Multiple sequence alignment - TraesCS7A01G507200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G507200 chr7A 100.000 3089 0 0 1 3089 694254260 694251172 0.000000e+00 5705.0
1 TraesCS7A01G507200 chr7A 85.153 2216 254 38 1 2184 694196542 694198714 0.000000e+00 2200.0
2 TraesCS7A01G507200 chr7A 84.974 2123 254 33 1 2106 694331812 694329738 0.000000e+00 2093.0
3 TraesCS7A01G507200 chr7A 83.592 2127 255 40 1 2094 694358100 694356035 0.000000e+00 1908.0
4 TraesCS7A01G507200 chr7A 83.826 1218 157 19 947 2144 694421473 694420276 0.000000e+00 1122.0
5 TraesCS7A01G507200 chr7A 79.869 611 88 16 1448 2051 694124581 694125163 6.160000e-112 414.0
6 TraesCS7A01G507200 chr7D 87.977 2229 198 33 1 2201 602664356 602662170 0.000000e+00 2567.0
7 TraesCS7A01G507200 chr7D 83.546 2115 274 32 2 2087 602751405 602749336 0.000000e+00 1910.0
8 TraesCS7A01G507200 chr7D 83.193 2136 271 34 1 2106 602723468 602721391 0.000000e+00 1875.0
9 TraesCS7A01G507200 chr7D 84.066 1638 200 31 1 1624 602673467 602671877 0.000000e+00 1522.0
10 TraesCS7A01G507200 chr7D 86.520 408 55 0 2482 2889 602658931 602658524 1.690000e-122 449.0
11 TraesCS7A01G507200 chr7D 91.500 200 10 5 2888 3086 602638642 602638449 5.080000e-68 268.0
12 TraesCS7A01G507200 chr7D 78.500 200 37 4 2672 2865 215061650 215061849 3.230000e-25 126.0
13 TraesCS7A01G507200 chr7D 83.846 130 15 4 2962 3086 602433961 602433833 5.410000e-23 119.0
14 TraesCS7A01G507200 chr7D 81.373 102 14 5 2968 3068 602299417 602299320 9.180000e-11 78.7
15 TraesCS7A01G507200 chr7B 85.846 2162 225 37 1 2128 683105844 683107958 0.000000e+00 2222.0
16 TraesCS7A01G507200 chr7B 84.388 2165 250 44 1 2132 682842282 682844391 0.000000e+00 2045.0
17 TraesCS7A01G507200 chr7B 82.994 2111 277 37 2 2084 683243694 683241638 0.000000e+00 1834.0
18 TraesCS7A01G507200 chr7B 82.949 2123 270 41 1 2091 683231391 683229329 0.000000e+00 1831.0
19 TraesCS7A01G507200 chr7B 89.323 1433 131 14 776 2201 683168444 683167027 0.000000e+00 1779.0
20 TraesCS7A01G507200 chr7B 86.204 1428 167 11 783 2195 683151371 683152783 0.000000e+00 1519.0
21 TraesCS7A01G507200 chr7B 79.797 688 96 24 80 755 683150717 683151373 7.800000e-126 460.0
22 TraesCS7A01G507200 chr7B 82.883 111 14 5 2198 2303 731279711 731279821 9.120000e-16 95.3
23 TraesCS7A01G507200 chr7B 81.651 109 10 7 2969 3072 682889017 682888914 7.100000e-12 82.4
24 TraesCS7A01G507200 chr5A 81.361 2087 297 53 47 2091 110354301 110352265 0.000000e+00 1615.0
25 TraesCS7A01G507200 chr5D 81.046 2084 309 46 47 2091 107553793 107551757 0.000000e+00 1581.0
26 TraesCS7A01G507200 chr5D 87.963 108 7 4 2197 2298 59205541 59205648 4.180000e-24 122.0
27 TraesCS7A01G507200 chr5D 93.590 78 4 1 2198 2274 44119050 44118973 7.000000e-22 115.0
28 TraesCS7A01G507200 chr5D 94.667 75 3 1 2201 2274 377830426 377830352 7.000000e-22 115.0
29 TraesCS7A01G507200 chr5B 81.213 2012 296 41 117 2091 116831275 116829309 0.000000e+00 1546.0
30 TraesCS7A01G507200 chr6D 81.407 199 34 3 2672 2867 60122436 60122238 3.190000e-35 159.0
31 TraesCS7A01G507200 chr3B 95.946 74 2 1 2202 2274 22647336 22647409 5.410000e-23 119.0
32 TraesCS7A01G507200 chr3B 84.884 86 13 0 2774 2859 41191886 41191801 1.530000e-13 87.9
33 TraesCS7A01G507200 chr1A 95.890 73 2 1 2203 2274 590292656 590292584 1.950000e-22 117.0
34 TraesCS7A01G507200 chr3D 94.667 75 3 1 2201 2274 16614438 16614512 7.000000e-22 115.0
35 TraesCS7A01G507200 chr2A 94.667 75 3 1 2201 2274 454744609 454744535 7.000000e-22 115.0
36 TraesCS7A01G507200 chr2B 89.655 87 6 3 2190 2274 160674835 160674750 1.170000e-19 108.0
37 TraesCS7A01G507200 chr4D 77.551 196 29 7 2672 2864 441054344 441054161 1.520000e-18 104.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G507200 chr7A 694251172 694254260 3088 True 5705.0 5705 100.0000 1 3089 1 chr7A.!!$R1 3088
1 TraesCS7A01G507200 chr7A 694196542 694198714 2172 False 2200.0 2200 85.1530 1 2184 1 chr7A.!!$F2 2183
2 TraesCS7A01G507200 chr7A 694329738 694331812 2074 True 2093.0 2093 84.9740 1 2106 1 chr7A.!!$R2 2105
3 TraesCS7A01G507200 chr7A 694356035 694358100 2065 True 1908.0 1908 83.5920 1 2094 1 chr7A.!!$R3 2093
4 TraesCS7A01G507200 chr7A 694420276 694421473 1197 True 1122.0 1122 83.8260 947 2144 1 chr7A.!!$R4 1197
5 TraesCS7A01G507200 chr7A 694124581 694125163 582 False 414.0 414 79.8690 1448 2051 1 chr7A.!!$F1 603
6 TraesCS7A01G507200 chr7D 602749336 602751405 2069 True 1910.0 1910 83.5460 2 2087 1 chr7D.!!$R6 2085
7 TraesCS7A01G507200 chr7D 602721391 602723468 2077 True 1875.0 1875 83.1930 1 2106 1 chr7D.!!$R5 2105
8 TraesCS7A01G507200 chr7D 602671877 602673467 1590 True 1522.0 1522 84.0660 1 1624 1 chr7D.!!$R4 1623
9 TraesCS7A01G507200 chr7D 602658524 602664356 5832 True 1508.0 2567 87.2485 1 2889 2 chr7D.!!$R7 2888
10 TraesCS7A01G507200 chr7B 683105844 683107958 2114 False 2222.0 2222 85.8460 1 2128 1 chr7B.!!$F2 2127
11 TraesCS7A01G507200 chr7B 682842282 682844391 2109 False 2045.0 2045 84.3880 1 2132 1 chr7B.!!$F1 2131
12 TraesCS7A01G507200 chr7B 683241638 683243694 2056 True 1834.0 1834 82.9940 2 2084 1 chr7B.!!$R4 2082
13 TraesCS7A01G507200 chr7B 683229329 683231391 2062 True 1831.0 1831 82.9490 1 2091 1 chr7B.!!$R3 2090
14 TraesCS7A01G507200 chr7B 683167027 683168444 1417 True 1779.0 1779 89.3230 776 2201 1 chr7B.!!$R2 1425
15 TraesCS7A01G507200 chr7B 683150717 683152783 2066 False 989.5 1519 83.0005 80 2195 2 chr7B.!!$F4 2115
16 TraesCS7A01G507200 chr5A 110352265 110354301 2036 True 1615.0 1615 81.3610 47 2091 1 chr5A.!!$R1 2044
17 TraesCS7A01G507200 chr5D 107551757 107553793 2036 True 1581.0 1581 81.0460 47 2091 1 chr5D.!!$R2 2044
18 TraesCS7A01G507200 chr5B 116829309 116831275 1966 True 1546.0 1546 81.2130 117 2091 1 chr5B.!!$R1 1974

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
413 433 0.036952 CACTCTTGGTGGCTCATCGT 60.037 55.0 0.0 0.0 41.9 3.73 F
