Multiple sequence alignment - TraesCS7A01G502800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G502800 chr7A 100.000 2312 0 0 1 2312 691982131 691979820 0.000000e+00 4270.0
1 TraesCS7A01G502800 chr7A 84.718 602 55 12 1178 1761 691831900 691831318 3.330000e-158 568.0
2 TraesCS7A01G502800 chr7A 91.815 281 21 2 740 1019 691944455 691944176 7.750000e-105 390.0
3 TraesCS7A01G502800 chr7A 90.361 166 16 0 1012 1177 691832162 691831997 3.870000e-53 219.0
4 TraesCS7A01G502800 chr7A 88.811 143 13 3 2170 2312 285822310 285822449 3.050000e-39 172.0
5 TraesCS7A01G502800 chr7A 85.106 141 18 3 2172 2312 27795112 27794975 8.610000e-30 141.0
6 TraesCS7A01G502800 chr7B 94.023 937 42 10 743 1667 679595865 679594931 0.000000e+00 1408.0
7 TraesCS7A01G502800 chr7B 77.103 428 90 6 231 651 678964310 678964736 8.250000e-60 241.0
8 TraesCS7A01G502800 chr7B 86.471 170 20 3 753 921 679449926 679449759 1.410000e-42 183.0
9 TraesCS7A01G502800 chr7D 89.827 521 52 1 59 578 599691372 599690852 0.000000e+00 667.0
10 TraesCS7A01G502800 chr7D 93.077 260 9 4 1175 1426 599690329 599690071 2.810000e-99 372.0
11 TraesCS7A01G502800 chr7D 81.336 434 55 13 769 1177 599526740 599526308 1.710000e-86 329.0
12 TraesCS7A01G502800 chr7D 81.844 347 31 20 1424 1763 599690011 599689690 1.760000e-66 263.0
13 TraesCS7A01G502800 chr7D 91.608 143 11 1 734 876 599690582 599690441 1.810000e-46 196.0
14 TraesCS7A01G502800 chr7D 95.575 113 3 1 630 740 599690657 599690545 1.830000e-41 180.0
15 TraesCS7A01G502800 chr7D 86.525 141 16 3 2172 2312 538352415 538352278 3.980000e-33 152.0
16 TraesCS7A01G502800 chr7D 78.680 197 27 9 1178 1370 599526208 599526023 1.450000e-22 117.0
17 TraesCS7A01G502800 chr4D 91.636 275 21 1 1910 2184 395403418 395403146 1.680000e-101 379.0
18 TraesCS7A01G502800 chr4D 86.331 139 16 3 2174 2312 63815540 63815675 5.150000e-32 148.0
19 TraesCS7A01G502800 chr2B 92.424 264 20 0 1909 2172 120234319 120234056 6.030000e-101 377.0
20 TraesCS7A01G502800 chr2B 91.386 267 23 0 1910 2176 42029560 42029826 1.310000e-97 366.0
21 TraesCS7A01G502800 chr6D 92.424 264 19 1 1910 2172 108674170 108673907 2.170000e-100 375.0
22 TraesCS7A01G502800 chr6D 85.106 141 18 3 2172 2312 28655309 28655446 8.610000e-30 141.0
23 TraesCS7A01G502800 chr1D 92.015 263 21 0 1910 2172 397751042 397751304 1.010000e-98 370.0
24 TraesCS7A01G502800 chr4B 91.985 262 21 0 1910 2171 280930923 280930662 3.630000e-98 368.0
25 TraesCS7A01G502800 chr3B 91.386 267 23 0 1910 2176 563178528 563178794 1.310000e-97 366.0
26 TraesCS7A01G502800 chr3B 91.078 269 23 1 1910 2177 480376941 480377209 1.690000e-96 363.0
27 TraesCS7A01G502800 chr3B 78.795 448 84 9 231 671 78654884 78655327 8.080000e-75 291.0
28 TraesCS7A01G502800 chr3B 86.525 141 16 3 2172 2312 42738931 42739068 3.980000e-33 152.0
29 TraesCS7A01G502800 chr5D 89.437 284 27 3 1911 2192 410323618 410323900 2.830000e-94 355.0
30 TraesCS7A01G502800 chr6A 77.358 583 101 16 59 633 608085241 608085800 1.330000e-82 316.0
31 TraesCS7A01G502800 chr6A 87.943 141 14 3 2172 2312 34032183 34032046 1.840000e-36 163.0
32 TraesCS7A01G502800 chr3D 76.603 577 96 24 59 625 147921704 147921157 4.860000e-72 281.0
