Multiple sequence alignment - TraesCS7A01G503700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G503700 chr7A 100.000 3064 0 0 1 3064 692319040 692315977 0.000000e+00 5659.0
1 TraesCS7A01G503700 chr1D 90.732 2622 139 41 363 2918 5447601 5450184 0.000000e+00 3400.0
2 TraesCS7A01G503700 chr1D 93.716 366 9 3 1 365 5447193 5447545 1.250000e-148 536.0
3 TraesCS7A01G503700 chr1D 89.503 362 33 5 667 1024 5446519 5446879 1.300000e-123 453.0
4 TraesCS7A01G503700 chr1B 85.547 1965 173 59 652 2556 17885740 17883827 0.000000e+00 1953.0
5 TraesCS7A01G503700 chr1B 86.043 1870 165 47 735 2556 639427437 639429258 0.000000e+00 1919.0
6 TraesCS7A01G503700 chr1B 88.668 1456 92 38 1512 2929 627841195 627842615 0.000000e+00 1707.0
7 TraesCS7A01G503700 chr1B 86.241 814 78 14 735 1520 627828160 627828967 0.000000e+00 852.0
8 TraesCS7A01G503700 chr1B 90.535 486 44 2 579 1062 639426492 639426977 2.580000e-180 641.0
9 TraesCS7A01G503700 chr1B 89.613 491 41 6 579 1062 627827217 627827704 1.560000e-172 616.0
10 TraesCS7A01G503700 chr1B 93.103 116 4 1 2946 3061 627842676 627842787 1.890000e-37 167.0
11 TraesCS7A01G503700 chr1B 92.000 50 4 0 224 273 639426422 639426471 1.520000e-08 71.3
12 TraesCS7A01G503700 chr1B 95.238 42 2 0 2948 2989 8177284 8177325 1.970000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G503700 chr7A 692315977 692319040 3063 True 5659.0 5659 100.0000 1 3064 1 chr7A.!!$R1 3063
1 TraesCS7A01G503700 chr1D 5446519 5450184 3665 False 1463.0 3400 91.3170 1 2918 3 chr1D.!!$F1 2917
2 TraesCS7A01G503700 chr1B 17883827 17885740 1913 True 1953.0 1953 85.5470 652 2556 1 chr1B.!!$R1 1904
3 TraesCS7A01G503700 chr1B 627841195 627842787 1592 False 937.0 1707 90.8855 1512 3061 2 chr1B.!!$F3 1549
4 TraesCS7A01G503700 chr1B 639426422 639429258 2836 False 877.1 1919 89.5260 224 2556 3 chr1B.!!$F4 2332
5 TraesCS7A01G503700 chr1B 627827217 627828967 1750 False 734.0 852 87.9270 579 1520 2 chr1B.!!$F2 941

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
543 544 0.033601 AGGCCCAATTCCGCATGTAA 60.034 50.000 0.0 0.0 0.0 2.41 F
544 545 0.820871 GGCCCAATTCCGCATGTAAA 59.179 50.000 0.0 0.0 0.0 2.01 F
1433 2949 1.141657 AGCATGGTGGTGAATAGCGAT 59.858 47.619 0.0 0.0 0.0 4.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1469 2985 0.251922 AATCAGCATTGTGGGCAGGT 60.252 50.0 0.00 0.0 0.0 4.00 R
1655 3180 0.701147 TGTGCACCCATGTTCCCATA 59.299 50.0 15.69 0.0 0.0 2.74 R
2340 3886 0.840288 TGTTCCCTCCCAGCTTGCTA 60.840 55.0 0.00 0.0 0.0 3.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.403252 CCGTCTAGCACCCTGAAATT 57.597 50.000 0.00 0.00 0.00 1.82
20 21 2.009774 CCGTCTAGCACCCTGAAATTG 58.990 52.381 0.00 0.00 0.00 2.32
21 22 1.398390 CGTCTAGCACCCTGAAATTGC 59.602 52.381 0.00 0.00 36.45 3.56
23 24 2.680339 GTCTAGCACCCTGAAATTGCTC 59.320 50.000 0.00 0.00 43.14 4.26
24 25 2.305635 TCTAGCACCCTGAAATTGCTCA 59.694 45.455 0.00 0.00 43.14 4.26
25 26 1.251251 AGCACCCTGAAATTGCTCAC 58.749 50.000 0.00 0.00 43.14 3.51
26 27 0.961019 GCACCCTGAAATTGCTCACA 59.039 50.000 0.00 0.00 33.26 3.58
27 28 1.340889 GCACCCTGAAATTGCTCACAA 59.659 47.619 0.00 0.00 40.87 3.33
28 29 2.608752 GCACCCTGAAATTGCTCACAAG 60.609 50.000 0.00 0.00 39.69 3.16
29 30 2.886523 CACCCTGAAATTGCTCACAAGA 59.113 45.455 0.00 0.00 39.69 3.02
30 31 3.318839 CACCCTGAAATTGCTCACAAGAA 59.681 43.478 0.00 0.00 39.69 2.52
31 32 3.319122 ACCCTGAAATTGCTCACAAGAAC 59.681 43.478 0.00 0.00 39.69 3.01
32 33 3.571401 CCCTGAAATTGCTCACAAGAACT 59.429 43.478 0.00 0.00 39.69 3.01
33 34 4.038402 CCCTGAAATTGCTCACAAGAACTT 59.962 41.667 0.00 0.00 39.69 2.66
34 35 5.241506 CCCTGAAATTGCTCACAAGAACTTA 59.758 40.000 0.00 0.00 39.69 2.24
35 36 6.071728 CCCTGAAATTGCTCACAAGAACTTAT 60.072 38.462 0.00 0.00 39.69 1.73
36 37 6.805271 CCTGAAATTGCTCACAAGAACTTATG 59.195 38.462 0.00 0.00 39.69 1.90
37 38 6.151691 TGAAATTGCTCACAAGAACTTATGC 58.848 36.000 0.00 0.00 39.69 3.14
38 39 5.710513 AATTGCTCACAAGAACTTATGCA 57.289 34.783 0.00 0.00 39.69 3.96
39 40 4.754372 TTGCTCACAAGAACTTATGCAG 57.246 40.909 0.00 0.00 0.00 4.41
40 41 4.006780 TGCTCACAAGAACTTATGCAGA 57.993 40.909 0.00 0.00 0.00 4.26
41 42 3.748048 TGCTCACAAGAACTTATGCAGAC 59.252 43.478 0.00 0.00 0.00 3.51
42 43 3.126000 GCTCACAAGAACTTATGCAGACC 59.874 47.826 0.00 0.00 0.00 3.85
43 44 4.573900 CTCACAAGAACTTATGCAGACCT 58.426 43.478 0.00 0.00 0.00 3.85
44 45 4.973168 TCACAAGAACTTATGCAGACCTT 58.027 39.130 0.00 0.00 0.00 3.50
45 46 4.756642 TCACAAGAACTTATGCAGACCTTG 59.243 41.667 0.00 0.00 39.35 3.61
46 47 4.756642 CACAAGAACTTATGCAGACCTTGA 59.243 41.667 14.71 0.00 38.10 3.02
47 48 4.999950 ACAAGAACTTATGCAGACCTTGAG 59.000 41.667 14.71 0.00 38.10 3.02
48 49 5.221722 ACAAGAACTTATGCAGACCTTGAGA 60.222 40.000 14.71 0.00 38.10 3.27
49 50 5.083533 AGAACTTATGCAGACCTTGAGAG 57.916 43.478 0.00 0.00 0.00 3.20
59 60 3.877951 CCTTGAGAGGCAGCTGATT 57.122 52.632 20.43 3.56 35.94 2.57
60 61 1.380524 CCTTGAGAGGCAGCTGATTG 58.619 55.000 20.43 0.00 35.94 2.67
61 62 1.339824 CCTTGAGAGGCAGCTGATTGT 60.340 52.381 20.43 2.04 35.94 2.71
62 63 2.434428 CTTGAGAGGCAGCTGATTGTT 58.566 47.619 20.43 0.00 0.00 2.83
63 64 2.105006 TGAGAGGCAGCTGATTGTTC 57.895 50.000 20.43 8.22 0.00 3.18
64 65 1.005340 GAGAGGCAGCTGATTGTTCG 58.995 55.000 20.43 0.00 0.00 3.95
65 66 0.392193 AGAGGCAGCTGATTGTTCGG 60.392 55.000 20.43 0.00 0.00 4.30
66 67 1.372087 GAGGCAGCTGATTGTTCGGG 61.372 60.000 20.43 0.00 0.00 5.14
67 68 1.675641 GGCAGCTGATTGTTCGGGT 60.676 57.895 20.43 0.00 39.55 5.28
68 69 1.244019 GGCAGCTGATTGTTCGGGTT 61.244 55.000 20.43 0.00 36.84 4.11
69 70 0.169009 GCAGCTGATTGTTCGGGTTC 59.831 55.000 20.43 0.00 36.84 3.62
70 71 0.443869 CAGCTGATTGTTCGGGTTCG 59.556 55.000 8.42 0.00 36.84 3.95
71 72 0.320374 AGCTGATTGTTCGGGTTCGA 59.680 50.000 0.00 0.00 44.44 3.71
72 73 1.066143 AGCTGATTGTTCGGGTTCGAT 60.066 47.619 0.00 0.00 45.51 3.59
73 74 2.167693 AGCTGATTGTTCGGGTTCGATA 59.832 45.455 0.00 0.00 45.51 2.92
74 75 2.284417 GCTGATTGTTCGGGTTCGATAC 59.716 50.000 0.00 0.00 45.51 2.24
75 76 2.864343 CTGATTGTTCGGGTTCGATACC 59.136 50.000 7.90 7.90 45.51 2.73
90 91 5.840243 TCGATACCCGAATTCTTGTTAGA 57.160 39.130 3.52 0.00 45.43 2.10
91 92 5.828747 TCGATACCCGAATTCTTGTTAGAG 58.171 41.667 3.52 0.00 45.43 2.43
92 93 5.359009 TCGATACCCGAATTCTTGTTAGAGT 59.641 40.000 3.52 0.00 45.43 3.24
93 94 5.459107 CGATACCCGAATTCTTGTTAGAGTG 59.541 44.000 3.52 0.00 41.76 3.51
94 95 4.618920 ACCCGAATTCTTGTTAGAGTGT 57.381 40.909 3.52 0.00 0.00 3.55
95 96 4.969484 ACCCGAATTCTTGTTAGAGTGTT 58.031 39.130 3.52 0.00 0.00 3.32
96 97 5.374071 ACCCGAATTCTTGTTAGAGTGTTT 58.626 37.500 3.52 0.00 0.00 2.83
97 98 5.826208 ACCCGAATTCTTGTTAGAGTGTTTT 59.174 36.000 3.52 0.00 0.00 2.43
98 99 6.320418 ACCCGAATTCTTGTTAGAGTGTTTTT 59.680 34.615 3.52 0.00 0.00 1.94
120 121 7.994425 TTTTGTATAGCTGAAAACCATCTCA 57.006 32.000 0.00 0.00 0.00 3.27
121 122 7.615582 TTTGTATAGCTGAAAACCATCTCAG 57.384 36.000 0.00 0.00 41.71 3.35
122 123 6.299805 TGTATAGCTGAAAACCATCTCAGT 57.700 37.500 0.00 0.00 41.02 3.41
123 124 7.418337 TGTATAGCTGAAAACCATCTCAGTA 57.582 36.000 0.00 0.00 41.02 2.74
124 125 7.492524 TGTATAGCTGAAAACCATCTCAGTAG 58.507 38.462 0.00 0.00 41.02 2.57
125 126 4.213564 AGCTGAAAACCATCTCAGTAGG 57.786 45.455 0.00 0.00 41.02 3.18
126 127 3.584848 AGCTGAAAACCATCTCAGTAGGT 59.415 43.478 0.00 0.00 41.02 3.08
128 129 4.393371 GCTGAAAACCATCTCAGTAGGTTC 59.607 45.833 4.36 0.00 44.44 3.62
129 130 5.799213 CTGAAAACCATCTCAGTAGGTTCT 58.201 41.667 4.36 0.00 44.44 3.01
130 131 5.551233 TGAAAACCATCTCAGTAGGTTCTG 58.449 41.667 4.36 0.00 44.44 3.02
131 132 5.071788 TGAAAACCATCTCAGTAGGTTCTGT 59.928 40.000 4.36 0.00 44.44 3.41
132 133 6.269077 TGAAAACCATCTCAGTAGGTTCTGTA 59.731 38.462 4.36 0.00 44.44 2.74
133 134 6.681729 AAACCATCTCAGTAGGTTCTGTAA 57.318 37.500 4.36 0.00 44.44 2.41
134 135 6.875972 AACCATCTCAGTAGGTTCTGTAAT 57.124 37.500 0.00 0.00 41.60 1.89
135 136 6.227298 ACCATCTCAGTAGGTTCTGTAATG 57.773 41.667 0.00 0.00 36.85 1.90
136 137 5.129485 ACCATCTCAGTAGGTTCTGTAATGG 59.871 44.000 18.47 18.47 44.23 3.16
137 138 5.129485 CCATCTCAGTAGGTTCTGTAATGGT 59.871 44.000 15.05 0.00 39.98 3.55
138 139 5.661056 TCTCAGTAGGTTCTGTAATGGTG 57.339 43.478 0.00 0.00 36.85 4.17
139 140 5.084519 TCTCAGTAGGTTCTGTAATGGTGT 58.915 41.667 0.00 0.00 36.85 4.16