1103 1228 0.038251 GGTCATCTCACACTCACGCA 60.038 55.0 0.0 0.0 0.0 5.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1215 1341 0.321034 TGCGATGCTTCAGTCTGCTT 60.321 50.0 0.0 0.0 0.0 3.91 R
2994 6117 0.108138 CACATCCTCCCTGTTCCGAC 60.108 60.0 0.0 0.0 0.0 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
67 68 4.108299 ACCGGCGATGCATTCCCA 62.108 61.111 9.30 0.00 0.00 4.37
217 224 3.028850 CACCACCTTCTCCTTCCGTATA 58.971 50.000 0.00 0.00 0.00 1.47
387 407 0.038892 GCCGTGGAGTTCGACACTTA 60.039 55.000 2.87 0.00 35.01 2.24
399 419 1.343465 CGACACTTACCCCAACACTCT 59.657 52.381 0.00 0.00 0.00 3.24
400 420 2.224209 CGACACTTACCCCAACACTCTT 60.224 50.000 0.00 0.00 0.00 2.85
401 421 3.139077 GACACTTACCCCAACACTCTTG 58.861 50.000 0.00 0.00 0.00 3.02
412 432 2.759783 CACTCTTGGTGGCTCATCG 58.240 57.895 0.00 0.00 41.90 3.84
413 433 0.036952 CACTCTTGGTGGCTCATCGT 60.037 55.000 0.00 0.00 41.90 3.73
414 434 1.204704 CACTCTTGGTGGCTCATCGTA 59.795 52.381 0.00 0.00 41.90 3.43
415 435 1.204941 ACTCTTGGTGGCTCATCGTAC 59.795 52.381 0.00 0.00 0.00 3.67
416 436 1.478510 CTCTTGGTGGCTCATCGTACT 59.521 52.381 0.00 0.00 0.00 2.73
417 437 2.688446 CTCTTGGTGGCTCATCGTACTA 59.312 50.000 0.00 0.00 0.00 1.82
418 438 2.688446 TCTTGGTGGCTCATCGTACTAG 59.312 50.000 0.00 0.00 0.00 2.57
419 439 0.744874 TGGTGGCTCATCGTACTAGC 59.255 55.000 0.00 0.00 35.47 3.42
420 440 1.033574 GGTGGCTCATCGTACTAGCT 58.966 55.000 0.00 0.00 36.48 3.32
421 441 2.228059 GGTGGCTCATCGTACTAGCTA 58.772 52.381 0.00 0.00 36.48 3.32
422 442 2.030981 GGTGGCTCATCGTACTAGCTAC 60.031 54.545 11.69 11.69 44.30 3.58
423 443 2.617308 GTGGCTCATCGTACTAGCTACA 59.383 50.000 13.88 1.85 44.40 2.74
424 444 2.617308 TGGCTCATCGTACTAGCTACAC 59.383 50.000 0.00 0.00 36.48 2.90
550 579 1.238439 ATGAAAACCGCCACTGTCAG 58.762 50.000 0.00 0.00 0.00 3.51
588 617 3.642778 ATGTTGGCCGTCGACCTCG 62.643 63.158 10.58 0.00 41.45 4.63
611 640 2.270850 GGCGATGCCCTGTACCAA 59.729 61.111 0.00 0.00 44.06 3.67
612 641 2.112815 GGCGATGCCCTGTACCAAC 61.113 63.158 0.00 0.00 44.06 3.77
613 642 1.078426 GCGATGCCCTGTACCAACT 60.078 57.895 0.00 0.00 0.00 3.16
614 643 0.177141 GCGATGCCCTGTACCAACTA 59.823 55.000 0.00 0.00 0.00 2.24
615 644 1.935933 CGATGCCCTGTACCAACTAC 58.064 55.000 0.00 0.00 0.00 2.73
616 645 1.472728 CGATGCCCTGTACCAACTACC 60.473 57.143 0.00 0.00 0.00 3.18
617 646 1.557832 GATGCCCTGTACCAACTACCA 59.442 52.381 0.00 0.00 0.00 3.25
618 647 1.436326 TGCCCTGTACCAACTACCAA 58.564 50.000 0.00 0.00 0.00 3.67
621 650 2.874457 GCCCTGTACCAACTACCAAGTG 60.874 54.545 0.00 0.00 35.62 3.16
692 721 4.827087 CTCTGCGGCGACTGGCAT 62.827 66.667 12.98 0.00 46.16 4.40
695 724 4.075854 TGCGGCGACTGGCATGTA 62.076 61.111 12.98 0.00 46.16 2.29
717 746 0.249238 CCGAGCTGCACCAGATACTC 60.249 60.000 1.02 0.00 32.44 2.59
828 926 6.837048 ACAAAAAGTTGGTACCAATCCTACTT 59.163 34.615 29.40 23.59 46.69 2.24
833 931 4.837093 TGGTACCAATCCTACTTTCCAG 57.163 45.455 13.60 0.00 0.00 3.86
838 936 3.850173 ACCAATCCTACTTTCCAGCCTAA 59.150 43.478 0.00 0.00 0.00 2.69
894 992 4.776322 CTGGGATGGCGGCGACAA 62.776 66.667 23.82 0.65 0.00 3.18
907 1005 3.790789 GCGGCGACAAAAGAAAAGAAGAA 60.791 43.478 12.98 0.00 0.00 2.52
916 1017 9.358872 GACAAAAGAAAAGAAGAACAAATGAGT 57.641 29.630 0.00 0.00 0.00 3.41
931 1044 7.804843 ACAAATGAGTATAGTAGTAGCGACT 57.195 36.000 4.47 4.47 39.92 4.18
932 1045 7.863666 ACAAATGAGTATAGTAGTAGCGACTC 58.136 38.462 1.52 8.92 37.10 3.36
941 1066 0.810016 AGTAGCGACTCCGAAGAACC 59.190 55.000 0.00 0.00 38.22 3.62
943 1068 0.674581 TAGCGACTCCGAAGAACCGA 60.675 55.000 0.00 0.00 38.22 4.69
963 1088 4.400961 GCCGACAGAGCTGGCCTT 62.401 66.667 3.32 0.00 43.06 4.35
1050 1175 0.898789 ACTTCGCGGAGGAGGAGAAA 60.899 55.000 20.69 0.00 0.00 2.52
1101 1226 1.466529 CGAGGTCATCTCACACTCACG 60.467 57.143 0.00 0.00 42.55 4.35
1103 1228 0.038251 GGTCATCTCACACTCACGCA 60.038 55.000 0.00 0.00 0.00 5.24
1392 1518 1.600058 TCATCCTTGGCTTGGGATCT 58.400 50.000 0.00 0.00 40.01 2.75
1398 1524 0.326595 TTGGCTTGGGATCTGCGTTA 59.673 50.000 0.00 0.00 0.00 3.18
1531 1657 1.953138 CTCATCGACCATGGCGCTC 60.953 63.158 13.04 0.44 32.64 5.03
1590 1716 0.533951 GGTACATCGACCCGGAGTTT 59.466 55.000 0.73 0.00 32.88 2.66
1605 1731 2.890961 TTTGTCAACACGCGCCGA 60.891 55.556 5.73 0.00 0.00 5.54
1686 1812 3.518998 CGGCCGGTGATCGAGACT 61.519 66.667 20.10 0.00 42.43 3.24
1806 1932 3.838271 GAGCGGTGGATGGAGCGA 61.838 66.667 0.00 0.00 39.17 4.93
1818 1944 0.956633 TGGAGCGAGTACTTGTCGTT 59.043 50.000 11.83 2.05 39.69 3.85
2081 2237 3.703001 ACGACATTCCAAGGATCAAGT 57.297 42.857 0.00 0.00 0.00 3.16
2141 2304 3.007074 TCCTTGTTACGTCCAGTATGCAA 59.993 43.478 0.00 0.00 34.88 4.08
2147 2310 5.239744 TGTTACGTCCAGTATGCAATGTTTT 59.760 36.000 0.00 0.00 34.88 2.43
2173 2338 4.157656 GGGAATGATGTTCGGTCAATTTGA 59.842 41.667 0.00 0.00 0.00 2.69
2195 2360 8.692110 TTGAATGATGTTTTAGCTGCATTAAG 57.308 30.769 1.02 0.00 0.00 1.85
2201 2366 8.763356 TGATGTTTTAGCTGCATTAAGTTTTTG 58.237 29.630 1.02 0.00 0.00 2.44
2203 2368 9.757227 ATGTTTTAGCTGCATTAAGTTTTTGTA 57.243 25.926 1.02 0.00 0.00 2.41
2204 2369 9.026074 TGTTTTAGCTGCATTAAGTTTTTGTAC 57.974 29.630 1.02 0.00 0.00 2.90
2206 2371 9.458374 TTTTAGCTGCATTAAGTTTTTGTACTC 57.542 29.630 1.02 0.00 0.00 2.59
2207 2372 6.013842 AGCTGCATTAAGTTTTTGTACTCC 57.986 37.500 1.02 0.00 0.00 3.85
2208 2373 5.770162 AGCTGCATTAAGTTTTTGTACTCCT 59.230 36.000 1.02 0.00 0.00 3.69
2210 2375 6.582672 GCTGCATTAAGTTTTTGTACTCCTTC 59.417 38.462 0.00 0.00 0.00 3.46
2211 2376 6.977213 TGCATTAAGTTTTTGTACTCCTTCC 58.023 36.000 0.00 0.00 0.00 3.46
2212 2377 6.084277 GCATTAAGTTTTTGTACTCCTTCCG 58.916 40.000 0.00 0.00 0.00 4.30
2213 2378 6.293790 GCATTAAGTTTTTGTACTCCTTCCGT 60.294 38.462 0.00 0.00 0.00 4.69
2214 2379 6.849588 TTAAGTTTTTGTACTCCTTCCGTC 57.150 37.500 0.00 0.00 0.00 4.79
2215 2380 3.736720 AGTTTTTGTACTCCTTCCGTCC 58.263 45.455 0.00 0.00 0.00 4.79