33 TraesCS7A01G502800 chr3D 79.070 430 75 12 231 649 598189252 598188827 4.860000e-72 281.0
34 TraesCS7A01G502800 chr3D 77.218 417 80 9 230 638 4907172 4907581 1.790000e-56 230.0
35 TraesCS7A01G502800 chr3D 86.765 136 15 3 2172 2307 415576034 415575902 5.150000e-32 148.0
36 TraesCS7A01G502800 chr2A 78.837 430 72 11 228 650 93889416 93889833 2.930000e-69 272.0
37 TraesCS7A01G502800 chr2A 80.916 131 23 2 59 188 528164219 528164090 4.060000e-18 102.0
38 TraesCS7A01G502800 chr5A 77.885 416 79 8 231 639 547667816 547667407 1.770000e-61 246.0
39 TraesCS7A01G502800 chr5B 76.832 423 86 12 237 650 291988168 291987749 6.430000e-56 228.0
40 TraesCS7A01G502800 chr5B 75.758 165 32 7 62 221 36473631 36473470 2.460000e-10 76.8
41 TraesCS7A01G502800 chr3A 73.595 587 124 17 61 640 165092063 165092625 1.810000e-46 196.0
42 TraesCS7A01G502800 chr6B 85.106 141 17 4 2172 2312 247382212 247382348 8.610000e-30 141.0
43 TraesCS7A01G502800 chr4A 75.102 245 49 8 426 663 655169839 655170078 1.130000e-18 104.0
44 TraesCS7A01G502800 chr1B 76.882 186 38 5 245 427 629921271 629921088 1.460000e-17 100.0
45 TraesCS7A01G502800 chr1B 82.727 110 15 4 110 216 629517281 629517173 6.800000e-16 95.3
46 TraesCS7A01G502800 chr1A 81.579 114 17 4 110 220 550955148 550955036 8.800000e-15 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G502800 chr7A 691979820 691982131 2311 True 4270.0 4270 100.0000 1 2312 1 chr7A.!!$R3 2311
1 TraesCS7A01G502800 chr7A 691831318 691832162 844 True 393.5 568 87.5395 1012 1761 2 chr7A.!!$R4 749
2 TraesCS7A01G502800 chr7B 679594931 679595865 934 True 1408.0 1408 94.0230 743 1667 1 chr7B.!!$R2 924
3 TraesCS7A01G502800 chr7D 599689690 599691372 1682 True 335.6 667 90.3862 59 1763 5 chr7D.!!$R3 1704
4 TraesCS7A01G502800 chr7D 599526023 599526740 717 True 223.0 329 80.0080 769 1370 2 chr7D.!!$R2 601
5 TraesCS7A01G502800 chr6A 608085241 608085800 559 False 316.0 316 77.3580 59 633 1 chr6A.!!$F1 574
6 TraesCS7A01G502800 chr3D 147921157 147921704 547 True 281.0 281 76.6030 59 625 1 chr3D.!!$R1 566

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
971 1136 0.099968 CGTCCTCGCCGATCAAACTA 59.9 55.0 0.0 0.0 0.0 2.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1780 2149 0.322277 ACCAAGTGCAGATGAGCCTG 60.322 55.0 0.0 0.0 37.23 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.947147 TGCTTGTGCACCCGACCC 62.947 66.667 15.69 0.00 45.31 4.46
22 23 4.643387 GCTTGTGCACCCGACCCT 62.643 66.667 15.69 0.00 39.41 4.34
23 24 3.065306 CTTGTGCACCCGACCCTA 58.935 61.111 15.69 0.00 0.00 3.53
24 25 1.079127 CTTGTGCACCCGACCCTAG 60.079 63.158 15.69 0.00 0.00 3.02
25 26 2.521958 CTTGTGCACCCGACCCTAGG 62.522 65.000 15.69 0.06 0.00 3.02
37 38 1.221021 CCCTAGGGTTTCCTCGTGC 59.779 63.158 20.88 0.00 43.66 5.34
38 39 1.221021 CCTAGGGTTTCCTCGTGCC 59.779 63.158 0.00 0.00 43.66 5.01
39 40 1.265454 CCTAGGGTTTCCTCGTGCCT 61.265 60.000 0.00 0.00 43.66 4.75
40 41 0.175989 CTAGGGTTTCCTCGTGCCTC 59.824 60.000 0.00 0.00 43.66 4.70
41 42 0.252103 TAGGGTTTCCTCGTGCCTCT 60.252 55.000 0.00 0.00 43.66 3.69
42 43 1.128188 AGGGTTTCCTCGTGCCTCTT 61.128 55.000 0.00 0.00 39.80 2.85
43 44 0.955919 GGGTTTCCTCGTGCCTCTTG 60.956 60.000 0.00 0.00 0.00 3.02
44 45 1.578206 GGTTTCCTCGTGCCTCTTGC 61.578 60.000 0.00 0.00 41.77 4.01
