Multiple sequence alignment - TraesCS7A01G506700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G506700 chr7A 100.000 2519 0 0 1 2519 694023587 694021069 0.000000e+00 4652.0
1 TraesCS7A01G506700 chr7A 89.684 475 49 0 996 1470 693838591 693839065 7.710000e-170 606.0
2 TraesCS7A01G506700 chr7A 84.836 488 59 12 995 1470 693815573 693816057 6.300000e-131 477.0
3 TraesCS7A01G506700 chr7A 89.286 280 30 0 549 828 188896466 188896745 3.990000e-93 351.0
4 TraesCS7A01G506700 chr7A 88.199 161 18 1 54 214 584035705 584035864 9.200000e-45 191.0
5 TraesCS7A01G506700 chr7A 88.235 68 8 0 1659 1726 619034999 619035066 5.780000e-12 82.4
6 TraesCS7A01G506700 chr7A 89.130 46 4 1 9 53 693838355 693838400 3.500000e-04 56.5
7 TraesCS7A01G506700 chr7D 90.249 482 43 2 1120 1601 602194656 602194179 5.920000e-176 627.0
8 TraesCS7A01G506700 chr7D 85.117 598 50 22 887 1466 602072714 602073290 2.170000e-160 575.0
9 TraesCS7A01G506700 chr7D 84.458 489 59 12 995 1470 602042855 602043339 1.360000e-127 466.0
10 TraesCS7A01G506700 chr7D 83.932 473 61 11 1010 1470 602409857 602409388 2.970000e-119 438.0
11 TraesCS7A01G506700 chr7D 83.369 469 47 15 1010 1467 602294980 602294532 3.020000e-109 405.0
12 TraesCS7A01G506700 chr7D 83.705 448 50 15 1013 1459 602197064 602197489 3.900000e-108 401.0
13 TraesCS7A01G506700 chr7D 89.076 238 13 4 1729 1958 602193815 602193583 1.480000e-72 283.0
14 TraesCS7A01G506700 chr7D 88.199 161 19 0 54 214 108237628 108237468 2.560000e-45 193.0
15 TraesCS7A01G506700 chr7D 81.857 237 32 7 2293 2519 602191503 602191268 3.310000e-44 189.0
16 TraesCS7A01G506700 chr7D 94.783 115 6 0 2026 2140 602193489 602193375 1.990000e-41 180.0
17 TraesCS7A01G506700 chr7B 83.940 604 52 15 887 1470 681750410 681750988 1.030000e-148 536.0
18 TraesCS7A01G506700 chr7B 83.402 482 62 11 1004 1470 681688766 681689244 4.980000e-117 431.0
19 TraesCS7A01G506700 chr7B 84.152 448 48 16 1013 1459 682886390 682885965 1.800000e-111 412.0
20 TraesCS7A01G506700 chr7B 82.340 470 50 15 1010 1470 682791394 682790949 6.580000e-101 377.0
21 TraesCS7A01G506700 chr7B 93.191 235 13 1 994 1228 681769914 681770145 2.400000e-90 342.0
22 TraesCS7A01G506700 chr7B 94.737 57 3 0 1660 1716 94762001 94761945 3.450000e-14 89.8
23 TraesCS7A01G506700 chr7B 91.304 46 3 1 9 53 681750307 681750352 7.520000e-06 62.1
24 TraesCS7A01G506700 chr4A 100.000 242 0 0 212 453 644689871 644690112 4.940000e-122 448.0
25 TraesCS7A01G506700 chr4A 90.071 282 25 2 550 828 187262304 187262023 1.840000e-96 363.0
26 TraesCS7A01G506700 chr4A 89.399 283 30 0 547 829 626934378 626934660 8.570000e-95 357.0
27 TraesCS7A01G506700 chr4A 89.606 279 29 0 548 826 42169444 42169722 3.080000e-94 355.0
28 TraesCS7A01G506700 chr4A 85.417 144 20 1 452 595 121496415 121496273 5.610000e-32 148.0
29 TraesCS7A01G506700 chr6A 99.587 242 1 0 213 454 135366294 135366535 2.300000e-120 442.0
30 TraesCS7A01G506700 chr6A 77.778 324 62 10 452 770 611108471 611108153 9.200000e-45 191.0
31 TraesCS7A01G506700 chr6A 94.175 103 6 0 452 554 22910410 22910308 9.330000e-35 158.0
32 TraesCS7A01G506700 chr5A 98.755 241 3 0 213 453 536150294 536150054 1.790000e-116 429.0
33 TraesCS7A01G506700 chr5A 89.680 281 29 0 548 828 408534696 408534416 2.380000e-95 359.0
34 TraesCS7A01G506700 chr5A 78.933 375 55 10 452 826 533482247 533481897 1.510000e-57 233.0
35 TraesCS7A01G506700 chr5A 90.062 161 16 0 54 214 464503568 464503408 2.540000e-50 209.0
36 TraesCS7A01G506700 chr5A 89.516 124 11 2 430 552 399300493 399300371 3.360000e-34 156.0
37 TraesCS7A01G506700 chr1A 98.340 241 4 0 213 453 287684917 287684677 8.330000e-115 424.0
38 TraesCS7A01G506700 chr1A 89.324 281 30 0 548 828 119267873 119268153 1.110000e-93 353.0
39 TraesCS7A01G506700 chr1A 91.045 67 6 0 1658 1724 20058319 20058385 9.600000e-15 91.6
40 TraesCS7A01G506700 chr3A 96.800 250 6 2 213 461 603307483 603307731 1.390000e-112 416.0
41 TraesCS7A01G506700 chr3A 89.590 317 30 3 514 828 444285355 444285670 1.400000e-107 399.0
42 TraesCS7A01G506700 chr3A 87.688 333 38 3 132 463 474953666 474953336 3.930000e-103 385.0
43 TraesCS7A01G506700 chr3A 90.062 161 16 0 54 214 733919752 733919592 2.540000e-50 209.0
44 TraesCS7A01G506700 chr3A 88.000 125 12 3 452 575 64071967 64072089 7.260000e-31 145.0
45 TraesCS7A01G506700 chr6B 93.455 275 12 5 208 481 350034355 350034086 1.090000e-108 403.0
46 TraesCS7A01G506700 chrUn 83.784 444 43 23 127 550 332215390 332214956 6.530000e-106 394.0
47 TraesCS7A01G506700 chrUn 81.395 516 65 25 56 550 332202781 332203286 2.350000e-105 392.0
48 TraesCS7A01G506700 chrUn 82.833 466 49 12 1010 1467 87232357 87231915 3.040000e-104 388.0
49 TraesCS7A01G506700 chr2A 83.085 402 53 13 454 844 77792681 77793078 3.990000e-93 351.0
50 TraesCS7A01G506700 chr2A 88.820 161 18 0 54 214 709821114 709821274 5.500000e-47 198.0
51 TraesCS7A01G506700 chr2A 88.199 161 19 0 54 214 56912439 56912279 2.560000e-45 193.0
52 TraesCS7A01G506700 chr2A 86.076 79 9 2 1639 1716 98103341 98103418 1.610000e-12 84.2
53 TraesCS7A01G506700 chr1B 89.007 282 31 0 548 829 558919894 558919613 1.430000e-92 350.0
54 TraesCS7A01G506700 chr1B 93.443 61 4 0 1660 1720 662033014 662033074 9.600000e-15 91.6
55 TraesCS7A01G506700 chr3D 85.065 154 20 3 466 617 355714456 355714608 1.210000e-33 154.0
56 TraesCS7A01G506700 chr3D 87.879 132 11 5 468 597 599294701 599294573 1.560000e-32 150.0
57 TraesCS7A01G506700 chr6D 93.220 59 4 0 1660 1718 416447258 416447200 1.240000e-13 87.9
58 TraesCS7A01G506700 chr2B 89.552 67 7 0 1658 1724 626111737 626111671 4.460000e-13 86.1
59 TraesCS7A01G506700 chr2B 84.444 90 9 2 1632 1720 338749693 338749608 1.610000e-12 84.2
60 TraesCS7A01G506700 chr2D 88.235 68 8 0 1652 1719 127777606 127777673 5.780000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G506700 chr7A 694021069 694023587 2518 True 4652.00 4652 100.00000 1 2519 1 chr7A.!!$R1 2518
1 TraesCS7A01G506700 chr7A 693838355 693839065 710 False 331.25 606 89.40700 9 1470 2 chr7A.!!$F5 1461
2 TraesCS7A01G506700 chr7D 602072714 602073290 576 False 575.00 575 85.11700 887 1466 1 chr7D.!!$F2 579
3 TraesCS7A01G506700 chr7D 602191268 602194656 3388 True 319.75 627 88.99125 1120 2519 4 chr7D.!!$R4 1399
4 TraesCS7A01G506700 chr7B 681750307 681750988 681 False 299.05 536 87.62200 9 1470 2 chr7B.!!$F3 1461
5 TraesCS7A01G506700 chrUn 332202781 332203286 505 False 392.00 392 81.39500 56 550 1 chrUn.!!$F1 494

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
955 964 0.38852 CAACGACGAGCTCCATCACA 60.389 55.0 8.47 0.0 0.0 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2280 4432 0.039911 ACAAGCTACTCCCTCCGTCT 59.96 55.0 0.0 0.0 0.0 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 44 2.358737 CGAGCCAACCGCCTTTCT 60.359 61.111 0.00 0.00 38.78 2.52
53 55 1.668419 CGCCTTTCTTCCACCCTATG 58.332 55.000 0.00 0.00 0.00 2.23
54 56 1.065418 CGCCTTTCTTCCACCCTATGT 60.065 52.381 0.00 0.00 0.00 2.29
59 61 3.981071 TTCTTCCACCCTATGTCACAG 57.019 47.619 0.00 0.00 0.00 3.66
62 64 2.319025 TCCACCCTATGTCACAGTGA 57.681 50.000 0.00 0.00 0.00 3.41
63 65 2.179427 TCCACCCTATGTCACAGTGAG 58.821 52.381 2.53 0.00 0.00 3.51
71 73 4.707448 CCTATGTCACAGTGAGGAGTAACT 59.293 45.833 2.53 0.00 0.00 2.24
74 76 5.707242 TGTCACAGTGAGGAGTAACTTAG 57.293 43.478 2.53 0.00 0.00 2.18
77 79 4.765856 TCACAGTGAGGAGTAACTTAGACC 59.234 45.833 0.00 0.00 0.00 3.85
81 83 4.767928 AGTGAGGAGTAACTTAGACCAGTG 59.232 45.833 0.00 0.00 0.00 3.66
82 84 4.523558 GTGAGGAGTAACTTAGACCAGTGT 59.476 45.833 0.00 0.00 0.00 3.55
86 88 5.186021 AGGAGTAACTTAGACCAGTGTCATG 59.814 44.000 0.00 0.00 44.33 3.07
89 91 3.988976 ACTTAGACCAGTGTCATGCAT 57.011 42.857 0.00 0.00 44.33 3.96
92 94 5.363101 ACTTAGACCAGTGTCATGCATATG 58.637 41.667 0.00 0.00 44.33 1.78
93 95 5.129320 ACTTAGACCAGTGTCATGCATATGA 59.871 40.000 6.97 0.00 44.33 2.15
94 96 4.701651 AGACCAGTGTCATGCATATGAT 57.298 40.909 6.97 0.00 44.62 2.45
95 97 5.813513 AGACCAGTGTCATGCATATGATA 57.186 39.130 6.97 0.00 44.62 2.15
104 106 7.323420 GTGTCATGCATATGATACTAGCCTAA 58.677 38.462 6.97 0.00 46.13 2.69
105 107 7.490725 GTGTCATGCATATGATACTAGCCTAAG 59.509 40.741 6.97 0.00 46.13 2.18
196 198 7.853377 AGACTTATTTTGTCTTAAAAAGCGC 57.147 32.000 0.00 0.00 41.45 5.92
197 199 7.649057 AGACTTATTTTGTCTTAAAAAGCGCT 58.351 30.769 2.64 2.64 41.45 5.92
206 208 7.192148 TGTCTTAAAAAGCGCTATGTTACAA 57.808 32.000 12.05 3.17 0.00 2.41
211 213 9.549509 CTTAAAAAGCGCTATGTTACAATAACA 57.450 29.630 12.05 4.01 34.31 2.41
251 253 6.775708 TCTATATAGGGCCTAATGCGTTTTT 58.224 36.000 18.91 0.00 42.61 1.94
258 260 2.908626 GCCTAATGCGTTTTTCAAGACG 59.091 45.455 0.00 0.00 41.89 4.18
260 262 3.058501 CCTAATGCGTTTTTCAAGACGGT 60.059 43.478 0.00 0.00 39.52 4.83