2216 2381 3.135167 AGTTTTTGTACTCCTTCCGTCCA 59.865 43.478 0.00 0.00 0.00 4.02
2217 2382 3.842007 TTTTGTACTCCTTCCGTCCAA 57.158 42.857 0.00 0.00 0.00 3.53
2218 2383 3.842007 TTTGTACTCCTTCCGTCCAAA 57.158 42.857 0.00 0.00 0.00 3.28
2220 2385 3.842007 TGTACTCCTTCCGTCCAAAAA 57.158 42.857 0.00 0.00 0.00 1.94
2222 2387 4.721132 TGTACTCCTTCCGTCCAAAAATT 58.279 39.130 0.00 0.00 0.00 1.82
2223 2388 4.758165 TGTACTCCTTCCGTCCAAAAATTC 59.242 41.667 0.00 0.00 0.00 2.17
2224 2389 4.100279 ACTCCTTCCGTCCAAAAATTCT 57.900 40.909 0.00 0.00 0.00 2.40
2226 2391 4.278419 ACTCCTTCCGTCCAAAAATTCTTG 59.722 41.667 0.00 0.00 0.00 3.02
2229 2394 4.278419 CCTTCCGTCCAAAAATTCTTGTCT 59.722 41.667 0.00 0.00 0.00 3.41
2230 2395 5.221244 CCTTCCGTCCAAAAATTCTTGTCTT 60.221 40.000 0.00 0.00 0.00 3.01
2231 2396 6.016610 CCTTCCGTCCAAAAATTCTTGTCTTA 60.017 38.462 0.00 0.00 0.00 2.10
2233 2398 7.336161 TCCGTCCAAAAATTCTTGTCTTAAA 57.664 32.000 0.00 0.00 0.00 1.52
2234 2399 7.947282 TCCGTCCAAAAATTCTTGTCTTAAAT 58.053 30.769 0.00 0.00 0.00 1.40
2235 2400 8.417884 TCCGTCCAAAAATTCTTGTCTTAAATT 58.582 29.630 0.00 0.00 0.00 1.82
2236 2401 9.040939 CCGTCCAAAAATTCTTGTCTTAAATTT 57.959 29.630 0.00 0.00 34.86 1.82
2237 2402 9.848172 CGTCCAAAAATTCTTGTCTTAAATTTG 57.152 29.630 0.00 0.00 33.95 2.32
2268 2433 9.585099 AATACGGATGTATTAAGTCACGTTTTA 57.415 29.630 0.00 0.00 46.80 1.52
2269 2434 7.515957 ACGGATGTATTAAGTCACGTTTTAG 57.484 36.000 0.00 0.00 0.00 1.85
2271 2436 7.977853 ACGGATGTATTAAGTCACGTTTTAGAT 59.022 33.333 0.00 0.00 0.00 1.98
2272 2437 8.814235 CGGATGTATTAAGTCACGTTTTAGATT 58.186 33.333 0.00 0.00 0.00 2.40
2301 2466 9.738832 TTTAAAACAAGAATTTTAAGACGAGGG 57.261 29.630 0.00 0.00 42.20 4.30
2302 2467 7.576861 AAAACAAGAATTTTAAGACGAGGGA 57.423 32.000 0.00 0.00 29.93 4.20
2303 2468 7.761038 AAACAAGAATTTTAAGACGAGGGAT 57.239 32.000 0.00 0.00 0.00 3.85
2305 2470 9.462606 AAACAAGAATTTTAAGACGAGGGATAT 57.537 29.630 0.00 0.00 0.00 1.63
2306 2471 8.438676 ACAAGAATTTTAAGACGAGGGATATG 57.561 34.615 0.00 0.00 0.00 1.78
2307 2472 7.012421 ACAAGAATTTTAAGACGAGGGATATGC 59.988 37.037 0.00 0.00 0.00 3.14
2308 2473 6.591935 AGAATTTTAAGACGAGGGATATGCA 58.408 36.000 0.00 0.00 0.00 3.96
2309 2474 7.054124 AGAATTTTAAGACGAGGGATATGCAA 58.946 34.615 0.00 0.00 0.00 4.08
2310 2475 7.556275 AGAATTTTAAGACGAGGGATATGCAAA 59.444 33.333 0.00 0.00 0.00 3.68
2311 2476 6.431198 TTTTAAGACGAGGGATATGCAAAC 57.569 37.500 0.00 0.00 0.00 2.93
2312 2477 2.225068 AGACGAGGGATATGCAAACG 57.775 50.000 0.00 1.30 0.00 3.60
2314 2479 1.859080 GACGAGGGATATGCAAACGAC 59.141 52.381 11.97 4.55 0.00 4.34
2315 2480 1.206132 ACGAGGGATATGCAAACGACA 59.794 47.619 11.97 0.00 0.00 4.35
2317 2482 2.738643 CGAGGGATATGCAAACGACAGT 60.739 50.000 0.00 0.00 0.00 3.55
2318 2483 2.866762 GAGGGATATGCAAACGACAGTC 59.133 50.000 0.00 0.00 0.00 3.51
2319 2484 2.501723 AGGGATATGCAAACGACAGTCT 59.498 45.455 0.00 0.00 0.00 3.24
2320 2485 2.866762 GGGATATGCAAACGACAGTCTC 59.133 50.000 0.00 0.00 0.00 3.36
2321 2486 3.430929 GGGATATGCAAACGACAGTCTCT 60.431 47.826 0.00 0.00 0.00 3.10
2323 2488 4.631813 GGATATGCAAACGACAGTCTCTTT 59.368 41.667 0.00 0.00 0.00 2.52
2324 2489 3.885484 ATGCAAACGACAGTCTCTTTG 57.115 42.857 12.99 12.99 0.00 2.77
2325 2490 2.627945 TGCAAACGACAGTCTCTTTGT 58.372 42.857 16.41 0.00 0.00 2.83
2328 2493 4.049186 GCAAACGACAGTCTCTTTGTAGA 58.951 43.478 16.41 0.00 0.00 2.59
2355 2876 4.565229 CGTCAAAATACGTGTATGTGAGC 58.435 43.478 0.00 0.00 38.07 4.26
2358 2879 5.959527 GTCAAAATACGTGTATGTGAGCATG 59.040 40.000 0.00 0.00 36.58 4.06
2359 2880 4.536364 AAATACGTGTATGTGAGCATGC 57.464 40.909 10.51 10.51 38.06 4.06
2360 2881 2.663826 TACGTGTATGTGAGCATGCA 57.336 45.000 21.98 0.00 43.64 3.96
2364 2885 2.314323 TGTATGTGAGCATGCACGAT 57.686 45.000 21.98 12.05 41.59 3.73
2365 2886 2.631267 TGTATGTGAGCATGCACGATT 58.369 42.857 21.98 0.00 41.59 3.34
2366 2887 3.791245 TGTATGTGAGCATGCACGATTA 58.209 40.909 21.98 3.01 41.59 1.75
2367 2888 4.379652 TGTATGTGAGCATGCACGATTAT 58.620 39.130 21.98 8.72 41.59 1.28
2368 2889 5.537188 TGTATGTGAGCATGCACGATTATA 58.463 37.500 21.98 7.75 41.59 0.98
2369 2890 4.997905 ATGTGAGCATGCACGATTATAC 57.002 40.909 21.98 7.25 41.63 1.47
2370 2891 4.058721 TGTGAGCATGCACGATTATACT 57.941 40.909 21.98 0.00 41.63 2.12
2371 2892 3.803778 TGTGAGCATGCACGATTATACTG 59.196 43.478 21.98 0.00 41.63 2.74
2372 2893 3.804325 GTGAGCATGCACGATTATACTGT 59.196 43.478 21.98 0.00 0.00 3.55
2373 2894 3.803778 TGAGCATGCACGATTATACTGTG 59.196 43.478 21.98 0.00 36.70 3.66
2374 2895 3.797039 AGCATGCACGATTATACTGTGT 58.203 40.909 21.98 0.00 36.04 3.72
2375 2896 4.191544 AGCATGCACGATTATACTGTGTT 58.808 39.130 21.98 0.00 36.04 3.32
2376 2897 5.356426 AGCATGCACGATTATACTGTGTTA 58.644 37.500 21.98 0.00 36.04 2.41
2377 2898 5.815222 AGCATGCACGATTATACTGTGTTAA 59.185 36.000 21.98 0.00 36.04 2.01
2380 2901 7.483375 GCATGCACGATTATACTGTGTTAAAAA 59.517 33.333 14.21 0.00 36.04 1.94
2404 3092 5.186198 AGACGCATGGCTATAGTTTTCTTT 58.814 37.500 0.84 0.00 0.00 2.52
2405 3093 5.648092 AGACGCATGGCTATAGTTTTCTTTT 59.352 36.000 0.84 0.00 0.00 2.27
2407 3095 7.011482 AGACGCATGGCTATAGTTTTCTTTTAG 59.989 37.037 0.84 0.00 0.00 1.85
2478 5369 1.787012 GAACCACCGACTTTCGCTAA 58.213 50.000 0.00 0.00 38.82 3.09
2490 5613 5.012328 ACTTTCGCTAAAGATCCTTCGAT 57.988 39.130 16.86 0.00 44.14 3.59
2502 5625 3.117491 TCCTTCGATCTCATGAATGGC 57.883 47.619 0.00 0.00 0.00 4.40
2503 5626 2.435437 TCCTTCGATCTCATGAATGGCA 59.565 45.455 0.00 0.00 0.00 4.92
2509 5632 0.677414 TCTCATGAATGGCAGCGCAA 60.677 50.000 11.47 0.00 0.00 4.85
2527 5650 3.743396 CGCAATCTAGTAAGGGCATCTTC 59.257 47.826 0.00 0.00 36.93 2.87
2534 5657 0.174845 TAAGGGCATCTTCGACACGG 59.825 55.000 0.00 0.00 36.93 4.94
2555 5678 0.749454 AATTGGCTCTGGCATCCGTC 60.749 55.000 0.00 0.00 38.08 4.79
2556 5679 2.615227 ATTGGCTCTGGCATCCGTCC 62.615 60.000 0.00 0.00 38.08 4.79