45 46 1.302511 TTTCCTCGTGCCTCTTGCC 60.303 57.895 0.00 0.00 40.16 4.52
46 47 3.589654 TTCCTCGTGCCTCTTGCCG 62.590 63.158 0.00 0.00 40.16 5.69
80 81 1.077501 CATGGAGGCACGGTGGATT 60.078 57.895 10.60 0.00 0.00 3.01
92 93 1.201424 GGTGGATTCCGACCCTTACT 58.799 55.000 11.28 0.00 0.00 2.24
94 95 1.829222 GTGGATTCCGACCCTTACTGA 59.171 52.381 0.00 0.00 0.00 3.41
95 96 2.434702 GTGGATTCCGACCCTTACTGAT 59.565 50.000 0.00 0.00 0.00 2.90
97 98 4.283722 GTGGATTCCGACCCTTACTGATAT 59.716 45.833 0.00 0.00 0.00 1.63
166 169 1.997928 CTCAGAGATGCGAGGCGACA 61.998 60.000 0.00 0.00 0.00 4.35
167 170 1.153765 CAGAGATGCGAGGCGACAA 60.154 57.895 0.00 0.00 0.00 3.18
207 210 0.544595 AACGTTCTCCCCACCTAGCT 60.545 55.000 0.00 0.00 0.00 3.32
270 273 4.147322 CGTCGTTGGATGGCGTGC 62.147 66.667 0.00 0.00 0.00 5.34
272 275 4.365505 TCGTTGGATGGCGTGCGA 62.366 61.111 0.00 0.00 0.00 5.10
305 309 1.218230 GCGGATCTCGTGGATTCAGC 61.218 60.000 5.66 0.00 41.72 4.26
369 373 5.452623 CGTTCGTCTATGTTCATGTGTCTAG 59.547 44.000 0.00 0.00 0.00 2.43
375 379 7.201705 CGTCTATGTTCATGTGTCTAGAGGTTA 60.202 40.741 0.00 0.00 0.00 2.85
376 380 8.634444 GTCTATGTTCATGTGTCTAGAGGTTAT 58.366 37.037 0.00 0.00 0.00 1.89
390 394 7.612633 GTCTAGAGGTTATATCCTTCCGATCTT 59.387 40.741 3.81 0.00 38.02 2.40
393 397 6.435904 AGAGGTTATATCCTTCCGATCTTCTG 59.564 42.308 3.81 0.00 38.02 3.02
408 412 2.093973 TCTTCTGTTCTCTTCATCGGCC 60.094 50.000 0.00 0.00 0.00 6.13
434 443 3.090210 TGTCGTTCAGGTGGTCCTATA 57.910 47.619 0.00 0.00 43.07 1.31
453 462 1.839424 AAGGCCTTAGCATGACAACC 58.161 50.000 18.87 0.00 42.56 3.77
461 470 1.745489 GCATGACAACCTCCCGACC 60.745 63.158 0.00 0.00 0.00 4.79
462 471 1.676968 CATGACAACCTCCCGACCA 59.323 57.895 0.00 0.00 0.00 4.02
497 506 1.066858 GTTTGCCTGACTCCGATGAGA 60.067 52.381 0.00 0.00 41.42 3.27
502 511 1.133945 CCTGACTCCGATGAGAGAGGA 60.134 57.143 0.00 0.00 41.42 3.71
628 781 6.963049 ACGTTGACAGTTAATGAATAGGTC 57.037 37.500 4.34 0.00 0.00 3.85
635 788 5.104900 ACAGTTAATGAATAGGTCGGAAGCT 60.105 40.000 0.00 0.00 37.01 3.74
699 854 0.534203 TCTTCCAACCACAACGAGGC 60.534 55.000 0.00 0.00 0.00 4.70
708 863 1.066143 CCACAACGAGGCAGGATTAGT 60.066 52.381 0.00 0.00 0.00 2.24
709 864 2.615493 CCACAACGAGGCAGGATTAGTT 60.615 50.000 0.00 0.00 0.00 2.24
710 865 3.074412 CACAACGAGGCAGGATTAGTTT 58.926 45.455 0.00 0.00 0.00 2.66
711 866 4.250464 CACAACGAGGCAGGATTAGTTTA 58.750 43.478 0.00 0.00 0.00 2.01
712 867 4.330074 CACAACGAGGCAGGATTAGTTTAG 59.670 45.833 0.00 0.00 0.00 1.85
713 868 3.180891 ACGAGGCAGGATTAGTTTAGC 57.819 47.619 0.00 0.00 0.00 3.09
714 869 2.500098 ACGAGGCAGGATTAGTTTAGCA 59.500 45.455 0.00 0.00 0.00 3.49
715 870 2.866762 CGAGGCAGGATTAGTTTAGCAC 59.133 50.000 0.00 0.00 0.00 4.40
716 871 3.430929 CGAGGCAGGATTAGTTTAGCACT 60.431 47.826 0.00 0.00 39.87 4.40
717 872 4.123506 GAGGCAGGATTAGTTTAGCACTC 58.876 47.826 0.00 0.00 36.88 3.51
718 873 3.519510 AGGCAGGATTAGTTTAGCACTCA 59.480 43.478 0.00 0.00 36.88 3.41
719 874 3.623510 GGCAGGATTAGTTTAGCACTCAC 59.376 47.826 0.00 0.00 36.88 3.51
720 875 4.253685 GCAGGATTAGTTTAGCACTCACA 58.746 43.478 0.00 0.00 36.88 3.58
721 876 4.878397 GCAGGATTAGTTTAGCACTCACAT 59.122 41.667 0.00 0.00 36.88 3.21