140 141 6.250711 TCTCAGTAGGTTCTGTAATGGTGTA 58.749 40.000 0.00 0.00 36.85 2.90
141 142 6.152323 TCTCAGTAGGTTCTGTAATGGTGTAC 59.848 42.308 0.00 0.00 36.85 2.90
142 143 5.776208 TCAGTAGGTTCTGTAATGGTGTACA 59.224 40.000 0.00 0.00 36.85 2.90
143 144 6.268158 TCAGTAGGTTCTGTAATGGTGTACAA 59.732 38.462 0.00 0.00 33.66 2.41
144 145 6.932400 CAGTAGGTTCTGTAATGGTGTACAAA 59.068 38.462 0.00 0.00 33.66 2.83
145 146 6.932960 AGTAGGTTCTGTAATGGTGTACAAAC 59.067 38.462 0.00 0.00 33.66 2.93
146 147 5.686753 AGGTTCTGTAATGGTGTACAAACA 58.313 37.500 0.00 0.00 33.66 2.83
147 148 6.123651 AGGTTCTGTAATGGTGTACAAACAA 58.876 36.000 0.00 0.00 37.36 2.83
148 149 6.775629 AGGTTCTGTAATGGTGTACAAACAAT 59.224 34.615 0.00 0.00 37.36 2.71
149 150 7.940137 AGGTTCTGTAATGGTGTACAAACAATA 59.060 33.333 0.00 0.00 37.36 1.90
150 151 8.736244 GGTTCTGTAATGGTGTACAAACAATAT 58.264 33.333 0.00 0.00 37.36 1.28
154 155 9.906660 CTGTAATGGTGTACAAACAATATTTGT 57.093 29.630 9.73 9.73 44.03 2.83
165 166 4.701956 ACAATATTTGTTTCAGCCGGAG 57.298 40.909 5.05 0.00 42.22 4.63
166 167 4.331968 ACAATATTTGTTTCAGCCGGAGA 58.668 39.130 5.05 0.00 42.22 3.71
167 168 4.396166 ACAATATTTGTTTCAGCCGGAGAG 59.604 41.667 5.05 0.00 42.22 3.20
168 169 1.826385 ATTTGTTTCAGCCGGAGAGG 58.174 50.000 5.05 0.00 44.97 3.69
177 178 3.622514 CCGGAGAGGCTACTTGCT 58.377 61.111 0.00 0.00 42.39 3.91
178 179 2.808598 CCGGAGAGGCTACTTGCTA 58.191 57.895 0.00 0.00 42.39 3.49
179 180 0.671251 CCGGAGAGGCTACTTGCTAG 59.329 60.000 0.00 0.00 42.39 3.42
180 181 1.394618 CGGAGAGGCTACTTGCTAGT 58.605 55.000 6.00 6.00 42.39 2.57
181 182 2.573369 CGGAGAGGCTACTTGCTAGTA 58.427 52.381 7.79 7.79 42.39 1.82
182 183 2.950309 CGGAGAGGCTACTTGCTAGTAA 59.050 50.000 9.31 0.00 42.39 2.24
183 184 3.380637 CGGAGAGGCTACTTGCTAGTAAA 59.619 47.826 9.31 0.00 42.39 2.01
184 185 4.038162 CGGAGAGGCTACTTGCTAGTAAAT 59.962 45.833 9.31 0.00 42.39 1.40
185 186 5.452077 CGGAGAGGCTACTTGCTAGTAAATT 60.452 44.000 9.31 0.00 42.39 1.82
186 187 6.350103 GGAGAGGCTACTTGCTAGTAAATTT 58.650 40.000 9.31 0.00 42.39 1.82
187 188 6.258947 GGAGAGGCTACTTGCTAGTAAATTTG 59.741 42.308 9.31 0.00 42.39 2.32
188 189 6.712276 AGAGGCTACTTGCTAGTAAATTTGT 58.288 36.000 9.31 0.00 42.39 2.83
189 190 7.848128 AGAGGCTACTTGCTAGTAAATTTGTA 58.152 34.615 9.31 0.00 42.39 2.41
190 191 8.487028 AGAGGCTACTTGCTAGTAAATTTGTAT 58.513 33.333 9.31 0.00 42.39 2.29
191 192 9.110502 GAGGCTACTTGCTAGTAAATTTGTATT 57.889 33.333 9.31 0.00 42.39 1.89
192 193 9.462606 AGGCTACTTGCTAGTAAATTTGTATTT 57.537 29.630 9.31 0.00 42.39 1.40
215 216 8.651391 TTTTATATCTGAATTGCTGCAAATGG 57.349 30.769 20.06 9.91 0.00 3.16
216 217 3.536956 ATCTGAATTGCTGCAAATGGG 57.463 42.857 20.06 10.25 0.00 4.00
217 218 2.250031 TCTGAATTGCTGCAAATGGGT 58.750 42.857 20.06 0.00 0.00 4.51
218 219 2.028839 TCTGAATTGCTGCAAATGGGTG 60.029 45.455 20.06 7.94 0.00 4.61
219 220 1.693062 TGAATTGCTGCAAATGGGTGT 59.307 42.857 20.06 0.00 0.00 4.16
220 221 2.070783 GAATTGCTGCAAATGGGTGTG 58.929 47.619 20.06 0.00 0.00 3.82
221 222 1.340088 ATTGCTGCAAATGGGTGTGA 58.660 45.000 20.06 0.00 0.00 3.58
222 223 1.117994 TTGCTGCAAATGGGTGTGAA 58.882 45.000 13.51 0.00 0.00 3.18
223 224 1.117994 TGCTGCAAATGGGTGTGAAA 58.882 45.000 0.00 0.00 0.00 2.69
224 225 1.693062 TGCTGCAAATGGGTGTGAAAT 59.307 42.857 0.00 0.00 0.00 2.17
225 226 2.104451 TGCTGCAAATGGGTGTGAAATT 59.896 40.909 0.00 0.00 0.00 1.82
226 227 2.481185 GCTGCAAATGGGTGTGAAATTG 59.519 45.455 0.00 0.00 0.00 2.32
227 228 3.731089 CTGCAAATGGGTGTGAAATTGT 58.269 40.909 0.00 0.00 0.00 2.71
228 229 4.798924 GCTGCAAATGGGTGTGAAATTGTA 60.799 41.667 0.00 0.00 0.00 2.41
229 230 4.626042 TGCAAATGGGTGTGAAATTGTAC 58.374 39.130 0.00 0.00 0.00 2.90
237 238 2.546368 GTGTGAAATTGTACAGACGCCA 59.454 45.455 0.00 0.00 0.00 5.69
241 242 0.690762 AATTGTACAGACGCCAGGGT 59.309 50.000 0.00 0.00 0.00 4.34
243 244 1.340088 TTGTACAGACGCCAGGGTAA 58.660 50.000 0.00 0.00 0.00 2.85
273 274 5.316167 TGGAGAAAGATACAAACACTGCAT 58.684 37.500 0.00 0.00 0.00 3.96
274 275 5.181811 TGGAGAAAGATACAAACACTGCATG 59.818 40.000 0.00 0.00 0.00 4.06
275 276 5.051891 AGAAAGATACAAACACTGCATGC 57.948 39.130 11.82 11.82 0.00 4.06
277 278 5.242393 AGAAAGATACAAACACTGCATGCTT 59.758 36.000 20.33 1.02 0.00 3.91
280 281 6.573664 AGATACAAACACTGCATGCTTTAA 57.426 33.333 20.33 3.40 0.00 1.52
281 282 7.161773 AGATACAAACACTGCATGCTTTAAT 57.838 32.000 20.33 7.84 0.00 1.40
284 285 5.464168 ACAAACACTGCATGCTTTAATCTC 58.536 37.500 20.33 0.00 0.00 2.75
285 286 5.242393 ACAAACACTGCATGCTTTAATCTCT 59.758 36.000 20.33 0.00 0.00 3.10
287 288 7.121759 ACAAACACTGCATGCTTTAATCTCTAT 59.878 33.333 20.33 0.00 0.00 1.98
288 289 8.615211 CAAACACTGCATGCTTTAATCTCTATA 58.385 33.333 20.33 0.00 0.00 1.31
289 290 8.915057 AACACTGCATGCTTTAATCTCTATAT 57.085 30.769 20.33 0.00 0.00 0.86
290 291 8.915057 ACACTGCATGCTTTAATCTCTATATT 57.085 30.769 20.33 0.00 0.00 1.28
291 292 9.347240 ACACTGCATGCTTTAATCTCTATATTT 57.653 29.630 20.33 0.00 0.00 1.40
292 293 9.823098 CACTGCATGCTTTAATCTCTATATTTC 57.177 33.333 20.33 0.00 0.00 2.17
293 294 9.007901 ACTGCATGCTTTAATCTCTATATTTCC 57.992 33.333 20.33 0.00 0.00 3.13
294 295 8.922931 TGCATGCTTTAATCTCTATATTTCCA 57.077 30.769 20.33 0.00 0.00 3.53
295 296 9.353431 TGCATGCTTTAATCTCTATATTTCCAA 57.647 29.630 20.33 0.00 0.00 3.53
303 304 9.847224 TTAATCTCTATATTTCCAAACTGTCCC 57.153 33.333 0.00 0.00 0.00 4.46
304 305 7.698163 ATCTCTATATTTCCAAACTGTCCCT 57.302 36.000 0.00 0.00 0.00 4.20
305 306 6.889198 TCTCTATATTTCCAAACTGTCCCTG 58.111 40.000 0.00 0.00 0.00 4.45
306 307 6.443849 TCTCTATATTTCCAAACTGTCCCTGT 59.556 38.462 0.00 0.00 0.00 4.00
307 308 7.622081 TCTCTATATTTCCAAACTGTCCCTGTA 59.378 37.037 0.00 0.00 0.00 2.74
308 309 8.153221 TCTATATTTCCAAACTGTCCCTGTAA 57.847 34.615 0.00 0.00 0.00 2.41
309 310 8.778059 TCTATATTTCCAAACTGTCCCTGTAAT 58.222 33.333 0.00 0.00 0.00 1.89
310 311 5.982890 ATTTCCAAACTGTCCCTGTAATG 57.017 39.130 0.00 0.00 0.00 1.90
311 312 2.790433 TCCAAACTGTCCCTGTAATGC 58.210 47.619 0.00 0.00 0.00 3.56
312 313 1.818674 CCAAACTGTCCCTGTAATGCC 59.181 52.381 0.00 0.00 0.00 4.40
313 314 1.818674 CAAACTGTCCCTGTAATGCCC 59.181 52.381 0.00 0.00 0.00 5.36
314 315 1.072266 AACTGTCCCTGTAATGCCCA 58.928 50.000 0.00 0.00 0.00 5.36
315 316 0.620556 ACTGTCCCTGTAATGCCCAG 59.379 55.000 0.00 0.00 0.00 4.45
316 317 0.620556 CTGTCCCTGTAATGCCCAGT 59.379 55.000 0.00 0.00 0.00 4.00
317 318 1.004745 CTGTCCCTGTAATGCCCAGTT 59.995 52.381 0.00 0.00 0.00 3.16
318 319 1.004277 TGTCCCTGTAATGCCCAGTTC 59.996 52.381 0.00 0.00 0.00 3.01
319 320 0.251916 TCCCTGTAATGCCCAGTTCG 59.748 55.000 0.00 0.00 0.00 3.95
320 321 0.251916 CCCTGTAATGCCCAGTTCGA 59.748 55.000 0.00 0.00 0.00 3.71
321 322 1.339631 CCCTGTAATGCCCAGTTCGAA 60.340 52.381 0.00 0.00 0.00 3.71
322 323 2.432444 CCTGTAATGCCCAGTTCGAAA 58.568 47.619 0.00 0.00 0.00 3.46
323 324 3.016736 CCTGTAATGCCCAGTTCGAAAT 58.983 45.455 0.00 0.00 0.00 2.17
324 325 3.443681 CCTGTAATGCCCAGTTCGAAATT 59.556 43.478 0.00 0.00 0.00 1.82
325 326 4.414852 CTGTAATGCCCAGTTCGAAATTG 58.585 43.478 0.00 1.32 0.00 2.32
326 327 2.368655 AATGCCCAGTTCGAAATTGC 57.631 45.000 0.00 4.57 0.00 3.56
327 328 1.255882 ATGCCCAGTTCGAAATTGCA 58.744 45.000 18.26 18.26 0.00 4.08
328 329 0.313672 TGCCCAGTTCGAAATTGCAC 59.686 50.000 13.65 5.40 0.00 4.57
329 330 0.313672 GCCCAGTTCGAAATTGCACA 59.686 50.000 0.00 0.00 0.00 4.57
330 331 1.067635 GCCCAGTTCGAAATTGCACAT 60.068 47.619 0.00 0.00 0.00 3.21
331 332 2.163412 GCCCAGTTCGAAATTGCACATA 59.837 45.455 0.00 0.00 0.00 2.29
332 333 3.731867 GCCCAGTTCGAAATTGCACATAG 60.732 47.826 0.00 0.00 0.00 2.23
333 334 3.689161 CCCAGTTCGAAATTGCACATAGA 59.311 43.478 0.00 0.00 0.00 1.98
334 335 4.437390 CCCAGTTCGAAATTGCACATAGAC 60.437 45.833 0.00 0.00 0.00 2.59
335 336 4.393062 CCAGTTCGAAATTGCACATAGACT 59.607 41.667 0.00 0.00 0.00 3.24
336 337 5.319139 CAGTTCGAAATTGCACATAGACTG 58.681 41.667 0.00 0.00 0.00 3.51
337 338 4.997395 AGTTCGAAATTGCACATAGACTGT 59.003 37.500 0.00 0.00 39.20 3.55
338 339 6.090763 CAGTTCGAAATTGCACATAGACTGTA 59.909 38.462 0.00 0.00 35.91 2.74
339 340 6.818644 AGTTCGAAATTGCACATAGACTGTAT 59.181 34.615 0.00 0.00 35.91 2.29
340 341 7.334421 AGTTCGAAATTGCACATAGACTGTATT 59.666 33.333 0.00 0.00 35.91 1.89
341 342 7.003939 TCGAAATTGCACATAGACTGTATTG 57.996 36.000 0.00 0.00 35.91 1.90