2557 5680 4.899239 GGCTCTGGCATCCGTCCG 62.899 72.222 0.00 0.00 40.87 4.79
2559 5682 4.147449 CTCTGGCATCCGTCCGCA 62.147 66.667 0.00 0.00 0.00 5.69
2560 5683 3.664025 CTCTGGCATCCGTCCGCAA 62.664 63.158 0.00 0.00 0.00 4.85
2564 5687 2.406616 GGCATCCGTCCGCAAACAT 61.407 57.895 0.00 0.00 0.00 2.71
2566 5689 1.429021 CATCCGTCCGCAAACATGG 59.571 57.895 0.00 0.00 0.00 3.66
2567 5690 1.024046 CATCCGTCCGCAAACATGGA 61.024 55.000 0.00 0.00 0.00 3.41
2585 5708 2.982130 GGACCAGTCCGCAGACAT 59.018 61.111 2.32 0.00 46.15 3.06
2587 5710 0.535335 GGACCAGTCCGCAGACATTA 59.465 55.000 2.32 0.00 46.15 1.90
2590 5713 3.181469 GGACCAGTCCGCAGACATTAATA 60.181 47.826 2.32 0.00 46.15 0.98
2592 5715 2.794910 CCAGTCCGCAGACATTAATACG 59.205 50.000 2.32 0.00 46.15 3.06
2597 5720 2.218759 CCGCAGACATTAATACGTGAGC 59.781 50.000 0.00 0.00 0.00 4.26
2600 5723 2.794910 CAGACATTAATACGTGAGCCGG 59.205 50.000 0.00 0.00 42.24 6.13
2608 5731 4.351938 CGTGAGCCGGTCGTCCAA 62.352 66.667 1.90 0.00 0.00 3.53
2610 5733 2.100631 GTGAGCCGGTCGTCCAATG 61.101 63.158 1.90 0.00 0.00 2.82
2615 5738 1.512156 GCCGGTCGTCCAATGTTGTT 61.512 55.000 1.90 0.00 0.00 2.83
2616 5739 0.948678 CCGGTCGTCCAATGTTGTTT 59.051 50.000 0.00 0.00 0.00 2.83
2617 5740 1.334599 CCGGTCGTCCAATGTTGTTTG 60.335 52.381 0.00 0.00 0.00 2.93
2627 5750 6.128145 CGTCCAATGTTGTTTGGTATATGTCA 60.128 38.462 3.36 0.00 45.32 3.58
2687 5810 2.560105 AAGACAGATTTTCTGCCTTGCC 59.440 45.455 5.44 0.00 43.89 4.52
2688 5811 4.004644 AAGACAGATTTTCTGCCTTGCCA 61.005 43.478 5.44 0.00 43.89 4.92
2722 5845 1.569479 GCTTCCACGCTCAAGGTGTC 61.569 60.000 0.00 0.00 36.40 3.67
2791 5914 2.307098 CTCCTCCTTGTCCATCACCTTT 59.693 50.000 0.00 0.00 0.00 3.11
2794 5917 4.010349 CCTCCTTGTCCATCACCTTTAAC 58.990 47.826 0.00 0.00 0.00 2.01
2799 5922 7.110155 TCCTTGTCCATCACCTTTAACTAATC 58.890 38.462 0.00 0.00 0.00 1.75
2871 5994 0.179111 TCGGCATCTAAAGCAGACGG 60.179 55.000 0.00 0.00 35.62 4.79
2889 6012 1.551019 GGCTTGGACCCGGTTAGAGT 61.551 60.000 0.00 0.00 0.00 3.24
2890 6013 0.108281 GCTTGGACCCGGTTAGAGTC 60.108 60.000 0.00 0.00 0.00 3.36
2891 6014 0.172803 CTTGGACCCGGTTAGAGTCG 59.827 60.000 0.00 0.00 0.00 4.18
2892 6015 1.252904 TTGGACCCGGTTAGAGTCGG 61.253 60.000 0.00 0.00 45.29 4.79
2896 6019 2.494918 CCGGTTAGAGTCGGGCAG 59.505 66.667 0.00 0.00 42.32 4.85
2897 6020 2.494918 CGGTTAGAGTCGGGCAGG 59.505 66.667 0.00 0.00 0.00 4.85
2898 6021 2.187163 GGTTAGAGTCGGGCAGGC 59.813 66.667 0.00 0.00 0.00 4.85
2899 6022 2.202756 GTTAGAGTCGGGCAGGCG 60.203 66.667 0.00 0.00 0.00 5.52
2900 6023 2.361992 TTAGAGTCGGGCAGGCGA 60.362 61.111 0.00 0.00 0.00 5.54
2901 6024 1.980232 TTAGAGTCGGGCAGGCGAA 60.980 57.895 0.00 0.00 0.00 4.70
2902 6025 2.221906 TTAGAGTCGGGCAGGCGAAC 62.222 60.000 0.00 0.00 0.00 3.95
2911 6034 3.257561 CAGGCGAACGCGAGGATG 61.258 66.667 15.93 0.00 43.06 3.51
2912 6035 3.760035 AGGCGAACGCGAGGATGT 61.760 61.111 15.93 0.00 43.06 3.06
2913 6036 3.255379 GGCGAACGCGAGGATGTC 61.255 66.667 15.93 0.00 43.06 3.06
2914 6037 2.506217 GCGAACGCGAGGATGTCA 60.506 61.111 15.93 0.00 40.82 3.58
2915 6038 2.789203 GCGAACGCGAGGATGTCAC 61.789 63.158 15.93 0.00 40.82 3.67
2916 6039 2.497092 CGAACGCGAGGATGTCACG 61.497 63.158 15.93 0.76 40.82 4.35
2917 6040 1.443872 GAACGCGAGGATGTCACGT 60.444 57.895 15.93 0.00 45.82 4.49
2918 6041 0.179181 GAACGCGAGGATGTCACGTA 60.179 55.000 15.93 0.00 43.10 3.57
2919 6042 0.455633 AACGCGAGGATGTCACGTAC 60.456 55.000 15.93 0.00 43.10 3.67
2920 6043 1.933041 CGCGAGGATGTCACGTACG 60.933 63.158 15.01 15.01 0.00 3.67
2921 6044 1.426621 GCGAGGATGTCACGTACGA 59.573 57.895 24.41 0.00 0.00 3.43
2922 6045 0.589229 GCGAGGATGTCACGTACGAG 60.589 60.000 24.41 15.18 0.00 4.18
2923 6046 0.725686 CGAGGATGTCACGTACGAGT 59.274 55.000 24.41 0.00 0.00 4.18
2924 6047 1.929169 CGAGGATGTCACGTACGAGTA 59.071 52.381 24.41 8.50 0.00 2.59
2925 6048 2.285486 CGAGGATGTCACGTACGAGTAC 60.285 54.545 24.41 16.12 0.00 2.73
2943 6066 1.275657 CGACACCGTTGTTCACTGC 59.724 57.895 0.00 0.00 35.47 4.40
2944 6067 1.151777 CGACACCGTTGTTCACTGCT 61.152 55.000 0.00 0.00 35.47 4.24
2945 6068 0.304705 GACACCGTTGTTCACTGCTG 59.695 55.000 0.00 0.00 35.47 4.41
2946 6069 1.009675 CACCGTTGTTCACTGCTGC 60.010 57.895 0.00 0.00 0.00 5.25
2947 6070 1.153168 ACCGTTGTTCACTGCTGCT 60.153 52.632 0.00 0.00 0.00 4.24
2948 6071 1.280746 CCGTTGTTCACTGCTGCTG 59.719 57.895 4.89 4.89 0.00 4.41
2949 6072 1.369689 CGTTGTTCACTGCTGCTGC 60.370 57.895 8.89 8.89 40.20 5.25
2950 6073 1.779025 CGTTGTTCACTGCTGCTGCT 61.779 55.000 17.00 0.00 40.48 4.24
2951 6074 0.317603 GTTGTTCACTGCTGCTGCTG 60.318 55.000 18.66 18.66 42.70 4.41
2952 6075 2.067091 TTGTTCACTGCTGCTGCTGC 62.067 55.000 22.51 22.51 41.07 5.25
2953 6076 2.112507 TTCACTGCTGCTGCTGCT 59.887 55.556 27.67 9.87 41.07 4.24
2954 6077 0.952497 GTTCACTGCTGCTGCTGCTA 60.952 55.000 27.67 15.49 41.07 3.49
2955 6078 0.952497 TTCACTGCTGCTGCTGCTAC 60.952 55.000 27.67 9.05 41.07 3.58
2956 6079 1.375652 CACTGCTGCTGCTGCTACT 60.376 57.895 27.67 10.72 41.07 2.57
2957 6080 0.954449 CACTGCTGCTGCTGCTACTT 60.954 55.000 27.67 10.10 41.07 2.24
2958 6081 0.954449 ACTGCTGCTGCTGCTACTTG 60.954 55.000 27.67 16.18 41.07 3.16
2959 6082 2.254703 CTGCTGCTGCTGCTACTTGC 62.255 60.000 27.67 12.50 40.48 4.01
2960 6083 2.039405 GCTGCTGCTGCTACTTGCT 61.039 57.895 22.10 0.00 43.37 3.91
2961 6084 1.794864 CTGCTGCTGCTACTTGCTG 59.205 57.895 17.00 0.00 43.37 4.41
2962 6085 1.645704 CTGCTGCTGCTACTTGCTGG 61.646 60.000 17.00 0.00 43.37 4.85
2963 6086 2.404995 GCTGCTGCTACTTGCTGGG 61.405 63.158 8.53 0.00 43.37 4.45
2964 6087 1.002868 CTGCTGCTACTTGCTGGGT 60.003 57.895 0.00 0.00 43.37 4.51
2965 6088 1.302752 TGCTGCTACTTGCTGGGTG 60.303 57.895 0.00 0.00 43.37 4.61
2966 6089 2.694760 GCTGCTACTTGCTGGGTGC 61.695 63.158 0.00 0.00 43.37 5.01
2967 6090 2.358615 TGCTACTTGCTGGGTGCG 60.359 61.111 0.00 0.00 46.63 5.34