722 877 6.049149 GCAGGATTAGTTTAGCACTCACATA 58.951 40.000 0.00 0.00 36.88 2.29
723 878 6.538742 GCAGGATTAGTTTAGCACTCACATAA 59.461 38.462 0.00 0.00 36.88 1.90
724 879 7.466050 GCAGGATTAGTTTAGCACTCACATAAC 60.466 40.741 0.00 0.00 36.88 1.89
725 880 7.011482 CAGGATTAGTTTAGCACTCACATAACC 59.989 40.741 0.00 0.00 36.88 2.85
726 881 7.048512 GGATTAGTTTAGCACTCACATAACCT 58.951 38.462 0.00 0.00 36.88 3.50
727 882 7.224949 GGATTAGTTTAGCACTCACATAACCTC 59.775 40.741 0.00 0.00 36.88 3.85
728 883 5.483685 AGTTTAGCACTCACATAACCTCA 57.516 39.130 0.00 0.00 0.00 3.86
729 884 6.054860 AGTTTAGCACTCACATAACCTCAT 57.945 37.500 0.00 0.00 0.00 2.90
730 885 6.109359 AGTTTAGCACTCACATAACCTCATC 58.891 40.000 0.00 0.00 0.00 2.92
731 886 5.939764 TTAGCACTCACATAACCTCATCT 57.060 39.130 0.00 0.00 0.00 2.90
732 887 4.833478 AGCACTCACATAACCTCATCTT 57.167 40.909 0.00 0.00 0.00 2.40
733 888 4.511527 AGCACTCACATAACCTCATCTTG 58.488 43.478 0.00 0.00 0.00 3.02
734 889 4.223700 AGCACTCACATAACCTCATCTTGA 59.776 41.667 0.00 0.00 0.00 3.02
735 890 5.104610 AGCACTCACATAACCTCATCTTGAT 60.105 40.000 0.00 0.00 0.00 2.57
736 891 5.587844 GCACTCACATAACCTCATCTTGATT 59.412 40.000 0.00 0.00 0.00 2.57
737 892 6.763135 GCACTCACATAACCTCATCTTGATTA 59.237 38.462 0.00 0.00 0.00 1.75
738 893 7.280876 GCACTCACATAACCTCATCTTGATTAA 59.719 37.037 0.00 0.00 0.00 1.40
739 894 9.166173 CACTCACATAACCTCATCTTGATTAAA 57.834 33.333 0.00 0.00 0.00 1.52
761 916 7.944729 AAATTTAGCACTCACATAACCTCAT 57.055 32.000 0.00 0.00 0.00 2.90
765 920 5.939764 AGCACTCACATAACCTCATCTTA 57.060 39.130 0.00 0.00 0.00 2.10
767 922 6.109359 AGCACTCACATAACCTCATCTTAAC 58.891 40.000 0.00 0.00 0.00 2.01
822 979 3.591527 TGGTCCTGGAGTTAATCACCATT 59.408 43.478 0.00 0.00 36.30 3.16
971 1136 0.099968 CGTCCTCGCCGATCAAACTA 59.900 55.000 0.00 0.00 0.00 2.24
979 1157 2.223829 CGCCGATCAAACTACTCCTGAT 60.224 50.000 0.00 0.00 32.49 2.90
1095 1276 2.821366 CGCGGCCTTCTTCAGCAT 60.821 61.111 0.00 0.00 0.00 3.79
1126 1307 1.201429 ATCGCCTCTCCAGGGTGTTT 61.201 55.000 0.00 0.00 40.75 2.83
1138 1319 2.207229 GGTGTTTCTGGTTGGGCCC 61.207 63.158 17.59 17.59 36.04 5.80
1148 1329 1.077787 GTTGGGCCCACGATCATGA 60.078 57.895 28.70 3.51 0.00 3.07
1363 1656 1.147557 CGCGAGTGTGCATGCTATCA 61.148 55.000 20.33 12.45 34.15 2.15
1401 1695 9.546428 TGATTATCTTCTTTCGCAGATTGAATA 57.454 29.630 0.00 0.00 35.04 1.75
1446 1802 6.554419 TGTATAAGTCATGCATTGCTTTGTC 58.446 36.000 15.16 5.87 0.00 3.18
1469 1825 1.112113 GTCAGGGGATGAGCGAGTTA 58.888 55.000 0.00 0.00 39.07 2.24
1470 1826 1.480954 GTCAGGGGATGAGCGAGTTAA 59.519 52.381 0.00 0.00 39.07 2.01
1471 1827 2.093658 GTCAGGGGATGAGCGAGTTAAA 60.094 50.000 0.00 0.00 39.07 1.52
1543 1907 3.152341 ACAGTGCAAAGAGAAATGAGGG 58.848 45.455 0.00 0.00 0.00 4.30
1601 1965 9.082313 CATAATTAAATACTGGAAATGCTCCCT 57.918 33.333 0.00 0.00 44.69 4.20
1671 2036 6.545666 TGTTTATGTAGATTGATCCCGCAAAT 59.454 34.615 0.00 0.00 0.00 2.32
1676 2041 3.889815 AGATTGATCCCGCAAATGAGAA 58.110 40.909 0.00 0.00 0.00 2.87
1692 2057 2.369860 TGAGAAGGTGATCACTTGCAGT 59.630 45.455 24.50 2.54 0.00 4.40
1716 2081 3.435566 CGAATTCTGCGCTAGTAGACAA 58.564 45.455 9.73 0.00 38.82 3.18
1725 2091 3.619038 GCGCTAGTAGACAAGCTCAAAAT 59.381 43.478 0.00 0.00 36.56 1.82
