TGTTCCACCAGTCACTATGGG 59.372 52.381 7.32 0.00 42.48 4.00
276 277 2.699954 GTGTTCCACCAGTCACTATGG 58.300 52.381 1.30 1.30 43.87 2.74
277 278 2.337583 CGTGTTCCACCAGTCACTATG 58.662 52.381 0.00 0.00 0.00 2.23
278 279 1.337823 GCGTGTTCCACCAGTCACTAT 60.338 52.381 0.00 0.00 0.00 2.12
279 280 0.032952 GCGTGTTCCACCAGTCACTA 59.967 55.000 0.00 0.00 0.00 2.74
280 281 1.227556 GCGTGTTCCACCAGTCACT 60.228 57.895 0.00 0.00 0.00 3.41
281 282 0.032952 TAGCGTGTTCCACCAGTCAC 59.967 55.000 0.00 0.00 0.00 3.67
282 283 0.317160 CTAGCGTGTTCCACCAGTCA 59.683 55.000 0.00 0.00 0.00 3.41
283 284 1.014564 GCTAGCGTGTTCCACCAGTC 61.015 60.000 0.00 0.00 0.00 3.51
284 285 1.004918 GCTAGCGTGTTCCACCAGT 60.005 57.895 0.00 0.00 0.00 4.00
285 286 0.320771 AAGCTAGCGTGTTCCACCAG 60.321 55.000 9.55 0.00 0.00 4.00
286 287 0.320421 GAAGCTAGCGTGTTCCACCA 60.320 55.000 8.23 0.00 0.00 4.17
287 288 1.019805 GGAAGCTAGCGTGTTCCACC 61.020 60.000 22.86 8.34 39.74 4.61
288 289 1.019805 GGGAAGCTAGCGTGTTCCAC 61.020 60.000 26.68 16.59 41.45 4.02
289 290 1.295423 GGGAAGCTAGCGTGTTCCA 59.705 57.895 26.68 0.00 41.45 3.53
290 291 0.321298 TTGGGAAGCTAGCGTGTTCC 60.321 55.000 20.71 20.71 39.31 3.62
291 292 0.796927 GTTGGGAAGCTAGCGTGTTC 59.203 55.000 8.23 7.28 0.00 3.18
292 293 0.949105 CGTTGGGAAGCTAGCGTGTT 60.949 55.000 8.23 0.00 0.00 3.32
293 294 1.374252 CGTTGGGAAGCTAGCGTGT 60.374 57.895 8.23 0.00 0.00 4.49
294 295 1.080093 TCGTTGGGAAGCTAGCGTG 60.080 57.895 8.23 0.00 0.00 5.34
295 296 1.080025 GTCGTTGGGAAGCTAGCGT 60.080 57.895 9.55 5.81 0.00 5.07
296 297 0.460284 ATGTCGTTGGGAAGCTAGCG 60.460 55.000 9.55 0.00 0.00 4.26
297 298 2.159085 AGTATGTCGTTGGGAAGCTAGC 60.159 50.000 6.62 6.62 0.00 3.42
298 299 3.130516 TCAGTATGTCGTTGGGAAGCTAG 59.869 47.826 0.00 0.00 37.40 3.42
299 300 3.093814 TCAGTATGTCGTTGGGAAGCTA 58.906 45.455 0.00 0.00 37.40 3.32
300 301 1.899814 TCAGTATGTCGTTGGGAAGCT 59.100 47.619 0.00 0.00 37.40 3.74
301 302 2.380084 TCAGTATGTCGTTGGGAAGC 57.620 50.000 0.00 0.00 37.40 3.86
302 303 2.666508 CGTTCAGTATGTCGTTGGGAAG 59.333 50.000 0.00 0.00 37.40 3.46
303 304 2.679450 CGTTCAGTATGTCGTTGGGAA 58.321 47.619 0.00 0.00 37.40 3.97
304 305 1.670674 GCGTTCAGTATGTCGTTGGGA 60.671 52.381 0.00 0.00 37.03 4.37
305 306 0.719465 GCGTTCAGTATGTCGTTGGG 59.281 55.000 0.00 0.00 37.03 4.12
306 307 1.424403 TGCGTTCAGTATGTCGTTGG 58.576 50.000 0.00 0.00 37.03 3.77
307 308 3.025254 CATGCGTTCAGTATGTCGTTG 57.975 47.619 0.00 0.00 38.02 4.10
313 314 1.328680 GCAGGACATGCGTTCAGTATG 59.671 52.381 0.00 0.00 46.99 2.39