2968 6091 2.358737 GCTACTTGCTGGGTGCGT 60.359 61.111 0.00 0.00 46.63 5.24
2969 6092 1.079405 GCTACTTGCTGGGTGCGTA 60.079 57.895 0.00 0.00 46.63 4.42
2970 6093 1.084370 GCTACTTGCTGGGTGCGTAG 61.084 60.000 0.00 0.00 46.63 3.51
2971 6094 0.530744 CTACTTGCTGGGTGCGTAGA 59.469 55.000 0.00 0.00 46.63 2.59
2972 6095 0.970640 TACTTGCTGGGTGCGTAGAA 59.029 50.000 0.00 0.00 46.63 2.10
2973 6096 0.320771 ACTTGCTGGGTGCGTAGAAG 60.321 55.000 0.00 0.00 46.63 2.85
2974 6097 1.639298 CTTGCTGGGTGCGTAGAAGC 61.639 60.000 0.00 0.00 46.63 3.86
2975 6098 3.188786 GCTGGGTGCGTAGAAGCG 61.189 66.667 0.00 0.00 40.67 4.68
2976 6099 2.261671 CTGGGTGCGTAGAAGCGT 59.738 61.111 0.00 0.00 40.67 5.07
2977 6100 2.048597 TGGGTGCGTAGAAGCGTG 60.049 61.111 0.00 0.00 40.67 5.34
2978 6101 2.813908 GGGTGCGTAGAAGCGTGG 60.814 66.667 0.00 0.00 40.67 4.94
2979 6102 2.260434 GGTGCGTAGAAGCGTGGA 59.740 61.111 0.00 0.00 40.67 4.02
2980 6103 1.805945 GGTGCGTAGAAGCGTGGAG 60.806 63.158 0.00 0.00 40.67 3.86
3006 6129 2.993264 GACCGGTCGGAACAGGGA 60.993 66.667 20.85 0.00 44.25 4.20
3007 6130 2.995574 ACCGGTCGGAACAGGGAG 60.996 66.667 16.90 0.00 44.25 4.30
3008 6131 3.771160 CCGGTCGGAACAGGGAGG 61.771 72.222 2.83 0.00 37.12 4.30
3009 6132 2.678934 CGGTCGGAACAGGGAGGA 60.679 66.667 0.00 0.00 0.00 3.71
3010 6133 2.058595 CGGTCGGAACAGGGAGGAT 61.059 63.158 0.00 0.00 0.00 3.24
3011 6134 1.522569 GGTCGGAACAGGGAGGATG 59.477 63.158 0.00 0.00 0.00 3.51
3012 6135 1.265454 GGTCGGAACAGGGAGGATGT 61.265 60.000 0.00 0.00 0.00 3.06
3013 6136 0.108138 GTCGGAACAGGGAGGATGTG 60.108 60.000 0.00 0.00 0.00 3.21
3014 6137 0.544357 TCGGAACAGGGAGGATGTGT 60.544 55.000 0.00 0.00 0.00 3.72
3015 6138 1.191535 CGGAACAGGGAGGATGTGTA 58.808 55.000 0.00 0.00 0.00 2.90
3016 6139 1.137086 CGGAACAGGGAGGATGTGTAG 59.863 57.143 0.00 0.00 0.00 2.74
3017 6140 2.467880 GGAACAGGGAGGATGTGTAGA 58.532 52.381 0.00 0.00 0.00 2.59
3018 6141 2.168728 GGAACAGGGAGGATGTGTAGAC 59.831 54.545 0.00 0.00 0.00 2.59
3019 6142 2.930109 ACAGGGAGGATGTGTAGACT 57.070 50.000 0.00 0.00 0.00 3.24
3020 6143 4.279145 GAACAGGGAGGATGTGTAGACTA 58.721 47.826 0.00 0.00 0.00 2.59
3021 6144 3.633418 ACAGGGAGGATGTGTAGACTAC 58.367 50.000 5.62 5.62 0.00 2.73
3022 6145 3.269906 ACAGGGAGGATGTGTAGACTACT 59.730 47.826 13.67 0.00 0.00 2.57
3023 6146 3.886505 CAGGGAGGATGTGTAGACTACTC 59.113 52.174 13.67 10.51 0.00 2.59
3024 6147 3.789274 AGGGAGGATGTGTAGACTACTCT 59.211 47.826 13.67 4.06 0.00 3.24
3025 6148 4.139038 GGGAGGATGTGTAGACTACTCTC 58.861 52.174 13.67 11.21 0.00 3.20
3026 6149 4.141344 GGGAGGATGTGTAGACTACTCTCT 60.141 50.000 13.67 9.04 0.00 3.10
3027 6150 5.061179 GGAGGATGTGTAGACTACTCTCTC 58.939 50.000 13.67 15.23 0.00 3.20
3028 6151 5.043737 AGGATGTGTAGACTACTCTCTCC 57.956 47.826 13.67 17.00 0.00 3.71
3029 6152 4.724798 AGGATGTGTAGACTACTCTCTCCT 59.275 45.833 21.34 21.34 33.90 3.69
3030 6153 5.192923 AGGATGTGTAGACTACTCTCTCCTT 59.807 44.000 21.34 12.81 34.47 3.36
3031 6154 5.298276 GGATGTGTAGACTACTCTCTCCTTG 59.702 48.000 13.67 0.00 0.00 3.61
3032 6155 5.500546 TGTGTAGACTACTCTCTCCTTGA 57.499 43.478 13.67 0.00 0.00 3.02
3033 6156 5.247084 TGTGTAGACTACTCTCTCCTTGAC 58.753 45.833 13.67 0.65 0.00 3.18
3034 6157 4.637091 GTGTAGACTACTCTCTCCTTGACC 59.363 50.000 13.67 0.00 0.00 4.02
3035 6158 2.993937 AGACTACTCTCTCCTTGACCG 58.006 52.381 0.00 0.00 0.00 4.79
3036 6159 2.572556 AGACTACTCTCTCCTTGACCGA 59.427 50.000 0.00 0.00 0.00 4.69
3037 6160 2.679336 GACTACTCTCTCCTTGACCGAC 59.321 54.545 0.00 0.00 0.00 4.79
3038 6161 2.018515 CTACTCTCTCCTTGACCGACC 58.981 57.143 0.00 0.00 0.00 4.79
3039 6162 0.961358 ACTCTCTCCTTGACCGACCG 60.961 60.000 0.00 0.00 0.00 4.79
3040 6163 0.677098 CTCTCTCCTTGACCGACCGA 60.677 60.000 0.00 0.00 0.00 4.69
3041 6164 0.677098 TCTCTCCTTGACCGACCGAG 60.677 60.000 0.00 0.00 0.00 4.63
3042 6165 0.961358 CTCTCCTTGACCGACCGAGT 60.961 60.000 0.00 0.00 0.00 4.18
3043 6166 0.959372 TCTCCTTGACCGACCGAGTC 60.959 60.000 0.00 0.00 34.72 3.36
3056 6179 4.357947 GAGTCGCTGCCGTGTGGA 62.358 66.667 0.00 0.00 37.49 4.02
3057 6180 3.858868 GAGTCGCTGCCGTGTGGAA 62.859 63.158 0.00 0.00 37.49 3.53
3058 6181 3.414700 GTCGCTGCCGTGTGGAAG 61.415 66.667 0.00 0.00 44.92 3.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 1.212616 GGTGAAGGCGATCGATGAAG 58.787 55.000 21.57 0.00 0.00 3.02
67 68 0.737715 GCTCGAGCGTTGATGGAGTT 60.738 55.000 23.61 0.00 0.00 3.01
105 112 4.561213 CGACGCTGTACTGAATATTTGACA 59.439 41.667 3.61 0.00 0.00 3.58
106 113 4.026804 CCGACGCTGTACTGAATATTTGAC 60.027 45.833 3.61 0.00 0.00 3.18
217 224 1.371558 GCTGAGGTTGTCCGGAGTT 59.628 57.895 3.06 0.00 39.05 3.01
336 356 2.813908 CGCCTGTCCCGTTAGTGC 60.814 66.667 0.00 0.00 0.00 4.40
387 407 1.536676 CCACCAAGAGTGTTGGGGT 59.463 57.895 22.11 0.08 45.74 4.95
399 419 1.136305 GCTAGTACGATGAGCCACCAA 59.864 52.381 0.00 0.00 0.00 3.67
400 420 0.744874 GCTAGTACGATGAGCCACCA 59.255 55.000 0.00 0.00 0.00 4.17
401 421 1.033574 AGCTAGTACGATGAGCCACC 58.966 55.000 8.04 0.00 36.87 4.61
406 426 4.571176 TGTCAGTGTAGCTAGTACGATGAG 59.429 45.833 0.00 0.00 32.31 2.90
407 427 4.510571 TGTCAGTGTAGCTAGTACGATGA 58.489 43.478 0.00 0.00 33.87 2.92
408 428 4.877323 TGTCAGTGTAGCTAGTACGATG 57.123 45.455 0.00 0.00 33.87 3.84
409 429 5.123936 TGATGTCAGTGTAGCTAGTACGAT 58.876 41.667 0.00 0.00 33.87 3.73
410 430 4.510571 TGATGTCAGTGTAGCTAGTACGA 58.489 43.478 0.00 0.00 33.87 3.43
411 431 4.877323 TGATGTCAGTGTAGCTAGTACG 57.123 45.455 0.00 0.00 33.87 3.67
412 432 5.029014 CGTTGATGTCAGTGTAGCTAGTAC 58.971 45.833 0.00 0.00 0.00 2.73
413 433 4.095932 CCGTTGATGTCAGTGTAGCTAGTA 59.904 45.833 0.00 0.00 0.00 1.82
414 434 3.119459 CCGTTGATGTCAGTGTAGCTAGT 60.119 47.826 0.00 0.00 0.00 2.57
415 435 3.439293 CCGTTGATGTCAGTGTAGCTAG 58.561 50.000 0.00 0.00 0.00 3.42
416 436 2.165641 CCCGTTGATGTCAGTGTAGCTA 59.834 50.000 0.00 0.00 0.00 3.32