1726 2092 4.260011 GCGCTAGTAGACAAGCTCAAAATC 60.260 45.833 0.00 0.00 36.56 2.17
1739 2105 5.810525 AGCTCAAAATCGATATTGTTTCCG 58.189 37.500 0.00 0.00 0.00 4.30
1766 2135 6.910536 GACAAGAGGTCAAATGACGAATAT 57.089 37.500 7.42 0.00 46.19 1.28
1767 2136 7.308782 GACAAGAGGTCAAATGACGAATATT 57.691 36.000 7.42 0.00 46.19 1.28
1768 2137 7.308782 ACAAGAGGTCAAATGACGAATATTC 57.691 36.000 5.30 5.30 45.65 1.75
1769 2138 6.878923 ACAAGAGGTCAAATGACGAATATTCA 59.121 34.615 15.57 0.00 45.65 2.57
1770 2139 7.554118 ACAAGAGGTCAAATGACGAATATTCAT 59.446 33.333 15.57 0.00 45.65 2.57
1771 2140 8.400947 CAAGAGGTCAAATGACGAATATTCATT 58.599 33.333 15.57 5.86 45.65 2.57
1772 2141 7.923888 AGAGGTCAAATGACGAATATTCATTG 58.076 34.615 15.57 10.96 45.65 2.82
1773 2142 6.498304 AGGTCAAATGACGAATATTCATTGC 58.502 36.000 15.57 2.27 45.65 3.56
1774 2143 5.687285 GGTCAAATGACGAATATTCATTGCC 59.313 40.000 15.57 11.71 45.65 4.52
1775 2144 5.396362 GTCAAATGACGAATATTCATTGCCG 59.604 40.000 15.57 3.57 41.81 5.69
1776 2145 5.295540 TCAAATGACGAATATTCATTGCCGA 59.704 36.000 15.57 4.54 41.81 5.54
1777 2146 4.997905 ATGACGAATATTCATTGCCGAG 57.002 40.909 15.57 0.00 28.83 4.63
1778 2147 3.130633 TGACGAATATTCATTGCCGAGG 58.869 45.455 15.57 0.00 0.00 4.63
1779 2148 1.873591 ACGAATATTCATTGCCGAGGC 59.126 47.619 15.57 7.26 42.35 4.70
1780 2149 1.197721 CGAATATTCATTGCCGAGGCC 59.802 52.381 15.57 0.00 41.09 5.19
1781 2150 2.229792 GAATATTCATTGCCGAGGCCA 58.770 47.619 12.05 0.08 41.09 5.36
1782 2151 1.901591 ATATTCATTGCCGAGGCCAG 58.098 50.000 12.05 0.00 41.09 4.85
1783 2152 0.179020 TATTCATTGCCGAGGCCAGG 60.179 55.000 12.05 9.58 41.09 4.45
1790 2159 3.160047 CCGAGGCCAGGCTCATCT 61.160 66.667 19.77 0.00 0.00 2.90
1791 2160 2.108566 CGAGGCCAGGCTCATCTG 59.891 66.667 19.77 1.26 34.70 2.90
1792 2161 2.203181 GAGGCCAGGCTCATCTGC 60.203 66.667 12.43 0.00 33.64 4.26
1793 2162 3.013327 AGGCCAGGCTCATCTGCA 61.013 61.111 12.43 0.00 33.64 4.41
1794 2163 2.827642 GGCCAGGCTCATCTGCAC 60.828 66.667 12.43 0.00 33.64 4.57
1795 2164 2.271497 GCCAGGCTCATCTGCACT 59.729 61.111 3.29 0.00 33.64 4.40
1796 2165 1.378250 GCCAGGCTCATCTGCACTT 60.378 57.895 3.29 0.00 33.64 3.16
1797 2166 1.654954 GCCAGGCTCATCTGCACTTG 61.655 60.000 3.29 0.00 33.64 3.16
1798 2167 1.030488 CCAGGCTCATCTGCACTTGG 61.030 60.000 0.00 0.00 33.64 3.61
1799 2168 0.322277 CAGGCTCATCTGCACTTGGT 60.322 55.000 0.00 0.00 34.04 3.67
1800 2169 0.403271 AGGCTCATCTGCACTTGGTT 59.597 50.000 0.00 0.00 34.04 3.67
1801 2170 0.524862 GGCTCATCTGCACTTGGTTG 59.475 55.000 0.00 0.00 34.04 3.77
1802 2171 1.527034 GCTCATCTGCACTTGGTTGA 58.473 50.000 0.00 0.00 0.00 3.18
1803 2172 1.467734 GCTCATCTGCACTTGGTTGAG 59.532 52.381 7.18 7.18 34.35 3.02
1804 2173 2.873245 GCTCATCTGCACTTGGTTGAGA 60.873 50.000 13.22 0.00 33.56 3.27
1805 2174 3.405831 CTCATCTGCACTTGGTTGAGAA 58.594 45.455 6.07 0.00 33.56 2.87
1806 2175 3.817084 CTCATCTGCACTTGGTTGAGAAA 59.183 43.478 6.07 0.00 33.56 2.52
1807 2176 4.206375 TCATCTGCACTTGGTTGAGAAAA 58.794 39.130 0.00 0.00 0.00 2.29
1808 2177 4.644234 TCATCTGCACTTGGTTGAGAAAAA 59.356 37.500 0.00 0.00 0.00 1.94
1860 2229 6.712179 AAATCCAATTTGTTTTTGCATGGT 57.288 29.167 0.00 0.00 0.00 3.55
1861 2230 7.814264 AAATCCAATTTGTTTTTGCATGGTA 57.186 28.000 0.00 0.00 0.00 3.25