274 276 5.227908 TCAAGACGGTCTTTGACTATTGAC 58.772 41.667 20.27 0.00 33.78 3.18
277 279 5.230942 AGACGGTCTTTGACTATTGACAAG 58.769 41.667 4.45 0.00 32.47 3.16
347 349 9.612620 AAATCTTCTTTCACATACGAATTTGAC 57.387 29.630 0.00 0.00 0.00 3.18
349 351 5.524511 TCTTTCACATACGAATTTGACGG 57.475 39.130 0.00 0.00 34.93 4.79
351 353 6.157904 TCTTTCACATACGAATTTGACGGTA 58.842 36.000 0.00 0.00 34.93 4.02
358 360 4.078363 ACGAATTTGACGGTATGCTTTG 57.922 40.909 0.00 0.00 34.93 2.77
381 383 9.786105 TTTGTGTAAGTTGCATGTCATATATTG 57.214 29.630 0.00 0.00 0.00 1.90
418 420 4.035909 TGGTCAAAGTTAGCCTCGAAAAAC 59.964 41.667 0.00 0.00 0.00 2.43
453 455 7.146851 CCCTATATAGATGGAAGGAGGGAGTAT 60.147 44.444 11.53 0.00 44.48 2.12
454 456 8.293216 CCTATATAGATGGAAGGAGGGAGTATT 58.707 40.741 11.53 0.00 0.00 1.89
461 463 9.495382 AGATGGAAGGAGGGAGTATTATATTAC 57.505 37.037 0.00 0.00 0.00 1.89
462 464 9.495382 GATGGAAGGAGGGAGTATTATATTACT 57.505 37.037 6.95 6.95 35.13 2.24
464 466 9.765295 TGGAAGGAGGGAGTATTATATTACTAC 57.235 37.037 8.07 8.07 32.59 2.73
486 488 8.812972 ACTACCTCTCATTAATTACTTGTCACA 58.187 33.333 0.00 0.00 0.00 3.58
487 489 9.823647 CTACCTCTCATTAATTACTTGTCACAT 57.176 33.333 0.00 0.00 0.00 3.21
492 494 9.665719 TCTCATTAATTACTTGTCACATAAGCA 57.334 29.630 0.00 0.00 0.00 3.91
493 495 9.708222 CTCATTAATTACTTGTCACATAAGCAC 57.292 33.333 0.00 0.00 0.00 4.40
494 496 9.225436 TCATTAATTACTTGTCACATAAGCACA 57.775 29.630 0.00 0.00 0.00 4.57
495 497 9.838975 CATTAATTACTTGTCACATAAGCACAA 57.161 29.630 0.00 0.00 0.00 3.33
499 501 9.762933 AATTACTTGTCACATAAGCACAAATTT 57.237 25.926 0.00 0.00 29.78 1.82
500 502 9.762933 ATTACTTGTCACATAAGCACAAATTTT 57.237 25.926 0.00 0.00 29.78 1.82
501 503 9.593134 TTACTTGTCACATAAGCACAAATTTTT 57.407 25.926 0.00 0.00 29.78 1.94
520 522 5.682943 TTTTTGAAGTGCGCTATGTTACT 57.317 34.783 9.73 0.00 0.00 2.24
521 523 6.788684 TTTTTGAAGTGCGCTATGTTACTA 57.211 33.333 9.73 0.00 0.00 1.82
533 535 6.578172 GCGCTATGTTACTAGCTAAGTTACTC 59.422 42.308 0.00 0.00 41.61 2.59
534 536 7.076983 CGCTATGTTACTAGCTAAGTTACTCC 58.923 42.308 0.00 0.00 41.61 3.85
535 537 7.369607 GCTATGTTACTAGCTAAGTTACTCCC 58.630 42.308 0.00 0.00 40.79 4.30
541 543 6.963083 ACTAGCTAAGTTACTCCCACTATG 57.037 41.667 0.00 0.00 33.35 2.23
542 544 6.670617 ACTAGCTAAGTTACTCCCACTATGA 58.329 40.000 0.00 0.00 33.35 2.15
543 545 5.855740 AGCTAAGTTACTCCCACTATGAC 57.144 43.478 0.00 0.00 0.00 3.06
544 546 5.520751 AGCTAAGTTACTCCCACTATGACT 58.479 41.667 0.00 0.00 0.00 3.41
545 547 6.670617 AGCTAAGTTACTCCCACTATGACTA 58.329 40.000 0.00 0.00 0.00 2.59
546 548 6.773685 AGCTAAGTTACTCCCACTATGACTAG 59.226 42.308 0.00 0.00 0.00 2.57
547 549 6.546772 GCTAAGTTACTCCCACTATGACTAGT 59.453 42.308 0.00 0.00 38.79 2.57
548 550 7.255208 GCTAAGTTACTCCCACTATGACTAGTC 60.255 44.444 16.32 16.32 35.99 2.59
549 551 6.330178 AGTTACTCCCACTATGACTAGTCT 57.670 41.667 23.01 11.45 35.99 3.24
550 552 7.448915 AGTTACTCCCACTATGACTAGTCTA 57.551 40.000 23.01 10.48 35.99 2.59
551 553 7.870027 AGTTACTCCCACTATGACTAGTCTAA 58.130 38.462 23.01 10.46 35.99 2.10
552 554 7.994334 AGTTACTCCCACTATGACTAGTCTAAG 59.006 40.741 23.01 20.18 35.99 2.18
553 555 5.697067 ACTCCCACTATGACTAGTCTAAGG 58.303 45.833 23.01 16.10 35.99 2.69
554 556 4.471548 TCCCACTATGACTAGTCTAAGGC 58.528 47.826 23.01 0.00 35.99 4.35
555 557 4.168283 TCCCACTATGACTAGTCTAAGGCT 59.832 45.833 23.01 3.91 35.99 4.58
556 558 5.371769 TCCCACTATGACTAGTCTAAGGCTA 59.628 44.000 23.01 1.82 35.99 3.93
557 559 5.474189 CCCACTATGACTAGTCTAAGGCTAC 59.526 48.000 23.01 0.00 35.99 3.58
558 560 6.300703 CCACTATGACTAGTCTAAGGCTACT 58.699 44.000 23.01 2.64 35.99 2.57
559 561 6.428771 CCACTATGACTAGTCTAAGGCTACTC 59.571 46.154 23.01 0.00 35.99 2.59
560 562 6.993308 CACTATGACTAGTCTAAGGCTACTCA 59.007 42.308 23.01 0.00 35.99 3.41
561 563 7.663905 CACTATGACTAGTCTAAGGCTACTCAT 59.336 40.741 23.01 7.37 35.99 2.90
562 564 8.882282 ACTATGACTAGTCTAAGGCTACTCATA 58.118 37.037 23.01 8.07 32.56 2.15
563 565 9.378551 CTATGACTAGTCTAAGGCTACTCATAG 57.621 40.741 23.01 13.13 36.80 2.23
564 566 7.139287 TGACTAGTCTAAGGCTACTCATAGT 57.861 40.000 23.01 0.00 0.00 2.12
565 567 6.993308 TGACTAGTCTAAGGCTACTCATAGTG 59.007 42.308 23.01 0.00 0.00 2.74
566 568 6.300703 ACTAGTCTAAGGCTACTCATAGTGG 58.699 44.000 0.00 0.00 0.00 4.00
567 569 4.475345 AGTCTAAGGCTACTCATAGTGGG 58.525 47.826 0.00 0.00 0.00 4.61
568 570 3.574826 GTCTAAGGCTACTCATAGTGGGG 59.425 52.174 0.00 0.00 0.00 4.96
569 571 2.868964 AAGGCTACTCATAGTGGGGA 57.131 50.000 0.00 0.00 0.00 4.81
570 572 2.390225 AGGCTACTCATAGTGGGGAG 57.610 55.000 0.00 0.00 37.18 4.30
571 573 1.576272 AGGCTACTCATAGTGGGGAGT 59.424 52.381 0.00 0.00 45.72 3.85
572 574 2.789992 AGGCTACTCATAGTGGGGAGTA 59.210 50.000 0.00 0.00 42.30 2.59
573 575 3.206866 AGGCTACTCATAGTGGGGAGTAA 59.793 47.826 0.00 0.00 43.77 2.24
574 576 3.321396 GGCTACTCATAGTGGGGAGTAAC 59.679 52.174 0.00 0.00 43.77 2.50
575 577 3.958798 GCTACTCATAGTGGGGAGTAACA 59.041 47.826 0.00 0.00 43.77 2.41
576 578 4.589374 GCTACTCATAGTGGGGAGTAACAT 59.411 45.833 0.00 0.00 43.77 2.71
577 579 5.773680 GCTACTCATAGTGGGGAGTAACATA 59.226 44.000 0.00 0.00 43.77 2.29
578 580 6.071840 GCTACTCATAGTGGGGAGTAACATAG 60.072 46.154 0.00 0.00 43.77 2.23
579 581 6.027025 ACTCATAGTGGGGAGTAACATAGA 57.973 41.667 0.00 0.00 42.30 1.98
580 582 5.834204 ACTCATAGTGGGGAGTAACATAGAC 59.166 44.000 0.00 0.00 42.30 2.59
581 583 6.027025 TCATAGTGGGGAGTAACATAGACT 57.973 41.667 0.00 0.00 0.00 3.24
582 584 7.147177 ACTCATAGTGGGGAGTAACATAGACTA 60.147 40.741 0.00 0.00 42.30 2.59
583 585 7.232188 TCATAGTGGGGAGTAACATAGACTAG 58.768 42.308 0.00 0.00 0.00 2.57
584 586 5.469210 AGTGGGGAGTAACATAGACTAGT 57.531 43.478 0.00 0.00 0.00 2.57
585 587 5.202004 AGTGGGGAGTAACATAGACTAGTG 58.798 45.833 0.00 0.00 0.00 2.74
586 588 4.954826 GTGGGGAGTAACATAGACTAGTGT 59.045 45.833 0.00 0.00 0.00 3.55
587 589 5.067544 GTGGGGAGTAACATAGACTAGTGTC 59.932 48.000 0.00 0.00 43.22 3.67
588 590 5.198965 GGGGAGTAACATAGACTAGTGTCA 58.801 45.833 0.00 0.00 45.20 3.58
589 591 5.834204 GGGGAGTAACATAGACTAGTGTCAT 59.166 44.000 0.00 0.00 45.20 3.06
590 592 6.239064 GGGGAGTAACATAGACTAGTGTCATG 60.239 46.154 0.00 3.26 45.20 3.07
591 593 6.210078 GGAGTAACATAGACTAGTGTCATGC 58.790 44.000 0.00 0.00 45.20 4.06
592 594 6.183360 GGAGTAACATAGACTAGTGTCATGCA 60.183 42.308 0.00 0.00 45.20 3.96
593 595 7.353414 AGTAACATAGACTAGTGTCATGCAT 57.647 36.000 0.00 0.00 45.20 3.96
594 596 8.465273 AGTAACATAGACTAGTGTCATGCATA 57.535 34.615 0.00 0.00 45.20 3.14
595 597 9.083422 AGTAACATAGACTAGTGTCATGCATAT 57.917 33.333 0.00 0.00 45.20 1.78
596 598 9.133627 GTAACATAGACTAGTGTCATGCATATG 57.866 37.037 0.00 0.00 45.20 1.78
597 599 7.530426 ACATAGACTAGTGTCATGCATATGA 57.470 36.000 6.97 0.00 45.20 2.15
628 630 9.809395 AGTCTATATTACTACCTTCATAGTGCA 57.191 33.333 0.00 0.00 36.09 4.57
635 637 8.767478 TTACTACCTTCATAGTGCAAAGTAAC 57.233 34.615 0.00 0.00 36.09 2.50
636 638 6.765403 ACTACCTTCATAGTGCAAAGTAACA 58.235 36.000 0.00 0.00 34.02 2.41
637 639 7.394816 ACTACCTTCATAGTGCAAAGTAACAT 58.605 34.615 0.00 0.00 34.02 2.71
638 640 8.537016 ACTACCTTCATAGTGCAAAGTAACATA 58.463 33.333 0.00 0.00 34.02 2.29
639 641 9.378551 CTACCTTCATAGTGCAAAGTAACATAA 57.621 33.333 0.00 0.00 0.00 1.90
640 642 8.630054 ACCTTCATAGTGCAAAGTAACATAAA 57.370 30.769 0.00 0.00 0.00 1.40
641 643 9.073475 ACCTTCATAGTGCAAAGTAACATAAAA 57.927 29.630 0.00 0.00 0.00 1.52
642 644 9.906660 CCTTCATAGTGCAAAGTAACATAAAAA 57.093 29.630 0.00 0.00 0.00 1.94
689 691 9.890629 TTTATTACAATGTAGACTCATTCTGCT 57.109 29.630 0.00 0.00 37.81 4.24
690 692 9.890629 TTATTACAATGTAGACTCATTCTGCTT 57.109 29.630 0.00 0.00 37.81 3.91
691 693 8.798859 ATTACAATGTAGACTCATTCTGCTTT 57.201 30.769 0.00 0.00 37.81 3.51
693 695 5.877031 CAATGTAGACTCATTCTGCTTTGG 58.123 41.667 8.96 0.00 43.04 3.28
694 696 4.890158 TGTAGACTCATTCTGCTTTGGA 57.110 40.909 0.00 0.00 37.81 3.53
695 697 5.426689 TGTAGACTCATTCTGCTTTGGAT 57.573 39.130 0.00 0.00 37.81 3.41
696 698 5.809001 TGTAGACTCATTCTGCTTTGGATT 58.191 37.500 0.00 0.00 37.81 3.01
697 699 6.240894 TGTAGACTCATTCTGCTTTGGATTT 58.759 36.000 0.00 0.00 37.81 2.17
698 700 6.716628 TGTAGACTCATTCTGCTTTGGATTTT 59.283 34.615 0.00 0.00 37.81 1.82
699 701 6.022163 AGACTCATTCTGCTTTGGATTTTG 57.978 37.500 0.00 0.00 31.12 2.44
700 702 5.537674 AGACTCATTCTGCTTTGGATTTTGT 59.462 36.000 0.00 0.00 31.12 2.83
701 703 6.041296 AGACTCATTCTGCTTTGGATTTTGTT 59.959 34.615 0.00 0.00 31.12 2.83
702 704 7.231317 AGACTCATTCTGCTTTGGATTTTGTTA 59.769 33.333 0.00 0.00 31.12 2.41
703 705 7.899973 ACTCATTCTGCTTTGGATTTTGTTAT 58.100 30.769 0.00 0.00 0.00 1.89
704 706 7.816031 ACTCATTCTGCTTTGGATTTTGTTATG 59.184 33.333 0.00 0.00 0.00 1.90