314 315 1.656652 GCAGGACATGCGTTCAGTAT 58.343 50.000 0.00 0.00 46.99 2.12
315 316 3.137484 GCAGGACATGCGTTCAGTA 57.863 52.632 0.00 0.00 46.99 2.74
316 317 3.972227 GCAGGACATGCGTTCAGT 58.028 55.556 0.00 0.00 46.99 3.41
324 325 2.306341 AAGATCGTGAGCAGGACATG 57.694 50.000 0.00 0.00 0.00 3.21
325 326 3.005554 CAAAAGATCGTGAGCAGGACAT 58.994 45.455 0.00 0.00 0.00 3.06
326 327 2.416747 CAAAAGATCGTGAGCAGGACA 58.583 47.619 0.00 0.00 0.00 4.02
327 328 1.734465 CCAAAAGATCGTGAGCAGGAC 59.266 52.381 0.00 0.00 0.00 3.85
328 329 1.945819 GCCAAAAGATCGTGAGCAGGA 60.946 52.381 0.00 0.00 0.00 3.86
329 330 0.449388 GCCAAAAGATCGTGAGCAGG 59.551 55.000 0.00 0.00 0.00 4.85
330 331 0.095935 CGCCAAAAGATCGTGAGCAG 59.904 55.000 0.00 0.00 0.00 4.24
331 332 0.320334 TCGCCAAAAGATCGTGAGCA 60.320 50.000 0.00 0.00 0.00 4.26
332 333 0.371645 CTCGCCAAAAGATCGTGAGC 59.628 55.000 0.00 0.00 0.00 4.26
333 334 0.371645 GCTCGCCAAAAGATCGTGAG 59.628 55.000 4.34 4.34 37.23 3.51
334 335 1.351430 CGCTCGCCAAAAGATCGTGA 61.351 55.000 0.00 0.00 0.00 4.35
335 336 1.059369 CGCTCGCCAAAAGATCGTG 59.941 57.895 0.00 0.00 0.00 4.35
336 337 2.740714 GCGCTCGCCAAAAGATCGT 61.741 57.895 0.00 0.00 34.56 3.73
337 338 2.021931 GCGCTCGCCAAAAGATCG 59.978 61.111 0.00 0.00 34.56 3.69
338 339 2.021931 CGCGCTCGCCAAAAGATC 59.978 61.111 5.56 0.00 37.98 2.75
339 340 3.499737 CCGCGCTCGCCAAAAGAT 61.500 61.111 5.56 0.00 37.98 2.40
340 341 4.673298 TCCGCGCTCGCCAAAAGA 62.673 61.111 5.56 0.00 37.98 2.52
341 342 3.722295 TTCCGCGCTCGCCAAAAG 61.722 61.111 5.56 0.00 37.98 2.27
342 343 4.020378 GTTCCGCGCTCGCCAAAA 62.020 61.111 5.56 0.00 37.98 2.44
343 344 4.980805 AGTTCCGCGCTCGCCAAA 62.981 61.111 5.56 0.55 37.98 3.28
348 349 4.717629 TGACCAGTTCCGCGCTCG 62.718 66.667 5.56 0.00 0.00 5.03
349 350 2.811317 CTGACCAGTTCCGCGCTC 60.811 66.667 5.56 0.00 0.00 5.03
350 351 4.379243 CCTGACCAGTTCCGCGCT 62.379 66.667 5.56 0.00 0.00 5.92
351 352 2.775032 TTACCTGACCAGTTCCGCGC 62.775 60.000 0.00 0.00 0.00 6.86
352 353 0.108329 ATTACCTGACCAGTTCCGCG 60.108 55.000 0.00 0.00 0.00 6.46
353 354 1.207329 AGATTACCTGACCAGTTCCGC 59.793 52.381 0.00 0.00 0.00 5.54
354 355 2.233922 ACAGATTACCTGACCAGTTCCG 59.766 50.000 0.00 0.00 45.78 4.30
355 356 3.983044 ACAGATTACCTGACCAGTTCC 57.017 47.619 0.00 0.00 45.78 3.62
356 357 4.003648 CCAACAGATTACCTGACCAGTTC 58.996 47.826 0.00 0.00 45.78 3.01
357 358 3.650942 TCCAACAGATTACCTGACCAGTT 59.349 43.478 0.00 0.00 45.78 3.16
358 359 3.248024 TCCAACAGATTACCTGACCAGT 58.752 45.455 0.00 0.00 45.78 4.00