1862 2231 6.799926 ATCCAATTTGTTTTTGCATGGTAC 57.200 33.333 0.00 0.00 0.00 3.34
1876 2245 1.444836 TGGTACATAACTTGGTGCGC 58.555 50.000 0.00 0.00 0.00 6.09
1877 2246 1.270893 TGGTACATAACTTGGTGCGCA 60.271 47.619 5.66 5.66 0.00 6.09
1878 2247 1.807742 GGTACATAACTTGGTGCGCAA 59.192 47.619 14.00 0.00 0.00 4.85
1879 2248 2.159572 GGTACATAACTTGGTGCGCAAG 60.160 50.000 14.00 9.26 43.44 4.01
1880 2249 0.881118 ACATAACTTGGTGCGCAAGG 59.119 50.000 14.00 0.00 34.20 3.61
1881 2250 0.881118 CATAACTTGGTGCGCAAGGT 59.119 50.000 14.00 7.70 34.20 3.50
1882 2251 0.881118 ATAACTTGGTGCGCAAGGTG 59.119 50.000 14.00 5.87 34.20 4.00
1883 2252 0.464735 TAACTTGGTGCGCAAGGTGT 60.465 50.000 14.00 6.60 34.20 4.16
1884 2253 2.003658 AACTTGGTGCGCAAGGTGTG 62.004 55.000 14.00 3.02 34.20 3.82
1896 2265 3.731652 CAAGGTGTGCTCCAAATTTCA 57.268 42.857 0.00 0.00 0.00 2.69
1897 2266 3.645884 CAAGGTGTGCTCCAAATTTCAG 58.354 45.455 0.00 0.00 0.00 3.02
1898 2267 3.228188 AGGTGTGCTCCAAATTTCAGA 57.772 42.857 0.00 0.00 0.00 3.27
1899 2268 3.771216 AGGTGTGCTCCAAATTTCAGAT 58.229 40.909 0.00 0.00 0.00 2.90
1900 2269 3.760684 AGGTGTGCTCCAAATTTCAGATC 59.239 43.478 0.00 0.00 0.00 2.75
1901 2270 3.507233 GGTGTGCTCCAAATTTCAGATCA 59.493 43.478 0.00 0.00 0.00 2.92
1902 2271 4.159135 GGTGTGCTCCAAATTTCAGATCAT 59.841 41.667 0.00 0.00 0.00 2.45
1903 2272 5.337009 GGTGTGCTCCAAATTTCAGATCATT 60.337 40.000 0.00 0.00 0.00 2.57
1904 2273 5.575606 GTGTGCTCCAAATTTCAGATCATTG 59.424 40.000 0.00 0.00 0.00 2.82
1905 2274 5.107133 GTGCTCCAAATTTCAGATCATTGG 58.893 41.667 0.00 0.00 41.47 3.16
1906 2275 4.160814 TGCTCCAAATTTCAGATCATTGGG 59.839 41.667 0.00 0.00 40.69 4.12
1907 2276 4.403432 GCTCCAAATTTCAGATCATTGGGA 59.597 41.667 0.00 0.00 40.69 4.37
1908 2277 5.680665 GCTCCAAATTTCAGATCATTGGGAC 60.681 44.000 0.00 0.00 40.69 4.46
1909 2278 5.331906 TCCAAATTTCAGATCATTGGGACA 58.668 37.500 0.00 0.00 40.69 4.02
1910 2279 5.959594 TCCAAATTTCAGATCATTGGGACAT 59.040 36.000 0.00 0.00 40.69 3.06
1911 2280 7.124721 TCCAAATTTCAGATCATTGGGACATA 58.875 34.615 0.00 0.00 40.69 2.29
1912 2281 7.068593 TCCAAATTTCAGATCATTGGGACATAC 59.931 37.037 0.00 0.00 40.69 2.39
1913 2282 7.069085 CCAAATTTCAGATCATTGGGACATACT 59.931 37.037 0.00 0.00 39.30 2.12
1914 2283 7.814264 AATTTCAGATCATTGGGACATACTC 57.186 36.000 0.00 0.00 39.30 2.59
1915 2284 4.963318 TCAGATCATTGGGACATACTCC 57.037 45.455 0.00 0.00 39.30 3.85
1924 2293 0.751452 GGACATACTCCCTCCGTTCC 59.249 60.000 0.00 0.00 31.83 3.62
1925 2294 1.481871 GACATACTCCCTCCGTTCCA 58.518 55.000 0.00 0.00 0.00 3.53
1926 2295 1.409427 GACATACTCCCTCCGTTCCAG 59.591 57.143 0.00 0.00 0.00 3.86
1927 2296 1.006758 ACATACTCCCTCCGTTCCAGA 59.993 52.381 0.00 0.00 0.00 3.86
1928 2297 2.108168 CATACTCCCTCCGTTCCAGAA 58.892 52.381 0.00 0.00 0.00 3.02
1929 2298 2.544844 TACTCCCTCCGTTCCAGAAT 57.455 50.000 0.00 0.00 0.00 2.40
1930 2299 2.544844 ACTCCCTCCGTTCCAGAATA 57.455 50.000 0.00 0.00 0.00 1.75
1931 2300 3.047695 ACTCCCTCCGTTCCAGAATAT 57.952 47.619 0.00 0.00 0.00 1.28
1932 2301 4.194678 ACTCCCTCCGTTCCAGAATATA 57.805 45.455 0.00 0.00 0.00 0.86
1933 2302 4.553678 ACTCCCTCCGTTCCAGAATATAA 58.446 43.478 0.00 0.00 0.00 0.98
1934 2303 4.589374 ACTCCCTCCGTTCCAGAATATAAG 59.411 45.833 0.00 0.00 0.00 1.73