705 707 7.669427 TCATTCTGCTTTGGATTTTGTTATGT 58.331 30.769 0.00 0.00 0.00 2.29
706 708 8.149647 TCATTCTGCTTTGGATTTTGTTATGTT 58.850 29.630 0.00 0.00 0.00 2.71
707 709 9.421806 CATTCTGCTTTGGATTTTGTTATGTTA 57.578 29.630 0.00 0.00 0.00 2.41
708 710 8.810652 TTCTGCTTTGGATTTTGTTATGTTAC 57.189 30.769 0.00 0.00 0.00 2.50
709 711 7.946207 TCTGCTTTGGATTTTGTTATGTTACA 58.054 30.769 0.00 0.00 0.00 2.41
710 712 8.081633 TCTGCTTTGGATTTTGTTATGTTACAG 58.918 33.333 0.00 0.00 0.00 2.74
711 713 7.721402 TGCTTTGGATTTTGTTATGTTACAGT 58.279 30.769 0.00 0.00 0.00 3.55
712 714 8.851145 TGCTTTGGATTTTGTTATGTTACAGTA 58.149 29.630 0.00 0.00 0.00 2.74
713 715 9.685828 GCTTTGGATTTTGTTATGTTACAGTAA 57.314 29.630 0.00 0.00 0.00 2.24
762 764 6.553953 TCTCCTTATTAACTACATGCCACA 57.446 37.500 0.00 0.00 0.00 4.17
763 765 7.136822 TCTCCTTATTAACTACATGCCACAT 57.863 36.000 0.00 0.00 0.00 3.21
764 766 8.257602 TCTCCTTATTAACTACATGCCACATA 57.742 34.615 0.00 0.00 0.00 2.29
765 767 8.710239 TCTCCTTATTAACTACATGCCACATAA 58.290 33.333 0.00 0.00 0.00 1.90
766 768 8.902540 TCCTTATTAACTACATGCCACATAAG 57.097 34.615 0.00 0.00 0.00 1.73
767 769 7.444183 TCCTTATTAACTACATGCCACATAAGC 59.556 37.037 0.00 0.00 0.00 3.09
768 770 7.228507 CCTTATTAACTACATGCCACATAAGCA 59.771 37.037 0.00 0.00 45.94 3.91
769 771 8.512966 TTATTAACTACATGCCACATAAGCAA 57.487 30.769 0.00 0.00 44.83 3.91
770 772 6.825944 TTAACTACATGCCACATAAGCAAA 57.174 33.333 0.00 0.00 44.83 3.68
771 773 4.701956 ACTACATGCCACATAAGCAAAC 57.298 40.909 0.00 0.00 44.83 2.93
772 774 4.335416 ACTACATGCCACATAAGCAAACT 58.665 39.130 0.00 0.00 44.83 2.66
773 775 4.766891 ACTACATGCCACATAAGCAAACTT 59.233 37.500 0.00 0.00 44.83 2.66
774 776 5.943416 ACTACATGCCACATAAGCAAACTTA 59.057 36.000 0.00 0.00 44.83 2.24
776 778 5.894807 ACATGCCACATAAGCAAACTTATC 58.105 37.500 0.00 0.00 44.17 1.75
777 779 5.653769 ACATGCCACATAAGCAAACTTATCT 59.346 36.000 0.00 0.00 44.17 1.98
778 780 6.153340 ACATGCCACATAAGCAAACTTATCTT 59.847 34.615 0.00 0.00 44.17 2.40
779 781 5.953183 TGCCACATAAGCAAACTTATCTTG 58.047 37.500 0.00 0.00 44.17 3.02
780 782 5.709631 TGCCACATAAGCAAACTTATCTTGA 59.290 36.000 0.00 0.00 44.17 3.02
781 783 6.208402 TGCCACATAAGCAAACTTATCTTGAA 59.792 34.615 0.00 0.00 44.17 2.69
782 784 7.090173 GCCACATAAGCAAACTTATCTTGAAA 58.910 34.615 0.00 0.00 44.17 2.69
783 785 7.598493 GCCACATAAGCAAACTTATCTTGAAAA 59.402 33.333 0.00 0.00 44.17 2.29
784 786 9.474920 CCACATAAGCAAACTTATCTTGAAAAA 57.525 29.630 0.00 0.00 44.17 1.94
786 788 9.180678 ACATAAGCAAACTTATCTTGAAAAACG 57.819 29.630 0.00 0.00 44.17 3.60
787 789 9.180678 CATAAGCAAACTTATCTTGAAAAACGT 57.819 29.630 0.00 0.00 44.17 3.99
788 790 9.744468 ATAAGCAAACTTATCTTGAAAAACGTT 57.256 25.926 0.00 0.00 44.17 3.99
790 792 9.744468 AAGCAAACTTATCTTGAAAAACGTTAT 57.256 25.926 0.00 0.00 33.13 1.89
791 793 9.180678 AGCAAACTTATCTTGAAAAACGTTATG 57.819 29.630 0.00 0.00 0.00 1.90
792 794 8.964150 GCAAACTTATCTTGAAAAACGTTATGT 58.036 29.630 0.00 0.00 0.00 2.29
820 822 9.884814 ACTAGATAAATTACTCCCACTATGACT 57.115 33.333 0.00 0.00 0.00 3.41
823 825 8.808092 AGATAAATTACTCCCACTATGACTAGC 58.192 37.037 0.00 0.00 0.00 3.42
824 826 5.810080 AATTACTCCCACTATGACTAGCC 57.190 43.478 0.00 0.00 0.00 3.93
825 827 4.537945 TTACTCCCACTATGACTAGCCT 57.462 45.455 0.00 0.00 0.00 4.58
826 828 5.658198 TTACTCCCACTATGACTAGCCTA 57.342 43.478 0.00 0.00 0.00 3.93
827 829 4.537945 ACTCCCACTATGACTAGCCTAA 57.462 45.455 0.00 0.00 0.00 2.69
828 830 4.880164 ACTCCCACTATGACTAGCCTAAA 58.120 43.478 0.00 0.00 0.00 1.85
829 831 5.468658 ACTCCCACTATGACTAGCCTAAAT 58.531 41.667 0.00 0.00 0.00 1.40
830 832 5.540719 ACTCCCACTATGACTAGCCTAAATC 59.459 44.000 0.00 0.00 0.00 2.17
867 875 4.840115 ACATTCATTCCAAGTTCCAACCAT 59.160 37.500 0.00 0.00 0.00 3.55
868 876 5.307716 ACATTCATTCCAAGTTCCAACCATT 59.692 36.000 0.00 0.00 0.00 3.16
869 877 5.467035 TTCATTCCAAGTTCCAACCATTC 57.533 39.130 0.00 0.00 0.00 2.67
870 878 3.831911 TCATTCCAAGTTCCAACCATTCC 59.168 43.478 0.00 0.00 0.00 3.01
871 879 3.320610 TTCCAAGTTCCAACCATTCCA 57.679 42.857 0.00 0.00 0.00 3.53
872 880 2.875296 TCCAAGTTCCAACCATTCCAG 58.125 47.619 0.00 0.00 0.00 3.86
873 881 1.273327 CCAAGTTCCAACCATTCCAGC 59.727 52.381 0.00 0.00 0.00 4.85
874 882 2.242043 CAAGTTCCAACCATTCCAGCT 58.758 47.619 0.00 0.00 0.00 4.24
875 883 2.206576 AGTTCCAACCATTCCAGCTC 57.793 50.000 0.00 0.00 0.00 4.09
876 884 1.177401 GTTCCAACCATTCCAGCTCC 58.823 55.000 0.00 0.00 0.00 4.70
877 885 0.776810 TTCCAACCATTCCAGCTCCA 59.223 50.000 0.00 0.00 0.00 3.86
878 886 0.776810 TCCAACCATTCCAGCTCCAA 59.223 50.000 0.00 0.00 0.00 3.53
879 887 0.890683 CCAACCATTCCAGCTCCAAC 59.109 55.000 0.00 0.00 0.00 3.77
880 888 0.890683 CAACCATTCCAGCTCCAACC 59.109 55.000 0.00 0.00 0.00 3.77
881 889 0.482446 AACCATTCCAGCTCCAACCA 59.518 50.000 0.00 0.00 0.00 3.67
882 890 0.706433 ACCATTCCAGCTCCAACCAT 59.294 50.000 0.00 0.00 0.00 3.55
883 891 1.341383 ACCATTCCAGCTCCAACCATC 60.341 52.381 0.00 0.00 0.00 3.51
884 892 1.064166 CCATTCCAGCTCCAACCATCT 60.064 52.381 0.00 0.00 0.00 2.90
885 893 2.295885 CATTCCAGCTCCAACCATCTC 58.704 52.381 0.00 0.00 0.00 2.75
911 920 2.149803 CTCCACCACGCGGTAACAGA 62.150 60.000 12.47 0.00 46.94 3.41
940 949 4.110493 GGGAGATCCGAAGCAACG 57.890 61.111 0.00 0.00 36.71 4.10
943 952 1.140407 GGAGATCCGAAGCAACGACG 61.140 60.000 4.23 0.00 35.09 5.12
953 962 1.446099 GCAACGACGAGCTCCATCA 60.446 57.895 8.47 0.00 0.00 3.07
955 964 0.388520 CAACGACGAGCTCCATCACA 60.389 55.000 8.47 0.00 0.00 3.58
956 965 0.388649 AACGACGAGCTCCATCACAC 60.389 55.000 8.47 0.00 0.00 3.82
957 966 1.212751 CGACGAGCTCCATCACACA 59.787 57.895 8.47 0.00 0.00 3.72
958 967 0.388520 CGACGAGCTCCATCACACAA 60.389 55.000 8.47 0.00 0.00 3.33
965 981 1.929836 GCTCCATCACACAACTCGATC 59.070 52.381 0.00 0.00 0.00 3.69
966 982 2.188524 CTCCATCACACAACTCGATCG 58.811 52.381 9.36 9.36 0.00 3.69
973 989 1.738350 ACACAACTCGATCGATCTCGT 59.262 47.619 19.78 15.57 39.62 4.18
974 990 2.104901 CACAACTCGATCGATCTCGTG 58.895 52.381 19.78 18.12 39.62 4.35
980 996 2.542178 CTCGATCGATCTCGTGTTCTCT 59.458 50.000 19.78 0.00 39.62 3.10
997 1036 5.188555 TGTTCTCTTGATCTCTTGGCTACAT 59.811 40.000 0.00 0.00 0.00 2.29
1008 1047 1.893808 GGCTACATCCATGGCCACG 60.894 63.158 8.16 0.00 43.59 4.94
1038 1077 4.374702 GTGCTCAACCTGCGCGTG 62.375 66.667 8.43 0.36 29.18 5.34
1221 1260 0.551131 AGGTCAAGAGGGCCTTCCAT 60.551 55.000 11.97 0.00 38.24 3.41
1273 1312 4.724602 GGCGAGACAGCTGCGACA 62.725 66.667 15.27 0.00 37.29 4.35
1274 1313 2.734723 GCGAGACAGCTGCGACAA 60.735 61.111 15.27 0.00 0.00 3.18
1276 1315 2.710971 CGAGACAGCTGCGACAACG 61.711 63.158 15.27 11.39 42.93 4.10
1428 1473 1.065928 CTACCGCCGCTACCTCAAG 59.934 63.158 0.00 0.00 0.00 3.02
1443 1488 0.675837 TCAAGGACGACGACGAGGAT 60.676 55.000 15.32 0.00 42.66 3.24
1453 1498 0.811915 CGACGAGGATGACTGGTTCT 59.188 55.000 0.00 0.00 38.35 3.01
1462 1507 0.596577 TGACTGGTTCTCCGACTTCG 59.403 55.000 0.00 0.00 36.30 3.79
1490 1535 4.980805 TCCTTGCCGTGCCGTGAC 62.981 66.667 0.00 0.00 0.00 3.67
1504 1549 1.891919 GTGACAGAGGCGTTGGCAA 60.892 57.895 0.00 0.00 42.47 4.52
1505 1550 1.073025 TGACAGAGGCGTTGGCAAT 59.927 52.632 1.92 0.00 42.47 3.56
1506 1551 0.955428 TGACAGAGGCGTTGGCAATC 60.955 55.000 1.92 0.00 42.47 2.67
1525 1570 5.630061 CAATCATCACACTGTAAATTCGCA 58.370 37.500 0.00 0.00 0.00 5.10
1541 1586 4.000557 CACGACGTGTGTGGCTGC 62.001 66.667 19.77 0.00 43.88 5.25
1544 1589 2.355363 GACGTGTGTGGCTGCGTA 60.355 61.111 0.00 0.00 37.71 4.42
1545 1590 1.736645 GACGTGTGTGGCTGCGTAT 60.737 57.895 0.00 0.00 37.71 3.06
1551 1596 1.001974 TGTGTGGCTGCGTATTTCTCT 59.998 47.619 0.00 0.00 0.00 3.10
1562 1607 6.510317 GCTGCGTATTTCTCTCCTGTTTTATC 60.510 42.308 0.00 0.00 0.00 1.75
1565 1610 6.508088 GCGTATTTCTCTCCTGTTTTATCGTG 60.508 42.308 0.00 0.00 0.00 4.35
1566 1611 6.019801 CGTATTTCTCTCCTGTTTTATCGTGG 60.020 42.308 0.00 0.00 0.00 4.94
1573 1618 2.290705 CCTGTTTTATCGTGGGGGAAGT 60.291 50.000 0.00 0.00 0.00 3.01
1575 1620 4.189231 CTGTTTTATCGTGGGGGAAGTAG 58.811 47.826 0.00 0.00 0.00 2.57
1576 1621 3.583966 TGTTTTATCGTGGGGGAAGTAGT 59.416 43.478 0.00 0.00 0.00 2.73
1586 1631 3.243724 GGGGGAAGTAGTAGATGCAGAT 58.756 50.000 0.00 0.00 0.00 2.90
1588 1633 5.026790 GGGGGAAGTAGTAGATGCAGATAT 58.973 45.833 0.00 0.00 0.00 1.63
1590 1635 6.013293 GGGGGAAGTAGTAGATGCAGATATTT 60.013 42.308 0.00 0.00 0.00 1.40
1601 1646 9.646427 GTAGATGCAGATATTTTAGGGTTCTAG 57.354 37.037 0.00 0.00 0.00 2.43
1602 1647 7.164803 AGATGCAGATATTTTAGGGTTCTAGC 58.835 38.462 0.00 0.00 0.00 3.42
1604 1649 6.658849 TGCAGATATTTTAGGGTTCTAGCAA 58.341 36.000 0.00 0.00 0.00 3.91
1605 1650 7.116075 TGCAGATATTTTAGGGTTCTAGCAAA 58.884 34.615 0.00 0.00 0.00 3.68
1606 1651 7.779798 TGCAGATATTTTAGGGTTCTAGCAAAT 59.220 33.333 0.00 0.00 0.00 2.32