342 343 6.593770 TCGAAATTGCACATAGACTGTATTGT 59.406 34.615 0.00 0.00 35.91 2.71
343 344 6.684131 CGAAATTGCACATAGACTGTATTGTG 59.316 38.462 10.97 10.97 41.80 3.33
344 345 7.412891 CGAAATTGCACATAGACTGTATTGTGA 60.413 37.037 16.68 2.81 41.50 3.58
345 346 7.686438 AATTGCACATAGACTGTATTGTGAA 57.314 32.000 16.68 7.36 41.50 3.18
346 347 6.726258 TTGCACATAGACTGTATTGTGAAG 57.274 37.500 16.68 3.12 41.50 3.02
347 348 5.793817 TGCACATAGACTGTATTGTGAAGT 58.206 37.500 16.68 0.00 41.50 3.01
348 349 5.639082 TGCACATAGACTGTATTGTGAAGTG 59.361 40.000 16.68 0.00 41.50 3.16
349 350 5.063944 GCACATAGACTGTATTGTGAAGTGG 59.936 44.000 16.68 0.00 41.50 4.00
350 351 6.166279 CACATAGACTGTATTGTGAAGTGGT 58.834 40.000 10.15 0.00 41.50 4.16
351 352 6.091305 CACATAGACTGTATTGTGAAGTGGTG 59.909 42.308 10.15 0.00 41.50 4.17
352 353 3.403038 AGACTGTATTGTGAAGTGGTGC 58.597 45.455 0.00 0.00 0.00 5.01
353 354 2.484264 GACTGTATTGTGAAGTGGTGCC 59.516 50.000 0.00 0.00 0.00 5.01
354 355 2.106511 ACTGTATTGTGAAGTGGTGCCT 59.893 45.455 0.00 0.00 0.00 4.75
355 356 3.149196 CTGTATTGTGAAGTGGTGCCTT 58.851 45.455 0.00 0.00 0.00 4.35
356 357 3.561143 TGTATTGTGAAGTGGTGCCTTT 58.439 40.909 0.00 0.00 0.00 3.11
357 358 3.317711 TGTATTGTGAAGTGGTGCCTTTG 59.682 43.478 0.00 0.00 0.00 2.77
358 359 1.846007 TTGTGAAGTGGTGCCTTTGT 58.154 45.000 0.00 0.00 0.00 2.83
359 360 2.719531 TGTGAAGTGGTGCCTTTGTA 57.280 45.000 0.00 0.00 0.00 2.41
360 361 3.006112 TGTGAAGTGGTGCCTTTGTAA 57.994 42.857 0.00 0.00 0.00 2.41
361 362 2.685897 TGTGAAGTGGTGCCTTTGTAAC 59.314 45.455 0.00 0.00 0.00 2.50
362 363 2.685897 GTGAAGTGGTGCCTTTGTAACA 59.314 45.455 0.00 0.00 0.00 2.41
363 364 3.317993 GTGAAGTGGTGCCTTTGTAACAT 59.682 43.478 0.00 0.00 0.00 2.71
364 365 4.517453 GTGAAGTGGTGCCTTTGTAACATA 59.483 41.667 0.00 0.00 0.00 2.29
365 366 5.183140 GTGAAGTGGTGCCTTTGTAACATAT 59.817 40.000 0.00 0.00 0.00 1.78
366 367 5.772672 TGAAGTGGTGCCTTTGTAACATATT 59.227 36.000 0.00 0.00 0.00 1.28
367 368 6.266558 TGAAGTGGTGCCTTTGTAACATATTT 59.733 34.615 0.00 0.00 0.00 1.40
368 369 6.267496 AGTGGTGCCTTTGTAACATATTTC 57.733 37.500 0.00 0.00 0.00 2.17
369 370 5.772672 AGTGGTGCCTTTGTAACATATTTCA 59.227 36.000 0.00 0.00 0.00 2.69
370 371 5.861787 GTGGTGCCTTTGTAACATATTTCAC 59.138 40.000 0.00 0.00 0.00 3.18
371 372 5.536538 TGGTGCCTTTGTAACATATTTCACA 59.463 36.000 0.00 0.00 0.00 3.58
372 373 6.210385 TGGTGCCTTTGTAACATATTTCACAT 59.790 34.615 0.00 0.00 0.00 3.21
373 374 6.751888 GGTGCCTTTGTAACATATTTCACATC 59.248 38.462 0.00 0.00 0.00 3.06
374 375 7.362920 GGTGCCTTTGTAACATATTTCACATCT 60.363 37.037 0.00 0.00 0.00 2.90
375 376 7.485913 GTGCCTTTGTAACATATTTCACATCTG 59.514 37.037 0.00 0.00 0.00 2.90
376 377 6.473455 GCCTTTGTAACATATTTCACATCTGC 59.527 38.462 0.00 0.00 0.00 4.26
377 378 6.688385 CCTTTGTAACATATTTCACATCTGCG 59.312 38.462 0.00 0.00 0.00 5.18
378 379 6.735678 TTGTAACATATTTCACATCTGCGT 57.264 33.333 0.00 0.00 0.00 5.24
379 380 6.344572 TGTAACATATTTCACATCTGCGTC 57.655 37.500 0.00 0.00 0.00 5.19
380 381 4.882671 AACATATTTCACATCTGCGTCC 57.117 40.909 0.00 0.00 0.00 4.79
381 382 4.142609 ACATATTTCACATCTGCGTCCT 57.857 40.909 0.00 0.00 0.00 3.85
382 383 4.122776 ACATATTTCACATCTGCGTCCTC 58.877 43.478 0.00 0.00 0.00 3.71
383 384 2.029838 ATTTCACATCTGCGTCCTCC 57.970 50.000 0.00 0.00 0.00 4.30
384 385 0.389817 TTTCACATCTGCGTCCTCCG 60.390 55.000 0.00 0.00 40.40 4.63
385 386 1.532604 TTCACATCTGCGTCCTCCGT 61.533 55.000 0.00 0.00 39.32 4.69
386 387 1.079819 CACATCTGCGTCCTCCGTT 60.080 57.895 0.00 0.00 39.32 4.44
387 388 0.670546 CACATCTGCGTCCTCCGTTT 60.671 55.000 0.00 0.00 39.32 3.60
388 389 0.892755 ACATCTGCGTCCTCCGTTTA 59.107 50.000 0.00 0.00 39.32 2.01
389 390 1.274167 ACATCTGCGTCCTCCGTTTAA 59.726 47.619 0.00 0.00 39.32 1.52
390 391 2.093658 ACATCTGCGTCCTCCGTTTAAT 60.094 45.455 0.00 0.00 39.32 1.40
391 392 2.754946 TCTGCGTCCTCCGTTTAATT 57.245 45.000 0.00 0.00 39.32 1.40
392 393 3.048337 TCTGCGTCCTCCGTTTAATTT 57.952 42.857 0.00 0.00 39.32 1.82
393 394 2.739913 TCTGCGTCCTCCGTTTAATTTG 59.260 45.455 0.00 0.00 39.32 2.32
394 395 2.739913 CTGCGTCCTCCGTTTAATTTGA 59.260 45.455 0.00 0.00 39.32 2.69
395 396 3.340034 TGCGTCCTCCGTTTAATTTGAT 58.660 40.909 0.00 0.00 39.32 2.57
396 397 4.505808 TGCGTCCTCCGTTTAATTTGATA 58.494 39.130 0.00 0.00 39.32 2.15
397 398 4.936411 TGCGTCCTCCGTTTAATTTGATAA 59.064 37.500 0.00 0.00 39.32 1.75
398 399 5.163834 TGCGTCCTCCGTTTAATTTGATAAC 60.164 40.000 0.00 0.00 39.32 1.89
399 400 5.163834 GCGTCCTCCGTTTAATTTGATAACA 60.164 40.000 0.00 0.00 39.32 2.41
400 401 6.457799 GCGTCCTCCGTTTAATTTGATAACAT 60.458 38.462 0.00 0.00 39.32 2.71
401 402 7.123830 CGTCCTCCGTTTAATTTGATAACATC 58.876 38.462 0.00 0.00 0.00 3.06
402 403 7.201574 CGTCCTCCGTTTAATTTGATAACATCA 60.202 37.037 0.00 0.00 37.55 3.07
403 404 8.621286 GTCCTCCGTTTAATTTGATAACATCAT 58.379 33.333 0.00 0.00 39.39 2.45
404 405 8.620416 TCCTCCGTTTAATTTGATAACATCATG 58.380 33.333 0.00 0.00 39.39 3.07
405 406 7.862372 CCTCCGTTTAATTTGATAACATCATGG 59.138 37.037 0.00 0.00 39.39 3.66
406 407 8.512966 TCCGTTTAATTTGATAACATCATGGA 57.487 30.769 0.00 0.00 39.39 3.41
407 408 9.130661 TCCGTTTAATTTGATAACATCATGGAT 57.869 29.630 0.00 0.00 39.39 3.41
408 409 9.748708 CCGTTTAATTTGATAACATCATGGATT 57.251 29.630 0.00 0.00 39.39 3.01
412 413 6.675413 ATTTGATAACATCATGGATTGGGG 57.325 37.500 0.00 0.00 39.39 4.96
413 414 5.400552 TTGATAACATCATGGATTGGGGA 57.599 39.130 0.00 0.00 39.39 4.81
414 415 5.603915 TGATAACATCATGGATTGGGGAT 57.396 39.130 0.00 0.00 33.59 3.85
415 416 5.326900 TGATAACATCATGGATTGGGGATG 58.673 41.667 0.00 0.00 42.12 3.51
417 418 3.693526 ACATCATGGATTGGGGATGTT 57.306 42.857 0.00 0.00 45.85 2.71
418 419 4.812403 ACATCATGGATTGGGGATGTTA 57.188 40.909 0.00 0.00 45.85 2.41
419 420 5.343833 ACATCATGGATTGGGGATGTTAT 57.656 39.130 0.00 0.00 45.85 1.89
420 421 5.081728 ACATCATGGATTGGGGATGTTATG 58.918 41.667 0.00 0.00 45.85 1.90
421 422 5.162958 ACATCATGGATTGGGGATGTTATGA 60.163 40.000 0.00 0.00 45.85 2.15
422 423 5.603915 TCATGGATTGGGGATGTTATGAT 57.396 39.130 0.00 0.00 0.00 2.45
423 424 5.326900 TCATGGATTGGGGATGTTATGATG 58.673 41.667 0.00 0.00 0.00 3.07
424 425 4.812403 TGGATTGGGGATGTTATGATGT 57.188 40.909 0.00 0.00 0.00 3.06
425 426 4.728772 TGGATTGGGGATGTTATGATGTC 58.271 43.478 0.00 0.00 0.00 3.06
426 427 4.416513 TGGATTGGGGATGTTATGATGTCT 59.583 41.667 0.00 0.00 0.00 3.41
427 428 5.610557 TGGATTGGGGATGTTATGATGTCTA 59.389 40.000 0.00 0.00 0.00 2.59
428 429 5.940470 GGATTGGGGATGTTATGATGTCTAC 59.060 44.000 0.00 0.00 0.00 2.59
429 430 4.974645 TGGGGATGTTATGATGTCTACC 57.025 45.455 0.00 0.00 0.00 3.18
430 431 4.566837 TGGGGATGTTATGATGTCTACCT 58.433 43.478 0.00 0.00 0.00 3.08
431 432 4.347876 TGGGGATGTTATGATGTCTACCTG 59.652 45.833 0.00 0.00 0.00 4.00
432 433 4.348168 GGGGATGTTATGATGTCTACCTGT 59.652 45.833 0.00 0.00 0.00 4.00
433 434 5.163195 GGGGATGTTATGATGTCTACCTGTT 60.163 44.000 0.00 0.00 0.00 3.16
434 435 5.992217 GGGATGTTATGATGTCTACCTGTTC 59.008 44.000 0.00 0.00 0.00 3.18
435 436 6.408092 GGGATGTTATGATGTCTACCTGTTCA 60.408 42.308 0.00 0.00 0.00 3.18
436 437 7.220030 GGATGTTATGATGTCTACCTGTTCAT 58.780 38.462 0.00 0.00 0.00 2.57
437 438 8.367911 GGATGTTATGATGTCTACCTGTTCATA 58.632 37.037 0.00 0.00 0.00 2.15
438 439 9.416794 GATGTTATGATGTCTACCTGTTCATAG 57.583 37.037 0.00 0.00 32.56 2.23
439 440 7.210174 TGTTATGATGTCTACCTGTTCATAGC 58.790 38.462 0.00 0.00 32.56 2.97
440 441 7.069950 TGTTATGATGTCTACCTGTTCATAGCT 59.930 37.037 0.00 0.00 33.95 3.32
441 442 5.268118 TGATGTCTACCTGTTCATAGCTG 57.732 43.478 0.00 0.00 0.00 4.24
442 443 4.711846 TGATGTCTACCTGTTCATAGCTGT 59.288 41.667 0.00 0.00 0.00 4.40
443 444 5.891551 TGATGTCTACCTGTTCATAGCTGTA 59.108 40.000 0.00 0.00 0.00 2.74
444 445 6.551227 TGATGTCTACCTGTTCATAGCTGTAT 59.449 38.462 0.00 0.00 0.00 2.29
445 446 6.791867 TGTCTACCTGTTCATAGCTGTATT 57.208 37.500 0.00 0.00 0.00 1.89
446 447 7.182817 TGTCTACCTGTTCATAGCTGTATTT 57.817 36.000 0.00 0.00 0.00 1.40
447 448 7.620880 TGTCTACCTGTTCATAGCTGTATTTT 58.379 34.615 0.00 0.00 0.00 1.82
448 449 8.100791 TGTCTACCTGTTCATAGCTGTATTTTT 58.899 33.333 0.00 0.00 0.00 1.94
481 482 9.744468 TTCTTTTTCTTACTTATGAAAACCTGC 57.256 29.630 8.72 0.00 40.46 4.85
482 483 9.131791 TCTTTTTCTTACTTATGAAAACCTGCT 57.868 29.630 8.72 0.00 40.46 4.24
483 484 9.185192 CTTTTTCTTACTTATGAAAACCTGCTG 57.815 33.333 8.72 0.00 40.46 4.41