1935 2304 3.901844 TCCCTCCGTTCCAGAATATAAGG 59.098 47.826 0.00 0.00 0.00 2.69
1936 2305 3.646637 CCCTCCGTTCCAGAATATAAGGT 59.353 47.826 0.00 0.00 0.00 3.50
1937 2306 4.503296 CCCTCCGTTCCAGAATATAAGGTG 60.503 50.000 0.00 0.00 0.00 4.00
1938 2307 4.101119 CCTCCGTTCCAGAATATAAGGTGT 59.899 45.833 0.00 0.00 0.00 4.16
1939 2308 5.303589 CCTCCGTTCCAGAATATAAGGTGTA 59.696 44.000 0.00 0.00 0.00 2.90
1940 2309 6.014499 CCTCCGTTCCAGAATATAAGGTGTAT 60.014 42.308 0.00 0.00 0.00 2.29
1941 2310 7.177921 CCTCCGTTCCAGAATATAAGGTGTATA 59.822 40.741 0.00 0.00 0.00 1.47
1942 2311 8.118976 TCCGTTCCAGAATATAAGGTGTATAG 57.881 38.462 0.00 0.00 0.00 1.31
1943 2312 7.946219 TCCGTTCCAGAATATAAGGTGTATAGA 59.054 37.037 0.00 0.00 0.00 1.98
1944 2313 8.750298 CCGTTCCAGAATATAAGGTGTATAGAT 58.250 37.037 0.00 0.00 0.00 1.98
1957 2326 8.699283 AAGGTGTATAGATTTTCGTGTAAGTC 57.301 34.615 0.00 0.00 0.00 3.01
1958 2327 7.833786 AGGTGTATAGATTTTCGTGTAAGTCA 58.166 34.615 0.00 0.00 0.00 3.41
1959 2328 8.308931 AGGTGTATAGATTTTCGTGTAAGTCAA 58.691 33.333 0.00 0.00 0.00 3.18
1960 2329 8.378421 GGTGTATAGATTTTCGTGTAAGTCAAC 58.622 37.037 0.00 0.00 0.00 3.18
1961 2330 8.918658 GTGTATAGATTTTCGTGTAAGTCAACA 58.081 33.333 0.00 0.00 0.00 3.33
1962 2331 9.478768 TGTATAGATTTTCGTGTAAGTCAACAA 57.521 29.630 0.00 0.00 0.00 2.83
1971 2340 9.790389 TTTCGTGTAAGTCAACAATTTAAATGT 57.210 25.926 0.39 0.00 0.00 2.71
1972 2341 9.790389 TTCGTGTAAGTCAACAATTTAAATGTT 57.210 25.926 0.39 5.93 41.50 2.71
1973 2342 9.790389 TCGTGTAAGTCAACAATTTAAATGTTT 57.210 25.926 0.39 0.00 38.90 2.83
1974 2343 9.828220 CGTGTAAGTCAACAATTTAAATGTTTG 57.172 29.630 0.39 8.31 38.90 2.93
1979 2348 9.442047 AAGTCAACAATTTAAATGTTTGACCAA 57.558 25.926 29.87 11.27 38.90 3.67
1980 2349 9.097257 AGTCAACAATTTAAATGTTTGACCAAG 57.903 29.630 29.87 14.03 38.90 3.61
1981 2350 9.092876 GTCAACAATTTAAATGTTTGACCAAGA 57.907 29.630 26.80 13.35 38.90 3.02
1982 2351 9.829507 TCAACAATTTAAATGTTTGACCAAGAT 57.170 25.926 15.77 0.00 38.90 2.40
2017 2386 8.807948 AAATAACAACATCTGCAATACCTAGT 57.192 30.769 0.00 0.00 0.00 2.57
2018 2387 9.899661 AAATAACAACATCTGCAATACCTAGTA 57.100 29.630 0.00 0.00 0.00 1.82
2019 2388 9.547753 AATAACAACATCTGCAATACCTAGTAG 57.452 33.333 0.00 0.00 0.00 2.57
2020 2389 6.791867 ACAACATCTGCAATACCTAGTAGA 57.208 37.500 0.00 0.00 0.00 2.59
2021 2390 7.366847 ACAACATCTGCAATACCTAGTAGAT 57.633 36.000 0.00 0.00 37.63 1.98
2022 2391 8.478775 ACAACATCTGCAATACCTAGTAGATA 57.521 34.615 0.00 0.00 35.44 1.98
2023 2392 8.924303 ACAACATCTGCAATACCTAGTAGATAA 58.076 33.333 0.00 0.00 35.44 1.75
2024 2393 9.764363 CAACATCTGCAATACCTAGTAGATAAA 57.236 33.333 0.00 0.00 35.44 1.40
2056 2425 9.865321 AAACTACTTTTCATGATGGATCAAATG 57.135 29.630 0.00 0.00 40.69 2.32
2057 2426 8.812513 ACTACTTTTCATGATGGATCAAATGA 57.187 30.769 0.00 0.00 40.69 2.57
2058 2427 9.417561 ACTACTTTTCATGATGGATCAAATGAT 57.582 29.630 0.00 0.00 40.69 2.45
2114 2483 7.908193 TTTCTAAAAACTCGATCAAACTTGC 57.092 32.000 0.00 0.00 0.00 4.01
2115 2484 6.612247 TCTAAAAACTCGATCAAACTTGCA 57.388 33.333 0.00 0.00 0.00 4.08
2116 2485 7.202016 TCTAAAAACTCGATCAAACTTGCAT 57.798 32.000 0.00 0.00 0.00 3.96
2117 2486 7.648142 TCTAAAAACTCGATCAAACTTGCATT 58.352 30.769 0.00 0.00 0.00 3.56
2118 2487 6.753897 AAAAACTCGATCAAACTTGCATTC 57.246 33.333 0.00 0.00 0.00 2.67