417 437 1.066858 CCCGTTGATGTCAGTGTAGCT 60.067 52.381 0.00 0.00 0.00 3.32
418 438 1.067142 TCCCGTTGATGTCAGTGTAGC 60.067 52.381 0.00 0.00 0.00 3.58
419 439 2.993899 GTTCCCGTTGATGTCAGTGTAG 59.006 50.000 0.00 0.00 0.00 2.74
420 440 2.289195 GGTTCCCGTTGATGTCAGTGTA 60.289 50.000 0.00 0.00 0.00 2.90
421 441 1.542547 GGTTCCCGTTGATGTCAGTGT 60.543 52.381 0.00 0.00 0.00 3.55
422 442 1.156736 GGTTCCCGTTGATGTCAGTG 58.843 55.000 0.00 0.00 0.00 3.66
423 443 0.762418 TGGTTCCCGTTGATGTCAGT 59.238 50.000 0.00 0.00 0.00 3.41
424 444 2.113860 ATGGTTCCCGTTGATGTCAG 57.886 50.000 0.00 0.00 0.00 3.51
446 466 0.179000 GGGAGTTGATGTCGATGCCT 59.821 55.000 0.00 0.00 0.00 4.75
550 579 3.695830 TCTTGGAGTCATTGTGGTACC 57.304 47.619 4.43 4.43 0.00 3.34
581 610 3.182472 ATCGCCGATGACGAGGTCG 62.182 63.158 0.00 0.00 43.74 4.79
611 640 2.151202 CGGTTGCATTCACTTGGTAGT 58.849 47.619 0.00 0.00 34.00 2.73
612 641 2.151202 ACGGTTGCATTCACTTGGTAG 58.849 47.619 0.00 0.00 0.00 3.18
613 642 2.264005 ACGGTTGCATTCACTTGGTA 57.736 45.000 0.00 0.00 0.00 3.25
614 643 1.066908 CAACGGTTGCATTCACTTGGT 59.933 47.619 8.09 0.00 0.00 3.67
615 644 1.336440 TCAACGGTTGCATTCACTTGG 59.664 47.619 15.89 0.00 0.00 3.61
616 645 2.772568 TCAACGGTTGCATTCACTTG 57.227 45.000 15.89 0.00 0.00 3.16
617 646 3.058016 CAGATCAACGGTTGCATTCACTT 60.058 43.478 15.89 0.00 0.00 3.16
618 647 2.485426 CAGATCAACGGTTGCATTCACT 59.515 45.455 15.89 5.91 0.00 3.41
621 650 2.744202 ACTCAGATCAACGGTTGCATTC 59.256 45.455 15.89 11.84 0.00 2.67
691 720 2.509336 GTGCAGCTCGGCGTACAT 60.509 61.111 6.85 0.00 36.28 2.29
692 721 4.735132 GGTGCAGCTCGGCGTACA 62.735 66.667 9.07 0.00 36.28 2.90
694 723 4.435436 CTGGTGCAGCTCGGCGTA 62.435 66.667 18.08 0.00 36.28 4.42
717 746 5.066117 CAGAGTGGAATTGAATGACCATGAG 59.934 44.000 7.42 0.00 34.87 2.90
828 926 2.200081 AGCAGAGGAATTAGGCTGGAA 58.800 47.619 0.00 0.00 32.76 3.53
833 931 4.460731 ACAAAAGAAGCAGAGGAATTAGGC 59.539 41.667 0.00 0.00 0.00 3.93
838 936 4.218312 ACCAACAAAAGAAGCAGAGGAAT 58.782 39.130 0.00 0.00 0.00 3.01
907 1005 7.041235 GGAGTCGCTACTACTATACTCATTTGT 60.041 40.741 0.00 0.00 35.56 2.83
916 1017 5.459536 TCTTCGGAGTCGCTACTACTATA 57.540 43.478 0.00 0.00 33.98 1.31
922 1035 0.810016 GGTTCTTCGGAGTCGCTACT 59.190 55.000 0.00 0.00 39.21 2.57
923 1036 0.522915 CGGTTCTTCGGAGTCGCTAC 60.523 60.000 0.00 0.00 36.13 3.58
931 1044 2.654877 GGCACTCGGTTCTTCGGA 59.345 61.111 0.00 0.00 0.00 4.55
932 1045 2.809601 CGGCACTCGGTTCTTCGG 60.810 66.667 0.00 0.00 34.75 4.30
941 1066 2.505777 CAGCTCTGTCGGCACTCG 60.506 66.667 0.00 0.00 40.90 4.18
943 1068 4.385405 GCCAGCTCTGTCGGCACT 62.385 66.667 7.12 0.00 45.52 4.40
963 1088 2.587247 GGCAGCCACACCTCTCTCA 61.587 63.158 6.55 0.00 0.00 3.27
1215 1341 0.321034 TGCGATGCTTCAGTCTGCTT 60.321 50.000 0.00 0.00 0.00 3.91
1398 1524 1.749638 CTCTCCGTGGAGGTAGCGT 60.750 63.158 15.67 0.00 42.20 5.07
1512 1638 2.969238 GCGCCATGGTCGATGAGG 60.969 66.667 26.00 3.98 33.31 3.86
1531 1657 2.540515 CTTAGTGGTATGCACTGACCG 58.459 52.381 9.15 0.00 38.69 4.79
1686 1812 1.412710 AGCGTGAAGGAAGTCTCAACA 59.587 47.619 0.00 0.00 0.00 3.33
1806 1932 1.000955 CAGAGCCCAACGACAAGTACT 59.999 52.381 0.00 0.00 0.00 2.73
2141 2304 3.673052 CGAACATCATTCCCGCAAAACAT 60.673 43.478 0.00 0.00 0.00 2.71
2147 2310 0.742990 GACCGAACATCATTCCCGCA 60.743 55.000 0.00 0.00 0.00 5.69
2173 2338 9.492973 AAAACTTAATGCAGCTAAAACATCATT 57.507 25.926 0.00 0.00 0.00 2.57
2195 2360 3.469739 TGGACGGAAGGAGTACAAAAAC 58.530 45.455 0.00 0.00 27.89 2.43
2201 2366 5.001874 AGAATTTTTGGACGGAAGGAGTAC 58.998 41.667 0.00 0.00 0.00 2.73
2203 2368 4.100279 AGAATTTTTGGACGGAAGGAGT 57.900 40.909 0.00 0.00 0.00 3.85
2204 2369 4.278419 ACAAGAATTTTTGGACGGAAGGAG 59.722 41.667 12.83 0.00 32.32 3.69
2206 2371 4.278419 AGACAAGAATTTTTGGACGGAAGG 59.722 41.667 12.83 0.00 32.32 3.46
2207 2372 5.438761 AGACAAGAATTTTTGGACGGAAG 57.561 39.130 12.83 0.00 32.32 3.46
2208 2373 5.845391 AAGACAAGAATTTTTGGACGGAA 57.155 34.783 12.83 0.00 32.32 4.30
2210 2375 8.587952 AATTTAAGACAAGAATTTTTGGACGG 57.412 30.769 12.83 0.00 32.32 4.79
2211 2376 9.848172 CAAATTTAAGACAAGAATTTTTGGACG 57.152 29.630 12.83 0.00 32.35 4.79
2236 2401 9.740239 GTGACTTAATACATCCGTATTTAGACA 57.260 33.333 14.76 12.43 44.27 3.41
2237 2402 8.899776 CGTGACTTAATACATCCGTATTTAGAC 58.100 37.037 14.76 10.62 44.27 2.59
2238 2403 8.623903 ACGTGACTTAATACATCCGTATTTAGA 58.376 33.333 14.76 0.00 44.27 2.10
2239 2404 8.792831 ACGTGACTTAATACATCCGTATTTAG 57.207 34.615 3.40 6.51 44.27 1.85
2240 2405 9.585099 AAACGTGACTTAATACATCCGTATTTA 57.415 29.630 3.40 0.00 44.27 1.40
2241 2406 8.483307 AAACGTGACTTAATACATCCGTATTT 57.517 30.769 3.40 0.00 44.27 1.40
2244 2409 8.458052 TCTAAAACGTGACTTAATACATCCGTA 58.542 33.333 0.00 0.00 0.00 4.02
2245 2410 7.315142 TCTAAAACGTGACTTAATACATCCGT 58.685 34.615 0.00 0.00 0.00 4.69
2246 2411 7.745022 TCTAAAACGTGACTTAATACATCCG 57.255 36.000 0.00 0.00 0.00 4.18
2275 2440 9.738832 CCCTCGTCTTAAAATTCTTGTTTTAAA 57.261 29.630 6.17 0.00 40.81 1.52
2276 2441 9.122779 TCCCTCGTCTTAAAATTCTTGTTTTAA 57.877 29.630 4.96 4.96 39.76 1.52
2277 2442 8.680039 TCCCTCGTCTTAAAATTCTTGTTTTA 57.320 30.769 0.00 0.00 33.62 1.52
2279 2444 7.761038 ATCCCTCGTCTTAAAATTCTTGTTT 57.239 32.000 0.00 0.00 0.00 2.83
2280 2445 8.893727 CATATCCCTCGTCTTAAAATTCTTGTT 58.106 33.333 0.00 0.00 0.00 2.83
2281 2446 7.012421 GCATATCCCTCGTCTTAAAATTCTTGT 59.988 37.037 0.00 0.00 0.00 3.16
2282 2447 7.012327 TGCATATCCCTCGTCTTAAAATTCTTG 59.988 37.037 0.00 0.00 0.00 3.02
2284 2449 6.591935 TGCATATCCCTCGTCTTAAAATTCT 58.408 36.000 0.00 0.00 0.00 2.40
2285 2450 6.861065 TGCATATCCCTCGTCTTAAAATTC 57.139 37.500 0.00 0.00 0.00 2.17
2286 2451 7.480810 GTTTGCATATCCCTCGTCTTAAAATT 58.519 34.615 0.00 0.00 0.00 1.82
2288 2453 5.064198 CGTTTGCATATCCCTCGTCTTAAAA 59.936 40.000 0.00 0.00 0.00 1.52
2289 2454 4.569162 CGTTTGCATATCCCTCGTCTTAAA 59.431 41.667 0.00 0.00 0.00 1.52