484 485 6.817765 TTCTTACTTATGAAAACCTGCTGG 57.182 37.500 8.29 8.29 39.83 4.85
485 486 6.121776 TCTTACTTATGAAAACCTGCTGGA 57.878 37.500 17.64 0.00 37.04 3.86
486 487 6.173339 TCTTACTTATGAAAACCTGCTGGAG 58.827 40.000 17.64 2.94 37.04 3.86
487 488 4.373156 ACTTATGAAAACCTGCTGGAGT 57.627 40.909 17.64 3.60 37.04 3.85
488 489 4.327680 ACTTATGAAAACCTGCTGGAGTC 58.672 43.478 17.64 10.27 37.04 3.36
489 490 2.957402 ATGAAAACCTGCTGGAGTCA 57.043 45.000 17.64 15.20 37.04 3.41
490 491 2.957402 TGAAAACCTGCTGGAGTCAT 57.043 45.000 17.64 0.00 37.04 3.06
491 492 3.228188 TGAAAACCTGCTGGAGTCATT 57.772 42.857 17.64 3.54 37.04 2.57
492 493 4.365514 TGAAAACCTGCTGGAGTCATTA 57.634 40.909 17.64 0.00 37.04 1.90
493 494 4.724399 TGAAAACCTGCTGGAGTCATTAA 58.276 39.130 17.64 0.00 37.04 1.40
494 495 4.518970 TGAAAACCTGCTGGAGTCATTAAC 59.481 41.667 17.64 0.00 37.04 2.01
495 496 2.789409 ACCTGCTGGAGTCATTAACC 57.211 50.000 17.64 0.00 37.04 2.85
496 497 1.282157 ACCTGCTGGAGTCATTAACCC 59.718 52.381 17.64 0.00 37.04 4.11
497 498 1.408822 CCTGCTGGAGTCATTAACCCC 60.409 57.143 2.92 0.00 34.57 4.95
498 499 1.561542 CTGCTGGAGTCATTAACCCCT 59.438 52.381 0.00 0.00 0.00 4.79
499 500 1.559682 TGCTGGAGTCATTAACCCCTC 59.440 52.381 0.00 0.00 0.00 4.30
500 501 1.559682 GCTGGAGTCATTAACCCCTCA 59.440 52.381 0.00 0.00 0.00 3.86
501 502 2.681097 GCTGGAGTCATTAACCCCTCAC 60.681 54.545 0.00 0.00 0.00 3.51
502 503 1.913419 TGGAGTCATTAACCCCTCACC 59.087 52.381 0.00 0.00 0.00 4.02
503 504 1.913419 GGAGTCATTAACCCCTCACCA 59.087 52.381 0.00 0.00 0.00 4.17
504 505 2.307686 GGAGTCATTAACCCCTCACCAA 59.692 50.000 0.00 0.00 0.00 3.67
505 506 3.245122 GGAGTCATTAACCCCTCACCAAA 60.245 47.826 0.00 0.00 0.00 3.28
506 507 3.756963 GAGTCATTAACCCCTCACCAAAC 59.243 47.826 0.00 0.00 0.00 2.93
507 508 2.823747 GTCATTAACCCCTCACCAAACC 59.176 50.000 0.00 0.00 0.00 3.27
508 509 2.719705 TCATTAACCCCTCACCAAACCT 59.280 45.455 0.00 0.00 0.00 3.50
509 510 2.668144 TTAACCCCTCACCAAACCTG 57.332 50.000 0.00 0.00 0.00 4.00
510 511 1.822425 TAACCCCTCACCAAACCTGA 58.178 50.000 0.00 0.00 0.00 3.86
511 512 0.930726 AACCCCTCACCAAACCTGAA 59.069 50.000 0.00 0.00 0.00 3.02
512 513 1.158007 ACCCCTCACCAAACCTGAAT 58.842 50.000 0.00 0.00 0.00 2.57
513 514 1.503347 ACCCCTCACCAAACCTGAATT 59.497 47.619 0.00 0.00 0.00 2.17
514 515 1.895131 CCCCTCACCAAACCTGAATTG 59.105 52.381 0.00 0.00 0.00 2.32
515 516 2.490718 CCCCTCACCAAACCTGAATTGA 60.491 50.000 0.00 0.00 0.00 2.57
516 517 3.434309 CCCTCACCAAACCTGAATTGAT 58.566 45.455 0.00 0.00 0.00 2.57
517 518 3.194116 CCCTCACCAAACCTGAATTGATG 59.806 47.826 0.00 0.00 0.00 3.07
518 519 3.367703 CCTCACCAAACCTGAATTGATGC 60.368 47.826 0.00 0.00 0.00 3.91
519 520 3.499338 TCACCAAACCTGAATTGATGCT 58.501 40.909 0.00 0.00 0.00 3.79
520 521 3.256383 TCACCAAACCTGAATTGATGCTG 59.744 43.478 0.00 0.00 0.00 4.41
521 522 2.028748 ACCAAACCTGAATTGATGCTGC 60.029 45.455 0.00 0.00 0.00 5.25
522 523 2.613691 CAAACCTGAATTGATGCTGCC 58.386 47.619 0.00 0.00 0.00 4.85
523 524 1.188863 AACCTGAATTGATGCTGCCC 58.811 50.000 0.00 0.00 0.00 5.36
524 525 0.040058 ACCTGAATTGATGCTGCCCA 59.960 50.000 0.00 0.00 0.00 5.36
525 526 0.744874 CCTGAATTGATGCTGCCCAG 59.255 55.000 0.00 0.00 0.00 4.45
526 527 0.744874 CTGAATTGATGCTGCCCAGG 59.255 55.000 0.00 0.00 0.00 4.45
527 528 1.324740 TGAATTGATGCTGCCCAGGC 61.325 55.000 0.38 0.38 42.35 4.85
528 529 2.024590 GAATTGATGCTGCCCAGGCC 62.025 60.000 6.14 0.00 41.09 5.19
529 530 4.764771 TTGATGCTGCCCAGGCCC 62.765 66.667 6.14 0.00 41.09 5.80
531 532 4.764771 GATGCTGCCCAGGCCCAA 62.765 66.667 6.14 0.00 41.09 4.12
532 533 4.084147 ATGCTGCCCAGGCCCAAT 62.084 61.111 6.14 0.00 41.09 3.16
533 534 3.629035 ATGCTGCCCAGGCCCAATT 62.629 57.895 6.14 0.00 41.09 2.32
534 535 3.464494 GCTGCCCAGGCCCAATTC 61.464 66.667 6.14 0.00 41.09 2.17
535 536 2.761213 CTGCCCAGGCCCAATTCC 60.761 66.667 6.14 0.00 41.09 3.01
536 537 4.757355 TGCCCAGGCCCAATTCCG 62.757 66.667 6.14 0.00 41.09 4.30
538 539 4.757355 CCCAGGCCCAATTCCGCA 62.757 66.667 0.00 0.00 0.00 5.69
539 540 2.442643 CCAGGCCCAATTCCGCAT 60.443 61.111 0.00 0.00 0.00 4.73
540 541 2.788640 CCAGGCCCAATTCCGCATG 61.789 63.158 0.00 1.81 36.57 4.06
541 542 2.053865 CAGGCCCAATTCCGCATGT 61.054 57.895 0.00 0.00 32.36 3.21
542 543 0.751277 CAGGCCCAATTCCGCATGTA 60.751 55.000 0.00 0.00 32.36 2.29
543 544 0.033601 AGGCCCAATTCCGCATGTAA 60.034 50.000 0.00 0.00 0.00 2.41
544 545 0.820871 GGCCCAATTCCGCATGTAAA 59.179 50.000 0.00 0.00 0.00 2.01
545 546 1.412343 GGCCCAATTCCGCATGTAAAT 59.588 47.619 0.00 0.00 0.00 1.40
546 547 2.472816 GCCCAATTCCGCATGTAAATG 58.527 47.619 0.00 0.00 0.00 2.32
547 548 2.100584 GCCCAATTCCGCATGTAAATGA 59.899 45.455 0.00 0.00 0.00 2.57
548 549 3.796504 GCCCAATTCCGCATGTAAATGAG 60.797 47.826 0.00 0.00 0.00 2.90
549 550 3.381272 CCCAATTCCGCATGTAAATGAGT 59.619 43.478 0.00 0.00 0.00 3.41
550 551 4.142182 CCCAATTCCGCATGTAAATGAGTT 60.142 41.667 0.00 0.00 0.00 3.01
551 552 5.410067 CCAATTCCGCATGTAAATGAGTTT 58.590 37.500 0.00 0.00 0.00 2.66
552 553 5.516339 CCAATTCCGCATGTAAATGAGTTTC 59.484 40.000 0.00 0.00 0.00 2.78
553 554 6.324819 CAATTCCGCATGTAAATGAGTTTCT 58.675 36.000 0.00 0.00 0.00 2.52
554 555 5.957842 TTCCGCATGTAAATGAGTTTCTT 57.042 34.783 0.00 0.00 0.00 2.52
555 556 5.957842 TCCGCATGTAAATGAGTTTCTTT 57.042 34.783 0.00 0.00 0.00 2.52
556 557 6.325919 TCCGCATGTAAATGAGTTTCTTTT 57.674 33.333 0.00 0.00 0.00 2.27
557 558 6.378582 TCCGCATGTAAATGAGTTTCTTTTC 58.621 36.000 0.00 0.00 0.00 2.29
558 559 6.206634 TCCGCATGTAAATGAGTTTCTTTTCT 59.793 34.615 0.00 0.00 0.00 2.52
559 560 6.863126 CCGCATGTAAATGAGTTTCTTTTCTT 59.137 34.615 0.00 0.00 0.00 2.52
560 561 7.382218 CCGCATGTAAATGAGTTTCTTTTCTTT 59.618 33.333 0.00 0.00 0.00 2.52
561 562 8.755018 CGCATGTAAATGAGTTTCTTTTCTTTT 58.245 29.630 0.00 0.00 0.00 2.27
601 602 7.568349 TGATATCCAATTTCTGTACTTCTGCT 58.432 34.615 0.00 0.00 0.00 4.24
618 619 8.549338 ACTTCTGCTTAGTTCTTAATTGTACC 57.451 34.615 0.00 0.00 0.00 3.34
619 620 7.606839 ACTTCTGCTTAGTTCTTAATTGTACCC 59.393 37.037 0.00 0.00 0.00 3.69
626 627 5.557866 AGTTCTTAATTGTACCCGAGCTTT 58.442 37.500 0.00 0.00 0.00 3.51
628 629 6.148976 AGTTCTTAATTGTACCCGAGCTTTTC 59.851 38.462 0.00 0.00 0.00 2.29
637 638 2.158813 ACCCGAGCTTTTCTGTTGAGAA 60.159 45.455 0.00 0.00 36.36 2.87
677 678 1.556911 TGGACTCAGATTGAAGGGAGC 59.443 52.381 0.00 0.00 0.00 4.70
694 695 5.254115 AGGGAGCTAAATGTTTTGTCTACC 58.746 41.667 0.00 0.00 0.00 3.18
760 766 8.801715 TCTGAATGTTGCTGAATAAGAAAAAC 57.198 30.769 0.00 0.00 0.00 2.43
792 798 7.765695 TGGAACTTCTCTTATGAATTTTGCT 57.234 32.000 0.00 0.00 0.00 3.91
797 803 5.571784 TCTCTTATGAATTTTGCTGCCAG 57.428 39.130 0.00 0.00 0.00 4.85
819 825 2.109128 TCTGAGTGGTTTGGGCCATAAA 59.891 45.455 7.26 2.13 41.08 1.40
1041 2543 5.182760 CCTTTAGATGCATGGAAGCTTATCC 59.817 44.000 2.46 0.00 40.10 2.59
1053 2555 2.911484 AGCTTATCCACTTGCTGCTAC 58.089 47.619 0.00 0.00 34.19 3.58
1069 2571 5.065090 TGCTGCTACTACATGCTGTTTTATG 59.935 40.000 0.00 0.00 0.00 1.90
1074 2576 8.204160 TGCTACTACATGCTGTTTTATGTCTAT 58.796 33.333 0.00 0.00 38.41 1.98
1092 2594 7.615582 TGTCTATTTCTTGAAGCTTATGGTG 57.384 36.000 0.00 0.00 0.00 4.17
1096 2607 9.466497 TCTATTTCTTGAAGCTTATGGTGATTT 57.534 29.630 0.00 0.00 0.00 2.17
1160 2676 4.681978 GGCAAGACCGTCACCGCT 62.682 66.667 0.40 0.00 0.00 5.52
1220 2736 1.700042 GGGGTGGATCCAAGCGATCT 61.700 60.000 18.20 0.00 45.90 2.75
1433 2949 1.141657 AGCATGGTGGTGAATAGCGAT 59.858 47.619 0.00 0.00 0.00 4.58
1469 2985 3.371097 GACCGGCTCCTTGATGCGA 62.371 63.158 0.00 0.00 0.00 5.10
1555 3080 2.194859 AGAGGGCACTGATGATCAAGT 58.805 47.619 0.00 0.00 0.00 3.16
1556 3081 2.093075 AGAGGGCACTGATGATCAAGTG 60.093 50.000 19.14 19.14 32.51 3.16
1655 3180 1.374252 GCCGTTGTCTGACATCCGT 60.374 57.895 21.21 0.00 0.00 4.69
1751 3276 0.764890 CCAAGGTGGTCAAGGAGTCA 59.235 55.000 0.00 0.00 31.35 3.41
2081 3606 7.361127 GTGATTGATTGATGATCTTCATGGAC 58.639 38.462 11.72 5.41 37.20 4.02
2153 3681 5.279006 GCTATGGATCGATCACAAAGGACTA 60.279 44.000 25.93 9.24 0.00 2.59
2330 3874 9.715121 ATGTTTCTTGTGATTGATAATTTGCTT 57.285 25.926 0.00 0.00 0.00 3.91
2340 3886 8.149647 TGATTGATAATTTGCTTTGTCTGGTTT 58.850 29.630 0.00 0.00 0.00 3.27
2346 3892 3.988379 TGCTTTGTCTGGTTTAGCAAG 57.012 42.857 0.00 0.00 38.76 4.01
2368 3914 3.434309 CTGGGAGGGAACAAAATGATGT 58.566 45.455 0.00 0.00 34.24 3.06
