Multiple sequence alignment - TraesCS7A01G503600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G503600 chr7A 100.000 2045 0 0 709 2753 692314053 692312009 0.000000e+00 3777
1 TraesCS7A01G503600 chr7A 100.000 473 0 0 1 473 692314761 692314289 0.000000e+00 874
2 TraesCS7A01G503600 chr1D 90.769 520 23 11 1435 1940 5452605 5453113 0.000000e+00 671
3 TraesCS7A01G503600 chr1D 84.091 440 52 5 1007 1436 5452086 5452517 2.550000e-110 409
4 TraesCS7A01G503600 chr1D 79.245 477 45 21 5 473 5451177 5451607 1.610000e-72 283
5 TraesCS7A01G503600 chr1D 87.778 90 6 3 2654 2738 5453421 5453510 1.740000e-17 100
6 TraesCS7A01G503600 chr1A 87.879 561 37 12 1438 1975 6765565 6765013 5.000000e-177 630
7 TraesCS7A01G503600 chr1A 86.761 423 23 16 1437 1833 6766673 6766258 9.050000e-120 440
8 TraesCS7A01G503600 chr1A 91.429 245 19 2 1936 2179 579953981 579954224 4.390000e-88 335
9 TraesCS7A01G503600 chr1A 79.024 410 59 15 2179 2568 6765052 6764650 3.520000e-64 255
10 TraesCS7A01G503600 chr1A 83.401 247 19 7 727 970 6767509 6767282 2.780000e-50 209
11 TraesCS7A01G503600 chr1A 84.444 135 15 4 1843 1975 6765821 6765691 8.000000e-26 128
12 TraesCS7A01G503600 chr1A 89.691 97 4 3 2649 2740 6764554 6764459 4.820000e-23 119
13 TraesCS7A01G503600 chr1B 88.803 518 31 12 1438 1940 8181422 8181927 6.520000e-171 610
14 TraesCS7A01G503600 chr1B 86.667 540 30 17 1438 1940 639448228 639448762 6.660000e-156 560
15 TraesCS7A01G503600 chr1B 88.399 431 38 5 1017 1438 639447708 639448135 2.450000e-140 508
16 TraesCS7A01G503600 chr1B 89.770 391 37 3 1010 1398 644621674 644621285 5.290000e-137 497
17 TraesCS7A01G503600 chr1B 84.753 446 54 3 1007 1438 8180889 8181334 4.210000e-118 435
18 TraesCS7A01G503600 chr1B 83.292 407 32 11 54 460 41001599 41001969 2.630000e-90 342
19 TraesCS7A01G503600 chr1B 86.129 310 23 11 1642 1940 17836634 17836334 1.590000e-82 316
20 TraesCS7A01G503600 chr1B 81.220 410 41 14 54 463 644622160 644621787 5.760000e-77 298
21 TraesCS7A01G503600 chr1B 82.123 358 40 17 2178 2521 17836335 17835988 4.490000e-73 285
22 TraesCS7A01G503600 chr1B 88.584 219 19 4 1437 1653 17863006 17862792 7.560000e-66 261
23 TraesCS7A01G503600 chr1B 83.391 289 32 11 710 993 41002022 41002299 1.270000e-63 254
24 TraesCS7A01G503600 chr1B 75.569 483 80 18 18 465 639446767 639447246 1.290000e-48 204
25 TraesCS7A01G503600 chr1B 85.417 192 16 7 2228 2416 639448865 639449047 3.620000e-44 189
26 TraesCS7A01G503600 chr1B 80.972 247 31 7 2182 2416 8181949 8182191 6.060000e-42 182
27 TraesCS7A01G503600 chr1B 83.673 147 11 1 47 193 17872580 17872447 2.880000e-25 126
28 TraesCS7A01G503600 chr1B 84.375 128 8 7 1437 1557 41002960 41003082 6.230000e-22 115
29 TraesCS7A01G503600 chrUn 91.117 394 31 4 1007 1398 187023872 187024263 5.220000e-147 531
30 TraesCS7A01G503600 chrUn 83.538 407 28 19 54 460 187023038 187023405 7.300000e-91 344
31 TraesCS7A01G503600 chrUn 83.448 290 32 11 709 993 187023457 187023735 3.520000e-64 255
32 TraesCS7A01G503600 chr5D 91.117 394 31 4 1007 1398 523437199 523437590 5.220000e-147 531
33 TraesCS7A01G503600 chr5D 83.538 407 28 19 54 460 523436365 523436732 7.300000e-91 344
34 TraesCS7A01G503600 chr5D 91.093 247 19 3 1936 2181 152392117 152392361 5.680000e-87 331
35 TraesCS7A01G503600 chr5D 83.448 290 32 11 709 993 523436784 523437062 3.520000e-64 255
36 TraesCS7A01G503600 chr7D 90.863 394 33 3 1007 1398 614264701 614265093 2.430000e-145 525
37 TraesCS7A01G503600 chr7D 84.521 407 27 9 54 460 614263864 614264234 1.200000e-98 370
38 TraesCS7A01G503600 chr7D 91.498 247 18 3 1936 2181 99142587 99142831 1.220000e-88 337
39 TraesCS7A01G503600 chr7D 83.448 290 32 11 709 993 614264286 614264564 3.520000e-64 255
40 TraesCS7A01G503600 chr7D 85.024 207 28 1 1546 1749 433013784 433013990 9.990000e-50 207
41 TraesCS7A01G503600 chr7D 87.200 125 8 4 1437 1557 614265230 614265350 4.780000e-28 135
42 TraesCS7A01G503600 chr4D 90.863 394 33 3 1007 1398 408289449 408289841 2.430000e-145 525
43 TraesCS7A01G503600 chr4D 83.103 290 33 11 709 993 408289034 408289312 1.640000e-62 250
44 TraesCS7A01G503600 chr4D 83.333 282 23 7 179 460 408288725 408288982 3.540000e-59 239
45 TraesCS7A01G503600 chr5B 88.101 395 42 5 1007 1398 548908761 548908369 5.370000e-127 464
46 TraesCS7A01G503600 chr5B 82.195 410 37 12 54 463 548909598 548909225 1.230000e-83 320
47 TraesCS7A01G503600 chr5B 82.069 290 36 12 709 993 548909176 548908898 1.650000e-57 233
48 TraesCS7A01G503600 chr5B 88.000 125 7 4 1437 1557 548908234 548908114 1.030000e-29 141
49 TraesCS7A01G503600 chr2A 82.968 411 33 14 54 463 57439108 57438734 1.220000e-88 337
50 TraesCS7A01G503600 chr2A 91.498 247 18 3 1936 2181 439752227 439751983 1.220000e-88 337
51 TraesCS7A01G503600 chr2A 84.507 355 30 7 54 408 64991654 64991983 7.350000e-86 327
52 TraesCS7A01G503600 chr2A 81.724 290 37 11 709 993 64992076 64992354 7.670000e-56 228
53 TraesCS7A01G503600 chr2D 91.463 246 18 3 1936 2180 521074219 521074462 4.390000e-88 335
54 TraesCS7A01G503600 chr6A 84.722 360 26 9 54 411 615647871 615647539 1.580000e-87 333
55 TraesCS7A01G503600 chr6A 91.093 247 19 3 1936 2181 235369969 235370213 5.680000e-87 331
56 TraesCS7A01G503600 chr6A 91.322 242 19 2 1939 2179 351609157 351609397 2.040000e-86 329
57 TraesCS7A01G503600 chr5A 91.393 244 19 2 1937 2179 77362909 77362667 1.580000e-87 333
58 TraesCS7A01G503600 chr5A 81.863 408 37 15 54 460 399587360 399587731 2.660000e-80 309
59 TraesCS7A01G503600 chr2B 91.358 243 17 3 1938 2179 171462881 171463120 2.040000e-86 329
60 TraesCS7A01G503600 chr7B 84.977 213 26 5 1546 1752 449553271 449553059 7.720000e-51 211


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G503600 chr7A 692312009 692314761 2752 True 2325.500000 3777 100.000000 1 2753 2 chr7A.!!$R1 2752