2290 2455 4.116961 CGTTTGCATATCCCTCGTCTTAA 58.883 43.478 0.00 0.00 0.00 1.85
2291 2456 3.382227 TCGTTTGCATATCCCTCGTCTTA 59.618 43.478 0.00 0.00 0.00 2.10
2294 2459 1.859080 GTCGTTTGCATATCCCTCGTC 59.141 52.381 0.00 0.00 0.00 4.20
2296 2461 1.860950 CTGTCGTTTGCATATCCCTCG 59.139 52.381 0.00 0.00 0.00 4.63
2297 2462 2.866762 GACTGTCGTTTGCATATCCCTC 59.133 50.000 0.00 0.00 0.00 4.30
2299 2464 2.866762 GAGACTGTCGTTTGCATATCCC 59.133 50.000 1.52 0.00 0.00 3.85
2301 2466 5.120830 ACAAAGAGACTGTCGTTTGCATATC 59.879 40.000 25.59 8.50 33.96 1.63
2302 2467 4.997395 ACAAAGAGACTGTCGTTTGCATAT 59.003 37.500 25.59 12.57 33.96 1.78
2303 2468 4.377021 ACAAAGAGACTGTCGTTTGCATA 58.623 39.130 25.59 0.00 33.96 3.14
2305 2470 2.627945 ACAAAGAGACTGTCGTTTGCA 58.372 42.857 25.59 0.00 33.96 4.08
2306 2471 4.049186 TCTACAAAGAGACTGTCGTTTGC 58.951 43.478 25.59 8.33 33.96 3.68
2318 2483 8.734933 CGTATTTTGACGTATCTCTACAAAGAG 58.265 37.037 0.00 0.00 42.79 2.85
2319 2484 8.610855 CGTATTTTGACGTATCTCTACAAAGA 57.389 34.615 0.00 0.00 38.04 2.52
2331 2496 8.314318 ATGCTCACATACACGTATTTTGACGTA 61.314 37.037 0.74 0.00 43.94 3.57
2343 2864 3.883779 GTGCATGCTCACATACACG 57.116 52.632 20.33 0.00 39.98 4.49
2344 2865 1.358877 TCGTGCATGCTCACATACAC 58.641 50.000 20.33 4.81 44.10 2.90
2346 2867 4.997905 ATAATCGTGCATGCTCACATAC 57.002 40.909 20.33 6.38 36.80 2.39
2349 2870 3.803778 CAGTATAATCGTGCATGCTCACA 59.196 43.478 20.33 5.03 36.80 3.58
2350 2871 3.804325 ACAGTATAATCGTGCATGCTCAC 59.196 43.478 20.33 8.76 0.00 3.51
2352 2873 3.804325 ACACAGTATAATCGTGCATGCTC 59.196 43.478 20.33 14.84 33.89 4.26
2353 2874 3.797039 ACACAGTATAATCGTGCATGCT 58.203 40.909 20.33 0.00 33.89 3.79
2355 2876 8.888332 TTTTTAACACAGTATAATCGTGCATG 57.112 30.769 0.00 0.00 33.89 4.06
2377 2898 5.897377 AAACTATAGCCATGCGTCTTTTT 57.103 34.783 0.00 0.00 0.00 1.94
2380 2901 4.770795 AGAAAACTATAGCCATGCGTCTT 58.229 39.130 0.00 0.00 0.00 3.01
2381 2902 4.408182 AGAAAACTATAGCCATGCGTCT 57.592 40.909 0.00 0.00 0.00 4.18
2382 2903 5.485662 AAAGAAAACTATAGCCATGCGTC 57.514 39.130 0.00 0.00 0.00 5.19
2383 2904 5.897377 AAAAGAAAACTATAGCCATGCGT 57.103 34.783 0.00 0.00 0.00 5.24
2384 2905 7.016361 ACTAAAAGAAAACTATAGCCATGCG 57.984 36.000 0.00 0.00 0.00 4.73
2434 3122 9.275398 TCGGAAGTTAGCTTTTCTGTTAATTAA 57.725 29.630 0.00 0.00 34.61 1.40
2435 3123 8.836268 TCGGAAGTTAGCTTTTCTGTTAATTA 57.164 30.769 0.00 0.00 34.61 1.40
2436 3124 7.739498 TCGGAAGTTAGCTTTTCTGTTAATT 57.261 32.000 0.00 0.00 34.61 1.40
2443 5334 3.813724 GTGGTTCGGAAGTTAGCTTTTCT 59.186 43.478 0.00 0.00 34.61 2.52
2450 5341 1.271656 AGTCGGTGGTTCGGAAGTTAG 59.728 52.381 0.00 0.00 0.00 2.34
2490 5613 0.677414 TTGCGCTGCCATTCATGAGA 60.677 50.000 9.73 0.00 0.00 3.27
2502 5625 1.221414 GCCCTTACTAGATTGCGCTG 58.779 55.000 9.73 0.00 0.00 5.18
2503 5626 0.830648 TGCCCTTACTAGATTGCGCT 59.169 50.000 9.73 0.00 0.00 5.92
2509 5632 4.038162 GTGTCGAAGATGCCCTTACTAGAT 59.962 45.833 0.00 0.00 40.67 1.98
2527 5650 0.443869 CAGAGCCAATTTCCGTGTCG 59.556 55.000 0.00 0.00 0.00 4.35
2534 5657 0.383231 CGGATGCCAGAGCCAATTTC 59.617 55.000 0.00 0.00 38.69 2.17
2555 5678 1.303236 TGGTCCTCCATGTTTGCGG 60.303 57.895 0.00 0.00 39.03 5.69
2556 5679 0.606401 ACTGGTCCTCCATGTTTGCG 60.606 55.000 0.00 0.00 43.43 4.85
2557 5680 1.168714 GACTGGTCCTCCATGTTTGC 58.831 55.000 0.00 0.00 43.43 3.68
2580 5703 2.429610 ACCGGCTCACGTATTAATGTCT 59.570 45.455 0.00 0.00 42.24 3.41
2583 5706 1.784856 CGACCGGCTCACGTATTAATG 59.215 52.381 0.00 0.00 42.24 1.90
2585 5708 0.810648 ACGACCGGCTCACGTATTAA 59.189 50.000 0.00 0.00 42.24 1.40
2587 5710 1.138247 GACGACCGGCTCACGTATT 59.862 57.895 14.43 0.00 42.24 1.89
2592 5715 2.100631 CATTGGACGACCGGCTCAC 61.101 63.158 0.00 0.00 39.42 3.51
2597 5720 0.948678 AAACAACATTGGACGACCGG 59.051 50.000 0.00 0.00 39.42 5.28
2608 5731 8.752005 ATTAGCTGACATATACCAAACAACAT 57.248 30.769 0.00 0.00 0.00 2.71
2669 5792 1.891150 CTGGCAAGGCAGAAAATCTGT 59.109 47.619 17.70 0.00 45.94 3.41
2687 5810 1.260033 GAAGCTCGAATTGCCGATCTG 59.740 52.381 0.00 0.00 35.54 2.90
2688 5811 1.576356 GAAGCTCGAATTGCCGATCT 58.424 50.000 0.00 0.00 36.71 2.75
2744 5867 4.821589 GGCAGAGAACGAGGCGGG 62.822 72.222 0.00 0.00 0.00 6.13
2752 5875 1.522580 GATGGAGGCGGCAGAGAAC 60.523 63.158 13.08 0.00 0.00 3.01
2791 5914 8.035165 TGTTGCAGCGATAAAAAGATTAGTTA 57.965 30.769 0.00 0.00 0.00 2.24
2794 5917 7.412853 AGATGTTGCAGCGATAAAAAGATTAG 58.587 34.615 0.00 0.00 0.00 1.73
2799 5922 5.156355 ACAAGATGTTGCAGCGATAAAAAG 58.844 37.500 1.83 0.00 37.14 2.27
2805 5928 1.667724 GCTACAAGATGTTGCAGCGAT 59.332 47.619 11.65 0.00 45.86 4.58
2826 5949 5.913637 CAAGAATGATCGTGCAAGCTATAG 58.086 41.667 0.00 0.00 0.00 1.31
2827 5950 5.912360 CAAGAATGATCGTGCAAGCTATA 57.088 39.130 0.00 0.00 0.00 1.31
2871 5994 0.108281 GACTCTAACCGGGTCCAAGC 60.108 60.000 6.32 0.00 0.00 4.01
2874 5997 1.679977 CCGACTCTAACCGGGTCCA 60.680 63.158 6.32 0.00 41.89 4.02
2885 6008 4.070552 GTTCGCCTGCCCGACTCT 62.071 66.667 0.00 0.00 36.90 3.24
2894 6017 3.257561 CATCCTCGCGTTCGCCTG 61.258 66.667 5.77 4.63 35.26 4.85
2895 6018 3.701604 GACATCCTCGCGTTCGCCT 62.702 63.158 5.77 0.00 35.26 5.52
2896 6019 3.255379 GACATCCTCGCGTTCGCC 61.255 66.667 5.77 0.00 35.26 5.54
2897 6020 2.506217 TGACATCCTCGCGTTCGC 60.506 61.111 5.77 7.14 35.26 4.70
2898 6021 2.497092 CGTGACATCCTCGCGTTCG 61.497 63.158 5.77 0.00 46.01 3.95
2899 6022 3.374330 CGTGACATCCTCGCGTTC 58.626 61.111 5.77 0.00 46.01 3.95
2903 6026 0.589229 CTCGTACGTGACATCCTCGC 60.589 60.000 16.05 0.00 35.38 5.03
2904 6027 0.725686 ACTCGTACGTGACATCCTCG 59.274 55.000 22.86 0.00 37.73 4.63
2905 6028 3.316253 GTACTCGTACGTGACATCCTC 57.684 52.381 22.86 2.88 0.00 3.71
2925 6048 1.151777 AGCAGTGAACAACGGTGTCG 61.152 55.000 6.54 0.00 36.80 4.35
2926 6049 0.304705 CAGCAGTGAACAACGGTGTC 59.695 55.000 6.54 0.72 36.80 3.67
2927 6050 1.714899 GCAGCAGTGAACAACGGTGT 61.715 55.000 0.00 0.00 40.75 4.16