2374 3920 2.730928 GGGAACAAAATGATGTTGTGCG 59.269 45.455 1.02 0.00 43.31 5.34
2385 3931 9.716507 AAAATGATGTTGTGCGTATATTTAGAC 57.283 29.630 0.00 0.00 0.00 2.59
2387 3933 8.607441 ATGATGTTGTGCGTATATTTAGACAT 57.393 30.769 0.00 0.00 0.00 3.06
2389 3944 6.043327 TGTTGTGCGTATATTTAGACATGC 57.957 37.500 0.00 0.00 0.00 4.06
2497 4064 8.484641 TGATTCAGATCAGTGTAATTTCTGTC 57.515 34.615 0.00 0.00 37.37 3.51
2514 4085 5.097742 TCTGTCGGTGTAAATCCATCATT 57.902 39.130 0.00 0.00 0.00 2.57
2515 4086 6.228616 TCTGTCGGTGTAAATCCATCATTA 57.771 37.500 0.00 0.00 0.00 1.90
2516 4087 6.826668 TCTGTCGGTGTAAATCCATCATTAT 58.173 36.000 0.00 0.00 0.00 1.28
2517 4088 7.958088 TCTGTCGGTGTAAATCCATCATTATA 58.042 34.615 0.00 0.00 0.00 0.98
2557 4128 7.923878 TGATTGATTGATTTGCCATTCATACTG 59.076 33.333 0.00 0.00 0.00 2.74
2731 4322 7.219131 ACATGATTTGTATAGCTGCTGCTGC 62.219 44.000 26.48 21.92 42.99 5.25
2754 4348 8.029642 TGCTATTTGCTTTCTAGTTTCTGTAC 57.970 34.615 0.00 0.00 43.37 2.90
2770 4364 1.414919 TGTACCTGCTGTTCCGTCTTT 59.585 47.619 0.00 0.00 0.00 2.52
2784 4378 3.689161 TCCGTCTTTAGAAACATGCATGG 59.311 43.478 29.41 12.50 0.00 3.66
2799 4393 2.238395 TGCATGGGTTGAGCTACATACA 59.762 45.455 0.00 0.00 0.00 2.29
2890 4495 8.218338 AGATCCATCATGTTGAAAGTTATCAC 57.782 34.615 5.30 0.00 0.00 3.06
2895 4500 8.611757 CCATCATGTTGAAAGTTATCACGATTA 58.388 33.333 5.30 0.00 0.00 1.75
2905 4510 7.391148 AAGTTATCACGATTAAACTTGCCAT 57.609 32.000 7.00 0.00 39.89 4.40
2918 4523 6.949352 AAACTTGCCATTCATATGTCCTAG 57.051 37.500 1.90 0.00 0.00 3.02
2919 4524 5.636903 ACTTGCCATTCATATGTCCTAGT 57.363 39.130 1.90 0.00 0.00 2.57
2920 4525 6.747414 ACTTGCCATTCATATGTCCTAGTA 57.253 37.500 1.90 0.00 0.00 1.82
2921 4526 6.763355 ACTTGCCATTCATATGTCCTAGTAG 58.237 40.000 1.90 0.00 0.00 2.57
2922 4527 6.554982 ACTTGCCATTCATATGTCCTAGTAGA 59.445 38.462 1.90 0.00 0.00 2.59
2923 4528 7.236432 ACTTGCCATTCATATGTCCTAGTAGAT 59.764 37.037 1.90 0.00 0.00 1.98
2924 4529 6.939622 TGCCATTCATATGTCCTAGTAGATG 58.060 40.000 1.90 0.00 0.00 2.90
2944 4556 2.429250 TGCAATGCCTCTGGAATGAATG 59.571 45.455 1.53 0.00 0.00 2.67
2972 4620 5.178623 CCAGTTTTGCACTAATAACTGACGA 59.821 40.000 18.68 0.00 46.43 4.20
3008 4656 4.079958 GGAATCCTGGTGGTATTTACTGGT 60.080 45.833 0.00 0.00 34.23 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.009774 CAATTTCAGGGTGCTAGACGG 58.990 52.381 0.00 0.00 0.00 4.79
1 2 1.398390 GCAATTTCAGGGTGCTAGACG 59.602 52.381 0.00 0.00 35.36 4.18
2 3 2.716217 AGCAATTTCAGGGTGCTAGAC 58.284 47.619 0.00 0.00 46.52 2.59
7 8 0.961019 TGTGAGCAATTTCAGGGTGC 59.039 50.000 0.00 0.00 38.59 5.01
8 9 2.886523 TCTTGTGAGCAATTTCAGGGTG 59.113 45.455 0.00 0.00 33.65 4.61
9 10 3.228188 TCTTGTGAGCAATTTCAGGGT 57.772 42.857 0.00 0.00 33.65 4.34
10 11 3.571401 AGTTCTTGTGAGCAATTTCAGGG 59.429 43.478 0.00 0.00 33.65 4.45
11 12 4.843220 AGTTCTTGTGAGCAATTTCAGG 57.157 40.909 0.00 0.00 33.65 3.86
12 13 6.307318 GCATAAGTTCTTGTGAGCAATTTCAG 59.693 38.462 12.22 0.00 33.65 3.02
13 14 6.151691 GCATAAGTTCTTGTGAGCAATTTCA 58.848 36.000 12.22 0.00 33.65 2.69
14 15 6.151691 TGCATAAGTTCTTGTGAGCAATTTC 58.848 36.000 12.22 0.00 33.65 2.17
15 16 6.016024 TCTGCATAAGTTCTTGTGAGCAATTT 60.016 34.615 12.22 0.00 33.65 1.82
16 17 5.474532 TCTGCATAAGTTCTTGTGAGCAATT 59.525 36.000 12.22 0.00 33.65 2.32
17 18 5.005740 TCTGCATAAGTTCTTGTGAGCAAT 58.994 37.500 12.22 0.00 33.65 3.56
18 19 4.214119 GTCTGCATAAGTTCTTGTGAGCAA 59.786 41.667 12.22 0.00 0.00 3.91
19 20 3.748048 GTCTGCATAAGTTCTTGTGAGCA 59.252 43.478 12.22 7.73 0.00 4.26
20 21 3.126000 GGTCTGCATAAGTTCTTGTGAGC 59.874 47.826 12.22 4.23 0.00 4.26
21 22 4.573900 AGGTCTGCATAAGTTCTTGTGAG 58.426 43.478 12.22 7.54 0.00 3.51
22 23 4.623932 AGGTCTGCATAAGTTCTTGTGA 57.376 40.909 12.22 0.00 0.00 3.58
23 24 4.756642 TCAAGGTCTGCATAAGTTCTTGTG 59.243 41.667 5.21 5.21 37.78 3.33
24 25 4.973168 TCAAGGTCTGCATAAGTTCTTGT 58.027 39.130 0.00 0.00 37.78 3.16
25 26 5.240891 TCTCAAGGTCTGCATAAGTTCTTG 58.759 41.667 0.00 0.00 37.84 3.02
26 27 5.486526 CTCTCAAGGTCTGCATAAGTTCTT 58.513 41.667 0.00 0.00 0.00 2.52
27 28 4.081198 CCTCTCAAGGTCTGCATAAGTTCT 60.081 45.833 0.00 0.00 37.94 3.01
28 29 4.187694 CCTCTCAAGGTCTGCATAAGTTC 58.812 47.826 0.00 0.00 37.94 3.01
29 30 3.620966 GCCTCTCAAGGTCTGCATAAGTT 60.621 47.826 0.00 0.00 45.34 2.66
30 31 2.093235 GCCTCTCAAGGTCTGCATAAGT 60.093 50.000 0.00 0.00 45.34 2.24
31 32 2.093288 TGCCTCTCAAGGTCTGCATAAG 60.093 50.000 0.00 0.00 45.34 1.73
32 33 1.908619 TGCCTCTCAAGGTCTGCATAA 59.091 47.619 0.00 0.00 45.34 1.90
33 34 1.483827 CTGCCTCTCAAGGTCTGCATA 59.516 52.381 0.00 0.00 45.34 3.14
34 35 0.252479 CTGCCTCTCAAGGTCTGCAT 59.748 55.000 0.00 0.00 45.34 3.96
35 36 1.675801 CTGCCTCTCAAGGTCTGCA 59.324 57.895 0.00 0.00 45.34 4.41
36 37 1.744741 GCTGCCTCTCAAGGTCTGC 60.745 63.158 0.00 0.00 45.34 4.26
37 38 0.391395 CAGCTGCCTCTCAAGGTCTG 60.391 60.000 0.00 0.00 45.34 3.51
38 39 0.543883 TCAGCTGCCTCTCAAGGTCT 60.544 55.000 9.47 0.00 45.34 3.85
39 40 0.540923 ATCAGCTGCCTCTCAAGGTC 59.459 55.000 9.47 0.00 45.34 3.85
40 41 0.990374 AATCAGCTGCCTCTCAAGGT 59.010 50.000 9.47 0.00 45.34 3.50
41 42 1.339824 ACAATCAGCTGCCTCTCAAGG 60.340 52.381 9.47 0.00 46.44 3.61
42 43 2.110901 ACAATCAGCTGCCTCTCAAG 57.889 50.000 9.47 0.00 0.00 3.02
43 44 2.430465 GAACAATCAGCTGCCTCTCAA 58.570 47.619 9.47 0.00 0.00 3.02
44 45 1.673923 CGAACAATCAGCTGCCTCTCA 60.674 52.381 9.47 0.00 0.00 3.27
45 46 1.005340 CGAACAATCAGCTGCCTCTC 58.995 55.000 9.47 0.81 0.00 3.20
46 47 0.392193 CCGAACAATCAGCTGCCTCT 60.392 55.000 9.47 0.00 0.00 3.69
47 48 1.372087 CCCGAACAATCAGCTGCCTC 61.372 60.000 9.47 0.00 0.00 4.70
48 49 1.377725 CCCGAACAATCAGCTGCCT 60.378 57.895 9.47 0.00 0.00 4.75
49 50 1.244019 AACCCGAACAATCAGCTGCC 61.244 55.000 9.47 0.00 0.00 4.85
50 51 0.169009 GAACCCGAACAATCAGCTGC 59.831 55.000 9.47 0.00 0.00 5.25
51 52 0.443869 CGAACCCGAACAATCAGCTG 59.556 55.000 7.63 7.63 38.22 4.24
52 53 0.320374 TCGAACCCGAACAATCAGCT 59.680 50.000 0.00 0.00 42.51 4.24
53 54 2.835605 TCGAACCCGAACAATCAGC 58.164 52.632 0.00 0.00 42.51 4.26
69 70 5.459107 CACTCTAACAAGAATTCGGGTATCG 59.541 44.000 0.00 0.00 40.90 2.92
70 71 6.338937 ACACTCTAACAAGAATTCGGGTATC 58.661 40.000 0.00 0.00 0.00 2.24
71 72 6.295719 ACACTCTAACAAGAATTCGGGTAT 57.704 37.500 0.00 0.00 0.00 2.73
72 73 5.733620 ACACTCTAACAAGAATTCGGGTA 57.266 39.130 0.00 0.00 0.00 3.69
73 74 4.618920 ACACTCTAACAAGAATTCGGGT 57.381 40.909 0.00 0.00 0.00 5.28
74 75 5.941948 AAACACTCTAACAAGAATTCGGG 57.058 39.130 0.00 0.00 0.00 5.14
95 96 8.402798 TGAGATGGTTTTCAGCTATACAAAAA 57.597 30.769 0.00 0.00 42.92 1.94
96 97 7.665559 ACTGAGATGGTTTTCAGCTATACAAAA 59.334 33.333 1.66 0.00 42.92 2.44
97 98 7.168219 ACTGAGATGGTTTTCAGCTATACAAA 58.832 34.615 1.66 0.00 42.92 2.83
98 99 6.711277 ACTGAGATGGTTTTCAGCTATACAA 58.289 36.000 1.66 0.00 42.92 2.41
99 100 6.299805 ACTGAGATGGTTTTCAGCTATACA 57.700 37.500 1.66 0.00 42.92 2.29
100 101 6.926272 CCTACTGAGATGGTTTTCAGCTATAC 59.074 42.308 1.66 0.00 42.92 1.47
101 102 6.611642 ACCTACTGAGATGGTTTTCAGCTATA 59.388 38.462 1.66 0.00 42.92 1.31
102 103 5.426833 ACCTACTGAGATGGTTTTCAGCTAT 59.573 40.000 1.66 0.00 42.92 2.97
103 104 4.777896 ACCTACTGAGATGGTTTTCAGCTA 59.222 41.667 1.66 0.00 42.92 3.32
104 105 3.584848 ACCTACTGAGATGGTTTTCAGCT 59.415 43.478 1.66 0.00 45.95 4.24
105 106 3.944087 ACCTACTGAGATGGTTTTCAGC 58.056 45.455 1.66 0.00 43.59 4.26
106 107 5.641209 CAGAACCTACTGAGATGGTTTTCAG 59.359 44.000 13.02 0.27 43.28 3.02
107 108 5.071788 ACAGAACCTACTGAGATGGTTTTCA 59.928 40.000 13.02 0.00 43.28 2.69
108 109 5.552178 ACAGAACCTACTGAGATGGTTTTC 58.448 41.667 13.02 4.54 43.28 2.29
109 110 5.568620 ACAGAACCTACTGAGATGGTTTT 57.431 39.130 13.02 6.87 43.28 2.43
110 111 6.681729 TTACAGAACCTACTGAGATGGTTT 57.318 37.500 13.02 3.51 43.28 3.27
111 112 6.352222 CCATTACAGAACCTACTGAGATGGTT 60.352 42.308 12.02 12.02 45.57 3.67
112 113 5.129485 CCATTACAGAACCTACTGAGATGGT 59.871 44.000 17.52 0.00 41.99 3.55
113 114 5.129485 ACCATTACAGAACCTACTGAGATGG 59.871 44.000 20.81 20.81 46.10 3.51
114 115 6.045318 CACCATTACAGAACCTACTGAGATG 58.955 44.000 0.00 0.00 40.63 2.90
115 116 5.721960 ACACCATTACAGAACCTACTGAGAT 59.278 40.000 0.00 0.00 40.63 2.75
116 117 5.084519 ACACCATTACAGAACCTACTGAGA 58.915 41.667 0.00 0.00 40.63 3.27