1608 1653 9.956720 CAGATATTTTAGGGTTCTAGCAAATTG 57.043 33.333 0.00 0.00 0.00 2.32
1613 1969 7.916914 TTTAGGGTTCTAGCAAATTGTACTC 57.083 36.000 0.00 0.00 0.00 2.59
1617 1973 5.585047 GGGTTCTAGCAAATTGTACTCGATT 59.415 40.000 0.00 0.00 0.00 3.34
1628 1984 8.427012 CAAATTGTACTCGATTGGAACATTTTG 58.573 33.333 8.70 8.70 39.30 2.44
1629 1985 6.627395 TTGTACTCGATTGGAACATTTTGT 57.373 33.333 0.00 0.00 39.30 2.83
1637 1993 6.644592 TCGATTGGAACATTTTGTTTCCATTC 59.355 34.615 12.27 12.27 41.28 2.67
1651 2007 8.561738 TTGTTTCCATTCTAAATACTCTCACC 57.438 34.615 0.00 0.00 0.00 4.02
1652 2008 6.816640 TGTTTCCATTCTAAATACTCTCACCG 59.183 38.462 0.00 0.00 0.00 4.94
1653 2009 6.540438 TTCCATTCTAAATACTCTCACCGT 57.460 37.500 0.00 0.00 0.00 4.83
1654 2010 6.145338 TCCATTCTAAATACTCTCACCGTC 57.855 41.667 0.00 0.00 0.00 4.79
1655 2011 5.892119 TCCATTCTAAATACTCTCACCGTCT 59.108 40.000 0.00 0.00 0.00 4.18
1656 2012 6.039493 TCCATTCTAAATACTCTCACCGTCTC 59.961 42.308 0.00 0.00 0.00 3.36
1657 2013 6.039941 CCATTCTAAATACTCTCACCGTCTCT 59.960 42.308 0.00 0.00 0.00 3.10
1658 2014 6.438259 TTCTAAATACTCTCACCGTCTCTG 57.562 41.667 0.00 0.00 0.00 3.35
1659 2015 5.498393 TCTAAATACTCTCACCGTCTCTGT 58.502 41.667 0.00 0.00 0.00 3.41
1660 2016 5.944599 TCTAAATACTCTCACCGTCTCTGTT 59.055 40.000 0.00 0.00 0.00 3.16
1661 2017 7.108194 TCTAAATACTCTCACCGTCTCTGTTA 58.892 38.462 0.00 0.00 0.00 2.41
1662 2018 5.821516 AATACTCTCACCGTCTCTGTTAG 57.178 43.478 0.00 0.00 0.00 2.34
1663 2019 3.420300 ACTCTCACCGTCTCTGTTAGA 57.580 47.619 0.00 0.00 0.00 2.10
1664 2020 3.958018 ACTCTCACCGTCTCTGTTAGAT 58.042 45.455 0.00 0.00 36.36 1.98
1665 2021 5.100344 ACTCTCACCGTCTCTGTTAGATA 57.900 43.478 0.00 0.00 36.36 1.98
1666 2022 4.877251 ACTCTCACCGTCTCTGTTAGATAC 59.123 45.833 0.00 0.00 36.36 2.24
1667 2023 4.840271 TCTCACCGTCTCTGTTAGATACA 58.160 43.478 0.00 0.00 36.36 2.29
1668 2024 5.437946 TCTCACCGTCTCTGTTAGATACAT 58.562 41.667 0.00 0.00 36.36 2.29
1669 2025 5.527951 TCTCACCGTCTCTGTTAGATACATC 59.472 44.000 0.00 0.00 36.36 3.06
1670 2026 4.579340 TCACCGTCTCTGTTAGATACATCC 59.421 45.833 0.00 0.00 36.36 3.51
1671 2027 3.564644 ACCGTCTCTGTTAGATACATCCG 59.435 47.826 0.00 0.00 36.36 4.18
1672 2028 3.564644 CCGTCTCTGTTAGATACATCCGT 59.435 47.826 0.00 0.00 36.36 4.69
1673 2029 4.753610 CCGTCTCTGTTAGATACATCCGTA 59.246 45.833 0.00 0.00 36.36 4.02
1674 2030 5.411977 CCGTCTCTGTTAGATACATCCGTAT 59.588 44.000 0.00 0.00 41.16 3.06
1719 2075 8.959705 AAAATTTAAGACGGAGGGAGTATAAG 57.040 34.615 0.00 0.00 0.00 1.73
1720 2076 6.667558 ATTTAAGACGGAGGGAGTATAAGG 57.332 41.667 0.00 0.00 0.00 2.69
1721 2077 2.679429 AGACGGAGGGAGTATAAGGG 57.321 55.000 0.00 0.00 0.00 3.95
1726 2082 3.710165 ACGGAGGGAGTATAAGGGAAAAG 59.290 47.826 0.00 0.00 0.00 2.27
1727 2083 3.494573 CGGAGGGAGTATAAGGGAAAAGC 60.495 52.174 0.00 0.00 0.00 3.51
1731 2087 4.065789 GGGAGTATAAGGGAAAAGCATCG 58.934 47.826 0.00 0.00 0.00 3.84
1740 2096 2.099756 GGGAAAAGCATCGGAGGAATTG 59.900 50.000 0.00 0.00 0.00 2.32
1760 2116 2.885137 TGATCCAAATTGTGGCTCAGGG 60.885 50.000 0.00 0.00 45.59 4.45
1765 2121 3.628646 ATTGTGGCTCAGGGACGCC 62.629 63.158 0.00 0.00 46.46 5.68
1770 2126 2.058595 GGCTCAGGGACGCCTCTTA 61.059 63.158 0.00 0.00 42.98 2.10
1810 2170 1.263217 GGAACGCTTCTTTCGCTTTCA 59.737 47.619 0.00 0.00 37.37 2.69
1821 2181 4.094887 TCTTTCGCTTTCAGTGATAATGGC 59.905 41.667 0.00 0.00 34.32 4.40
1822 2182 2.984562 TCGCTTTCAGTGATAATGGCA 58.015 42.857 0.00 0.00 28.30 4.92
1845 2205 1.463831 CTGACTGATGACACTTGCTGC 59.536 52.381 0.00 0.00 0.00 5.25
1848 2208 0.803117 CTGATGACACTTGCTGCTGG 59.197 55.000 0.00 0.00 0.00 4.85
1849 2209 0.109153 TGATGACACTTGCTGCTGGT 59.891 50.000 0.00 0.00 0.00 4.00
1850 2210 0.520404 GATGACACTTGCTGCTGGTG 59.480 55.000 18.45 18.45 37.05 4.17
1851 2211 0.109153 ATGACACTTGCTGCTGGTGA 59.891 50.000 23.87 9.67 35.28 4.02
1852 2212 0.107263 TGACACTTGCTGCTGGTGAA 60.107 50.000 23.87 13.35 35.28 3.18
1853 2213 1.024271 GACACTTGCTGCTGGTGAAA 58.976 50.000 23.87 1.01 35.28 2.69
1855 2215 2.813754 GACACTTGCTGCTGGTGAAATA 59.186 45.455 23.87 0.00 35.28 1.40
1856 2216 2.816087 ACACTTGCTGCTGGTGAAATAG 59.184 45.455 23.87 5.23 35.28 1.73
1857 2217 2.816087 CACTTGCTGCTGGTGAAATAGT 59.184 45.455 16.26 0.00 33.32 2.12
1864 2225 4.378874 GCTGCTGGTGAAATAGTTCAGTTC 60.379 45.833 5.73 0.34 44.44 3.01
1886 2247 4.213270 TCTTCACTGTAAAAATGTCAGCCG 59.787 41.667 0.00 0.00 33.12 5.52
1893 2254 5.038033 TGTAAAAATGTCAGCCGTTTGTTC 58.962 37.500 0.00 0.00 32.57 3.18
1896 2257 2.254546 ATGTCAGCCGTTTGTTCTGA 57.745 45.000 0.00 0.00 34.78 3.27
1905 2266 3.426695 GCCGTTTGTTCTGATTGATCCTG 60.427 47.826 0.00 0.00 0.00 3.86
1963 2324 4.389374 ACATGGGTAGAAGATTTATGGCG 58.611 43.478 0.00 0.00 0.00 5.69
1964 2325 2.846193 TGGGTAGAAGATTTATGGCGC 58.154 47.619 0.00 0.00 0.00 6.53
1965 2326 2.438021 TGGGTAGAAGATTTATGGCGCT 59.562 45.455 7.64 0.00 0.00 5.92
1966 2327 2.808543 GGGTAGAAGATTTATGGCGCTG 59.191 50.000 7.64 0.00 0.00 5.18
1967 2328 3.467803 GGTAGAAGATTTATGGCGCTGT 58.532 45.455 7.64 0.00 0.00 4.40
1968 2329 3.877508 GGTAGAAGATTTATGGCGCTGTT 59.122 43.478 7.64 0.00 0.00 3.16
1981 2342 1.470098 GCGCTGTTGTTGATCTGGATT 59.530 47.619 0.00 0.00 0.00 3.01
1982 2343 2.677836 GCGCTGTTGTTGATCTGGATTA 59.322 45.455 0.00 0.00 0.00 1.75
1987 2348 5.877012 GCTGTTGTTGATCTGGATTAGAGAA 59.123 40.000 0.00 0.00 39.20 2.87
1989 2350 7.244886 TGTTGTTGATCTGGATTAGAGAAGA 57.755 36.000 0.00 0.00 39.20 2.87
1995 2356 7.180322 TGATCTGGATTAGAGAAGATATGGC 57.820 40.000 0.00 0.00 39.20 4.40
1999 2363 7.392418 TCTGGATTAGAGAAGATATGGCATTG 58.608 38.462 4.78 0.00 0.00 2.82
2044 2445 8.029522 TGTTAGTAGAGCTCACAAACTATTCAG 58.970 37.037 17.77 0.00 29.22 3.02
2047 2448 7.093992 AGTAGAGCTCACAAACTATTCAGTTC 58.906 38.462 17.77 0.00 44.41 3.01
2094 2495 4.160065 TGTTTAATCCCAATGACATGCCAG 59.840 41.667 0.00 0.00 0.00 4.85
2115 2516 3.070018 GGAGTCTTGATCCACACAGTTG 58.930 50.000 0.00 0.00 36.79 3.16
2125 2526 1.535462 CCACACAGTTGATTTCCCGTC 59.465 52.381 0.00 0.00 0.00 4.79
2136 2537 1.179152 TTTCCCGTCAGTATCTCGCA 58.821 50.000 0.00 0.00 0.00 5.10
2140 2541 0.039074 CCGTCAGTATCTCGCATCCC 60.039 60.000 0.00 0.00 0.00 3.85
2141 2542 0.955178 CGTCAGTATCTCGCATCCCT 59.045 55.000 0.00 0.00 0.00 4.20
2142 2543 1.338337 CGTCAGTATCTCGCATCCCTT 59.662 52.381 0.00 0.00 0.00 3.95
2143 2544 2.748605 GTCAGTATCTCGCATCCCTTG 58.251 52.381 0.00 0.00 0.00 3.61
2144 2545 2.101582 GTCAGTATCTCGCATCCCTTGT 59.898 50.000 0.00 0.00 0.00 3.16
2147 2548 3.068165 CAGTATCTCGCATCCCTTGTGTA 59.932 47.826 0.00 0.00 37.14 2.90
2149 2550 2.602257 TCTCGCATCCCTTGTGTATG 57.398 50.000 0.00 0.00 37.14 2.39
2150 2551 1.831106 TCTCGCATCCCTTGTGTATGT 59.169 47.619 0.00 0.00 37.14 2.29
2152 2553 3.449377 TCTCGCATCCCTTGTGTATGTTA 59.551 43.478 0.00 0.00 37.14 2.41
2154 2555 3.449377 TCGCATCCCTTGTGTATGTTAGA 59.551 43.478 0.00 0.00 37.14 2.10
2155 2556 3.804325 CGCATCCCTTGTGTATGTTAGAG 59.196 47.826 0.00 0.00 0.00 2.43
2156 2557 4.130118 GCATCCCTTGTGTATGTTAGAGG 58.870 47.826 0.00 0.00 0.00 3.69
2157 2558 4.141711 GCATCCCTTGTGTATGTTAGAGGA 60.142 45.833 0.00 0.00 0.00 3.71
2158 2559 5.455326 GCATCCCTTGTGTATGTTAGAGGAT 60.455 44.000 0.00 0.00 31.82 3.24
2159 2560 5.871396 TCCCTTGTGTATGTTAGAGGATC 57.129 43.478 0.00 0.00 0.00 3.36
2160 2561 4.654262 TCCCTTGTGTATGTTAGAGGATCC 59.346 45.833 2.48 2.48 33.66 3.36
2162 2563 5.072329 CCCTTGTGTATGTTAGAGGATCCAT 59.928 44.000 15.82 4.46 33.66 3.41
2163 2564 6.409695 CCCTTGTGTATGTTAGAGGATCCATT 60.410 42.308 15.82 3.70 33.66 3.16
2165 2566 7.227512 CCTTGTGTATGTTAGAGGATCCATTTC 59.772 40.741 15.82 2.55 33.66 2.17
2166 2567 6.591935 TGTGTATGTTAGAGGATCCATTTCC 58.408 40.000 15.82 0.00 33.66 3.13
2167 2568 5.696724 GTGTATGTTAGAGGATCCATTTCCG 59.303 44.000 15.82 0.00 40.94 4.30
2169 2570 4.402056 TGTTAGAGGATCCATTTCCGTC 57.598 45.455 15.82 0.07 40.94 4.79
2170 2571 3.772572 TGTTAGAGGATCCATTTCCGTCA 59.227 43.478 15.82 0.00 40.94 4.35
2191 4343 0.392595 GAGGACGCCAAGTAAAGGGG 60.393 60.000 0.00 0.00 44.04 4.79
2195 4347 2.563297 CGCCAAGTAAAGGGGTTCC 58.437 57.895 0.00 0.00 34.64 3.62
2200 4352 2.913617 CCAAGTAAAGGGGTTCCTCTCT 59.086 50.000 0.00 0.00 44.07 3.10
2201 4353 4.101856 CCAAGTAAAGGGGTTCCTCTCTA 58.898 47.826 0.00 0.00 44.07 2.43
2227 4379 1.178276 ATTGGCGCCGGATTAAACAA 58.822 45.000 23.90 7.29 0.00 2.83
2233 4385 2.596862 GCGCCGGATTAAACAAATTGTC 59.403 45.455 5.05 0.00 0.00 3.18
2248 4400 5.758296 ACAAATTGTCACTCGCTTTCTTCTA 59.242 36.000 0.00 0.00 0.00 2.10
2262 4414 1.203994 TCTTCTAACGGTGCCTGCTAC 59.796 52.381 0.00 0.00 0.00 3.58
2263 4415 1.204941 CTTCTAACGGTGCCTGCTACT 59.795 52.381 0.00 0.00 0.00 2.57
2264 4416 0.815734 TCTAACGGTGCCTGCTACTC 59.184 55.000 0.00 0.00 0.00 2.59