1 TraesCS7A01G503600 chr1D 5451177 5453510 2333 False 365.750000 671 85.470750 5 2738 4 chr1D.!!$F1 2733
2 TraesCS7A01G503600 chr1A 6764459 6767509 3050 True 296.833333 630 85.200000 727 2740 6 chr1A.!!$R1 2013
3 TraesCS7A01G503600 chr1B 8180889 8182191 1302 False 409.000000 610 84.842667 1007 2416 3 chr1B.!!$F1 1409
4 TraesCS7A01G503600 chr1B 644621285 644622160 875 True 397.500000 497 85.495000 54 1398 2 chr1B.!!$R4 1344
5 TraesCS7A01G503600 chr1B 639446767 639449047 2280 False 365.250000 560 84.013000 18 2416 4 chr1B.!!$F3 2398
6 TraesCS7A01G503600 chr1B 17835988 17836634 646 True 300.500000 316 84.126000 1642 2521 2 chr1B.!!$R3 879
7 TraesCS7A01G503600 chr1B 41001599 41003082 1483 False 237.000000 342 83.686000 54 1557 3 chr1B.!!$F2 1503
8 TraesCS7A01G503600 chrUn 187023038 187024263 1225 False 376.666667 531 86.034333 54 1398 3 chrUn.!!$F1 1344
9 TraesCS7A01G503600 chr5D 523436365 523437590 1225 False 376.666667 531 86.034333 54 1398 3 chr5D.!!$F2 1344
10 TraesCS7A01G503600 chr7D 614263864 614265350 1486 False 321.250000 525 86.508000 54 1557 4 chr7D.!!$F3 1503
11 TraesCS7A01G503600 chr4D 408288725 408289841 1116 False 338.000000 525 85.766333 179 1398 3 chr4D.!!$F1 1219
12 TraesCS7A01G503600 chr5B 548908114 548909598 1484 True 289.500000 464 85.091250 54 1557 4 chr5B.!!$R1 1503
13 TraesCS7A01G503600 chr2A 64991654 64992354 700 False 277.500000 327 83.115500 54 993 2 chr2A.!!$F1 939

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
236 275 0.030369 CCCGTGTATGGCGTAGAGAC 59.97 60.0 0.0 0.0 0.0 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1870 3370 0.250234 TCAACTCCAAGCTCCATCCG 59.75 55.0 0.0 0.0 0.0 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
95 97 4.753662 AGGTACGCCCTCTCCGCA 62.754 66.667 0.00 0.00 40.71 5.69
96 98 3.766691 GGTACGCCCTCTCCGCAA 61.767 66.667 0.00 0.00 0.00 4.85
115 117 2.737881 CGCCCCGATTCACCCCTTA 61.738 63.158 0.00 0.00 0.00 2.69
125 127 2.057137 TCACCCCTTATTGCATCAGC 57.943 50.000 0.00 0.00 42.57 4.26
177 193 3.984732 AAGGCAGAACCAGGGGCC 61.985 66.667 0.00 0.00 46.77 5.80
232 271 0.386858 CGATCCCGTGTATGGCGTAG 60.387 60.000 0.00 0.00 0.00 3.51
233 272 0.956633 GATCCCGTGTATGGCGTAGA 59.043 55.000 0.00 0.00 0.00 2.59
234 273 0.959553 ATCCCGTGTATGGCGTAGAG 59.040 55.000 0.00 0.00 0.00 2.43
235 274 0.107066 TCCCGTGTATGGCGTAGAGA 60.107 55.000 0.00 0.00 0.00 3.10
236 275 0.030369 CCCGTGTATGGCGTAGAGAC 59.970 60.000 0.00 0.00 0.00 3.36
237 276 0.030369 CCGTGTATGGCGTAGAGACC 59.970 60.000 0.00 0.00 0.00 3.85
240 279 2.579873 GTGTATGGCGTAGAGACCCTA 58.420 52.381 0.00 0.00 0.00 3.53
262 315 0.253327 GAAATCCCTCTGCCCGTCTT 59.747 55.000 0.00 0.00 0.00 3.01
293 346 2.590575 CCACGGTTGGTCGCTTGT 60.591 61.111 0.00 0.00 38.23 3.16
329 382 3.950395 GGGGGATGAAGATTTCAGTTGAG 59.050 47.826 0.00 0.00 43.98 3.02
445 507 1.149401 GTCCATAGCAGGGAAGGGC 59.851 63.158 0.00 0.00 35.88 5.19
460 527 3.119602 GGAAGGGCGAAGTAAATTGAACC 60.120 47.826 0.00 0.00 0.00 3.62
858 959 8.950208 AATCTTGTAAGCTTTGGATAGTACTC 57.050 34.615 3.20 0.00 0.00 2.59
859 960 7.719871 TCTTGTAAGCTTTGGATAGTACTCT 57.280 36.000 3.20 0.00 0.00 3.24
864 966 8.978472 TGTAAGCTTTGGATAGTACTCTACAAT 58.022 33.333 3.20 0.00 0.00 2.71
957 1059 3.378112 TCTTTCAAACACTTGTGCAGAGG 59.622 43.478 0.10 0.00 33.94 3.69
964 1066 2.289694 ACACTTGTGCAGAGGGATGTAC 60.290 50.000 6.29 0.00 36.46 2.90
994 1103 5.843673 TTCCTTTTCAAGTTACATGTGCA 57.156 34.783 9.11 0.00 0.00 4.57
996 1105 5.129634 TCCTTTTCAAGTTACATGTGCAGA 58.870 37.500 9.11 0.00 0.00 4.26
997 1106 5.239306 TCCTTTTCAAGTTACATGTGCAGAG 59.761 40.000 9.11 0.00 0.00 3.35
998 1107 4.488126 TTTCAAGTTACATGTGCAGAGC 57.512 40.909 9.11 0.00 0.00 4.09
999 1108 2.068519 TCAAGTTACATGTGCAGAGCG 58.931 47.619 9.11 0.00 0.00 5.03
1000 1109 2.068519 CAAGTTACATGTGCAGAGCGA 58.931 47.619 9.11 0.00 0.00 4.93
1001 1110 2.674852 CAAGTTACATGTGCAGAGCGAT 59.325 45.455 9.11 0.00 0.00 4.58
1002 1111 2.274437 AGTTACATGTGCAGAGCGATG 58.726 47.619 9.11 0.00 0.00 3.84
1003 1112 2.002586 GTTACATGTGCAGAGCGATGT 58.997 47.619 9.11 10.17 37.74 3.06
1004 1113 3.119137 AGTTACATGTGCAGAGCGATGTA 60.119 43.478 9.11 8.66 36.27 2.29
1005 1114 1.645034 ACATGTGCAGAGCGATGTAC 58.355 50.000 0.00 5.67 34.14 2.90
1041 1278 2.922335 GCGTCTTCTTGTTTCCAATGGC 60.922 50.000 0.00 0.00 0.00 4.40
1045 1282 4.746611 GTCTTCTTGTTTCCAATGGCTTTG 59.253 41.667 6.16 6.16 34.93 2.77
1067 1304 1.072015 CCTGAATGGATCTCCCTCTGC 59.928 57.143 0.00 0.00 38.35 4.26
1072 1309 0.341258 TGGATCTCCCTCTGCCTCTT 59.659 55.000 0.00 0.00 35.38 2.85
1101 1338 3.693085 GGATCAGTGCATCATTGTCACTT 59.307 43.478 0.00 0.00 37.80 3.16
1155 1395 2.509569 TGTGAGAGAGACAGAGGTGAC 58.490 52.381 0.00 0.00 0.00 3.67
1188 1428 3.794028 CGATGTTCTAGTGCTTGCTAGAC 59.206 47.826 0.00 8.37 44.84 2.59
1190 1430 4.873746 TGTTCTAGTGCTTGCTAGACTT 57.126 40.909 0.00 0.00 44.84 3.01
1313 1554 0.592637 TGCTGTGGCAGAAATTGTCG 59.407 50.000 0.00 0.00 44.28 4.35
1321 1562 1.135689 GCAGAAATTGTCGATTGCCGT 60.136 47.619 0.00 0.00 39.75 5.68
1323 1564 3.785505 GCAGAAATTGTCGATTGCCGTAG 60.786 47.826 0.00 0.00 39.75 3.51
1359 1600 4.101585 CCAGATTGTATAAGCACCAGAGGA 59.898 45.833 0.00 0.00 0.00 3.71
1414 1666 2.167662 CTTCCCGTAATGCCCAGTTTT 58.832 47.619 0.00 0.00 0.00 2.43
1418 1670 3.506844 TCCCGTAATGCCCAGTTTTAAAC 59.493 43.478 0.00 0.00 0.00 2.01
1447 1794 6.926272 AGAGACTGTATTTTGAGTTGTCAGAC 59.074 38.462 0.00 0.00 32.98 3.51
1461 1808 5.995282 AGTTGTCAGACGACCATTTTTCATA 59.005 36.000 16.37 0.00 41.85 2.15
1496 2951 8.500753 TTGGATTGGTAACTACATGTAACATC 57.499 34.615 7.06 3.19 37.61 3.06
1500 2955 8.732746 ATTGGTAACTACATGTAACATCTTCC 57.267 34.615 7.06 4.52 37.61 3.46
1501 2956 6.646267 TGGTAACTACATGTAACATCTTCCC 58.354 40.000 7.06 0.56 37.61 3.97