117 118 5.407407 ACACCATTACAGAACCTACTGAG 57.593 43.478 0.00 0.00 40.63 3.35
118 119 5.776208 TGTACACCATTACAGAACCTACTGA 59.224 40.000 0.00 0.00 40.63 3.41
119 120 6.032956 TGTACACCATTACAGAACCTACTG 57.967 41.667 0.00 0.00 42.78 2.74
120 121 6.675413 TTGTACACCATTACAGAACCTACT 57.325 37.500 0.00 0.00 33.50 2.57
121 122 6.707161 TGTTTGTACACCATTACAGAACCTAC 59.293 38.462 0.00 0.00 33.50 3.18
122 123 6.828788 TGTTTGTACACCATTACAGAACCTA 58.171 36.000 0.00 0.00 33.50 3.08
123 124 5.686753 TGTTTGTACACCATTACAGAACCT 58.313 37.500 0.00 0.00 33.50 3.50
124 125 6.380095 TTGTTTGTACACCATTACAGAACC 57.620 37.500 0.00 0.00 33.50 3.62
128 129 9.906660 ACAAATATTGTTTGTACACCATTACAG 57.093 29.630 9.48 0.00 42.22 2.74
145 146 4.201950 CCTCTCCGGCTGAAACAAATATTG 60.202 45.833 0.00 0.00 0.00 1.90
146 147 3.947834 CCTCTCCGGCTGAAACAAATATT 59.052 43.478 0.00 0.00 0.00 1.28
147 148 3.545703 CCTCTCCGGCTGAAACAAATAT 58.454 45.455 0.00 0.00 0.00 1.28
148 149 2.985896 CCTCTCCGGCTGAAACAAATA 58.014 47.619 0.00 0.00 0.00 1.40
149 150 1.826385 CCTCTCCGGCTGAAACAAAT 58.174 50.000 0.00 0.00 0.00 2.32
150 151 3.322514 CCTCTCCGGCTGAAACAAA 57.677 52.632 0.00 0.00 0.00 2.83
166 167 9.462606 AAATACAAATTTACTAGCAAGTAGCCT 57.537 29.630 0.00 0.00 39.36 4.58
189 190 9.268268 CCATTTGCAGCAATTCAGATATAAAAT 57.732 29.630 9.12 0.00 0.00 1.82
190 191 7.711772 CCCATTTGCAGCAATTCAGATATAAAA 59.288 33.333 9.12 0.00 0.00 1.52
191 192 7.147689 ACCCATTTGCAGCAATTCAGATATAAA 60.148 33.333 9.12 0.00 0.00 1.40
192 193 6.324512 ACCCATTTGCAGCAATTCAGATATAA 59.675 34.615 9.12 0.00 0.00 0.98
193 194 5.834742 ACCCATTTGCAGCAATTCAGATATA 59.165 36.000 9.12 0.00 0.00 0.86
194 195 4.652421 ACCCATTTGCAGCAATTCAGATAT 59.348 37.500 9.12 0.00 0.00 1.63
195 196 4.025360 ACCCATTTGCAGCAATTCAGATA 58.975 39.130 9.12 0.00 0.00 1.98
196 197 2.835764 ACCCATTTGCAGCAATTCAGAT 59.164 40.909 9.12 0.00 0.00 2.90
197 198 2.028839 CACCCATTTGCAGCAATTCAGA 60.029 45.455 9.12 0.00 0.00 3.27
198 199 2.289195 ACACCCATTTGCAGCAATTCAG 60.289 45.455 9.12 1.49 0.00 3.02
199 200 1.693062 ACACCCATTTGCAGCAATTCA 59.307 42.857 9.12 0.00 0.00 2.57
200 201 2.070783 CACACCCATTTGCAGCAATTC 58.929 47.619 9.12 0.00 0.00 2.17
201 202 1.693062 TCACACCCATTTGCAGCAATT 59.307 42.857 9.12 2.17 0.00 2.32
202 203 1.340088 TCACACCCATTTGCAGCAAT 58.660 45.000 9.12 0.00 0.00 3.56
203 204 1.117994 TTCACACCCATTTGCAGCAA 58.882 45.000 2.83 2.83 0.00 3.91
204 205 1.117994 TTTCACACCCATTTGCAGCA 58.882 45.000 0.00 0.00 0.00 4.41
205 206 2.460757 ATTTCACACCCATTTGCAGC 57.539 45.000 0.00 0.00 0.00 5.25
206 207 3.731089 ACAATTTCACACCCATTTGCAG 58.269 40.909 0.00 0.00 0.00 4.41
207 208 3.834489 ACAATTTCACACCCATTTGCA 57.166 38.095 0.00 0.00 0.00 4.08
208 209 4.626042 TGTACAATTTCACACCCATTTGC 58.374 39.130 0.00 0.00 0.00 3.68
209 210 5.920273 GTCTGTACAATTTCACACCCATTTG 59.080 40.000 0.00 0.00 0.00 2.32
210 211 5.278266 CGTCTGTACAATTTCACACCCATTT 60.278 40.000 0.00 0.00 0.00 2.32
211 212 4.215399 CGTCTGTACAATTTCACACCCATT 59.785 41.667 0.00 0.00 0.00 3.16
212 213 3.751175 CGTCTGTACAATTTCACACCCAT 59.249 43.478 0.00 0.00 0.00 4.00
213 214 3.135225 CGTCTGTACAATTTCACACCCA 58.865 45.455 0.00 0.00 0.00 4.51
214 215 2.095919 GCGTCTGTACAATTTCACACCC 60.096 50.000 0.00 0.00 0.00 4.61
215 216 2.095919 GGCGTCTGTACAATTTCACACC 60.096 50.000 0.00 0.00 0.00 4.16
216 217 2.546368 TGGCGTCTGTACAATTTCACAC 59.454 45.455 0.00 0.00 0.00 3.82
217 218 2.805671 CTGGCGTCTGTACAATTTCACA 59.194 45.455 0.00 0.00 0.00 3.58
218 219 2.159627 CCTGGCGTCTGTACAATTTCAC 59.840 50.000 0.00 0.00 0.00 3.18
219 220 2.422597 CCTGGCGTCTGTACAATTTCA 58.577 47.619 0.00 0.00 0.00 2.69
220 221 1.737793 CCCTGGCGTCTGTACAATTTC 59.262 52.381 0.00 0.00 0.00 2.17
221 222 1.073284 ACCCTGGCGTCTGTACAATTT 59.927 47.619 0.00 0.00 0.00 1.82
222 223 0.690762 ACCCTGGCGTCTGTACAATT 59.309 50.000 0.00 0.00 0.00 2.32
223 224 1.563924 TACCCTGGCGTCTGTACAAT 58.436 50.000 0.00 0.00 0.00 2.71
224 225 1.340088 TTACCCTGGCGTCTGTACAA 58.660 50.000 0.00 0.00 0.00 2.41
225 226 1.479323 GATTACCCTGGCGTCTGTACA 59.521 52.381 0.00 0.00 0.00 2.90
226 227 1.479323 TGATTACCCTGGCGTCTGTAC 59.521 52.381 0.00 0.00 0.00 2.90
227 228 1.754803 CTGATTACCCTGGCGTCTGTA 59.245 52.381 0.00 0.00 0.00 2.74
228 229 0.537188 CTGATTACCCTGGCGTCTGT 59.463 55.000 0.00 0.00 0.00 3.41
229 230 0.179073 CCTGATTACCCTGGCGTCTG 60.179 60.000 0.00 0.00 0.00 3.51
237 238 2.270434 TTCTCCAGCCTGATTACCCT 57.730 50.000 0.00 0.00 0.00 4.34
241 242 6.560003 TTGTATCTTTCTCCAGCCTGATTA 57.440 37.500 0.00 0.00 0.00 1.75
243 244 5.189180 GTTTGTATCTTTCTCCAGCCTGAT 58.811 41.667 0.00 0.00 0.00 2.90
277 278 9.847224 GGGACAGTTTGGAAATATAGAGATTAA 57.153 33.333 0.00 0.00 0.00 1.40
280 281 7.127955 ACAGGGACAGTTTGGAAATATAGAGAT 59.872 37.037 0.00 0.00 0.00 2.75
281 282 6.443849 ACAGGGACAGTTTGGAAATATAGAGA 59.556 38.462 0.00 0.00 0.00 3.10
284 285 8.840321 CATTACAGGGACAGTTTGGAAATATAG 58.160 37.037 0.00 0.00 0.00 1.31
285 286 7.284489 GCATTACAGGGACAGTTTGGAAATATA 59.716 37.037 0.00 0.00 0.00 0.86
287 288 5.417580 GCATTACAGGGACAGTTTGGAAATA 59.582 40.000 0.00 0.00 0.00 1.40
288 289 4.220602 GCATTACAGGGACAGTTTGGAAAT 59.779 41.667 0.00 0.00 0.00 2.17
289 290 3.572255 GCATTACAGGGACAGTTTGGAAA 59.428 43.478 0.00 0.00 0.00 3.13
290 291 3.153919 GCATTACAGGGACAGTTTGGAA 58.846 45.455 0.00 0.00 0.00 3.53
291 292 2.554344 GGCATTACAGGGACAGTTTGGA 60.554 50.000 0.00 0.00 0.00 3.53
292 293 1.818674 GGCATTACAGGGACAGTTTGG 59.181 52.381 0.00 0.00 0.00 3.28
293 294 1.818674 GGGCATTACAGGGACAGTTTG 59.181 52.381 0.00 0.00 0.00 2.93
294 295 1.427368 TGGGCATTACAGGGACAGTTT 59.573 47.619 0.00 0.00 0.00 2.66
295 296 1.004745 CTGGGCATTACAGGGACAGTT 59.995 52.381 0.00 0.00 32.38 3.16
296 297 0.620556 CTGGGCATTACAGGGACAGT 59.379 55.000 0.00 0.00 32.38 3.55
297 298 0.620556 ACTGGGCATTACAGGGACAG 59.379 55.000 0.00 0.00 40.23 3.51
298 299 1.004277 GAACTGGGCATTACAGGGACA 59.996 52.381 0.00 0.00 40.23 4.02
299 300 1.751437 GAACTGGGCATTACAGGGAC 58.249 55.000 0.00 0.00 40.23 4.46
300 301 0.251916 CGAACTGGGCATTACAGGGA 59.748 55.000 0.00 0.00 40.23 4.20
301 302 0.251916 TCGAACTGGGCATTACAGGG 59.748 55.000 0.00 0.00 40.23 4.45
302 303 2.107950 TTCGAACTGGGCATTACAGG 57.892 50.000 0.00 0.00 40.23 4.00
303 304 4.414852 CAATTTCGAACTGGGCATTACAG 58.585 43.478 0.00 0.00 41.64 2.74
304 305 3.366883 GCAATTTCGAACTGGGCATTACA 60.367 43.478 0.00 0.00 0.00 2.41
305 306 3.179048 GCAATTTCGAACTGGGCATTAC 58.821 45.455 0.00 0.00 0.00 1.89
306 307 2.822561 TGCAATTTCGAACTGGGCATTA 59.177 40.909 0.00 0.00 0.00 1.90
307 308 1.617850 TGCAATTTCGAACTGGGCATT 59.382 42.857 0.00 0.00 0.00 3.56
308 309 1.067635 GTGCAATTTCGAACTGGGCAT 60.068 47.619 15.01 0.00 31.92 4.40
309 310 0.313672 GTGCAATTTCGAACTGGGCA 59.686 50.000 0.00 4.14 0.00 5.36
310 311 0.313672 TGTGCAATTTCGAACTGGGC 59.686 50.000 0.00 1.25 0.00 5.36
311 312 3.689161 TCTATGTGCAATTTCGAACTGGG 59.311 43.478 0.00 0.00 0.00 4.45
312 313 4.393062 AGTCTATGTGCAATTTCGAACTGG 59.607 41.667 0.00 0.00 0.00 4.00
313 314 5.106948 ACAGTCTATGTGCAATTTCGAACTG 60.107 40.000 0.00 0.00 41.91 3.16
314 315 4.997395 ACAGTCTATGTGCAATTTCGAACT 59.003 37.500 0.00 0.00 41.91 3.01
315 316 5.283060 ACAGTCTATGTGCAATTTCGAAC 57.717 39.130 0.00 0.00 41.91 3.95
316 317 7.119116 ACAATACAGTCTATGTGCAATTTCGAA 59.881 33.333 0.00 0.00 43.80 3.71
317 318 6.593770 ACAATACAGTCTATGTGCAATTTCGA 59.406 34.615 0.00 0.00 43.80 3.71
318 319 6.684131 CACAATACAGTCTATGTGCAATTTCG 59.316 38.462 0.00 0.00 43.80 3.46
319 320 7.751732 TCACAATACAGTCTATGTGCAATTTC 58.248 34.615 7.94 0.00 43.80 2.17
320 321 7.686438 TCACAATACAGTCTATGTGCAATTT 57.314 32.000 7.94 0.00 43.80 1.82
321 322 7.391554 ACTTCACAATACAGTCTATGTGCAATT 59.608 33.333 7.94 0.00 43.80 2.32
322 323 6.881065 ACTTCACAATACAGTCTATGTGCAAT 59.119 34.615 7.94 0.00 43.80 3.56
323 324 6.147656 CACTTCACAATACAGTCTATGTGCAA 59.852 38.462 7.94 4.45 43.80 4.08
324 325 5.639082 CACTTCACAATACAGTCTATGTGCA 59.361 40.000 7.94 0.00 43.80 4.57
325 326 5.063944 CCACTTCACAATACAGTCTATGTGC 59.936 44.000 7.94 0.00 43.80 4.57
326 327 6.091305 CACCACTTCACAATACAGTCTATGTG 59.909 42.308 6.86 6.86 43.80 3.21
327 328 6.166279 CACCACTTCACAATACAGTCTATGT 58.834 40.000 0.00 0.00 46.45 2.29
328 329 5.063944 GCACCACTTCACAATACAGTCTATG 59.936 44.000 0.00 0.00 0.00 2.23