2265 4417 0.530744 CTAACGGTGCCTGCTACTCA 59.469 55.000 0.00 0.00 0.00 3.41
2266 4418 0.245539 TAACGGTGCCTGCTACTCAC 59.754 55.000 0.00 0.00 0.00 3.51
2267 4419 2.507102 CGGTGCCTGCTACTCACG 60.507 66.667 0.00 0.00 0.00 4.35
2268 4420 2.657237 GGTGCCTGCTACTCACGT 59.343 61.111 0.00 0.00 0.00 4.49
2269 4421 1.004918 GGTGCCTGCTACTCACGTT 60.005 57.895 0.00 0.00 0.00 3.99
2270 4422 0.602905 GGTGCCTGCTACTCACGTTT 60.603 55.000 0.00 0.00 0.00 3.60
2271 4423 1.226746 GTGCCTGCTACTCACGTTTT 58.773 50.000 0.00 0.00 0.00 2.43
2272 4424 2.409975 GTGCCTGCTACTCACGTTTTA 58.590 47.619 0.00 0.00 0.00 1.52
2273 4425 2.803956 GTGCCTGCTACTCACGTTTTAA 59.196 45.455 0.00 0.00 0.00 1.52
2274 4426 3.249080 GTGCCTGCTACTCACGTTTTAAA 59.751 43.478 0.00 0.00 0.00 1.52
2275 4427 4.069304 TGCCTGCTACTCACGTTTTAAAT 58.931 39.130 0.00 0.00 0.00 1.40
2276 4428 4.517453 TGCCTGCTACTCACGTTTTAAATT 59.483 37.500 0.00 0.00 0.00 1.82
2277 4429 5.701750 TGCCTGCTACTCACGTTTTAAATTA 59.298 36.000 0.00 0.00 0.00 1.40
2278 4430 6.373216 TGCCTGCTACTCACGTTTTAAATTAT 59.627 34.615 0.00 0.00 0.00 1.28
2279 4431 6.687105 GCCTGCTACTCACGTTTTAAATTATG 59.313 38.462 0.00 0.00 0.00 1.90
2280 4432 7.413657 GCCTGCTACTCACGTTTTAAATTATGA 60.414 37.037 0.00 0.00 0.00 2.15
2281 4433 8.116753 CCTGCTACTCACGTTTTAAATTATGAG 58.883 37.037 16.01 16.01 39.56 2.90
2282 4434 8.766000 TGCTACTCACGTTTTAAATTATGAGA 57.234 30.769 21.08 5.16 37.57 3.27
2283 4435 8.653338 TGCTACTCACGTTTTAAATTATGAGAC 58.347 33.333 21.08 13.77 37.57 3.36
2284 4436 7.839837 GCTACTCACGTTTTAAATTATGAGACG 59.160 37.037 21.08 14.22 37.57 4.18
2285 4437 7.057149 ACTCACGTTTTAAATTATGAGACGG 57.943 36.000 21.08 8.35 37.57 4.79
2286 4438 6.869913 ACTCACGTTTTAAATTATGAGACGGA 59.130 34.615 21.08 11.01 37.57 4.69
2287 4439 7.063074 ACTCACGTTTTAAATTATGAGACGGAG 59.937 37.037 21.08 18.06 37.57 4.63
2288 4440 6.311935 TCACGTTTTAAATTATGAGACGGAGG 59.688 38.462 10.16 1.82 33.74 4.30
2289 4441 5.583457 ACGTTTTAAATTATGAGACGGAGGG 59.417 40.000 10.16 0.00 33.74 4.30
2290 4442 5.813672 CGTTTTAAATTATGAGACGGAGGGA 59.186 40.000 0.00 0.00 0.00 4.20
2291 4443 6.018994 CGTTTTAAATTATGAGACGGAGGGAG 60.019 42.308 0.00 0.00 0.00 4.30
2292 4444 6.555463 TTTAAATTATGAGACGGAGGGAGT 57.445 37.500 0.00 0.00 0.00 3.85
2293 4445 7.664552 TTTAAATTATGAGACGGAGGGAGTA 57.335 36.000 0.00 0.00 0.00 2.59
2307 4459 4.565652 GGAGGGAGTAGCTTGTTTCATTCA 60.566 45.833 0.00 0.00 0.00 2.57
2308 4460 4.327680 AGGGAGTAGCTTGTTTCATTCAC 58.672 43.478 0.00 0.00 0.00 3.18
2318 4470 4.014569 TGTTTCATTCACGGATTCCTCA 57.985 40.909 0.30 0.00 0.00 3.86
2337 4489 4.822350 CCTCACGTCTCCTGACTATCATAA 59.178 45.833 0.00 0.00 40.86 1.90
2342 4494 7.665974 TCACGTCTCCTGACTATCATAATACAT 59.334 37.037 0.00 0.00 40.86 2.29
2387 4545 8.803397 ACTTAAACGCTCTTATATTTCCCTTT 57.197 30.769 0.00 0.00 0.00 3.11
2388 4546 8.890718 ACTTAAACGCTCTTATATTTCCCTTTC 58.109 33.333 0.00 0.00 0.00 2.62
2430 4592 9.226345 CAACTTTAGTTCTTGTTTGAAGATGTC 57.774 33.333 0.00 0.00 35.83 3.06
2433 4595 9.226345 CTTTAGTTCTTGTTTGAAGATGTCAAC 57.774 33.333 0.00 0.00 46.09 3.18
2440 4602 7.706179 TCTTGTTTGAAGATGTCAACCAATTTC 59.294 33.333 0.41 0.00 44.67 2.17
2446 4608 7.555087 TGAAGATGTCAACCAATTTCTTTGTT 58.445 30.769 0.00 0.00 31.51 2.83
2492 4654 2.114616 CTCTCCTGCCTAACCTGTCAT 58.885 52.381 0.00 0.00 0.00 3.06
2501 4663 2.673368 CCTAACCTGTCATGTTCTTCGC 59.327 50.000 0.00 0.00 0.00 4.70
2503 4665 0.321653 ACCTGTCATGTTCTTCGCCC 60.322 55.000 0.00 0.00 0.00 6.13
2515 4677 0.611896 CTTCGCCCCATGTTTTCCCT 60.612 55.000 0.00 0.00 0.00 4.20
2516 4678 0.897863 TTCGCCCCATGTTTTCCCTG 60.898 55.000 0.00 0.00 0.00 4.45
2517 4679 2.981302 GCCCCATGTTTTCCCTGC 59.019 61.111 0.00 0.00 0.00 4.85
2518 4680 1.610379 GCCCCATGTTTTCCCTGCT 60.610 57.895 0.00 0.00 0.00 4.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 3.007940 CACTGTGACATAGGGTGGAAGAA 59.992 47.826 0.32 0.00 0.00 2.52
42 44 2.567169 CTCACTGTGACATAGGGTGGAA 59.433 50.000 6.36 0.00 0.00 3.53
53 55 5.335819 GGTCTAAGTTACTCCTCACTGTGAC 60.336 48.000 6.36 0.00 0.00 3.67
54 56 4.765856 GGTCTAAGTTACTCCTCACTGTGA 59.234 45.833 10.50 10.50 0.00 3.58
59 61 4.523558 ACACTGGTCTAAGTTACTCCTCAC 59.476 45.833 0.00 0.00 0.00 3.51
62 64 4.737578 TGACACTGGTCTAAGTTACTCCT 58.262 43.478 0.00 0.00 44.61 3.69
63 65 5.411781 CATGACACTGGTCTAAGTTACTCC 58.588 45.833 0.00 0.00 44.61 3.85
71 73 5.612725 TCATATGCATGACACTGGTCTAA 57.387 39.130 10.16 0.00 44.61 2.10
74 76 5.545588 AGTATCATATGCATGACACTGGTC 58.454 41.667 10.16 0.00 45.20 4.02
77 79 5.579904 GGCTAGTATCATATGCATGACACTG 59.420 44.000 10.16 2.21 46.13 3.66
81 83 7.551585 ACTTAGGCTAGTATCATATGCATGAC 58.448 38.462 10.16 0.00 43.89 3.06
82 84 7.724490 ACTTAGGCTAGTATCATATGCATGA 57.276 36.000 10.16 0.00 45.15 3.07
170 172 8.838009 GCGCTTTTTAAGACAAAATAAGTCTAC 58.162 33.333 0.00 0.00 45.11 2.59
180 182 7.640852 TGTAACATAGCGCTTTTTAAGACAAA 58.359 30.769 18.68 0.00 0.00 2.83
184 186 9.763465 GTTATTGTAACATAGCGCTTTTTAAGA 57.237 29.630 18.68 0.00 0.00 2.10
185 187 9.549509 TGTTATTGTAACATAGCGCTTTTTAAG 57.450 29.630 18.68 0.00 0.00 1.85
188 190 9.498307 GTATGTTATTGTAACATAGCGCTTTTT 57.502 29.630 18.68 9.25 41.97 1.94
189 191 8.889717 AGTATGTTATTGTAACATAGCGCTTTT 58.110 29.630 18.68 9.66 41.97 2.27
192 194 6.645415 GGAGTATGTTATTGTAACATAGCGCT 59.355 38.462 17.26 17.26 41.97 5.92
193 195 6.128634 GGGAGTATGTTATTGTAACATAGCGC 60.129 42.308 18.03 16.60 41.97 5.92
194 196 7.152645 AGGGAGTATGTTATTGTAACATAGCG 58.847 38.462 18.03 0.00 41.97 4.26
196 198 8.871125 AGGAGGGAGTATGTTATTGTAACATAG 58.129 37.037 18.03 0.00 41.97 2.23
197 199 8.792830 AGGAGGGAGTATGTTATTGTAACATA 57.207 34.615 15.08 15.08 40.87 2.29
206 208 5.731924 AGATGGAAGGAGGGAGTATGTTAT 58.268 41.667 0.00 0.00 0.00 1.89
211 213 7.146851 CCCTATATAGATGGAAGGAGGGAGTAT 60.147 44.444 11.53 0.00 44.48 2.12
251 253 5.221362 TGTCAATAGTCAAAGACCGTCTTGA 60.221 40.000 14.56 10.96 36.71 3.02
285 287 8.861033 ATTTTCACATTATGCATGTCATGTAC 57.139 30.769 10.16 0.00 43.17 2.90
316 318 9.778993 ATTCGTATGTGAAAGAAGATTTCAATG 57.221 29.630 4.71 0.00 39.76 2.82
324 326 6.128661 CCGTCAAATTCGTATGTGAAAGAAGA 60.129 38.462 0.00 0.00 29.80 2.87
347 349 3.058570 TGCAACTTACACAAAGCATACCG 60.059 43.478 0.00 0.00 38.93 4.02
349 351 5.460646 ACATGCAACTTACACAAAGCATAC 58.539 37.500 0.00 0.00 40.38 2.39
351 353 4.037803 TGACATGCAACTTACACAAAGCAT 59.962 37.500 0.00 0.00 42.82 3.79
358 360 9.225201 CAACAATATATGACATGCAACTTACAC 57.775 33.333 0.00 0.00 0.00 2.90
381 383 5.831997 ACTTTGACCAAATGTTAGAGCAAC 58.168 37.500 0.00 0.00 37.67 4.17
418 420 6.978674 TCCATCTATATAGGGCCTAATTCG 57.021 41.667 18.91 7.12 0.00 3.34
420 422 7.439263 TCCTTCCATCTATATAGGGCCTAATT 58.561 38.462 18.91 10.47 0.00 1.40
460 462 8.812972 TGTGACAAGTAATTAATGAGAGGTAGT 58.187 33.333 6.54 0.00 0.00 2.73
461 463 9.823647 ATGTGACAAGTAATTAATGAGAGGTAG 57.176 33.333 6.54 0.00 0.00 3.18
466 468 9.665719 TGCTTATGTGACAAGTAATTAATGAGA 57.334 29.630 6.54 0.00 0.00 3.27
467 469 9.708222 GTGCTTATGTGACAAGTAATTAATGAG 57.292 33.333 6.54 0.00 0.00 2.90
468 470 9.225436 TGTGCTTATGTGACAAGTAATTAATGA 57.775 29.630 6.54 0.00 0.00 2.57
469 471 9.838975 TTGTGCTTATGTGACAAGTAATTAATG 57.161 29.630 0.00 0.00 0.00 1.90
473 475 9.762933 AAATTTGTGCTTATGTGACAAGTAATT 57.237 25.926 0.00 0.00 31.50 1.40
474 476 9.762933 AAAATTTGTGCTTATGTGACAAGTAAT 57.237 25.926 0.00 0.00 31.50 1.89
475 477 9.593134 AAAAATTTGTGCTTATGTGACAAGTAA 57.407 25.926 0.00 0.00 31.50 2.24
498 500 5.682943 AGTAACATAGCGCACTTCAAAAA 57.317 34.783 11.47 0.00 0.00 1.94
499 501 5.163893 GCTAGTAACATAGCGCACTTCAAAA 60.164 40.000 11.47 0.00 38.90 2.44
500 502 4.328983 GCTAGTAACATAGCGCACTTCAAA 59.671 41.667 11.47 0.00 38.90 2.69
501 503 3.863424 GCTAGTAACATAGCGCACTTCAA 59.137 43.478 11.47 0.00 38.90 2.69
502 504 3.444916 GCTAGTAACATAGCGCACTTCA 58.555 45.455 11.47 0.00 38.90 3.02
511 513 8.351461 GTGGGAGTAACTTAGCTAGTAACATAG 58.649 40.741 0.00 0.00 35.54 2.23
512 514 8.057623 AGTGGGAGTAACTTAGCTAGTAACATA 58.942 37.037 0.00 0.00 35.54 2.29
513 515 6.896307 AGTGGGAGTAACTTAGCTAGTAACAT 59.104 38.462 0.00 0.00 35.54 2.71
514 516 6.251471 AGTGGGAGTAACTTAGCTAGTAACA 58.749 40.000 0.00 0.00 35.54 2.41
515 517 6.772360 AGTGGGAGTAACTTAGCTAGTAAC 57.228 41.667 0.00 0.00 35.54 2.50
516 518 8.277197 TCATAGTGGGAGTAACTTAGCTAGTAA 58.723 37.037 0.00 0.00 35.54 2.24
517 519 7.718753 GTCATAGTGGGAGTAACTTAGCTAGTA 59.281 40.741 0.00 0.00 35.54 1.82
518 520 6.546772 GTCATAGTGGGAGTAACTTAGCTAGT 59.453 42.308 0.00 0.00 39.32 2.57
519 521 6.773685 AGTCATAGTGGGAGTAACTTAGCTAG 59.226 42.308 0.00 0.00 0.00 3.42
520 522 6.670617 AGTCATAGTGGGAGTAACTTAGCTA 58.329 40.000 0.00 0.00 0.00 3.32
521 523 5.520751 AGTCATAGTGGGAGTAACTTAGCT 58.479 41.667 0.00 0.00 0.00 3.32