1502 2957 6.213802 TGGTAACTACATGTAACATCTTCCCA 59.786 38.462 7.06 2.98 37.61 4.37
1503 2958 7.107542 GGTAACTACATGTAACATCTTCCCAA 58.892 38.462 7.06 0.00 0.00 4.12
1504 2959 7.280205 GGTAACTACATGTAACATCTTCCCAAG 59.720 40.741 7.06 0.00 0.00 3.61
1845 3345 6.849085 TTGATAATAATGGGTGCTGTGTTT 57.151 33.333 0.00 0.00 0.00 2.83
1870 3370 3.192466 GGAGCATTTTCATTCATGGCAC 58.808 45.455 0.00 0.00 0.00 5.01
1927 3435 1.324740 AATGGTAGCCGCGGTGTCTA 61.325 55.000 28.70 16.85 0.00 2.59
1940 3449 4.910456 CGCGGTGTCTAGAAGTTATGATAC 59.090 45.833 0.00 0.00 0.00 2.24
1941 3450 5.277876 CGCGGTGTCTAGAAGTTATGATACT 60.278 44.000 0.00 0.00 0.00 2.12
1942 3451 6.144175 GCGGTGTCTAGAAGTTATGATACTC 58.856 44.000 0.00 0.00 0.00 2.59
1943 3452 6.670233 CGGTGTCTAGAAGTTATGATACTCC 58.330 44.000 0.00 0.00 0.00 3.85
1944 3453 6.294065 CGGTGTCTAGAAGTTATGATACTCCC 60.294 46.154 0.00 0.00 0.00 4.30
1945 3454 6.778559 GGTGTCTAGAAGTTATGATACTCCCT 59.221 42.308 0.00 0.00 0.00 4.20
1946 3455 7.040271 GGTGTCTAGAAGTTATGATACTCCCTC 60.040 44.444 0.00 0.00 0.00 4.30
1947 3456 7.005296 TGTCTAGAAGTTATGATACTCCCTCC 58.995 42.308 0.00 0.00 0.00 4.30
1948 3457 7.147105 TGTCTAGAAGTTATGATACTCCCTCCT 60.147 40.741 0.00 0.00 0.00 3.69
1949 3458 7.726738 GTCTAGAAGTTATGATACTCCCTCCTT 59.273 40.741 0.00 0.00 0.00 3.36
1950 3459 6.987403 AGAAGTTATGATACTCCCTCCTTC 57.013 41.667 0.00 0.00 0.00 3.46
1951 3460 5.841783 AGAAGTTATGATACTCCCTCCTTCC 59.158 44.000 0.00 0.00 0.00 3.46
1952 3461 5.157770 AGTTATGATACTCCCTCCTTCCA 57.842 43.478 0.00 0.00 0.00 3.53
1953 3462 5.731924 AGTTATGATACTCCCTCCTTCCAT 58.268 41.667 0.00 0.00 0.00 3.41
1954 3463 6.153924 AGTTATGATACTCCCTCCTTCCATT 58.846 40.000 0.00 0.00 0.00 3.16
1955 3464 6.621514 AGTTATGATACTCCCTCCTTCCATTT 59.378 38.462 0.00 0.00 0.00 2.32
1956 3465 7.794683 AGTTATGATACTCCCTCCTTCCATTTA 59.205 37.037 0.00 0.00 0.00 1.40
1957 3466 8.606830 GTTATGATACTCCCTCCTTCCATTTAT 58.393 37.037 0.00 0.00 0.00 1.40
1958 3467 9.852784 TTATGATACTCCCTCCTTCCATTTATA 57.147 33.333 0.00 0.00 0.00 0.98
1959 3468 8.940012 ATGATACTCCCTCCTTCCATTTATAT 57.060 34.615 0.00 0.00 0.00 0.86
1961 3470 9.852784 TGATACTCCCTCCTTCCATTTATATAA 57.147 33.333 0.00 0.00 0.00 0.98
1963 3472 7.575499 ACTCCCTCCTTCCATTTATATAAGG 57.425 40.000 0.00 0.00 39.93 2.69
1964 3473 6.012421 ACTCCCTCCTTCCATTTATATAAGGC 60.012 42.308 0.00 0.00 38.70 4.35
1965 3474 5.253096 TCCCTCCTTCCATTTATATAAGGCC 59.747 44.000 0.00 0.00 38.70 5.19
1966 3475 5.254032 CCCTCCTTCCATTTATATAAGGCCT 59.746 44.000 0.00 0.00 38.70 5.19
1967 3476 6.447084 CCCTCCTTCCATTTATATAAGGCCTA 59.553 42.308 5.16 0.00 38.70 3.93
1968 3477 7.036863 CCCTCCTTCCATTTATATAAGGCCTAA 60.037 40.741 5.16 0.00 38.70 2.69
1969 3478 8.560903 CCTCCTTCCATTTATATAAGGCCTAAT 58.439 37.037 5.16 2.64 38.70 1.73
1970 3479 9.401058 CTCCTTCCATTTATATAAGGCCTAATG 57.599 37.037 5.16 11.34 38.70 1.90
1971 3480 7.834181 TCCTTCCATTTATATAAGGCCTAATGC 59.166 37.037 5.16 0.00 38.70 3.56
1972 3481 7.836183 CCTTCCATTTATATAAGGCCTAATGCT 59.164 37.037 5.16 0.00 40.92 3.79
1973 3482 9.247861 CTTCCATTTATATAAGGCCTAATGCTT 57.752 33.333 5.16 0.00 40.92 3.91
1974 3483 9.600432 TTCCATTTATATAAGGCCTAATGCTTT 57.400 29.630 5.16 0.00 42.62 3.51
1975 3484 9.600432 TCCATTTATATAAGGCCTAATGCTTTT 57.400 29.630 5.16 0.00 40.22 2.27
1993 3502 3.430333 TTTTTCAAGACCGCCTTTGAC 57.570 42.857 0.00 0.00 31.42 3.18
1994 3503 2.341846 TTTCAAGACCGCCTTTGACT 57.658 45.000 0.00 0.00 31.42 3.41
1995 3504 3.478857 TTTCAAGACCGCCTTTGACTA 57.521 42.857 0.00 0.00 31.42 2.59
1996 3505 3.695830 TTCAAGACCGCCTTTGACTAT 57.304 42.857 0.00 0.00 31.42 2.12
1997 3506 3.695830 TCAAGACCGCCTTTGACTATT 57.304 42.857 0.00 0.00 31.42 1.73
1998 3507 3.334691 TCAAGACCGCCTTTGACTATTG 58.665 45.455 0.00 0.00 31.42 1.90
1999 3508 3.007506 TCAAGACCGCCTTTGACTATTGA 59.992 43.478 0.00 0.00 31.42 2.57
2000 3509 3.914426 AGACCGCCTTTGACTATTGAT 57.086 42.857 0.00 0.00 0.00 2.57
2001 3510 5.105106 TCAAGACCGCCTTTGACTATTGATA 60.105 40.000 0.00 0.00 31.42 2.15
2002 3511 5.552870 AGACCGCCTTTGACTATTGATAT 57.447 39.130 0.00 0.00 0.00 1.63
2003 3512 5.300752 AGACCGCCTTTGACTATTGATATG 58.699 41.667 0.00 0.00 0.00 1.78
2004 3513 5.070446 AGACCGCCTTTGACTATTGATATGA 59.930 40.000 0.00 0.00 0.00 2.15
2005 3514 5.869579 ACCGCCTTTGACTATTGATATGAT 58.130 37.500 0.00 0.00 0.00 2.45
2006 3515 6.299141 ACCGCCTTTGACTATTGATATGATT 58.701 36.000 0.00 0.00 0.00 2.57
2007 3516 7.450074 ACCGCCTTTGACTATTGATATGATTA 58.550 34.615 0.00 0.00 0.00 1.75
2008 3517 7.936847 ACCGCCTTTGACTATTGATATGATTAA 59.063 33.333 0.00 0.00 0.00 1.40
2009 3518 8.950210 CCGCCTTTGACTATTGATATGATTAAT 58.050 33.333 0.00 0.00 0.00 1.40
2081 3590 4.852609 ACTTACGAATTTGACGGTATGC 57.147 40.909 0.00 0.00 34.93 3.14
2082 3591 4.501071 ACTTACGAATTTGACGGTATGCT 58.499 39.130 0.00 0.00 34.93 3.79
2083 3592 4.933400 ACTTACGAATTTGACGGTATGCTT 59.067 37.500 0.00 0.00 34.93 3.91
2084 3593 5.410439 ACTTACGAATTTGACGGTATGCTTT 59.590 36.000 0.00 0.00 34.93 3.51
2085 3594 4.078363 ACGAATTTGACGGTATGCTTTG 57.922 40.909 0.00 0.00 34.93 2.77
2086 3595 3.500680 ACGAATTTGACGGTATGCTTTGT 59.499 39.130 0.00 0.00 34.93 2.83
2087 3596 4.023536 ACGAATTTGACGGTATGCTTTGTT 60.024 37.500 0.00 0.00 34.93 2.83
2088 3597 4.915085 CGAATTTGACGGTATGCTTTGTTT 59.085 37.500 0.00 0.00 0.00 2.83
2089 3598 6.081049 CGAATTTGACGGTATGCTTTGTTTA 58.919 36.000 0.00 0.00 0.00 2.01
2090 3599 6.579292 CGAATTTGACGGTATGCTTTGTTTAA 59.421 34.615 0.00 0.00 0.00 1.52
2091 3600 7.408921 CGAATTTGACGGTATGCTTTGTTTAAC 60.409 37.037 0.00 0.00 0.00 2.01
2092 3601 6.380095 TTTGACGGTATGCTTTGTTTAACT 57.620 33.333 0.00 0.00 0.00 2.24
2093 3602 6.380095 TTGACGGTATGCTTTGTTTAACTT 57.620 33.333 0.00 0.00 0.00 2.66
2094 3603 5.753744 TGACGGTATGCTTTGTTTAACTTG 58.246 37.500 0.00 0.00 0.00 3.16