329 330 5.178797 GCACCACTTCACAATACAGTCTAT 58.821 41.667 0.00 0.00 0.00 1.98
330 331 4.562757 GGCACCACTTCACAATACAGTCTA 60.563 45.833 0.00 0.00 0.00 2.59
331 332 3.403038 GCACCACTTCACAATACAGTCT 58.597 45.455 0.00 0.00 0.00 3.24
332 333 2.484264 GGCACCACTTCACAATACAGTC 59.516 50.000 0.00 0.00 0.00 3.51
333 334 2.106511 AGGCACCACTTCACAATACAGT 59.893 45.455 0.00 0.00 0.00 3.55
334 335 2.783135 AGGCACCACTTCACAATACAG 58.217 47.619 0.00 0.00 0.00 2.74
335 336 2.949177 AGGCACCACTTCACAATACA 57.051 45.000 0.00 0.00 0.00 2.29
336 337 3.317993 ACAAAGGCACCACTTCACAATAC 59.682 43.478 0.00 0.00 0.00 1.89
337 338 3.561143 ACAAAGGCACCACTTCACAATA 58.439 40.909 0.00 0.00 0.00 1.90
338 339 2.387757 ACAAAGGCACCACTTCACAAT 58.612 42.857 0.00 0.00 0.00 2.71
339 340 1.846007 ACAAAGGCACCACTTCACAA 58.154 45.000 0.00 0.00 0.00 3.33
340 341 2.685897 GTTACAAAGGCACCACTTCACA 59.314 45.455 0.00 0.00 0.00 3.58
341 342 2.685897 TGTTACAAAGGCACCACTTCAC 59.314 45.455 0.00 0.00 0.00 3.18
342 343 3.006112 TGTTACAAAGGCACCACTTCA 57.994 42.857 0.00 0.00 0.00 3.02
343 344 5.897377 ATATGTTACAAAGGCACCACTTC 57.103 39.130 0.00 0.00 0.00 3.01
344 345 6.266558 TGAAATATGTTACAAAGGCACCACTT 59.733 34.615 0.00 0.00 0.00 3.16
345 346 5.772672 TGAAATATGTTACAAAGGCACCACT 59.227 36.000 0.00 0.00 0.00 4.00
346 347 5.861787 GTGAAATATGTTACAAAGGCACCAC 59.138 40.000 0.00 0.00 0.00 4.16
347 348 5.536538 TGTGAAATATGTTACAAAGGCACCA 59.463 36.000 0.00 0.00 0.00 4.17
348 349 6.019779 TGTGAAATATGTTACAAAGGCACC 57.980 37.500 0.00 0.00 0.00 5.01
349 350 7.485913 CAGATGTGAAATATGTTACAAAGGCAC 59.514 37.037 0.00 0.00 0.00 5.01
350 351 7.537715 CAGATGTGAAATATGTTACAAAGGCA 58.462 34.615 0.00 0.00 0.00 4.75
351 352 6.473455 GCAGATGTGAAATATGTTACAAAGGC 59.527 38.462 0.00 0.00 0.00 4.35
352 353 6.688385 CGCAGATGTGAAATATGTTACAAAGG 59.312 38.462 0.00 0.00 0.00 3.11
353 354 7.243487 ACGCAGATGTGAAATATGTTACAAAG 58.757 34.615 0.00 0.00 0.00 2.77
354 355 7.139896 ACGCAGATGTGAAATATGTTACAAA 57.860 32.000 0.00 0.00 0.00 2.83
355 356 6.183360 GGACGCAGATGTGAAATATGTTACAA 60.183 38.462 0.00 0.00 0.00 2.41
356 357 5.293324 GGACGCAGATGTGAAATATGTTACA 59.707 40.000 0.00 0.00 0.00 2.41
357 358 5.523916 AGGACGCAGATGTGAAATATGTTAC 59.476 40.000 0.00 0.00 0.00 2.50
358 359 5.670485 AGGACGCAGATGTGAAATATGTTA 58.330 37.500 0.00 0.00 0.00 2.41
359 360 4.517285 AGGACGCAGATGTGAAATATGTT 58.483 39.130 0.00 0.00 0.00 2.71
360 361 4.122776 GAGGACGCAGATGTGAAATATGT 58.877 43.478 0.00 0.00 0.00 2.29
361 362 3.496130 GGAGGACGCAGATGTGAAATATG 59.504 47.826 0.00 0.00 0.00 1.78
362 363 3.733337 GGAGGACGCAGATGTGAAATAT 58.267 45.455 0.00 0.00 0.00 1.28
363 364 2.481276 CGGAGGACGCAGATGTGAAATA 60.481 50.000 0.00 0.00 34.82 1.40
364 365 1.740380 CGGAGGACGCAGATGTGAAAT 60.740 52.381 0.00 0.00 34.82 2.17
365 366 0.389817 CGGAGGACGCAGATGTGAAA 60.390 55.000 0.00 0.00 34.82 2.69
366 367 1.215382 CGGAGGACGCAGATGTGAA 59.785 57.895 0.00 0.00 34.82 3.18
367 368 2.885113 CGGAGGACGCAGATGTGA 59.115 61.111 0.00 0.00 34.82 3.58
376 377 7.201574 TGATGTTATCAAATTAAACGGAGGACG 60.202 37.037 0.00 0.00 42.02 4.79
377 378 7.981142 TGATGTTATCAAATTAAACGGAGGAC 58.019 34.615 0.00 0.00 36.11 3.85
378 379 8.620416 CATGATGTTATCAAATTAAACGGAGGA 58.380 33.333 0.00 0.00 43.50 3.71
379 380 7.862372 CCATGATGTTATCAAATTAAACGGAGG 59.138 37.037 0.00 0.00 43.50 4.30
380 381 8.620416 TCCATGATGTTATCAAATTAAACGGAG 58.380 33.333 0.00 0.00 43.50 4.63
381 382 8.512966 TCCATGATGTTATCAAATTAAACGGA 57.487 30.769 0.00 0.00 43.50 4.69
382 383 9.748708 AATCCATGATGTTATCAAATTAAACGG 57.251 29.630 0.00 0.00 43.50 4.44
386 387 8.649591 CCCCAATCCATGATGTTATCAAATTAA 58.350 33.333 0.00 0.00 43.50 1.40
387 388 8.009513 TCCCCAATCCATGATGTTATCAAATTA 58.990 33.333 0.00 0.00 43.50 1.40
388 389 6.845446 TCCCCAATCCATGATGTTATCAAATT 59.155 34.615 0.00 0.00 43.50 1.82
389 390 6.383763 TCCCCAATCCATGATGTTATCAAAT 58.616 36.000 0.00 0.00 43.50 2.32
390 391 5.775268 TCCCCAATCCATGATGTTATCAAA 58.225 37.500 0.00 0.00 43.50 2.69
391 392 5.400552 TCCCCAATCCATGATGTTATCAA 57.599 39.130 0.00 0.00 43.50 2.57
392 393 5.162958 ACATCCCCAATCCATGATGTTATCA 60.163 40.000 0.00 0.00 43.87 2.15
393 394 5.327732 ACATCCCCAATCCATGATGTTATC 58.672 41.667 0.00 0.00 43.87 1.75
394 395 5.343833 ACATCCCCAATCCATGATGTTAT 57.656 39.130 0.00 0.00 43.87 1.89
395 396 4.812403 ACATCCCCAATCCATGATGTTA 57.188 40.909 0.00 0.00 43.87 2.41
396 397 3.693526 ACATCCCCAATCCATGATGTT 57.306 42.857 0.00 0.00 43.87 2.71
398 399 5.326900 TCATAACATCCCCAATCCATGATG 58.673 41.667 0.00 0.00 40.28 3.07
399 400 5.603915 TCATAACATCCCCAATCCATGAT 57.396 39.130 0.00 0.00 0.00 2.45
400 401 5.162958 ACATCATAACATCCCCAATCCATGA 60.163 40.000 0.00 0.00 0.00 3.07
401 402 5.081728 ACATCATAACATCCCCAATCCATG 58.918 41.667 0.00 0.00 0.00 3.66
402 403 5.075483 AGACATCATAACATCCCCAATCCAT 59.925 40.000 0.00 0.00 0.00 3.41
403 404 4.416513 AGACATCATAACATCCCCAATCCA 59.583 41.667 0.00 0.00 0.00 3.41
404 405 4.990526 AGACATCATAACATCCCCAATCC 58.009 43.478 0.00 0.00 0.00 3.01
405 406 5.940470 GGTAGACATCATAACATCCCCAATC 59.060 44.000 0.00 0.00 0.00 2.67
406 407 5.612688 AGGTAGACATCATAACATCCCCAAT 59.387 40.000 0.00 0.00 0.00 3.16
407 408 4.975147 AGGTAGACATCATAACATCCCCAA 59.025 41.667 0.00 0.00 0.00 4.12
408 409 4.347876 CAGGTAGACATCATAACATCCCCA 59.652 45.833 0.00 0.00 0.00 4.96
409 410 4.348168 ACAGGTAGACATCATAACATCCCC 59.652 45.833 0.00 0.00 0.00 4.81
410 411 5.552870 ACAGGTAGACATCATAACATCCC 57.447 43.478 0.00 0.00 0.00 3.85
411 412 6.582636 TGAACAGGTAGACATCATAACATCC 58.417 40.000 0.00 0.00 0.00 3.51
412 413 9.416794 CTATGAACAGGTAGACATCATAACATC 57.583 37.037 0.00 0.00 33.83 3.06
413 414 7.875041 GCTATGAACAGGTAGACATCATAACAT 59.125 37.037 0.00 0.00 33.83 2.71
414 415 7.069950 AGCTATGAACAGGTAGACATCATAACA 59.930 37.037 0.00 0.00 33.83 2.41
415 416 7.383572 CAGCTATGAACAGGTAGACATCATAAC 59.616 40.741 0.00 0.00 33.83 1.89
416 417 7.069950 ACAGCTATGAACAGGTAGACATCATAA 59.930 37.037 0.00 0.00 33.83 1.90
417 418 6.551227 ACAGCTATGAACAGGTAGACATCATA 59.449 38.462 0.00 0.00 33.17 2.15
418 419 5.365025 ACAGCTATGAACAGGTAGACATCAT 59.635 40.000 0.00 0.00 35.15 2.45
419 420 4.711846 ACAGCTATGAACAGGTAGACATCA 59.288 41.667 0.00 0.00 0.00 3.07
420 421 5.269505 ACAGCTATGAACAGGTAGACATC 57.730 43.478 0.00 0.00 0.00 3.06
421 422 6.985653 ATACAGCTATGAACAGGTAGACAT 57.014 37.500 0.00 0.00 0.00 3.06
422 423 6.791867 AATACAGCTATGAACAGGTAGACA 57.208 37.500 0.00 0.00 0.00 3.41
423 424 8.494016 AAAAATACAGCTATGAACAGGTAGAC 57.506 34.615 0.00 0.00 0.00 2.59
455 456 9.744468 GCAGGTTTTCATAAGTAAGAAAAAGAA 57.256 29.630 0.00 0.00 43.09 2.52
456 457 9.131791 AGCAGGTTTTCATAAGTAAGAAAAAGA 57.868 29.630 0.00 0.00 43.09 2.52
457 458 9.185192 CAGCAGGTTTTCATAAGTAAGAAAAAG 57.815 33.333 0.00 0.00 43.09 2.27
458 459 8.141268 CCAGCAGGTTTTCATAAGTAAGAAAAA 58.859 33.333 0.00 0.00 43.09 1.94
459 460 7.504238 TCCAGCAGGTTTTCATAAGTAAGAAAA 59.496 33.333 0.00 0.00 40.34 2.29
460 461 7.001674 TCCAGCAGGTTTTCATAAGTAAGAAA 58.998 34.615 0.00 0.00 35.89 2.52
461 462 6.539173 TCCAGCAGGTTTTCATAAGTAAGAA 58.461 36.000 0.00 0.00 35.89 2.52
462 463 6.121776 TCCAGCAGGTTTTCATAAGTAAGA 57.878 37.500 0.00 0.00 35.89 2.10
463 464 5.940470 ACTCCAGCAGGTTTTCATAAGTAAG 59.060 40.000 0.00 0.00 35.89 2.34
464 465 5.876357 ACTCCAGCAGGTTTTCATAAGTAA 58.124 37.500 0.00 0.00 35.89 2.24
465 466 5.012664 TGACTCCAGCAGGTTTTCATAAGTA 59.987 40.000 0.00 0.00 35.89 2.24
466 467 4.202461 TGACTCCAGCAGGTTTTCATAAGT 60.202 41.667 0.00 0.00 35.89 2.24
467 468 4.326826 TGACTCCAGCAGGTTTTCATAAG 58.673 43.478 0.00 0.00 35.89 1.73
468 469 4.365514 TGACTCCAGCAGGTTTTCATAA 57.634 40.909 0.00 0.00 35.89 1.90
469 470 4.574674 ATGACTCCAGCAGGTTTTCATA 57.425 40.909 0.00 0.00 35.89 2.15
470 471 2.957402 TGACTCCAGCAGGTTTTCAT 57.043 45.000 0.00 0.00 35.89 2.57
471 472 2.957402 ATGACTCCAGCAGGTTTTCA 57.043 45.000 0.00 0.00 35.89 2.69
472 473 4.082733 GGTTAATGACTCCAGCAGGTTTTC 60.083 45.833 0.00 0.00 35.89 2.29
473 474 3.826729 GGTTAATGACTCCAGCAGGTTTT 59.173 43.478 0.00 0.00 35.89 2.43
474 475 3.421844 GGTTAATGACTCCAGCAGGTTT 58.578 45.455 0.00 0.00 35.89 3.27
475 476 2.290960 GGGTTAATGACTCCAGCAGGTT 60.291 50.000 0.00 0.00 35.89 3.50
476 477 1.282157 GGGTTAATGACTCCAGCAGGT 59.718 52.381 0.00 0.00 35.89 4.00
477 478 2.044123 GGGTTAATGACTCCAGCAGG 57.956 55.000 0.00 0.00 0.00 4.85