533 535 4.475345 AGCCTTAGACTAGTCATAGTGGG 58.525 47.826 24.44 16.32 42.46 4.61
534 536 6.300703 AGTAGCCTTAGACTAGTCATAGTGG 58.699 44.000 24.44 17.60 42.46 4.00
535 537 6.993308 TGAGTAGCCTTAGACTAGTCATAGTG 59.007 42.308 24.44 14.13 42.42 2.74
541 543 6.428771 CCACTATGAGTAGCCTTAGACTAGTC 59.571 46.154 15.41 15.41 39.51 2.59
542 544 6.300703 CCACTATGAGTAGCCTTAGACTAGT 58.699 44.000 0.00 0.00 0.00 2.57
543 545 5.708230 CCCACTATGAGTAGCCTTAGACTAG 59.292 48.000 0.00 0.00 0.00 2.57
544 546 5.457778 CCCCACTATGAGTAGCCTTAGACTA 60.458 48.000 0.00 0.00 0.00 2.59
545 547 4.475345 CCCACTATGAGTAGCCTTAGACT 58.525 47.826 0.00 0.00 0.00 3.24
546 548 3.574826 CCCCACTATGAGTAGCCTTAGAC 59.425 52.174 0.00 0.00 0.00 2.59
547 549 3.465966 TCCCCACTATGAGTAGCCTTAGA 59.534 47.826 0.00 0.00 0.00 2.10
548 550 3.829601 CTCCCCACTATGAGTAGCCTTAG 59.170 52.174 0.00 0.00 0.00 2.18
549 551 3.206866 ACTCCCCACTATGAGTAGCCTTA 59.793 47.826 0.00 0.00 39.96 2.69
550 552 2.022918 ACTCCCCACTATGAGTAGCCTT 60.023 50.000 0.00 0.00 39.96 4.35
551 553 1.576272 ACTCCCCACTATGAGTAGCCT 59.424 52.381 0.00 0.00 39.96 4.58
552 554 2.089600 ACTCCCCACTATGAGTAGCC 57.910 55.000 0.00 0.00 39.96 3.93
553 555 3.958798 TGTTACTCCCCACTATGAGTAGC 59.041 47.826 6.58 6.58 43.04 3.58
554 556 7.175293 GTCTATGTTACTCCCCACTATGAGTAG 59.825 44.444 0.00 0.00 43.04 2.57
555 557 7.002879 GTCTATGTTACTCCCCACTATGAGTA 58.997 42.308 0.00 0.00 41.80 2.59
556 558 5.834204 GTCTATGTTACTCCCCACTATGAGT 59.166 44.000 0.00 0.00 43.85 3.41
557 559 6.071984 AGTCTATGTTACTCCCCACTATGAG 58.928 44.000 0.00 0.00 34.73 2.90
558 560 6.027025 AGTCTATGTTACTCCCCACTATGA 57.973 41.667 0.00 0.00 0.00 2.15
559 561 7.005296 ACTAGTCTATGTTACTCCCCACTATG 58.995 42.308 0.00 0.00 0.00 2.23
560 562 7.005296 CACTAGTCTATGTTACTCCCCACTAT 58.995 42.308 0.00 0.00 0.00 2.12
561 563 6.069206 ACACTAGTCTATGTTACTCCCCACTA 60.069 42.308 0.00 0.00 0.00 2.74
562 564 5.202004 CACTAGTCTATGTTACTCCCCACT 58.798 45.833 0.00 0.00 0.00 4.00
563 565 4.954826 ACACTAGTCTATGTTACTCCCCAC 59.045 45.833 0.00 0.00 0.00 4.61
564 566 5.198965 GACACTAGTCTATGTTACTCCCCA 58.801 45.833 0.00 0.00 41.64 4.96
565 567 5.198965 TGACACTAGTCTATGTTACTCCCC 58.801 45.833 0.00 0.00 45.20 4.81
566 568 6.736243 GCATGACACTAGTCTATGTTACTCCC 60.736 46.154 0.00 0.00 45.20 4.30
567 569 6.183360 TGCATGACACTAGTCTATGTTACTCC 60.183 42.308 0.00 0.00 45.20 3.85
568 570 6.796426 TGCATGACACTAGTCTATGTTACTC 58.204 40.000 0.00 0.00 45.20 2.59
569 571 6.775594 TGCATGACACTAGTCTATGTTACT 57.224 37.500 0.00 0.00 45.20 2.24
570 572 9.133627 CATATGCATGACACTAGTCTATGTTAC 57.866 37.037 10.16 0.00 45.20 2.50
571 573 9.077885 TCATATGCATGACACTAGTCTATGTTA 57.922 33.333 10.16 0.00 45.20 2.41
572 574 7.955918 TCATATGCATGACACTAGTCTATGTT 58.044 34.615 10.16 0.00 45.20 2.71
573 575 7.530426 TCATATGCATGACACTAGTCTATGT 57.470 36.000 10.16 0.00 45.20 2.29
602 604 9.809395 TGCACTATGAAGGTAGTAATATAGACT 57.191 33.333 0.00 0.00 33.29 3.24
609 611 9.379791 GTTACTTTGCACTATGAAGGTAGTAAT 57.620 33.333 0.00 0.00 33.29 1.89
610 612 8.369424 TGTTACTTTGCACTATGAAGGTAGTAA 58.631 33.333 0.00 0.00 33.29 2.24
611 613 7.898918 TGTTACTTTGCACTATGAAGGTAGTA 58.101 34.615 0.00 0.00 33.29 1.82
612 614 6.765403 TGTTACTTTGCACTATGAAGGTAGT 58.235 36.000 0.00 0.00 35.34 2.73
613 615 7.849804 ATGTTACTTTGCACTATGAAGGTAG 57.150 36.000 0.00 0.00 0.00 3.18
614 616 9.727859 TTTATGTTACTTTGCACTATGAAGGTA 57.272 29.630 0.00 0.00 0.00 3.08
615 617 8.630054 TTTATGTTACTTTGCACTATGAAGGT 57.370 30.769 0.00 0.00 0.00 3.50
616 618 9.906660 TTTTTATGTTACTTTGCACTATGAAGG 57.093 29.630 0.00 0.00 0.00 3.46
663 665 9.890629 AGCAGAATGAGTCTACATTGTAATAAA 57.109 29.630 0.00 0.00 40.03 1.40
664 666 9.890629 AAGCAGAATGAGTCTACATTGTAATAA 57.109 29.630 0.00 0.00 40.03 1.40
665 667 9.890629 AAAGCAGAATGAGTCTACATTGTAATA 57.109 29.630 0.00 0.00 40.03 0.98
666 668 8.671921 CAAAGCAGAATGAGTCTACATTGTAAT 58.328 33.333 0.00 0.00 40.03 1.89
667 669 7.119699 CCAAAGCAGAATGAGTCTACATTGTAA 59.880 37.037 0.00 0.00 40.03 2.41
668 670 6.595326 CCAAAGCAGAATGAGTCTACATTGTA 59.405 38.462 0.00 0.00 40.03 2.41
669 671 5.413833 CCAAAGCAGAATGAGTCTACATTGT 59.586 40.000 0.00 0.00 40.03 2.71
670 672 5.645067 TCCAAAGCAGAATGAGTCTACATTG 59.355 40.000 0.00 0.00 40.03 2.82
671 673 5.809001 TCCAAAGCAGAATGAGTCTACATT 58.191 37.500 0.00 0.00 42.19 2.71
672 674 5.426689 TCCAAAGCAGAATGAGTCTACAT 57.573 39.130 0.00 0.00 39.69 2.29
673 675 4.890158 TCCAAAGCAGAATGAGTCTACA 57.110 40.909 0.00 0.00 39.69 2.74
674 676 6.749923 AAATCCAAAGCAGAATGAGTCTAC 57.250 37.500 0.00 0.00 39.69 2.59
675 677 6.716628 ACAAAATCCAAAGCAGAATGAGTCTA 59.283 34.615 0.00 0.00 39.69 2.59
676 678 5.537674 ACAAAATCCAAAGCAGAATGAGTCT 59.462 36.000 0.00 0.00 39.69 3.24
677 679 5.776744 ACAAAATCCAAAGCAGAATGAGTC 58.223 37.500 0.00 0.00 39.69 3.36
678 680 5.796424 ACAAAATCCAAAGCAGAATGAGT 57.204 34.783 0.00 0.00 39.69 3.41
679 681 7.816031 ACATAACAAAATCCAAAGCAGAATGAG 59.184 33.333 0.00 0.00 39.69 2.90
680 682 7.669427 ACATAACAAAATCCAAAGCAGAATGA 58.331 30.769 0.00 0.00 39.69 2.57
681 683 7.894376 ACATAACAAAATCCAAAGCAGAATG 57.106 32.000 0.00 0.00 40.87 2.67
682 684 9.423061 GTAACATAACAAAATCCAAAGCAGAAT 57.577 29.630 0.00 0.00 0.00 2.40
683 685 8.417106 TGTAACATAACAAAATCCAAAGCAGAA 58.583 29.630 0.00 0.00 0.00 3.02
684 686 7.946207 TGTAACATAACAAAATCCAAAGCAGA 58.054 30.769 0.00 0.00 0.00 4.26
685 687 7.867403 ACTGTAACATAACAAAATCCAAAGCAG 59.133 33.333 0.00 0.00 0.00 4.24
686 688 7.721402 ACTGTAACATAACAAAATCCAAAGCA 58.279 30.769 0.00 0.00 0.00 3.91
687 689 9.685828 TTACTGTAACATAACAAAATCCAAAGC 57.314 29.630 0.00 0.00 0.00 3.51
732 734 9.712305 GCATGTAGTTAATAAGGAGATATGTGT 57.288 33.333 0.00 0.00 0.00 3.72
733 735 9.155975 GGCATGTAGTTAATAAGGAGATATGTG 57.844 37.037 0.00 0.00 0.00 3.21
734 736 8.880244 TGGCATGTAGTTAATAAGGAGATATGT 58.120 33.333 0.00 0.00 0.00 2.29
735 737 9.155975 GTGGCATGTAGTTAATAAGGAGATATG 57.844 37.037 0.00 0.00 0.00 1.78
736 738 8.880244 TGTGGCATGTAGTTAATAAGGAGATAT 58.120 33.333 0.00 0.00 0.00 1.63
738 740 7.136822 TGTGGCATGTAGTTAATAAGGAGAT 57.863 36.000 0.00 0.00 0.00 2.75
745 747 8.402472 GTTTGCTTATGTGGCATGTAGTTAATA 58.598 33.333 0.00 0.00 39.54 0.98
753 755 5.653769 AGATAAGTTTGCTTATGTGGCATGT 59.346 36.000 4.79 0.00 45.16 3.21
754 756 6.140303 AGATAAGTTTGCTTATGTGGCATG 57.860 37.500 4.79 0.00 45.16 4.06
755 757 6.377996 TCAAGATAAGTTTGCTTATGTGGCAT 59.622 34.615 4.79 0.00 45.16 4.40
764 766 9.744468 ATAACGTTTTTCAAGATAAGTTTGCTT 57.256 25.926 5.91 0.00 38.66 3.91
765 767 9.180678 CATAACGTTTTTCAAGATAAGTTTGCT 57.819 29.630 5.91 0.00 0.00 3.91
766 768 8.964150 ACATAACGTTTTTCAAGATAAGTTTGC 58.036 29.630 5.91 0.00 0.00 3.68
794 796 9.884814 AGTCATAGTGGGAGTAATTTATCTAGT 57.115 33.333 0.00 0.00 0.00 2.57
797 799 8.808092 GCTAGTCATAGTGGGAGTAATTTATCT 58.192 37.037 0.00 0.00 0.00 1.98
798 800 8.035984 GGCTAGTCATAGTGGGAGTAATTTATC 58.964 40.741 0.00 0.00 0.00 1.75
799 801 7.735321 AGGCTAGTCATAGTGGGAGTAATTTAT 59.265 37.037 0.00 0.00 0.00 1.40
800 802 7.073854 AGGCTAGTCATAGTGGGAGTAATTTA 58.926 38.462 0.00 0.00 0.00 1.40
801 803 5.905913 AGGCTAGTCATAGTGGGAGTAATTT 59.094 40.000 0.00 0.00 0.00 1.82
802 804 5.468658 AGGCTAGTCATAGTGGGAGTAATT 58.531 41.667 0.00 0.00 0.00 1.40
803 805 5.081315 AGGCTAGTCATAGTGGGAGTAAT 57.919 43.478 0.00 0.00 0.00 1.89
804 806 4.537945 AGGCTAGTCATAGTGGGAGTAA 57.462 45.455 0.00 0.00 0.00 2.24
805 807 5.658198 TTAGGCTAGTCATAGTGGGAGTA 57.342 43.478 0.00 0.00 0.00 2.59
806 808 4.537945 TTAGGCTAGTCATAGTGGGAGT 57.462 45.455 0.00 0.00 0.00 3.85
807 809 5.046950 GGATTTAGGCTAGTCATAGTGGGAG 60.047 48.000 0.00 0.00 0.00 4.30
808 810 4.838986 GGATTTAGGCTAGTCATAGTGGGA 59.161 45.833 0.00 0.00 0.00 4.37
809 811 4.020128 GGGATTTAGGCTAGTCATAGTGGG 60.020 50.000 0.00 0.00 0.00 4.61
810 812 4.593206 TGGGATTTAGGCTAGTCATAGTGG 59.407 45.833 0.00 0.00 0.00 4.00
811 813 5.542779 GTGGGATTTAGGCTAGTCATAGTG 58.457 45.833 0.00 0.00 0.00 2.74
812 814 4.281182 CGTGGGATTTAGGCTAGTCATAGT 59.719 45.833 0.00 0.00 0.00 2.12
813 815 4.810790 CGTGGGATTTAGGCTAGTCATAG 58.189 47.826 0.00 0.00 0.00 2.23
814 816 3.006537 GCGTGGGATTTAGGCTAGTCATA 59.993 47.826 0.00 0.00 0.00 2.15
815 817 2.224305 GCGTGGGATTTAGGCTAGTCAT 60.224 50.000 0.00 0.00 0.00 3.06
816 818 1.138266 GCGTGGGATTTAGGCTAGTCA 59.862 52.381 0.00 0.00 0.00 3.41
817 819 1.867166 GCGTGGGATTTAGGCTAGTC 58.133 55.000 0.00 0.00 0.00 2.59
818 820 0.104304 CGCGTGGGATTTAGGCTAGT 59.896 55.000 0.00 0.00 0.00 2.57
819 821 0.600255 CCGCGTGGGATTTAGGCTAG 60.600 60.000 7.26 0.00 38.47 3.42
820 822 1.444250 CCGCGTGGGATTTAGGCTA 59.556 57.895 7.26 0.00 38.47 3.93
821 823 2.189521 CCGCGTGGGATTTAGGCT 59.810 61.111 7.26 0.00 38.47 4.58
822 824 3.583086 GCCGCGTGGGATTTAGGC 61.583 66.667 18.41 0.00 38.47 3.93