2928 6051 1.009675 GCAGCAGTGAACAACGGTG 60.010 57.895 0.00 0.00 35.40 4.94
2929 6052 1.153168 AGCAGCAGTGAACAACGGT 60.153 52.632 0.00 0.00 0.00 4.83
2930 6053 1.280746 CAGCAGCAGTGAACAACGG 59.719 57.895 0.00 0.00 0.00 4.44
2931 6054 1.369689 GCAGCAGCAGTGAACAACG 60.370 57.895 0.00 0.00 41.58 4.10
2932 6055 0.317603 CAGCAGCAGCAGTGAACAAC 60.318 55.000 3.17 0.00 45.49 3.32
2933 6056 2.027325 CAGCAGCAGCAGTGAACAA 58.973 52.632 3.17 0.00 45.49 2.83
2934 6057 2.549198 GCAGCAGCAGCAGTGAACA 61.549 57.895 4.63 0.00 45.49 3.18
2935 6058 0.952497 TAGCAGCAGCAGCAGTGAAC 60.952 55.000 12.92 0.00 45.49 3.18
2936 6059 0.952497 GTAGCAGCAGCAGCAGTGAA 60.952 55.000 12.92 0.00 45.49 3.18
2937 6060 1.375140 GTAGCAGCAGCAGCAGTGA 60.375 57.895 12.92 0.00 45.49 3.41
2938 6061 0.954449 AAGTAGCAGCAGCAGCAGTG 60.954 55.000 12.92 0.00 45.49 3.66
2939 6062 0.954449 CAAGTAGCAGCAGCAGCAGT 60.954 55.000 12.92 0.00 45.49 4.40
2940 6063 1.794864 CAAGTAGCAGCAGCAGCAG 59.205 57.895 12.92 0.00 45.49 4.24
2941 6064 2.330372 GCAAGTAGCAGCAGCAGCA 61.330 57.895 12.92 0.00 45.49 4.41
2942 6065 2.484203 GCAAGTAGCAGCAGCAGC 59.516 61.111 3.17 0.46 45.49 5.25
2951 6074 1.079405 TACGCACCCAGCAAGTAGC 60.079 57.895 0.00 0.00 46.13 3.58
2952 6075 0.530744 TCTACGCACCCAGCAAGTAG 59.469 55.000 0.00 0.00 46.13 2.57
2953 6076 0.970640 TTCTACGCACCCAGCAAGTA 59.029 50.000 0.00 0.00 46.13 2.24
2954 6077 0.320771 CTTCTACGCACCCAGCAAGT 60.321 55.000 0.00 0.00 46.13 3.16
2955 6078 1.639298 GCTTCTACGCACCCAGCAAG 61.639 60.000 0.00 0.00 46.13 4.01
2956 6079 1.671054 GCTTCTACGCACCCAGCAA 60.671 57.895 0.00 0.00 46.13 3.91
2957 6080 2.047274 GCTTCTACGCACCCAGCA 60.047 61.111 0.00 0.00 46.13 4.41
2958 6081 3.188786 CGCTTCTACGCACCCAGC 61.189 66.667 0.00 0.00 40.87 4.85
2959 6082 2.094659 CACGCTTCTACGCACCCAG 61.095 63.158 0.00 0.00 36.19 4.45
2960 6083 2.048597 CACGCTTCTACGCACCCA 60.049 61.111 0.00 0.00 36.19 4.51
2961 6084 2.813908 CCACGCTTCTACGCACCC 60.814 66.667 0.00 0.00 36.19 4.61
2962 6085 1.805945 CTCCACGCTTCTACGCACC 60.806 63.158 0.00 0.00 36.19 5.01
2963 6086 2.445438 GCTCCACGCTTCTACGCAC 61.445 63.158 0.00 0.00 36.19 5.34
2964 6087 2.126071 GCTCCACGCTTCTACGCA 60.126 61.111 0.00 0.00 36.19 5.24
2965 6088 2.126071 TGCTCCACGCTTCTACGC 60.126 61.111 0.00 0.00 40.11 4.42
2966 6089 1.805945 GGTGCTCCACGCTTCTACG 60.806 63.158 0.00 0.00 40.11 3.51
2967 6090 1.448013 GGGTGCTCCACGCTTCTAC 60.448 63.158 7.20 0.00 42.71 2.59
2968 6091 2.978824 GGGTGCTCCACGCTTCTA 59.021 61.111 7.20 0.00 42.71 2.10
2969 6092 4.379243 CGGGTGCTCCACGCTTCT 62.379 66.667 7.20 0.00 43.61 2.85
2989 6112 2.993264 TCCCTGTTCCGACCGGTC 60.993 66.667 25.28 25.28 36.47 4.79
2990 6113 2.995574 CTCCCTGTTCCGACCGGT 60.996 66.667 6.92 6.92 36.47 5.28
2991 6114 3.771160 CCTCCCTGTTCCGACCGG 61.771 72.222 0.00 0.00 0.00 5.28
2992 6115 2.058595 ATCCTCCCTGTTCCGACCG 61.059 63.158 0.00 0.00 0.00 4.79
2993 6116 1.265454 ACATCCTCCCTGTTCCGACC 61.265 60.000 0.00 0.00 0.00 4.79
2994 6117 0.108138 CACATCCTCCCTGTTCCGAC 60.108 60.000 0.00 0.00 0.00 4.79
2995 6118 0.544357 ACACATCCTCCCTGTTCCGA 60.544 55.000 0.00 0.00 0.00 4.55
2996 6119 1.137086 CTACACATCCTCCCTGTTCCG 59.863 57.143 0.00 0.00 0.00 4.30
2997 6120 2.168728 GTCTACACATCCTCCCTGTTCC 59.831 54.545 0.00 0.00 0.00 3.62
2998 6121 3.100671 AGTCTACACATCCTCCCTGTTC 58.899 50.000 0.00 0.00 0.00 3.18
2999 6122 3.191888 AGTCTACACATCCTCCCTGTT 57.808 47.619 0.00 0.00 0.00 3.16
3000 6123 2.930109 AGTCTACACATCCTCCCTGT 57.070 50.000 0.00 0.00 0.00 4.00
3001 6124 3.886505 GAGTAGTCTACACATCCTCCCTG 59.113 52.174 12.54 0.00 0.00 4.45
3002 6125 3.789274 AGAGTAGTCTACACATCCTCCCT 59.211 47.826 12.54 0.00 0.00 4.20
3003 6126 4.139038 GAGAGTAGTCTACACATCCTCCC 58.861 52.174 12.54 0.00 30.97 4.30
3004 6127 5.043737 AGAGAGTAGTCTACACATCCTCC 57.956 47.826 12.54 0.00 30.97 4.30
3005 6128 5.061179 GGAGAGAGTAGTCTACACATCCTC 58.939 50.000 12.54 12.20 30.97 3.71
3006 6129 4.724798 AGGAGAGAGTAGTCTACACATCCT 59.275 45.833 19.62 19.62 34.97 3.24
3007 6130 5.043737 AGGAGAGAGTAGTCTACACATCC 57.956 47.826 12.54 15.27 30.97 3.51
3008 6131 6.037830 GTCAAGGAGAGAGTAGTCTACACATC 59.962 46.154 12.54 8.08 30.97 3.06
3009 6132 5.883673 GTCAAGGAGAGAGTAGTCTACACAT 59.116 44.000 12.54 0.00 30.97 3.21
3010 6133 5.247084 GTCAAGGAGAGAGTAGTCTACACA 58.753 45.833 12.54 0.00 30.97 3.72
3011 6134 4.637091 GGTCAAGGAGAGAGTAGTCTACAC 59.363 50.000 12.54 6.08 30.97 2.90
3012 6135 4.623409 CGGTCAAGGAGAGAGTAGTCTACA 60.623 50.000 12.54 0.00 30.97 2.74
3013 6136 3.872771 CGGTCAAGGAGAGAGTAGTCTAC 59.127 52.174 0.00 1.39 30.97 2.59
3014 6137 3.773667 TCGGTCAAGGAGAGAGTAGTCTA 59.226 47.826 0.00 0.00 30.97 2.59
3015 6138 2.572556 TCGGTCAAGGAGAGAGTAGTCT 59.427 50.000 0.00 0.00 34.86 3.24
3016 6139 2.679336 GTCGGTCAAGGAGAGAGTAGTC 59.321 54.545 0.00 0.00 0.00 2.59
3017 6140 2.618559 GGTCGGTCAAGGAGAGAGTAGT 60.619 54.545 0.00 0.00 0.00 2.73
3018 6141 2.018515 GGTCGGTCAAGGAGAGAGTAG 58.981 57.143 0.00 0.00 0.00 2.57
3019 6142 1.678123 CGGTCGGTCAAGGAGAGAGTA 60.678 57.143 0.00 0.00 0.00 2.59
3020 6143 0.961358 CGGTCGGTCAAGGAGAGAGT 60.961 60.000 0.00 0.00 0.00 3.24
3021 6144 0.677098 TCGGTCGGTCAAGGAGAGAG 60.677 60.000 0.00 0.00 0.00 3.20
3022 6145 0.677098 CTCGGTCGGTCAAGGAGAGA 60.677 60.000 0.00 0.00 0.00 3.10
3023 6146 0.961358 ACTCGGTCGGTCAAGGAGAG 60.961 60.000 0.00 0.00 0.00 3.20
3024 6147 0.959372 GACTCGGTCGGTCAAGGAGA 60.959 60.000 6.97 0.00 34.23 3.71
3025 6148 1.507174 GACTCGGTCGGTCAAGGAG 59.493 63.158 6.97 0.00 34.23 3.69
3026 6149 3.677527 GACTCGGTCGGTCAAGGA 58.322 61.111 6.97 0.00 34.23 3.36
3039 6162 3.858868 TTCCACACGGCAGCGACTC 62.859 63.158 0.00 0.00 0.00 3.36
3040 6163 3.865929 CTTCCACACGGCAGCGACT 62.866 63.158 0.00 0.00 0.00 4.18
3041 6164 3.414700 CTTCCACACGGCAGCGAC 61.415 66.667 0.00 0.00 0.00 5.19


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.