2095 3604 4.542735 ACGGTATGCTTTGTTTAACTTGC 58.457 39.130 0.00 0.00 0.00 4.01
2096 3605 4.036971 ACGGTATGCTTTGTTTAACTTGCA 59.963 37.500 10.93 10.93 34.88 4.08
2097 3606 5.160641 CGGTATGCTTTGTTTAACTTGCAT 58.839 37.500 19.41 19.41 42.64 3.96
2098 3607 5.060816 CGGTATGCTTTGTTTAACTTGCATG 59.939 40.000 22.10 0.00 40.65 4.06
2099 3608 5.925969 GGTATGCTTTGTTTAACTTGCATGT 59.074 36.000 22.10 0.00 40.65 3.21
2100 3609 6.089417 GGTATGCTTTGTTTAACTTGCATGTC 59.911 38.462 22.10 16.99 40.65 3.06
2101 3610 5.003692 TGCTTTGTTTAACTTGCATGTCA 57.996 34.783 5.61 0.00 0.00 3.58
2102 3611 5.599732 TGCTTTGTTTAACTTGCATGTCAT 58.400 33.333 5.61 0.00 0.00 3.06
2103 3612 6.743110 TGCTTTGTTTAACTTGCATGTCATA 58.257 32.000 5.61 0.00 0.00 2.15
2104 3613 7.377398 TGCTTTGTTTAACTTGCATGTCATAT 58.623 30.769 5.61 0.00 0.00 1.78
2105 3614 8.518702 TGCTTTGTTTAACTTGCATGTCATATA 58.481 29.630 5.61 0.00 0.00 0.86
2106 3615 9.520204 GCTTTGTTTAACTTGCATGTCATATAT 57.480 29.630 5.61 0.00 0.00 0.86
2115 3624 8.859236 ACTTGCATGTCATATATTATTGCTCT 57.141 30.769 0.00 0.00 0.00 4.09
2116 3625 9.948964 ACTTGCATGTCATATATTATTGCTCTA 57.051 29.630 0.00 0.00 0.00 2.43
2119 3628 9.723601 TGCATGTCATATATTATTGCTCTAACA 57.276 29.630 0.00 0.00 0.00 2.41
2120 3629 9.979270 GCATGTCATATATTATTGCTCTAACAC 57.021 33.333 0.00 0.00 0.00 3.32
2129 3638 7.759489 ATTATTGCTCTAACACTTGGTCAAA 57.241 32.000 0.00 0.00 0.00 2.69
2130 3639 7.575414 TTATTGCTCTAACACTTGGTCAAAA 57.425 32.000 0.00 0.00 0.00 2.44
2131 3640 4.893424 TGCTCTAACACTTGGTCAAAAC 57.107 40.909 0.00 0.00 0.00 2.43
2132 3641 4.523083 TGCTCTAACACTTGGTCAAAACT 58.477 39.130 0.00 0.00 0.00 2.66
2133 3642 5.676552 TGCTCTAACACTTGGTCAAAACTA 58.323 37.500 0.00 0.00 0.00 2.24
2134 3643 5.758296 TGCTCTAACACTTGGTCAAAACTAG 59.242 40.000 0.00 0.00 0.00 2.57
2135 3644 5.334182 GCTCTAACACTTGGTCAAAACTAGC 60.334 44.000 0.00 0.00 0.00 3.42
2136 3645 5.061179 TCTAACACTTGGTCAAAACTAGCC 58.939 41.667 0.00 0.00 0.00 3.93
2137 3646 3.577805 ACACTTGGTCAAAACTAGCCT 57.422 42.857 0.00 0.00 0.00 4.58
2138 3647 3.477530 ACACTTGGTCAAAACTAGCCTC 58.522 45.455 0.00 0.00 0.00 4.70
2139 3648 2.480419 CACTTGGTCAAAACTAGCCTCG 59.520 50.000 0.00 0.00 0.00 4.63
2140 3649 2.104281 ACTTGGTCAAAACTAGCCTCGT 59.896 45.455 0.00 0.00 0.00 4.18
2141 3650 3.322828 ACTTGGTCAAAACTAGCCTCGTA 59.677 43.478 0.00 0.00 0.00 3.43
2142 3651 4.202284 ACTTGGTCAAAACTAGCCTCGTAA 60.202 41.667 0.00 0.00 0.00 3.18
2143 3652 4.339872 TGGTCAAAACTAGCCTCGTAAA 57.660 40.909 0.00 0.00 0.00 2.01
2144 3653 4.060205 TGGTCAAAACTAGCCTCGTAAAC 58.940 43.478 0.00 0.00 0.00 2.01
2145 3654 3.122445 GGTCAAAACTAGCCTCGTAAACG 59.878 47.826 0.00 0.00 41.45 3.60
2146 3655 3.737774 GTCAAAACTAGCCTCGTAAACGT 59.262 43.478 2.02 0.00 40.80 3.99
2147 3656 4.917415 GTCAAAACTAGCCTCGTAAACGTA 59.083 41.667 2.02 0.00 40.80 3.57
2148 3657 5.574443 GTCAAAACTAGCCTCGTAAACGTAT 59.426 40.000 2.02 0.00 40.80 3.06
2149 3658 6.089954 GTCAAAACTAGCCTCGTAAACGTATT 59.910 38.462 2.02 0.00 40.80 1.89
2150 3659 7.273381 GTCAAAACTAGCCTCGTAAACGTATTA 59.727 37.037 2.02 0.00 40.80 0.98
2151 3660 7.485913 TCAAAACTAGCCTCGTAAACGTATTAG 59.514 37.037 2.02 4.14 40.80 1.73
2152 3661 5.429957 ACTAGCCTCGTAAACGTATTAGG 57.570 43.478 2.02 3.25 40.80 2.69
2154 3663 2.130395 GCCTCGTAAACGTATTAGGCC 58.870 52.381 17.53 0.00 44.72 5.19
2155 3664 2.747436 CCTCGTAAACGTATTAGGCCC 58.253 52.381 0.00 0.00 40.80 5.80
2156 3665 2.363359 CCTCGTAAACGTATTAGGCCCT 59.637 50.000 0.00 0.00 40.80 5.19
2157 3666 3.569701 CCTCGTAAACGTATTAGGCCCTA 59.430 47.826 0.00 0.00 40.80 3.53
2158 3667 4.219288 CCTCGTAAACGTATTAGGCCCTAT 59.781 45.833 0.00 0.00 40.80 2.57
2159 3668 5.415701 CCTCGTAAACGTATTAGGCCCTATA 59.584 44.000 0.00 0.00 40.80 1.31
2160 3669 6.096001 CCTCGTAAACGTATTAGGCCCTATAT 59.904 42.308 0.00 0.00 40.80 0.86
2161 3670 7.283127 CCTCGTAAACGTATTAGGCCCTATATA 59.717 40.741 0.00 0.00 40.80 0.86
2162 3671 8.213518 TCGTAAACGTATTAGGCCCTATATAG 57.786 38.462 0.00 2.46 40.80 1.31
2163 3672 8.046708 TCGTAAACGTATTAGGCCCTATATAGA 58.953 37.037 11.53 0.00 40.80 1.98
2164 3673 8.844244 CGTAAACGTATTAGGCCCTATATAGAT 58.156 37.037 11.53 0.00 34.11 1.98
2165 3674 9.962783 GTAAACGTATTAGGCCCTATATAGATG 57.037 37.037 11.53 3.39 0.00 2.90
2166 3675 8.834004 AAACGTATTAGGCCCTATATAGATGA 57.166 34.615 11.53 0.00 0.00 2.92
2167 3676 8.834004 AACGTATTAGGCCCTATATAGATGAA 57.166 34.615 11.53 0.00 0.00 2.57
2168 3677 8.834004 ACGTATTAGGCCCTATATAGATGAAA 57.166 34.615 11.53 0.10 0.00 2.69
2169 3678 8.915036 ACGTATTAGGCCCTATATAGATGAAAG 58.085 37.037 11.53 0.00 0.00 2.62
2170 3679 8.361139 CGTATTAGGCCCTATATAGATGAAAGG 58.639 40.741 11.53 3.94 0.00 3.11
2171 3680 9.435570 GTATTAGGCCCTATATAGATGAAAGGA 57.564 37.037 11.53 0.00 0.00 3.36
2172 3681 7.979786 TTAGGCCCTATATAGATGAAAGGAG 57.020 40.000 11.53 0.00 0.00 3.69
2173 3682 6.172350 AGGCCCTATATAGATGAAAGGAGA 57.828 41.667 11.53 0.00 0.00 3.71
2174 3683 6.201591 AGGCCCTATATAGATGAAAGGAGAG 58.798 44.000 11.53 0.00 0.00 3.20
2175 3684 6.010291 AGGCCCTATATAGATGAAAGGAGAGA 60.010 42.308 11.53 0.00 0.00 3.10
2176 3685 6.323739 GGCCCTATATAGATGAAAGGAGAGAG 59.676 46.154 11.53 0.00 0.00 3.20
2177 3686 6.895204 GCCCTATATAGATGAAAGGAGAGAGT 59.105 42.308 11.53 0.00 0.00 3.24
2232 3790 5.119694 GTGTTGTTTTTGCCCCTCATAAAA 58.880 37.500 0.00 0.00 29.64 1.52
2259 3817 6.833933 AGGTTTTTCTATGTTTGTCAGACCTT 59.166 34.615 0.00 0.00 28.80 3.50
2314 3875 0.404426 GTAGGGCCCTCTGGTTTGTT 59.596 55.000 32.80 1.90 0.00 2.83
2319 3880 1.111277 GCCCTCTGGTTTGTTGTTGT 58.889 50.000 0.00 0.00 0.00 3.32
2339 3900 3.005261 TGTTGCGTTGAAATATGTTGCCT 59.995 39.130 0.00 0.00 0.00 4.75
2381 3954 5.104527 AGTCCGGTCTTTTGAATGGATGATA 60.105 40.000 0.00 0.00 36.69 2.15