484 485 3.713826 TTGGTGAGGGGTTAATGACTC 57.286 47.619 0.00 0.00 0.00 3.36
485 486 3.499745 GGTTTGGTGAGGGGTTAATGACT 60.500 47.826 0.00 0.00 0.00 3.41
486 487 2.823747 GGTTTGGTGAGGGGTTAATGAC 59.176 50.000 0.00 0.00 0.00 3.06
487 488 2.719705 AGGTTTGGTGAGGGGTTAATGA 59.280 45.455 0.00 0.00 0.00 2.57
488 489 2.825532 CAGGTTTGGTGAGGGGTTAATG 59.174 50.000 0.00 0.00 0.00 1.90
489 490 2.719705 TCAGGTTTGGTGAGGGGTTAAT 59.280 45.455 0.00 0.00 0.00 1.40
490 491 2.136863 TCAGGTTTGGTGAGGGGTTAA 58.863 47.619 0.00 0.00 0.00 2.01
491 492 1.822425 TCAGGTTTGGTGAGGGGTTA 58.178 50.000 0.00 0.00 0.00 2.85
492 493 0.930726 TTCAGGTTTGGTGAGGGGTT 59.069 50.000 0.00 0.00 0.00 4.11
493 494 1.158007 ATTCAGGTTTGGTGAGGGGT 58.842 50.000 0.00 0.00 0.00 4.95
494 495 1.895131 CAATTCAGGTTTGGTGAGGGG 59.105 52.381 0.00 0.00 0.00 4.79
495 496 2.875296 TCAATTCAGGTTTGGTGAGGG 58.125 47.619 0.00 0.00 0.00 4.30
496 497 3.367703 GCATCAATTCAGGTTTGGTGAGG 60.368 47.826 1.07 0.00 37.37 3.86
497 498 3.508793 AGCATCAATTCAGGTTTGGTGAG 59.491 43.478 1.07 0.00 37.37 3.51
498 499 3.256383 CAGCATCAATTCAGGTTTGGTGA 59.744 43.478 1.07 0.00 37.37 4.02
499 500 3.581755 CAGCATCAATTCAGGTTTGGTG 58.418 45.455 0.00 0.00 38.07 4.17
500 501 2.028748 GCAGCATCAATTCAGGTTTGGT 60.029 45.455 0.00 0.00 0.00 3.67
501 502 2.613691 GCAGCATCAATTCAGGTTTGG 58.386 47.619 0.00 0.00 0.00 3.28
502 503 2.613691 GGCAGCATCAATTCAGGTTTG 58.386 47.619 0.00 0.00 0.00 2.93
503 504 1.551883 GGGCAGCATCAATTCAGGTTT 59.448 47.619 0.00 0.00 0.00 3.27
504 505 1.188863 GGGCAGCATCAATTCAGGTT 58.811 50.000 0.00 0.00 0.00 3.50
505 506 0.040058 TGGGCAGCATCAATTCAGGT 59.960 50.000 0.00 0.00 0.00 4.00
506 507 0.744874 CTGGGCAGCATCAATTCAGG 59.255 55.000 0.00 0.00 0.00 3.86
507 508 0.744874 CCTGGGCAGCATCAATTCAG 59.255 55.000 0.00 0.00 0.00 3.02
508 509 1.324740 GCCTGGGCAGCATCAATTCA 61.325 55.000 6.75 0.00 41.49 2.57
509 510 1.440476 GCCTGGGCAGCATCAATTC 59.560 57.895 6.75 0.00 41.49 2.17
510 511 2.062177 GGCCTGGGCAGCATCAATT 61.062 57.895 16.34 0.00 44.11 2.32
511 512 2.443390 GGCCTGGGCAGCATCAAT 60.443 61.111 16.34 0.00 44.11 2.57
512 513 4.764771 GGGCCTGGGCAGCATCAA 62.765 66.667 22.68 0.00 44.11 2.57
514 515 4.764771 TTGGGCCTGGGCAGCATC 62.765 66.667 22.68 4.51 44.11 3.91
515 516 3.629035 AATTGGGCCTGGGCAGCAT 62.629 57.895 22.68 7.38 44.11 3.79
516 517 4.319949 AATTGGGCCTGGGCAGCA 62.320 61.111 22.68 8.87 44.11 4.41
517 518 3.464494 GAATTGGGCCTGGGCAGC 61.464 66.667 22.68 6.06 44.11 5.25
518 519 2.761213 GGAATTGGGCCTGGGCAG 60.761 66.667 22.68 0.00 44.11 4.85
519 520 4.757355 CGGAATTGGGCCTGGGCA 62.757 66.667 22.68 2.20 44.11 5.36
521 522 4.757355 TGCGGAATTGGGCCTGGG 62.757 66.667 4.53 0.00 0.00 4.45
522 523 2.442643 ATGCGGAATTGGGCCTGG 60.443 61.111 4.53 0.00 0.00 4.45
523 524 0.751277 TACATGCGGAATTGGGCCTG 60.751 55.000 4.53 0.00 0.00 4.85
524 525 0.033601 TTACATGCGGAATTGGGCCT 60.034 50.000 4.53 0.00 0.00 5.19
525 526 0.820871 TTTACATGCGGAATTGGGCC 59.179 50.000 0.00 0.00 0.00 5.80
526 527 2.100584 TCATTTACATGCGGAATTGGGC 59.899 45.455 0.00 0.00 0.00 5.36
527 528 3.381272 ACTCATTTACATGCGGAATTGGG 59.619 43.478 0.00 0.00 0.00 4.12
528 529 4.637483 ACTCATTTACATGCGGAATTGG 57.363 40.909 0.00 0.00 0.00 3.16
529 530 6.324819 AGAAACTCATTTACATGCGGAATTG 58.675 36.000 0.00 0.00 0.00 2.32
530 531 6.515272 AGAAACTCATTTACATGCGGAATT 57.485 33.333 0.00 0.00 0.00 2.17
531 532 6.515272 AAGAAACTCATTTACATGCGGAAT 57.485 33.333 0.00 0.00 0.00 3.01
532 533 5.957842 AAGAAACTCATTTACATGCGGAA 57.042 34.783 0.00 0.00 0.00 4.30
533 534 5.957842 AAAGAAACTCATTTACATGCGGA 57.042 34.783 0.00 0.00 0.00 5.54
534 535 6.381801 AGAAAAGAAACTCATTTACATGCGG 58.618 36.000 0.00 0.00 0.00 5.69
535 536 7.858052 AAGAAAAGAAACTCATTTACATGCG 57.142 32.000 0.00 0.00 0.00 4.73
562 563 9.965902 AAATTGGATATCAAGTGAAGTAAGAGT 57.034 29.630 4.83 0.00 38.95 3.24
566 567 9.739276 ACAGAAATTGGATATCAAGTGAAGTAA 57.261 29.630 4.83 0.00 38.95 2.24
568 569 9.167311 GTACAGAAATTGGATATCAAGTGAAGT 57.833 33.333 4.83 0.00 38.95 3.01
569 570 9.388506 AGTACAGAAATTGGATATCAAGTGAAG 57.611 33.333 4.83 0.00 38.95 3.02
570 571 9.739276 AAGTACAGAAATTGGATATCAAGTGAA 57.261 29.630 4.83 0.00 38.95 3.18
571 572 9.383519 GAAGTACAGAAATTGGATATCAAGTGA 57.616 33.333 4.83 0.00 38.95 3.41
572 573 9.388506 AGAAGTACAGAAATTGGATATCAAGTG 57.611 33.333 4.83 0.00 38.95 3.16
573 574 9.388506 CAGAAGTACAGAAATTGGATATCAAGT 57.611 33.333 4.83 0.00 38.95 3.16
574 575 8.341173 GCAGAAGTACAGAAATTGGATATCAAG 58.659 37.037 4.83 0.00 38.95 3.02
575 576 8.049117 AGCAGAAGTACAGAAATTGGATATCAA 58.951 33.333 4.83 0.00 40.01 2.57
576 577 7.568349 AGCAGAAGTACAGAAATTGGATATCA 58.432 34.615 4.83 0.00 0.00 2.15
577 578 8.443953 AAGCAGAAGTACAGAAATTGGATATC 57.556 34.615 0.00 0.00 0.00 1.63
601 602 6.290294 AGCTCGGGTACAATTAAGAACTAA 57.710 37.500 0.00 0.00 0.00 2.24
618 619 3.748048 TCATTCTCAACAGAAAAGCTCGG 59.252 43.478 0.00 0.00 42.14 4.63
619 620 4.997905 TCATTCTCAACAGAAAAGCTCG 57.002 40.909 0.00 0.00 42.14 5.03
637 638 9.995003 GAGTCCAGAGAACTTATCATAATTCAT 57.005 33.333 0.00 0.00 0.00 2.57
677 678 7.932643 CGAATTCGGTAGACAAAACATTTAG 57.067 36.000 20.16 0.00 35.37 1.85
694 695 7.572759 ACACTACAATATAATTGCCGAATTCG 58.427 34.615 20.92 20.92 33.63 3.34
792 798 0.179020 CCAAACCACTCAGACTGGCA 60.179 55.000 1.81 0.00 31.13 4.92
797 803 0.251341 ATGGCCCAAACCACTCAGAC 60.251 55.000 0.00 0.00 44.17 3.51
819 825 7.387948 CCAGACACAAGCTAGTACTAAATTTGT 59.612 37.037 15.33 15.33 0.00 2.83
980 988 6.064060 ACCATGAAGAATCAACAGAAAGTGA 58.936 36.000 0.00 0.00 39.49 3.41
1041 2543 2.350804 CAGCATGTAGTAGCAGCAAGTG 59.649 50.000 0.00 0.00 0.00 3.16
1069 2571 7.849804 TCACCATAAGCTTCAAGAAATAGAC 57.150 36.000 0.00 0.00 0.00 2.59
1076 2578 9.466497 AGATAAAAATCACCATAAGCTTCAAGA 57.534 29.630 0.00 0.00 0.00 3.02
1088 2590 5.252969 GCATCTGCAGATAAAAATCACCA 57.747 39.130 28.27 0.00 41.59 4.17
1160 2676 1.201429 GCCCAGAAGAGTTCCTCCCA 61.201 60.000 0.00 0.00 0.00 4.37
1220 2736 5.514834 CCTTTTGAGGTCAATGTCCCTAAGA 60.515 44.000 0.00 0.00 35.55 2.10
1427 2943 1.485066 GAGGGTTTGGAGGAATCGCTA 59.515 52.381 0.00 0.00 29.15 4.26
1433 2949 0.765135 TCGTGGAGGGTTTGGAGGAA 60.765 55.000 0.00 0.00 0.00 3.36
1469 2985 0.251922 AATCAGCATTGTGGGCAGGT 60.252 50.000 0.00 0.00 0.00 4.00
1555 3080 2.435938 GAACCGCCGCATCCTTCA 60.436 61.111 0.00 0.00 0.00 3.02
1556 3081 2.306255 TAGGAACCGCCGCATCCTTC 62.306 60.000 13.10 0.00 40.70 3.46
1655 3180 0.701147 TGTGCACCCATGTTCCCATA 59.299 50.000 15.69 0.00 0.00 2.74
2169 3697 3.000222 GGAAACTGCTCGCAAACAAAAAG 60.000 43.478 0.00 0.00 0.00 2.27
2330 3874 2.229792 CCAGCTTGCTAAACCAGACAA 58.770 47.619 0.00 0.00 0.00 3.18
2340 3886 0.840288 TGTTCCCTCCCAGCTTGCTA 60.840 55.000 0.00 0.00 0.00 3.49
2346 3892 1.923356 TCATTTTGTTCCCTCCCAGC 58.077 50.000 0.00 0.00 0.00 4.85
2368 3914 6.761242 AGAAGCATGTCTAAATATACGCACAA 59.239 34.615 0.00 0.00 0.00 3.33
2389 3944 1.337260 ACGGAACAGCAGCTACAGAAG 60.337 52.381 0.00 0.00 0.00 2.85
2427 3983 9.452065 AATAAACTATATATATGCAGCTCGTCG 57.548 33.333 5.44 0.00 0.00 5.12
2557 4128 3.643792 AGTCCAGAGGCATTGTAGTATCC 59.356 47.826 0.00 0.00 0.00 2.59
2632 4210 5.183713 CCATAATTCTGCAAAACTGGACTGA 59.816 40.000 0.00 0.00 0.00 3.41
2703 4285 7.365741 GCAGCAGCTATACAAATCATGTAAAT 58.634 34.615 0.00 0.00 41.91 1.40
2731 4322 8.660373 CAGGTACAGAAACTAGAAAGCAAATAG 58.340 37.037 0.00 0.00 0.00 1.73
2754 4348 2.743636 TCTAAAGACGGAACAGCAGG 57.256 50.000 0.00 0.00 0.00 4.85
2770 4364 2.754552 GCTCAACCCATGCATGTTTCTA 59.245 45.455 24.58 6.98 0.00 2.10
2890 4495 6.857964 GGACATATGAATGGCAAGTTTAATCG 59.142 38.462 10.38 0.00 43.64 3.34
2895 4500 6.426587 ACTAGGACATATGAATGGCAAGTTT 58.573 36.000 10.38 0.00 43.64 2.66
2905 4510 6.875726 GCATTGCATCTACTAGGACATATGAA 59.124 38.462 10.38 0.00 0.00 2.57
2921 4526 2.304092 TCATTCCAGAGGCATTGCATC 58.696 47.619 15.15 15.15 39.81 3.91
2922 4527 2.447408 TCATTCCAGAGGCATTGCAT 57.553 45.000 11.39 2.39 0.00 3.96
2923 4528 2.219080 TTCATTCCAGAGGCATTGCA 57.781 45.000 11.39 0.00 0.00 4.08
2924 4529 2.691526 TCATTCATTCCAGAGGCATTGC 59.308 45.455 0.00 0.00 0.00 3.56
2944 4556 7.750903 GTCAGTTATTAGTGCAAAACTGGATTC 59.249 37.037 18.86 9.59 45.62 2.52
2972 4620 5.071519 CACCAGGATTCCTAAGACATCATCT 59.928 44.000 4.51 0.00 40.46 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.