823 825 2.124901 TGCCGCGTGGGATTTAGG 60.125 61.111 18.41 0.00 38.47 2.69
824 826 2.823829 GCTGCCGCGTGGGATTTAG 61.824 63.158 18.41 2.82 38.47 1.85
825 827 2.822255 GCTGCCGCGTGGGATTTA 60.822 61.111 18.41 0.00 38.47 1.40
844 846 4.222336 TGGTTGGAACTTGGAATGAATGT 58.778 39.130 0.00 0.00 0.00 2.71
848 850 3.831911 GGAATGGTTGGAACTTGGAATGA 59.168 43.478 0.00 0.00 0.00 2.57
867 875 1.661463 AGAGATGGTTGGAGCTGGAA 58.339 50.000 0.00 0.00 0.00 3.53
868 876 1.556911 GAAGAGATGGTTGGAGCTGGA 59.443 52.381 0.00 0.00 0.00 3.86
869 877 1.407989 GGAAGAGATGGTTGGAGCTGG 60.408 57.143 0.00 0.00 0.00 4.85
870 878 1.280133 TGGAAGAGATGGTTGGAGCTG 59.720 52.381 0.00 0.00 0.00 4.24
871 879 1.558756 CTGGAAGAGATGGTTGGAGCT 59.441 52.381 0.00 0.00 34.07 4.09
872 880 2.016096 GCTGGAAGAGATGGTTGGAGC 61.016 57.143 0.00 0.00 34.07 4.70
873 881 1.558756 AGCTGGAAGAGATGGTTGGAG 59.441 52.381 0.00 0.00 34.07 3.86
874 882 1.556911 GAGCTGGAAGAGATGGTTGGA 59.443 52.381 0.00 0.00 34.07 3.53
875 883 1.407989 GGAGCTGGAAGAGATGGTTGG 60.408 57.143 0.00 0.00 34.07 3.77
876 884 1.280133 TGGAGCTGGAAGAGATGGTTG 59.720 52.381 0.00 0.00 34.07 3.77
877 885 1.280421 GTGGAGCTGGAAGAGATGGTT 59.720 52.381 0.00 0.00 34.07 3.67
878 886 0.908198 GTGGAGCTGGAAGAGATGGT 59.092 55.000 0.00 0.00 34.07 3.55
879 887 0.179936 GGTGGAGCTGGAAGAGATGG 59.820 60.000 0.00 0.00 34.07 3.51
880 888 0.907486 TGGTGGAGCTGGAAGAGATG 59.093 55.000 0.00 0.00 34.07 2.90
881 889 0.908198 GTGGTGGAGCTGGAAGAGAT 59.092 55.000 0.00 0.00 34.07 2.75
882 890 1.536073 CGTGGTGGAGCTGGAAGAGA 61.536 60.000 0.00 0.00 34.07 3.10
883 891 1.079543 CGTGGTGGAGCTGGAAGAG 60.080 63.158 0.00 0.00 34.07 2.85
884 892 3.059982 CGTGGTGGAGCTGGAAGA 58.940 61.111 0.00 0.00 34.07 2.87
885 893 2.743928 GCGTGGTGGAGCTGGAAG 60.744 66.667 0.00 0.00 0.00 3.46
911 920 1.749334 GATCTCCCGATGGGTTCGCT 61.749 60.000 1.04 0.00 46.71 4.93
932 941 0.737715 ATGGAGCTCGTCGTTGCTTC 60.738 55.000 7.83 13.26 39.91 3.86
936 945 0.388520 TGTGATGGAGCTCGTCGTTG 60.389 55.000 7.83 0.00 34.17 4.10
937 946 0.388649 GTGTGATGGAGCTCGTCGTT 60.389 55.000 7.83 0.00 34.17 3.85
938 947 1.213013 GTGTGATGGAGCTCGTCGT 59.787 57.895 7.83 0.00 34.17 4.34
940 949 1.071605 GTTGTGTGATGGAGCTCGTC 58.928 55.000 7.83 9.12 0.00 4.20
943 952 1.067565 TCGAGTTGTGTGATGGAGCTC 60.068 52.381 4.71 4.71 0.00 4.09
953 962 1.738350 ACGAGATCGATCGAGTTGTGT 59.262 47.619 23.84 14.28 45.56 3.72
955 964 1.738350 ACACGAGATCGATCGAGTTGT 59.262 47.619 23.84 18.54 42.57 3.32
956 965 2.460243 ACACGAGATCGATCGAGTTG 57.540 50.000 23.84 17.92 42.57 3.16
958 967 2.281517 AGAACACGAGATCGATCGAGT 58.718 47.619 23.84 18.92 46.19 4.18
965 981 4.035091 AGAGATCAAGAGAACACGAGATCG 59.965 45.833 0.00 0.00 46.33 3.69
966 982 5.499139 AGAGATCAAGAGAACACGAGATC 57.501 43.478 0.00 0.00 33.79 2.75
973 989 4.528206 TGTAGCCAAGAGATCAAGAGAACA 59.472 41.667 0.00 0.00 0.00 3.18
974 990 5.078411 TGTAGCCAAGAGATCAAGAGAAC 57.922 43.478 0.00 0.00 0.00 3.01
980 996 4.445305 CCATGGATGTAGCCAAGAGATCAA 60.445 45.833 5.56 0.00 42.16 2.57
997 1036 4.731853 TCCTCCCGTGGCCATGGA 62.732 66.667 40.63 30.56 39.90 3.41
1008 1047 2.284995 AGCACCACTCCTCCTCCC 60.285 66.667 0.00 0.00 0.00 4.30
1086 1125 2.180769 CCGCATCTCACCGACGAA 59.819 61.111 0.00 0.00 0.00 3.85
1273 1312 2.097466 CGATGCTATTTTCTTGGGCGTT 59.903 45.455 0.00 0.00 0.00 4.84
1274 1313 1.670811 CGATGCTATTTTCTTGGGCGT 59.329 47.619 0.00 0.00 0.00 5.68
1276 1315 2.945668 AGTCGATGCTATTTTCTTGGGC 59.054 45.455 0.00 0.00 0.00 5.36
1277 1316 4.260375 CGAAGTCGATGCTATTTTCTTGGG 60.260 45.833 0.00 0.00 43.02 4.12
1355 1400 2.407428 CGCCAGTACTCGAGCCTCA 61.407 63.158 13.61 0.00 0.00 3.86
1428 1473 1.062206 GTCATCCTCGTCGTCGTCC 59.938 63.158 1.33 0.00 38.33 4.79
1443 1488 0.596577 CGAAGTCGGAGAACCAGTCA 59.403 55.000 0.00 0.00 39.69 3.41
1462 1507 2.162408 CACGGCAAGGAAGAAGATTTCC 59.838 50.000 0.00 0.00 45.71 3.13
1490 1535 0.379669 GATGATTGCCAACGCCTCTG 59.620 55.000 0.00 0.00 0.00 3.35
1496 1541 1.536766 ACAGTGTGATGATTGCCAACG 59.463 47.619 0.00 0.00 0.00 4.10
1504 1549 4.201714 CGTGCGAATTTACAGTGTGATGAT 60.202 41.667 5.88 0.00 0.00 2.45
1505 1550 3.122780 CGTGCGAATTTACAGTGTGATGA 59.877 43.478 5.88 0.00 0.00 2.92
1506 1551 3.122780 TCGTGCGAATTTACAGTGTGATG 59.877 43.478 5.88 0.00 0.00 3.07
1541 1586 6.019801 CCACGATAAAACAGGAGAGAAATACG 60.020 42.308 0.00 0.00 0.00 3.06
1544 1589 5.186198 CCCACGATAAAACAGGAGAGAAAT 58.814 41.667 0.00 0.00 0.00 2.17
1545 1590 4.564821 CCCCACGATAAAACAGGAGAGAAA 60.565 45.833 0.00 0.00 0.00 2.52
1551 1596 1.659022 TCCCCCACGATAAAACAGGA 58.341 50.000 0.00 0.00 0.00 3.86
1562 1607 1.068741 GCATCTACTACTTCCCCCACG 59.931 57.143 0.00 0.00 0.00 4.94
1565 1610 2.679082 TCTGCATCTACTACTTCCCCC 58.321 52.381 0.00 0.00 0.00 5.40
1566 1611 6.613153 AATATCTGCATCTACTACTTCCCC 57.387 41.667 0.00 0.00 0.00 4.81
1573 1618 9.381038 AGAACCCTAAAATATCTGCATCTACTA 57.619 33.333 0.00 0.00 0.00 1.82
1575 1620 9.646427 CTAGAACCCTAAAATATCTGCATCTAC 57.354 37.037 0.00 0.00 0.00 2.59
1576 1621 8.314751 GCTAGAACCCTAAAATATCTGCATCTA 58.685 37.037 0.00 0.00 0.00 1.98
1586 1631 9.969001 AGTACAATTTGCTAGAACCCTAAAATA 57.031 29.630 0.00 0.00 0.00 1.40
1588 1633 7.118680 CGAGTACAATTTGCTAGAACCCTAAAA 59.881 37.037 0.00 0.00 0.00 1.52
1590 1635 6.071221 TCGAGTACAATTTGCTAGAACCCTAA 60.071 38.462 0.00 0.00 0.00 2.69
1601 1646 5.041951 TGTTCCAATCGAGTACAATTTGC 57.958 39.130 0.00 0.00 0.00 3.68
1602 1647 8.427012 CAAAATGTTCCAATCGAGTACAATTTG 58.573 33.333 11.25 11.25 34.95 2.32
1604 1649 7.657336 ACAAAATGTTCCAATCGAGTACAATT 58.343 30.769 0.00 0.00 0.00 2.32
1605 1650 7.214467 ACAAAATGTTCCAATCGAGTACAAT 57.786 32.000 0.00 0.00 0.00 2.71
1606 1651 6.627395 ACAAAATGTTCCAATCGAGTACAA 57.373 33.333 0.00 0.00 0.00 2.41
1608 1653 6.581166 GGAAACAAAATGTTCCAATCGAGTAC 59.419 38.462 0.00 0.00 40.14 2.73
1628 1984 6.817140 ACGGTGAGAGTATTTAGAATGGAAAC 59.183 38.462 0.00 0.00 0.00 2.78
1629 1985 6.942976 ACGGTGAGAGTATTTAGAATGGAAA 58.057 36.000 0.00 0.00 0.00 3.13
1637 1993 5.821516 ACAGAGACGGTGAGAGTATTTAG 57.178 43.478 0.00 0.00 0.00 1.85
1644 2000 4.876679 TGTATCTAACAGAGACGGTGAGAG 59.123 45.833 0.00 0.00 39.19 3.20
1645 2001 4.840271 TGTATCTAACAGAGACGGTGAGA 58.160 43.478 0.00 0.00 39.19 3.27
1646 2002 5.278071 GGATGTATCTAACAGAGACGGTGAG 60.278 48.000 0.00 0.00 42.70 3.51
1647 2003 4.579340 GGATGTATCTAACAGAGACGGTGA 59.421 45.833 0.00 0.00 42.70 4.02
1648 2004 4.554919 CGGATGTATCTAACAGAGACGGTG 60.555 50.000 0.00 0.00 42.70 4.94
1649 2005 3.564644 CGGATGTATCTAACAGAGACGGT 59.435 47.826 0.00 0.00 42.70 4.83
1650 2006 3.564644 ACGGATGTATCTAACAGAGACGG 59.435 47.826 0.00 0.00 42.70 4.79
1651 2007 4.815040 ACGGATGTATCTAACAGAGACG 57.185 45.455 0.00 0.00 42.70 4.18
1693 2049 9.392259 CTTATACTCCCTCCGTCTTAAATTTTT 57.608 33.333 0.00 0.00 0.00 1.94
1694 2050 7.991460 CCTTATACTCCCTCCGTCTTAAATTTT 59.009 37.037 0.00 0.00 0.00 1.82
1695 2051 7.419865 CCCTTATACTCCCTCCGTCTTAAATTT 60.420 40.741 0.00 0.00 0.00 1.82
1696 2052 6.042897 CCCTTATACTCCCTCCGTCTTAAATT 59.957 42.308 0.00 0.00 0.00 1.82
1697 2053 5.543020 CCCTTATACTCCCTCCGTCTTAAAT 59.457 44.000 0.00 0.00 0.00 1.40
1698 2054 4.897670 CCCTTATACTCCCTCCGTCTTAAA 59.102 45.833 0.00 0.00 0.00 1.52
1699 2055 4.168675 TCCCTTATACTCCCTCCGTCTTAA 59.831 45.833 0.00 0.00 0.00 1.85
1700 2056 3.723681 TCCCTTATACTCCCTCCGTCTTA 59.276 47.826 0.00 0.00 0.00 2.10
1701 2057 2.517127 TCCCTTATACTCCCTCCGTCTT 59.483 50.000 0.00 0.00 0.00 3.01
1702 2058 2.141911 TCCCTTATACTCCCTCCGTCT 58.858 52.381 0.00 0.00 0.00 4.18
1703 2059 2.671896 TCCCTTATACTCCCTCCGTC 57.328 55.000 0.00 0.00 0.00 4.79
1704 2060 3.409804 TTTCCCTTATACTCCCTCCGT 57.590 47.619 0.00 0.00 0.00 4.69
1705 2061 3.494573 GCTTTTCCCTTATACTCCCTCCG 60.495 52.174 0.00 0.00 0.00 4.63
1706 2062 3.458487 TGCTTTTCCCTTATACTCCCTCC 59.542 47.826 0.00 0.00 0.00 4.30
1707 2063 4.772886 TGCTTTTCCCTTATACTCCCTC 57.227 45.455 0.00 0.00 0.00 4.30
1708 2064 4.202367 CGATGCTTTTCCCTTATACTCCCT 60.202 45.833 0.00 0.00 0.00 4.20
1709 2065 4.065789 CGATGCTTTTCCCTTATACTCCC 58.934 47.826 0.00 0.00 0.00 4.30
1710 2066 4.065789 CCGATGCTTTTCCCTTATACTCC 58.934 47.826 0.00 0.00 0.00 3.85
1711 2067 4.957296 TCCGATGCTTTTCCCTTATACTC 58.043 43.478 0.00 0.00 0.00 2.59
1712 2068 4.202367 CCTCCGATGCTTTTCCCTTATACT 60.202 45.833 0.00 0.00 0.00 2.12
1713 2069 4.065789 CCTCCGATGCTTTTCCCTTATAC 58.934 47.826 0.00 0.00 0.00 1.47
1714 2070 3.971305 TCCTCCGATGCTTTTCCCTTATA 59.029 43.478 0.00 0.00 0.00 0.98
1715 2071 2.777692 TCCTCCGATGCTTTTCCCTTAT 59.222 45.455 0.00 0.00 0.00 1.73
1716 2072 2.193127 TCCTCCGATGCTTTTCCCTTA 58.807 47.619 0.00 0.00 0.00 2.69
1717 2073 0.991920 TCCTCCGATGCTTTTCCCTT 59.008 50.000 0.00 0.00 0.00 3.95