359 360 3.981071 TCCAACAGATTACCTGACCAG 57.019 47.619 0.00 0.00 45.78 4.00
360 361 4.927267 ATTCCAACAGATTACCTGACCA 57.073 40.909 0.00 0.00 45.78 4.02
361 362 7.201821 CCAATAATTCCAACAGATTACCTGACC 60.202 40.741 0.00 0.00 45.78 4.02
362 363 7.201821 CCCAATAATTCCAACAGATTACCTGAC 60.202 40.741 0.00 0.00 45.78 3.51
363 364 6.833416 CCCAATAATTCCAACAGATTACCTGA 59.167 38.462 0.00 0.00 45.78 3.86
365 366 5.598417 GCCCAATAATTCCAACAGATTACCT 59.402 40.000 0.00 0.00 0.00 3.08
366 367 5.362430 TGCCCAATAATTCCAACAGATTACC 59.638 40.000 0.00 0.00 0.00 2.85
367 368 6.463995 TGCCCAATAATTCCAACAGATTAC 57.536 37.500 0.00 0.00 0.00 1.89
368 369 8.637986 GTTATGCCCAATAATTCCAACAGATTA 58.362 33.333 0.00 0.00 33.32 1.75
369 370 7.418942 GGTTATGCCCAATAATTCCAACAGATT 60.419 37.037 0.00 0.00 33.32 2.40
370 371 6.041979 GGTTATGCCCAATAATTCCAACAGAT 59.958 38.462 0.00 0.00 33.32 2.90
501 502 3.546020 GCGTGATAAAACAGCGCATACAT 60.546 43.478 11.47 0.00 46.23 2.29
558 559 6.093495 TCACACGAAATGTTCAGTTTCTTCTT 59.907 34.615 0.00 0.00 40.64 2.52
574 575 2.285950 GCGCACTAAAACTCACACGAAA 60.286 45.455 0.30 0.00 0.00 3.46
647 649 4.899352 AGTAGAAGAGAAACCAGTGCAT 57.101 40.909 0.00 0.00 0.00 3.96
653 655 6.407202 GCCTTCATTAGTAGAAGAGAAACCA 58.593 40.000 4.61 0.00 44.00 3.67
697 699 9.915629 ACAATAAAGAAGCGACCTCTTATATAG 57.084 33.333 0.00 0.00 0.00 1.31
892 894 1.016130 AAGATTCCAGCAGTCGCGTG 61.016 55.000 5.77 0.00 45.49 5.34
943 945 1.300388 CGTTGGGGAACTCGTCGTT 60.300 57.895 0.00 0.00 38.91 3.85
1213 1216 5.575019 CATTTCCCCGTTTAGTTTAATCCG 58.425 41.667 0.00 0.00 0.00 4.18
1231 1234 9.598517 TTGGATTGTTGAATAATTAGGCATTTC 57.401 29.630 0.00 0.00 0.00 2.17
1284 1287 2.747396 TTGCAGCAAAAGCAATAGGG 57.253 45.000 4.99 0.00 46.13 3.53
1315 1318 0.893270 TTGACGCCCTCAAATGGTGG 60.893 55.000 0.00 0.00 35.84 4.61
1332 1335 1.933853 GCACGCCACCTCTTATAGTTG 59.066 52.381 0.00 0.00 0.00 3.16
1530 1535 3.738982 CGCATCCCACATATCTTTACCA 58.261 45.455 0.00 0.00 0.00 3.25
1888 1893 4.038642 TCTCTTTTGTACCAAATTGGCACC 59.961 41.667 12.67 0.50 42.67 5.01
2163 2169 5.370289 TGGTAGGAAATTTACCATACCCGAT 59.630 40.000 13.66 0.00 44.20 4.18
2196 2202 5.191522 TCCACCAATCTGGAGAATGACATAA 59.808 40.000 0.00 0.00 40.96 1.90
2378 2384 0.512952 GCTGCACGTTCTTCAATCGT 59.487 50.000 0.00 0.00 38.34 3.73
2410 2416 5.217895 ACCGCTGACGAGATTTTTATTTC 57.782 39.130 0.00 0.00 43.93 2.17
2697 2704 4.499696 GCACACAAACTTGGCACTTAGAAT 60.500 41.667 0.00 0.00 0.00 2.40
3073 3081 3.850508 GGCAACCCCGTTTGACTT 58.149 55.556 0.00 0.00 31.08 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.