2382 3955 5.588648 GTCCGGTCTTTTGAATGGATGATAA 59.411 40.000 0.00 0.00 36.69 1.75
2396 3970 3.125316 GGATGATAATTGAATCGGTCGGC 59.875 47.826 0.00 0.00 0.00 5.54
2422 3996 5.703978 TGAATGAATTCATTGTGACCGTT 57.296 34.783 32.89 11.15 45.72 4.44
2424 4009 4.701956 ATGAATTCATTGTGACCGTTCC 57.298 40.909 15.36 0.00 31.37 3.62
2426 4011 3.751175 TGAATTCATTGTGACCGTTCCTC 59.249 43.478 3.38 0.00 0.00 3.71
2429 4014 1.967779 TCATTGTGACCGTTCCTCTCA 59.032 47.619 0.00 0.00 0.00 3.27
2436 4021 3.632604 GTGACCGTTCCTCTCATGATCTA 59.367 47.826 0.00 0.00 0.00 1.98
2437 4022 3.885901 TGACCGTTCCTCTCATGATCTAG 59.114 47.826 0.00 0.00 0.00 2.43
2438 4023 3.226777 ACCGTTCCTCTCATGATCTAGG 58.773 50.000 11.07 11.07 0.00 3.02
2458 4045 2.093341 GGAAGAATAAGGGGCGTGTGTA 60.093 50.000 0.00 0.00 0.00 2.90
2473 4060 1.076332 GTGTATCGGCACACTTGACC 58.924 55.000 11.68 0.00 44.41 4.02
2524 4117 2.127651 TGTTCCCCAAGAAGGTAGGT 57.872 50.000 0.00 0.00 34.29 3.08
2530 4123 1.620524 CCCAAGAAGGTAGGTCCGGTA 60.621 57.143 0.00 0.00 41.99 4.02
2533 4126 3.431766 CCAAGAAGGTAGGTCCGGTAATG 60.432 52.174 0.00 0.00 41.99 1.90
2537 4130 2.823959 AGGTAGGTCCGGTAATGAACA 58.176 47.619 0.00 0.00 41.99 3.18
2548 4141 5.182380 TCCGGTAATGAACAGAATTTGGTTC 59.818 40.000 0.00 13.34 42.82 3.62
2556 4178 7.287512 TGAACAGAATTTGGTTCATCAATCA 57.712 32.000 17.06 0.37 46.01 2.57
2561 4183 8.206189 ACAGAATTTGGTTCATCAATCAAAAGT 58.794 29.630 0.00 0.00 44.13 2.66
2589 4211 0.615544 CAAATGGCCACCCACCTGAT 60.616 55.000 8.16 0.00 45.77 2.90
2590 4212 1.006813 AAATGGCCACCCACCTGATA 58.993 50.000 8.16 0.00 45.77 2.15
2591 4213 1.234806 AATGGCCACCCACCTGATAT 58.765 50.000 8.16 0.00 45.77 1.63
2592 4214 0.773644 ATGGCCACCCACCTGATATC 59.226 55.000 8.16 0.00 45.77 1.63
2593 4215 0.623031 TGGCCACCCACCTGATATCA 60.623 55.000 0.00 5.07 35.79 2.15
2595 4217 1.271597 GGCCACCCACCTGATATCATC 60.272 57.143 5.72 0.00 0.00 2.92
2599 4221 3.244353 CCACCCACCTGATATCATCTCAC 60.244 52.174 5.72 0.00 0.00 3.51
2600 4222 2.630098 ACCCACCTGATATCATCTCACG 59.370 50.000 5.72 0.00 0.00 4.35
2602 4224 3.513119 CCCACCTGATATCATCTCACGAT 59.487 47.826 5.72 0.00 0.00 3.73
2605 4227 6.096036 CCACCTGATATCATCTCACGATAAC 58.904 44.000 5.72 0.00 0.00 1.89
2606 4228 6.096036 CACCTGATATCATCTCACGATAACC 58.904 44.000 5.72 0.00 0.00 2.85
2608 4230 6.267699 ACCTGATATCATCTCACGATAACCAA 59.732 38.462 5.72 0.00 0.00 3.67
2609 4231 6.810676 CCTGATATCATCTCACGATAACCAAG 59.189 42.308 5.72 0.00 0.00 3.61
2610 4232 6.159293 TGATATCATCTCACGATAACCAAGC 58.841 40.000 0.00 0.00 0.00 4.01
2611 4233 2.809446 TCATCTCACGATAACCAAGCG 58.191 47.619 0.00 0.00 0.00 4.68
2612 4234 1.860950 CATCTCACGATAACCAAGCGG 59.139 52.381 0.00 0.00 38.77 5.52
2613 4235 1.179152 TCTCACGATAACCAAGCGGA 58.821 50.000 0.00 0.00 35.59 5.54
2614 4236 1.134367 TCTCACGATAACCAAGCGGAG 59.866 52.381 0.00 0.00 35.59 4.63
2628 4250 2.161486 CGGAGCTGCGTGTTCTAGC 61.161 63.158 20.53 0.00 37.71 3.42
2637 4259 1.473434 GCGTGTTCTAGCTTAGGGCAT 60.473 52.381 0.00 0.00 44.79 4.40
2641 4263 3.028850 TGTTCTAGCTTAGGGCATACGT 58.971 45.455 0.00 0.00 44.79 3.57
2645 4271 1.379527 AGCTTAGGGCATACGTTTGC 58.620 50.000 20.95 20.95 44.79 3.68
2670 4298 6.649141 CCCAAAAGAAAAAGTTAAGGGCATAC 59.351 38.462 0.00 0.00 0.00 2.39
2671 4299 7.213678 CCAAAAGAAAAAGTTAAGGGCATACA 58.786 34.615 0.00 0.00 0.00 2.29
2689 4318 1.689273 ACAAATTTACCGCTTTGCCCA 59.311 42.857 0.00 0.00 36.12 5.36
2701 4330 4.545706 TGCCCATCGGATCACGCC 62.546 66.667 0.00 0.00 43.86 5.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 47 1.258445 ACGAATCGGAGCAGGAAGGT 61.258 55.000 7.80 0.00 0.00 3.50
95 97 4.419921 GGGGTGAATCGGGGCGTT 62.420 66.667 0.00 0.00 0.00 4.84
125 127 3.751698 TCCTAGGACATCATATCGTCGTG 59.248 47.826 7.62 0.00 32.82 4.35
129 131 3.767711 TGCTCCTAGGACATCATATCGT 58.232 45.455 7.62 0.00 0.00 3.73
130 132 4.381398 CCTTGCTCCTAGGACATCATATCG 60.381 50.000 7.62 0.00 34.56 2.92
131 133 4.081198 CCCTTGCTCCTAGGACATCATATC 60.081 50.000 7.62 0.00 34.56 1.63
132 134 3.843027 CCCTTGCTCCTAGGACATCATAT 59.157 47.826 7.62 0.00 34.56 1.78
133 135 3.116746 TCCCTTGCTCCTAGGACATCATA 60.117 47.826 7.62 0.00 34.56 2.15
177 193 2.825836 GATCCACAGGCAAGGGCG 60.826 66.667 0.00 0.00 42.47 6.13
180 197 0.394899 GGAAGGATCCACAGGCAAGG 60.395 60.000 15.82 0.00 45.79 3.61
187 204 2.668632 GGTGCGGAAGGATCCACA 59.331 61.111 15.82 0.76 46.97 4.17
232 271 4.221924 GCAGAGGGATTTCTATAGGGTCTC 59.778 50.000 0.00 0.00 0.00 3.36
233 272 4.164204 GCAGAGGGATTTCTATAGGGTCT 58.836 47.826 0.00 0.00 0.00 3.85
234 273 3.262151 GGCAGAGGGATTTCTATAGGGTC 59.738 52.174 0.00 0.00 0.00 4.46
235 274 3.252351 GGCAGAGGGATTTCTATAGGGT 58.748 50.000 0.00 0.00 0.00 4.34
236 275 2.573915 GGGCAGAGGGATTTCTATAGGG 59.426 54.545 0.00 0.00 0.00 3.53
237 276 2.234908 CGGGCAGAGGGATTTCTATAGG 59.765 54.545 0.00 0.00 0.00 2.57
240 279 1.694696 GACGGGCAGAGGGATTTCTAT 59.305 52.381 0.00 0.00 0.00 1.98
262 315 3.138798 GTGGAGCTCGGCTACGGA 61.139 66.667 7.83 0.00 43.58 4.69
329 382 9.956640 ATCATAAGACCAGGAATAAATCATCTC 57.043 33.333 0.00 0.00 0.00 2.75
427 489 1.149401 GCCCTTCCCTGCTATGGAC 59.851 63.158 0.00 0.00 0.00 4.02
445 507 6.853872 TCAAATGTTCGGTTCAATTTACTTCG 59.146 34.615 0.00 0.00 0.00 3.79
777 848 1.755179 TTTCTTCCATGGCTGCTAGC 58.245 50.000 6.96 8.10 41.46 3.42
858 959 7.115378 GGTGGACGTACCGAAATTATATTGTAG 59.885 40.741 0.00 0.00 42.61 2.74
859 960 6.922957 GGTGGACGTACCGAAATTATATTGTA 59.077 38.462 0.00 0.00 42.61 2.41
884 986 3.123621 GTGCTTACTGGAATTCTGACACG 59.876 47.826 5.23 0.00 0.00 4.49
887 989 3.126000 GCAGTGCTTACTGGAATTCTGAC 59.874 47.826 8.18 0.00 38.14 3.51
957 1059 7.696992 TGAAAAGGAAAACCTATGTACATCC 57.303 36.000 12.68 6.46 0.00 3.51
994 1103 4.503910 TGCAAAACTATGTACATCGCTCT 58.496 39.130 12.68 0.00 0.00 4.09
996 1105 4.454161 TGTTGCAAAACTATGTACATCGCT 59.546 37.500 12.68 0.00 0.00 4.93