1718 2074 0.991920 TTCCTCCGATGCTTTTCCCT 59.008 50.000 0.00 0.00 0.00 4.20
1719 2075 2.058593 ATTCCTCCGATGCTTTTCCC 57.941 50.000 0.00 0.00 0.00 3.97
1720 2076 3.016736 TCAATTCCTCCGATGCTTTTCC 58.983 45.455 0.00 0.00 0.00 3.13
1721 2077 4.261363 GGATCAATTCCTCCGATGCTTTTC 60.261 45.833 0.00 0.00 41.78 2.29
1726 2082 2.260844 TGGATCAATTCCTCCGATGC 57.739 50.000 0.00 0.00 45.68 3.91
1727 2083 5.068198 ACAATTTGGATCAATTCCTCCGATG 59.932 40.000 0.78 0.00 45.68 3.84
1731 2087 6.856149 AGCCACAATTTGGATCAATTCCTCC 61.856 44.000 9.90 0.00 41.65 4.30
1760 2116 3.477210 AATCCAAGGATAAGAGGCGTC 57.523 47.619 1.29 0.00 33.97 5.19
1810 2170 3.261643 TCAGTCAGTGTGCCATTATCACT 59.738 43.478 0.00 0.00 42.14 3.41
1821 2181 2.222678 GCAAGTGTCATCAGTCAGTGTG 59.777 50.000 0.00 0.00 0.00 3.82
1822 2182 2.103771 AGCAAGTGTCATCAGTCAGTGT 59.896 45.455 0.00 0.00 0.00 3.55
1845 2205 6.708054 AGTGAAGAACTGAACTATTTCACCAG 59.292 38.462 10.51 0.00 43.15 4.00
1864 2225 4.024048 ACGGCTGACATTTTTACAGTGAAG 60.024 41.667 0.00 0.00 34.60 3.02
1886 2247 5.159209 CAAGCAGGATCAATCAGAACAAAC 58.841 41.667 0.00 0.00 0.00 2.93
1893 2254 4.386867 AAATGCAAGCAGGATCAATCAG 57.613 40.909 0.00 0.00 0.00 2.90
1896 2257 5.416271 AGAAAAATGCAAGCAGGATCAAT 57.584 34.783 0.00 0.00 0.00 2.57
1955 2316 3.081061 AGATCAACAACAGCGCCATAAA 58.919 40.909 2.29 0.00 0.00 1.40
1956 2317 2.419673 CAGATCAACAACAGCGCCATAA 59.580 45.455 2.29 0.00 0.00 1.90
1957 2318 2.009051 CAGATCAACAACAGCGCCATA 58.991 47.619 2.29 0.00 0.00 2.74
1958 2319 0.806868 CAGATCAACAACAGCGCCAT 59.193 50.000 2.29 0.00 0.00 4.40
1959 2320 1.236616 CCAGATCAACAACAGCGCCA 61.237 55.000 2.29 0.00 0.00 5.69
1960 2321 0.955428 TCCAGATCAACAACAGCGCC 60.955 55.000 2.29 0.00 0.00 6.53
1961 2322 1.089920 ATCCAGATCAACAACAGCGC 58.910 50.000 0.00 0.00 0.00 5.92
1962 2323 4.183865 TCTAATCCAGATCAACAACAGCG 58.816 43.478 0.00 0.00 0.00 5.18
1963 2324 5.423015 TCTCTAATCCAGATCAACAACAGC 58.577 41.667 0.00 0.00 31.13 4.40
1964 2325 7.326454 TCTTCTCTAATCCAGATCAACAACAG 58.674 38.462 0.00 0.00 31.13 3.16
1965 2326 7.244886 TCTTCTCTAATCCAGATCAACAACA 57.755 36.000 0.00 0.00 31.13 3.33
1966 2327 9.995003 ATATCTTCTCTAATCCAGATCAACAAC 57.005 33.333 0.00 0.00 31.13 3.32
1967 2328 9.993454 CATATCTTCTCTAATCCAGATCAACAA 57.007 33.333 0.00 0.00 31.13 2.83
1968 2329 8.591940 CCATATCTTCTCTAATCCAGATCAACA 58.408 37.037 0.00 0.00 31.13 3.33
1981 2342 7.389884 GCATCTTTCAATGCCATATCTTCTCTA 59.610 37.037 0.00 0.00 45.07 2.43
1982 2343 6.207025 GCATCTTTCAATGCCATATCTTCTCT 59.793 38.462 0.00 0.00 45.07 3.10
2044 2445 2.223971 TGTGAACTTGGAGGACGAGAAC 60.224 50.000 0.00 0.00 34.46 3.01
2047 2448 2.029020 TGATGTGAACTTGGAGGACGAG 60.029 50.000 0.00 0.00 36.60 4.18
2094 2495 3.070018 CAACTGTGTGGATCAAGACTCC 58.930 50.000 0.00 0.00 0.00 3.85
2115 2516 2.223735 TGCGAGATACTGACGGGAAATC 60.224 50.000 0.00 0.00 0.00 2.17
2125 2526 2.159043 ACACAAGGGATGCGAGATACTG 60.159 50.000 0.00 0.00 0.00 2.74
2136 2537 5.308237 GGATCCTCTAACATACACAAGGGAT 59.692 44.000 3.84 0.00 34.29 3.85
2140 2541 7.227512 GGAAATGGATCCTCTAACATACACAAG 59.772 40.741 14.23 0.00 36.50 3.16
2141 2542 7.054124 GGAAATGGATCCTCTAACATACACAA 58.946 38.462 14.23 0.00 36.50 3.33
2142 2543 6.591935 GGAAATGGATCCTCTAACATACACA 58.408 40.000 14.23 0.00 36.50 3.72
2143 2544 5.696724 CGGAAATGGATCCTCTAACATACAC 59.303 44.000 14.23 0.00 37.34 2.90
2144 2545 5.365605 ACGGAAATGGATCCTCTAACATACA 59.634 40.000 14.23 0.00 37.34 2.29
2147 2548 4.408921 TGACGGAAATGGATCCTCTAACAT 59.591 41.667 14.23 0.00 37.34 2.71
2149 2550 4.402056 TGACGGAAATGGATCCTCTAAC 57.598 45.455 14.23 0.00 37.34 2.34
2150 2551 4.714802 TCTTGACGGAAATGGATCCTCTAA 59.285 41.667 14.23 0.00 37.34 2.10
2152 2553 3.107601 TCTTGACGGAAATGGATCCTCT 58.892 45.455 14.23 0.00 37.34 3.69
2154 2555 2.171448 CCTCTTGACGGAAATGGATCCT 59.829 50.000 14.23 0.00 37.34 3.24
2155 2556 2.170607 TCCTCTTGACGGAAATGGATCC 59.829 50.000 4.20 4.20 36.05 3.36
2156 2557 3.198872 GTCCTCTTGACGGAAATGGATC 58.801 50.000 0.00 0.00 33.49 3.36
2157 2558 3.268023 GTCCTCTTGACGGAAATGGAT 57.732 47.619 0.00 0.00 33.49 3.41
2158 2559 2.762535 GTCCTCTTGACGGAAATGGA 57.237 50.000 0.00 0.00 33.49 3.41
2167 2568 2.450609 TTACTTGGCGTCCTCTTGAC 57.549 50.000 0.00 0.00 40.81 3.18
2169 2570 2.076863 CCTTTACTTGGCGTCCTCTTG 58.923 52.381 0.00 0.00 0.00 3.02
2170 2571 1.003233 CCCTTTACTTGGCGTCCTCTT 59.997 52.381 0.00 0.00 0.00 2.85
2178 4330 1.354705 AGAGGAACCCCTTTACTTGGC 59.645 52.381 0.00 0.00 44.53 4.52
2180 4332 5.959583 ATAGAGAGGAACCCCTTTACTTG 57.040 43.478 0.00 0.00 44.53 3.16
2183 4335 6.959904 AGAAAATAGAGAGGAACCCCTTTAC 58.040 40.000 0.00 0.00 44.53 2.01
2191 4343 5.050023 GCGCCAATAGAAAATAGAGAGGAAC 60.050 44.000 0.00 0.00 0.00 3.62
2193 4345 4.503296 GGCGCCAATAGAAAATAGAGAGGA 60.503 45.833 24.80 0.00 0.00 3.71
2195 4347 3.430218 CGGCGCCAATAGAAAATAGAGAG 59.570 47.826 28.98 0.00 0.00 3.20
2200 4352 2.623878 TCCGGCGCCAATAGAAAATA 57.376 45.000 28.98 0.00 0.00 1.40
2201 4353 1.981256 ATCCGGCGCCAATAGAAAAT 58.019 45.000 28.98 4.17 0.00 1.82
2227 4379 5.107453 CGTTAGAAGAAAGCGAGTGACAATT 60.107 40.000 0.00 0.00 0.00 2.32
2233 4385 2.408704 CACCGTTAGAAGAAAGCGAGTG 59.591 50.000 0.00 0.00 0.00 3.51
2248 4400 1.004918 GTGAGTAGCAGGCACCGTT 60.005 57.895 0.00 0.00 0.00 4.44
2262 4414 7.285783 TCCGTCTCATAATTTAAAACGTGAG 57.714 36.000 15.46 15.46 35.58 3.51
2263 4415 6.311935 CCTCCGTCTCATAATTTAAAACGTGA 59.688 38.462 0.00 0.00 0.00 4.35
2264 4416 6.456449 CCCTCCGTCTCATAATTTAAAACGTG 60.456 42.308 0.00 0.00 0.00 4.49
2265 4417 5.583457 CCCTCCGTCTCATAATTTAAAACGT 59.417 40.000 0.00 0.00 0.00 3.99
2266 4418 5.813672 TCCCTCCGTCTCATAATTTAAAACG 59.186 40.000 0.00 0.00 0.00 3.60
2267 4419 6.822170 ACTCCCTCCGTCTCATAATTTAAAAC 59.178 38.462 0.00 0.00 0.00 2.43
2268 4420 6.954232 ACTCCCTCCGTCTCATAATTTAAAA 58.046 36.000 0.00 0.00 0.00 1.52
2269 4421 6.555463 ACTCCCTCCGTCTCATAATTTAAA 57.445 37.500 0.00 0.00 0.00 1.52
2270 4422 6.239232 GCTACTCCCTCCGTCTCATAATTTAA 60.239 42.308 0.00 0.00 0.00 1.52
2271 4423 5.243283 GCTACTCCCTCCGTCTCATAATTTA 59.757 44.000 0.00 0.00 0.00 1.40
2272 4424 4.039366 GCTACTCCCTCCGTCTCATAATTT 59.961 45.833 0.00 0.00 0.00 1.82
2273 4425 3.574826 GCTACTCCCTCCGTCTCATAATT 59.425 47.826 0.00 0.00 0.00 1.40
2274 4426 3.158676 GCTACTCCCTCCGTCTCATAAT 58.841 50.000 0.00 0.00 0.00 1.28
2275 4427 2.175069 AGCTACTCCCTCCGTCTCATAA 59.825 50.000 0.00 0.00 0.00 1.90
2276 4428 1.775459 AGCTACTCCCTCCGTCTCATA 59.225 52.381 0.00 0.00 0.00 2.15
2277 4429 0.553819 AGCTACTCCCTCCGTCTCAT 59.446 55.000 0.00 0.00 0.00 2.90
2278 4430 0.331954 AAGCTACTCCCTCCGTCTCA 59.668 55.000 0.00 0.00 0.00 3.27
2279 4431 0.741915 CAAGCTACTCCCTCCGTCTC 59.258 60.000 0.00 0.00 0.00 3.36
2280 4432 0.039911 ACAAGCTACTCCCTCCGTCT 59.960 55.000 0.00 0.00 0.00 4.18
2281 4433 0.896226 AACAAGCTACTCCCTCCGTC 59.104 55.000 0.00 0.00 0.00 4.79
2282 4434 1.275573 GAAACAAGCTACTCCCTCCGT 59.724 52.381 0.00 0.00 0.00 4.69
2283 4435 1.275291 TGAAACAAGCTACTCCCTCCG 59.725 52.381 0.00 0.00 0.00 4.63
2284 4436 3.636153 ATGAAACAAGCTACTCCCTCC 57.364 47.619 0.00 0.00 0.00 4.30
2285 4437 4.393371 GTGAATGAAACAAGCTACTCCCTC 59.607 45.833 0.00 0.00 0.00 4.30
2286 4438 4.327680 GTGAATGAAACAAGCTACTCCCT 58.672 43.478 0.00 0.00 0.00 4.20
2287 4439 3.125316 CGTGAATGAAACAAGCTACTCCC 59.875 47.826 0.00 0.00 0.00 4.30
2288 4440 3.125316 CCGTGAATGAAACAAGCTACTCC 59.875 47.826 0.00 0.00 0.00 3.85
2289 4441 3.994392 TCCGTGAATGAAACAAGCTACTC 59.006 43.478 0.00 0.00 0.00 2.59
2290 4442 4.002906 TCCGTGAATGAAACAAGCTACT 57.997 40.909 0.00 0.00 0.00 2.57
2291 4443 4.946784 ATCCGTGAATGAAACAAGCTAC 57.053 40.909 0.00 0.00 0.00 3.58
2292 4444 4.394920 GGAATCCGTGAATGAAACAAGCTA 59.605 41.667 0.00 0.00 0.00 3.32
2293 4445 3.191371 GGAATCCGTGAATGAAACAAGCT 59.809 43.478 0.00 0.00 0.00 3.74
2307 4459 0.323542 AGGAGACGTGAGGAATCCGT 60.324 55.000 0.00 0.00 36.55 4.69
2308 4460 0.101399 CAGGAGACGTGAGGAATCCG 59.899 60.000 0.00 0.00 36.55 4.18
2363 4521 9.110502 AGAAAGGGAAATATAAGAGCGTTTAAG 57.889 33.333 0.00 0.00 0.00 1.85
2366 4524 7.939784 AAGAAAGGGAAATATAAGAGCGTTT 57.060 32.000 0.00 0.00 0.00 3.60
2397 4559 9.444600 TCAAACAAGAACTAAAGTTGTACTTCT 57.555 29.630 0.00 0.00 37.47 2.85
2440 4602 7.359181 GGCCGAGTTCAAAATGATTAAACAAAG 60.359 37.037 0.00 0.00 0.00 2.77
2446 4608 3.754323 ACGGCCGAGTTCAAAATGATTAA 59.246 39.130 35.90 0.00 0.00 1.40
2459 4621 3.444805 GAGAGCAGACGGCCGAGT 61.445 66.667 35.90 16.02 46.50 4.18
2461 4623 4.742649 AGGAGAGCAGACGGCCGA 62.743 66.667 35.90 0.00 46.50 5.54
2492 4654 1.611491 GAAAACATGGGGCGAAGAACA 59.389 47.619 0.00 0.00 0.00 3.18
2501 4663 4.872293 AGCAGGGAAAACATGGGG 57.128 55.556 0.00 0.00 0.00 4.96


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.