997 1106 4.717991 TGTTGCAAAACTATGTACATCGC 58.282 39.130 12.68 7.38 0.00 4.58
998 1107 4.788100 GCTGTTGCAAAACTATGTACATCG 59.212 41.667 12.68 8.88 39.41 3.84
999 1108 4.788100 CGCTGTTGCAAAACTATGTACATC 59.212 41.667 12.68 0.00 39.64 3.06
1000 1109 4.215399 ACGCTGTTGCAAAACTATGTACAT 59.785 37.500 13.93 13.93 39.64 2.29
1001 1110 3.562141 ACGCTGTTGCAAAACTATGTACA 59.438 39.130 0.00 0.00 39.64 2.90
1002 1111 4.084013 AGACGCTGTTGCAAAACTATGTAC 60.084 41.667 0.00 0.00 39.64 2.90
1003 1112 4.062293 AGACGCTGTTGCAAAACTATGTA 58.938 39.130 0.00 0.00 39.64 2.29
1004 1113 2.878406 AGACGCTGTTGCAAAACTATGT 59.122 40.909 0.00 0.00 39.64 2.29
1005 1114 3.542712 AGACGCTGTTGCAAAACTATG 57.457 42.857 0.00 0.00 39.64 2.23
1041 1278 2.305009 GGAGATCCATTCAGGCCAAAG 58.695 52.381 5.01 0.00 37.29 2.77
1045 1282 0.399833 GAGGGAGATCCATTCAGGCC 59.600 60.000 0.00 0.00 38.24 5.19
1048 1285 1.072015 GGCAGAGGGAGATCCATTCAG 59.928 57.143 0.47 0.00 38.24 3.02
1067 1304 2.751806 GCACTGATCCCAGAAAAAGAGG 59.248 50.000 0.00 0.00 43.02 3.69
1072 1309 3.438216 TGATGCACTGATCCCAGAAAA 57.562 42.857 0.00 0.00 43.02 2.29
1155 1395 2.751166 AGAACATCGGACCTGAACAG 57.249 50.000 0.00 0.00 0.00 3.16
1188 1428 2.985896 TCCTTCGGCCATACAAAGAAG 58.014 47.619 2.24 5.40 38.32 2.85
1190 1430 2.917933 CATCCTTCGGCCATACAAAGA 58.082 47.619 2.24 0.00 0.00 2.52
1278 1518 3.092301 ACAGCAAGAAGGAAAATAGGGC 58.908 45.455 0.00 0.00 0.00 5.19
1313 1554 3.438297 TTCAGTAGCTCTACGGCAATC 57.562 47.619 0.00 0.00 40.80 2.67
1321 1562 4.406972 ACAATCTGGCATTCAGTAGCTCTA 59.593 41.667 0.00 0.00 43.76 2.43
1323 1564 3.539604 ACAATCTGGCATTCAGTAGCTC 58.460 45.455 0.00 0.00 43.76 4.09
1418 1670 7.867909 TGACAACTCAAAATACAGTCTCTACAG 59.132 37.037 0.00 0.00 0.00 2.74
1423 1675 6.129062 CGTCTGACAACTCAAAATACAGTCTC 60.129 42.308 8.73 0.00 0.00 3.36
1447 1794 4.499040 GGTGCGAAATATGAAAAATGGTCG 59.501 41.667 0.00 0.00 0.00 4.79
1461 1808 1.923356 ACCAATCCAAGGTGCGAAAT 58.077 45.000 0.00 0.00 38.13 2.17
1496 2951 4.797275 GCAGGACAAAAATGTCTTGGGAAG 60.797 45.833 18.67 0.00 43.38 3.46
1500 2955 3.645884 CTGCAGGACAAAAATGTCTTGG 58.354 45.455 18.67 6.86 43.38 3.61
1501 2956 3.054878 GCTGCAGGACAAAAATGTCTTG 58.945 45.455 17.12 14.50 45.14 3.02
1502 2957 2.694628 TGCTGCAGGACAAAAATGTCTT 59.305 40.909 17.12 0.00 38.74 3.01
1503 2958 2.295349 CTGCTGCAGGACAAAAATGTCT 59.705 45.455 21.71 0.00 38.74 3.41
1504 2959 2.669364 CTGCTGCAGGACAAAAATGTC 58.331 47.619 21.71 0.36 38.04 3.06
1541 3013 2.264480 CGAACCCTGCCATCGACA 59.736 61.111 0.00 0.00 38.82 4.35
1723 3213 2.121963 TGGGGTGGAGGAGCTTGT 60.122 61.111 0.00 0.00 0.00 3.16
1845 3345 4.442332 GCCATGAATGAAAATGCTCCATCA 60.442 41.667 0.00 0.00 0.00 3.07
1870 3370 0.250234 TCAACTCCAAGCTCCATCCG 59.750 55.000 0.00 0.00 0.00 4.18
1927 3435 5.841783 GGAAGGAGGGAGTATCATAACTTCT 59.158 44.000 0.00 0.00 36.25 2.85
1940 3449 6.418946 GCCTTATATAAATGGAAGGAGGGAG 58.581 44.000 3.71 0.00 40.88 4.30
1941 3450 5.253096 GGCCTTATATAAATGGAAGGAGGGA 59.747 44.000 0.00 0.00 40.88 4.20
1942 3451 5.254032 AGGCCTTATATAAATGGAAGGAGGG 59.746 44.000 0.00 0.00 40.88 4.30
1943 3452 6.394345 AGGCCTTATATAAATGGAAGGAGG 57.606 41.667 0.00 0.00 40.88 4.30
1944 3453 9.401058 CATTAGGCCTTATATAAATGGAAGGAG 57.599 37.037 12.58 0.00 40.88 3.69
1945 3454 7.834181 GCATTAGGCCTTATATAAATGGAAGGA 59.166 37.037 12.58 0.00 40.88 3.36
1946 3455 7.836183 AGCATTAGGCCTTATATAAATGGAAGG 59.164 37.037 12.58 0.00 46.50 3.46
1947 3456 8.814038 AGCATTAGGCCTTATATAAATGGAAG 57.186 34.615 12.58 0.00 46.50 3.46
1948 3457 9.600432 AAAGCATTAGGCCTTATATAAATGGAA 57.400 29.630 12.58 0.00 46.50 3.53
1949 3458 9.600432 AAAAGCATTAGGCCTTATATAAATGGA 57.400 29.630 12.58 0.00 46.50 3.41
1973 3482 3.020984 AGTCAAAGGCGGTCTTGAAAAA 58.979 40.909 0.00 0.00 35.55 1.94
1974 3483 2.650322 AGTCAAAGGCGGTCTTGAAAA 58.350 42.857 0.00 0.00 35.55 2.29
1975 3484 2.341846 AGTCAAAGGCGGTCTTGAAA 57.658 45.000 0.00 0.00 35.55 2.69
1976 3485 3.695830 ATAGTCAAAGGCGGTCTTGAA 57.304 42.857 0.00 0.00 35.55 2.69
1977 3486 3.007506 TCAATAGTCAAAGGCGGTCTTGA 59.992 43.478 0.00 0.00 35.55 3.02
1978 3487 3.334691 TCAATAGTCAAAGGCGGTCTTG 58.665 45.455 0.00 0.00 35.55 3.02
1979 3488 3.695830 TCAATAGTCAAAGGCGGTCTT 57.304 42.857 0.00 0.00 37.28 3.01
1980 3489 3.914426 ATCAATAGTCAAAGGCGGTCT 57.086 42.857 0.00 0.00 0.00 3.85
1981 3490 5.297547 TCATATCAATAGTCAAAGGCGGTC 58.702 41.667 0.00 0.00 0.00 4.79
1982 3491 5.290493 TCATATCAATAGTCAAAGGCGGT 57.710 39.130 0.00 0.00 0.00 5.68
1983 3492 6.808008 AATCATATCAATAGTCAAAGGCGG 57.192 37.500 0.00 0.00 0.00 6.13
2055 3564 7.745594 GCATACCGTCAAATTCGTAAGTAAAAA 59.254 33.333 0.00 0.00 39.48 1.94
2056 3565 7.118101 AGCATACCGTCAAATTCGTAAGTAAAA 59.882 33.333 0.00 0.00 39.48 1.52
2057 3566 6.591062 AGCATACCGTCAAATTCGTAAGTAAA 59.409 34.615 0.00 0.00 39.48 2.01
2058 3567 6.101332 AGCATACCGTCAAATTCGTAAGTAA 58.899 36.000 0.00 0.00 39.48 2.24
2059 3568 5.653507 AGCATACCGTCAAATTCGTAAGTA 58.346 37.500 0.00 0.00 39.48 2.24
2060 3569 4.501071 AGCATACCGTCAAATTCGTAAGT 58.499 39.130 0.00 0.00 39.48 2.24
2061 3570 5.464965 AAGCATACCGTCAAATTCGTAAG 57.535 39.130 0.00 0.00 0.00 2.34
2062 3571 5.179742 ACAAAGCATACCGTCAAATTCGTAA 59.820 36.000 0.00 0.00 0.00 3.18
2063 3572 4.691685 ACAAAGCATACCGTCAAATTCGTA 59.308 37.500 0.00 0.00 0.00 3.43
2064 3573 3.500680 ACAAAGCATACCGTCAAATTCGT 59.499 39.130 0.00 0.00 0.00 3.85
2065 3574 4.078363 ACAAAGCATACCGTCAAATTCG 57.922 40.909 0.00 0.00 0.00 3.34
2066 3575 7.593644 AGTTAAACAAAGCATACCGTCAAATTC 59.406 33.333 0.00 0.00 0.00 2.17
2067 3576 7.430441 AGTTAAACAAAGCATACCGTCAAATT 58.570 30.769 0.00 0.00 0.00 1.82
2068 3577 6.977213 AGTTAAACAAAGCATACCGTCAAAT 58.023 32.000 0.00 0.00 0.00 2.32
2069 3578 6.380095 AGTTAAACAAAGCATACCGTCAAA 57.620 33.333 0.00 0.00 0.00 2.69
2070 3579 6.202937 CAAGTTAAACAAAGCATACCGTCAA 58.797 36.000 0.00 0.00 0.00 3.18
2071 3580 5.753744 CAAGTTAAACAAAGCATACCGTCA 58.246 37.500 0.00 0.00 0.00 4.35
2072 3581 4.615541 GCAAGTTAAACAAAGCATACCGTC 59.384 41.667 0.00 0.00 0.00 4.79
2073 3582 4.036971 TGCAAGTTAAACAAAGCATACCGT 59.963 37.500 0.00 0.00 0.00 4.83
2074 3583 4.541779 TGCAAGTTAAACAAAGCATACCG 58.458 39.130 0.00 0.00 0.00 4.02
2075 3584 5.925969 ACATGCAAGTTAAACAAAGCATACC 59.074 36.000 0.00 0.00 40.38 2.73
2076 3585 6.640499 TGACATGCAAGTTAAACAAAGCATAC 59.360 34.615 0.00 0.00 40.38 2.39
2077 3586 6.743110 TGACATGCAAGTTAAACAAAGCATA 58.257 32.000 0.00 0.00 40.38 3.14
2078 3587 5.599732 TGACATGCAAGTTAAACAAAGCAT 58.400 33.333 0.00 0.00 42.82 3.79
2079 3588 5.003692 TGACATGCAAGTTAAACAAAGCA 57.996 34.783 0.00 0.00 36.34 3.91
2080 3589 7.816945 ATATGACATGCAAGTTAAACAAAGC 57.183 32.000 0.00 0.00 0.00 3.51
2089 3598 9.293404 AGAGCAATAATATATGACATGCAAGTT 57.707 29.630 10.78 0.00 34.89 2.66
2090 3599 8.859236 AGAGCAATAATATATGACATGCAAGT 57.141 30.769 10.78 0.00 34.89 3.16
2093 3602 9.723601 TGTTAGAGCAATAATATATGACATGCA 57.276 29.630 10.78 0.00 34.89 3.96
2094 3603 9.979270 GTGTTAGAGCAATAATATATGACATGC 57.021 33.333 0.00 2.62 0.00 4.06
2103 3612 9.461312 TTTGACCAAGTGTTAGAGCAATAATAT 57.539 29.630 0.00 0.00 0.00 1.28
2104 3613 8.856153 TTTGACCAAGTGTTAGAGCAATAATA 57.144 30.769 0.00 0.00 0.00 0.98
2105 3614 7.759489 TTTGACCAAGTGTTAGAGCAATAAT 57.241 32.000 0.00 0.00 0.00 1.28
2106 3615 7.284489 AGTTTTGACCAAGTGTTAGAGCAATAA 59.716 33.333 0.00 0.00 0.00 1.40
2107 3616 6.770785 AGTTTTGACCAAGTGTTAGAGCAATA 59.229 34.615 0.00 0.00 0.00 1.90
2108 3617 5.594317 AGTTTTGACCAAGTGTTAGAGCAAT 59.406 36.000 0.00 0.00 0.00 3.56
2109 3618 4.947388 AGTTTTGACCAAGTGTTAGAGCAA 59.053 37.500 0.00 0.00 0.00 3.91
2110 3619 4.523083 AGTTTTGACCAAGTGTTAGAGCA 58.477 39.130 0.00 0.00 0.00 4.26
2111 3620 5.334182 GCTAGTTTTGACCAAGTGTTAGAGC 60.334 44.000 0.00 0.00 0.00 4.09
2112 3621 5.179555 GGCTAGTTTTGACCAAGTGTTAGAG 59.820 44.000 0.00 0.00 0.00 2.43
2113 3622 5.061179 GGCTAGTTTTGACCAAGTGTTAGA 58.939 41.667 0.00 0.00 0.00 2.10
2114 3623 5.063880 AGGCTAGTTTTGACCAAGTGTTAG 58.936 41.667 0.00 0.00 0.00 2.34
2115 3624 5.043737 AGGCTAGTTTTGACCAAGTGTTA 57.956 39.130 0.00 0.00 0.00 2.41
2116 3625 3.883489 GAGGCTAGTTTTGACCAAGTGTT 59.117 43.478 0.00 0.00 0.00 3.32
2117 3626 3.477530 GAGGCTAGTTTTGACCAAGTGT 58.522 45.455 0.00 0.00 0.00 3.55
2118 3627 2.480419 CGAGGCTAGTTTTGACCAAGTG 59.520 50.000 0.00 0.00 0.00 3.16
2119 3628 2.104281 ACGAGGCTAGTTTTGACCAAGT 59.896 45.455 0.00 0.00 0.00 3.16
2120 3629 2.767505 ACGAGGCTAGTTTTGACCAAG 58.232 47.619 0.00 0.00 0.00 3.61
2121 3630 2.922740 ACGAGGCTAGTTTTGACCAA 57.077 45.000 0.00 0.00 0.00 3.67
2122 3631 4.060205 GTTTACGAGGCTAGTTTTGACCA 58.940 43.478 5.36 0.00 0.00 4.02
2123 3632 3.122445 CGTTTACGAGGCTAGTTTTGACC 59.878 47.826 5.36 0.00 43.02 4.02
2124 3633 3.737774 ACGTTTACGAGGCTAGTTTTGAC 59.262 43.478 5.36 0.00 43.02 3.18
2125 3634 3.981211 ACGTTTACGAGGCTAGTTTTGA 58.019 40.909 5.36 0.00 43.02 2.69
2126 3635 6.399204 AATACGTTTACGAGGCTAGTTTTG 57.601 37.500 5.36 0.00 43.02 2.44
2127 3636 6.753744 CCTAATACGTTTACGAGGCTAGTTTT 59.246 38.462 5.36 0.00 43.02 2.43
2128 3637 6.268566 CCTAATACGTTTACGAGGCTAGTTT 58.731 40.000 5.36 0.00 43.02 2.66
2129 3638 5.734503 GCCTAATACGTTTACGAGGCTAGTT 60.735 44.000 19.46 0.00 46.02 2.24
2130 3639 4.261363 GCCTAATACGTTTACGAGGCTAGT 60.261 45.833 19.46 5.40 46.02 2.57
2131 3640 4.225208 GCCTAATACGTTTACGAGGCTAG 58.775 47.826 19.46 10.13 46.02 3.42
2132 3641 4.228912 GCCTAATACGTTTACGAGGCTA 57.771 45.455 19.46 0.46 46.02 3.93
2133 3642 3.089573 GCCTAATACGTTTACGAGGCT 57.910 47.619 19.46 0.00 46.02 4.58
2135 3644 2.363359 AGGGCCTAATACGTTTACGAGG 59.637 50.000 2.82 6.35 43.02 4.63
2136 3645 3.722728 AGGGCCTAATACGTTTACGAG 57.277 47.619 2.82 0.00 43.02 4.18
2137 3646 8.046708 TCTATATAGGGCCTAATACGTTTACGA 58.953 37.037 18.91 6.09 43.02 3.43
2138 3647 8.213518 TCTATATAGGGCCTAATACGTTTACG 57.786 38.462 18.91 0.00 46.33 3.18
2139 3648 9.962783 CATCTATATAGGGCCTAATACGTTTAC 57.037 37.037 18.91 0.00 0.00 2.01
2140 3649 9.925545 TCATCTATATAGGGCCTAATACGTTTA 57.074 33.333 18.91 3.68 0.00 2.01
2141 3650 8.834004 TCATCTATATAGGGCCTAATACGTTT 57.166 34.615 18.91 1.12 0.00 3.60
2142 3651 8.834004 TTCATCTATATAGGGCCTAATACGTT 57.166 34.615 18.91 1.94 0.00 3.99
2143 3652 8.834004 TTTCATCTATATAGGGCCTAATACGT 57.166 34.615 18.91 2.76 0.00 3.57
2144 3653 8.361139 CCTTTCATCTATATAGGGCCTAATACG 58.639 40.741 18.91 7.12 0.00 3.06
2145 3654 9.435570 TCCTTTCATCTATATAGGGCCTAATAC 57.564 37.037 18.91 0.00 0.00 1.89
2146 3655 9.661954 CTCCTTTCATCTATATAGGGCCTAATA 57.338 37.037 18.91 14.53 0.00 0.98
2147 3656 8.355256 TCTCCTTTCATCTATATAGGGCCTAAT 58.645 37.037 18.91 14.19 0.00 1.73
2148 3657 7.719424 TCTCCTTTCATCTATATAGGGCCTAA 58.281 38.462 18.91 7.61 0.00 2.69
2149 3658 7.186594 TCTCTCCTTTCATCTATATAGGGCCTA 59.813 40.741 17.16 17.16 0.00 3.93
2150 3659 6.010291 TCTCTCCTTTCATCTATATAGGGCCT 60.010 42.308 12.58 12.58 0.00 5.19
2151 3660 6.198639 TCTCTCCTTTCATCTATATAGGGCC 58.801 44.000 9.89 0.00 0.00 5.80
2152 3661 6.895204 ACTCTCTCCTTTCATCTATATAGGGC 59.105 42.308 9.89 0.00 0.00 5.19
2160 3669 9.513906 CAGTATCATACTCTCTCCTTTCATCTA 57.486 37.037 0.00 0.00 36.76 1.98
2161 3670 7.039784 GCAGTATCATACTCTCTCCTTTCATCT 60.040 40.741 0.00 0.00 36.76 2.90
2162 3671 7.090173 GCAGTATCATACTCTCTCCTTTCATC 58.910 42.308 0.00 0.00 36.76 2.92
2163 3672 6.014669 GGCAGTATCATACTCTCTCCTTTCAT 60.015 42.308 0.00 0.00 36.76 2.57
2164 3673 5.303078 GGCAGTATCATACTCTCTCCTTTCA 59.697 44.000 0.00 0.00 36.76 2.69
2165 3674 5.538433 AGGCAGTATCATACTCTCTCCTTTC 59.462 44.000 0.00 0.00 36.76 2.62
2166 3675 5.463154 AGGCAGTATCATACTCTCTCCTTT 58.537 41.667 0.00 0.00 36.76 3.11
2167 3676 5.073437 AGGCAGTATCATACTCTCTCCTT 57.927 43.478 0.00 0.00 36.76 3.36
2168 3677 4.508405 GGAGGCAGTATCATACTCTCTCCT 60.508 50.000 23.60 15.28 43.93 3.69
2169 3678 3.761752 GGAGGCAGTATCATACTCTCTCC 59.238 52.174 19.60 19.60 42.51 3.71
2170 3679 3.438781 CGGAGGCAGTATCATACTCTCTC 59.561 52.174 11.49 11.98 36.76 3.20
2171 3680 3.417101 CGGAGGCAGTATCATACTCTCT 58.583 50.000 11.49 5.22 36.76 3.10
2172 3681 2.094957 GCGGAGGCAGTATCATACTCTC 60.095 54.545 0.00 0.00 36.76 3.20
2173 3682 1.889829 GCGGAGGCAGTATCATACTCT 59.110 52.381 0.00 0.00 36.76 3.24
2174 3683 1.889829 AGCGGAGGCAGTATCATACTC 59.110 52.381 0.00 0.00 43.41 2.59
2175 3684 2.002505 AGCGGAGGCAGTATCATACT 57.997 50.000 0.00 0.00 43.41 2.12
2176 3685 2.035961 TGAAGCGGAGGCAGTATCATAC 59.964 50.000 0.00 0.00 43.41 2.39
2177 3686 2.316108 TGAAGCGGAGGCAGTATCATA 58.684 47.619 0.00 0.00 43.41 2.15
2232 3790 6.039382 GGTCTGACAAACATAGAAAAACCTGT 59.961 38.462 10.38 0.00 0.00 4.00
2251 3809 3.314080 CCGTTGCAAAACTAAAGGTCTGA 59.686 43.478 0.00 0.00 0.00 3.27
2253 3811 3.547746 TCCGTTGCAAAACTAAAGGTCT 58.452 40.909 0.00 0.00 0.00 3.85
2259 3817 3.482436 ACTCCATCCGTTGCAAAACTAA 58.518 40.909 0.00 0.00 0.00 2.24
2296 3857 0.404040 CAACAAACCAGAGGGCCCTA 59.596 55.000 28.78 0.00 37.90 3.53
2314 3875 4.208047 GCAACATATTTCAACGCAACAACA 59.792 37.500 0.00 0.00 0.00 3.33
2319 3880 3.005261 ACAGGCAACATATTTCAACGCAA 59.995 39.130 0.00 0.00 41.41 4.85
2339 3900 3.137544 GGACTGATAGAGAGAGAGGGACA 59.862 52.174 0.00 0.00 0.00 4.02
2381 3954 1.401552 CATGTGCCGACCGATTCAATT 59.598 47.619 0.00 0.00 0.00 2.32
2382 3955 1.016627 CATGTGCCGACCGATTCAAT 58.983 50.000 0.00 0.00 0.00 2.57
2416 3990 3.254657 CCTAGATCATGAGAGGAACGGTC 59.745 52.174 13.47 0.00 0.00 4.79
2419 3993 4.824537 TCTTCCTAGATCATGAGAGGAACG 59.175 45.833 23.21 19.60 41.98 3.95
2420 3994 6.723298 TTCTTCCTAGATCATGAGAGGAAC 57.277 41.667 23.21 4.36 41.98 3.62
2421 3995 9.087871 CTTATTCTTCCTAGATCATGAGAGGAA 57.912 37.037 24.47 24.47 44.08 3.36
2422 3996 7.673504 CCTTATTCTTCCTAGATCATGAGAGGA 59.326 40.741 16.22 16.22 36.28 3.71
2424 4009 7.093377 CCCCTTATTCTTCCTAGATCATGAGAG 60.093 44.444 0.09 0.00 0.00 3.20
2426 4011 6.576045 GCCCCTTATTCTTCCTAGATCATGAG 60.576 46.154 0.09 0.00 0.00 2.90
2429 4014 4.223923 CGCCCCTTATTCTTCCTAGATCAT 59.776 45.833 0.00 0.00 0.00 2.45
2436 4021 1.065418 CACACGCCCCTTATTCTTCCT 60.065 52.381 0.00 0.00 0.00 3.36
2437 4022 1.339727 ACACACGCCCCTTATTCTTCC 60.340 52.381 0.00 0.00 0.00 3.46
2438 4023 2.109425 ACACACGCCCCTTATTCTTC 57.891 50.000 0.00 0.00 0.00 2.87
2458 4045 2.047274 CGGGTCAAGTGTGCCGAT 60.047 61.111 0.00 0.00 33.58 4.18
2469 4056 1.526887 GAATGATCAGGCCGGGTCA 59.473 57.895 21.60 21.60 0.00 4.02
2473 4060 1.439353 CCAACGAATGATCAGGCCGG 61.439 60.000 15.40 0.00 0.00 6.13
2477 4064 2.880890 GGATTCCCAACGAATGATCAGG 59.119 50.000 0.09 0.00 41.47 3.86
2521 4114 4.569719 AATTCTGTTCATTACCGGACCT 57.430 40.909 9.46 0.00 0.00 3.85
2522 4115 4.142469 CCAAATTCTGTTCATTACCGGACC 60.142 45.833 9.46 0.00 0.00 4.46
2523 4116 4.457949 ACCAAATTCTGTTCATTACCGGAC 59.542 41.667 9.46 0.00 0.00 4.79
2524 4117 4.658063 ACCAAATTCTGTTCATTACCGGA 58.342 39.130 9.46 0.00 0.00 5.14
2533 4126 8.592105 TTTGATTGATGAACCAAATTCTGTTC 57.408 30.769 11.27 11.27 40.94 3.18
2537 4130 7.596248 CGACTTTTGATTGATGAACCAAATTCT 59.404 33.333 0.00 0.00 38.25 2.40
2548 4141 5.162794 TGGCAAATCGACTTTTGATTGATG 58.837 37.500 14.20 0.00 38.58 3.07
2595 4217 1.560923 CTCCGCTTGGTTATCGTGAG 58.439 55.000 0.00 0.00 0.00 3.51
2599 4221 1.766143 GCAGCTCCGCTTGGTTATCG 61.766 60.000 0.00 0.00 36.40 2.92
2600 4222 1.766143 CGCAGCTCCGCTTGGTTATC 61.766 60.000 0.00 0.00 36.40 1.75
2602 4224 2.434185 CGCAGCTCCGCTTGGTTA 60.434 61.111 0.00 0.00 36.40 2.85
2606 4228 3.300667 GAACACGCAGCTCCGCTTG 62.301 63.158 0.00 0.00 36.40 4.01
2608 4230 2.549611 CTAGAACACGCAGCTCCGCT 62.550 60.000 0.00 0.00 40.77 5.52
2609 4231 2.126071 TAGAACACGCAGCTCCGC 60.126 61.111 0.00 0.00 0.00 5.54
2610 4232 2.161486 GCTAGAACACGCAGCTCCG 61.161 63.158 0.00 0.00 32.46 4.63
2611 4233 0.390472 AAGCTAGAACACGCAGCTCC 60.390 55.000 0.00 0.00 44.70 4.70
2612 4234 2.189342 CTAAGCTAGAACACGCAGCTC 58.811 52.381 0.00 0.00 44.70 4.09
2614 4236 1.281899 CCTAAGCTAGAACACGCAGC 58.718 55.000 0.00 0.00 35.49 5.25
2615 4237 1.927895 CCCTAAGCTAGAACACGCAG 58.072 55.000 0.00 0.00 0.00 5.18
2616 4238 0.108329 GCCCTAAGCTAGAACACGCA 60.108 55.000 0.00 0.00 38.99 5.24
2617 4239 0.108329 TGCCCTAAGCTAGAACACGC 60.108 55.000 0.00 0.00 44.23 5.34
2618 4240 2.604046 ATGCCCTAAGCTAGAACACG 57.396 50.000 0.00 0.00 44.23 4.49
2619 4241 3.181478 ACGTATGCCCTAAGCTAGAACAC 60.181 47.826 0.00 0.00 44.23 3.32
2620 4242 3.028850 ACGTATGCCCTAAGCTAGAACA 58.971 45.455 0.00 0.00 44.23 3.18
2621 4243 3.729862 ACGTATGCCCTAAGCTAGAAC 57.270 47.619 0.00 0.00 44.23 3.01
2622 4244 4.439057 CAAACGTATGCCCTAAGCTAGAA 58.561 43.478 0.00 0.00 44.23 2.10
2623 4245 3.740141 GCAAACGTATGCCCTAAGCTAGA 60.740 47.826 0.00 0.00 44.23 2.43
2624 4246 2.544267 GCAAACGTATGCCCTAAGCTAG 59.456 50.000 0.00 0.00 44.23 3.42
2625 4247 2.557317 GCAAACGTATGCCCTAAGCTA 58.443 47.619 0.00 0.00 44.23 3.32
2637 4259 5.074584 ACTTTTTCTTTTGGGCAAACGTA 57.925 34.783 0.00 0.00 0.00 3.57
2641 4263 5.883115 CCCTTAACTTTTTCTTTTGGGCAAA 59.117 36.000 0.00 0.00 0.00 3.68
2645 4271 5.029807 TGCCCTTAACTTTTTCTTTTGGG 57.970 39.130 0.00 0.00 35.47 4.12
2647 4273 8.655651 TTGTATGCCCTTAACTTTTTCTTTTG 57.344 30.769 0.00 0.00 0.00 2.44
2670 4298 2.447244 TGGGCAAAGCGGTAAATTTG 57.553 45.000 0.00 0.00 39.01 2.32
2671 4299 2.416701 CGATGGGCAAAGCGGTAAATTT 60.417 45.455 0.00 0.00 0.00 1.82
2701 4330 1.150827 GTTGGGTTTTAGACGGACGG 58.849 55.000 0.00 0.00 0.00 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.