2119 2488 3.729526 ACTCGATCAAACTTGCATTCG 57.270 42.857 0.00 0.00 0.00 3.34
2120 2489 3.067106 ACTCGATCAAACTTGCATTCGT 58.933 40.909 0.00 0.00 0.00 3.85
2121 2490 3.498397 ACTCGATCAAACTTGCATTCGTT 59.502 39.130 0.00 0.00 0.00 3.85
2122 2491 4.024048 ACTCGATCAAACTTGCATTCGTTT 60.024 37.500 0.00 0.00 33.92 3.60
2123 2492 4.218265 TCGATCAAACTTGCATTCGTTTG 58.782 39.130 21.32 21.32 46.90 2.93
2129 2498 4.900635 AACTTGCATTCGTTTGACTTCT 57.099 36.364 0.00 0.00 0.00 2.85
2130 2499 4.474226 ACTTGCATTCGTTTGACTTCTC 57.526 40.909 0.00 0.00 0.00 2.87
2131 2500 3.876914 ACTTGCATTCGTTTGACTTCTCA 59.123 39.130 0.00 0.00 0.00 3.27
2132 2501 4.335315 ACTTGCATTCGTTTGACTTCTCAA 59.665 37.500 0.00 0.00 34.39 3.02
2133 2502 4.891627 TGCATTCGTTTGACTTCTCAAA 57.108 36.364 0.00 0.00 42.93 2.69
2134 2503 5.242069 TGCATTCGTTTGACTTCTCAAAA 57.758 34.783 0.00 0.00 45.89 2.44
2135 2504 5.645624 TGCATTCGTTTGACTTCTCAAAAA 58.354 33.333 0.00 0.00 45.89 1.94
2165 2534 8.641498 ATGCACCTTATATAAAAGAATGGAGG 57.359 34.615 0.00 0.00 0.00 4.30
2166 2535 7.004086 TGCACCTTATATAAAAGAATGGAGGG 58.996 38.462 0.00 0.00 0.00 4.30
2167 2536 7.147213 TGCACCTTATATAAAAGAATGGAGGGA 60.147 37.037 0.00 0.00 0.00 4.20
2168 2537 7.391833 GCACCTTATATAAAAGAATGGAGGGAG 59.608 40.741 0.00 0.00 0.00 4.30
2169 2538 8.440771 CACCTTATATAAAAGAATGGAGGGAGT 58.559 37.037 0.00 0.00 0.00 3.85
2170 2539 9.684702 ACCTTATATAAAAGAATGGAGGGAGTA 57.315 33.333 0.00 0.00 0.00 2.59
2175 2544 7.698163 ATAAAAGAATGGAGGGAGTATGAGT 57.302 36.000 0.00 0.00 0.00 3.41
2176 2545 8.798975 ATAAAAGAATGGAGGGAGTATGAGTA 57.201 34.615 0.00 0.00 0.00 2.59
2177 2546 6.739331 AAAGAATGGAGGGAGTATGAGTAG 57.261 41.667 0.00 0.00 0.00 2.57
2178 2547 4.156477 AGAATGGAGGGAGTATGAGTAGC 58.844 47.826 0.00 0.00 0.00 3.58
2179 2548 3.913370 ATGGAGGGAGTATGAGTAGCT 57.087 47.619 0.00 0.00 0.00 3.32
2180 2549 5.075205 AGAATGGAGGGAGTATGAGTAGCTA 59.925 44.000 0.00 0.00 0.00 3.32
2181 2550 5.544441 ATGGAGGGAGTATGAGTAGCTAT 57.456 43.478 0.00 0.00 0.00 2.97
2182 2551 4.924625 TGGAGGGAGTATGAGTAGCTATC 58.075 47.826 0.00 0.00 0.00 2.08
2183 2552 4.354087 TGGAGGGAGTATGAGTAGCTATCA 59.646 45.833 0.00 2.55 0.00 2.15
2184 2553 4.947388 GGAGGGAGTATGAGTAGCTATCAG 59.053 50.000 0.00 0.00 0.00 2.90
2185 2554 4.340617 AGGGAGTATGAGTAGCTATCAGC 58.659 47.826 0.00 0.69 42.84 4.26
2186 2555 4.082845 GGGAGTATGAGTAGCTATCAGCA 58.917 47.826 0.00 0.00 45.56 4.41
2187 2556 4.524714 GGGAGTATGAGTAGCTATCAGCAA 59.475 45.833 0.00 0.00 45.56 3.91
2188 2557 5.011125 GGGAGTATGAGTAGCTATCAGCAAA 59.989 44.000 0.00 0.00 45.56 3.68
2189 2558 6.463049 GGGAGTATGAGTAGCTATCAGCAAAA 60.463 42.308 0.00 0.00 45.56 2.44
2190 2559 6.986817 GGAGTATGAGTAGCTATCAGCAAAAA 59.013 38.462 0.00 0.00 45.56 1.94
2211 2580 6.432403 AAAAGATAAATTGGGCCAAGAACA 57.568 33.333 25.16 9.90 0.00 3.18
2212 2581 6.432403 AAAGATAAATTGGGCCAAGAACAA 57.568 33.333 25.16 8.44 0.00 2.83
2213 2582 6.625532 AAGATAAATTGGGCCAAGAACAAT 57.374 33.333 25.16 12.77 36.46 2.71
2214 2583 7.732222 AAGATAAATTGGGCCAAGAACAATA 57.268 32.000 25.16 10.77 34.00 1.90
2215 2584 7.112452 AGATAAATTGGGCCAAGAACAATAC 57.888 36.000 25.16 10.49 34.00 1.89
2216 2585 6.667414 AGATAAATTGGGCCAAGAACAATACA 59.333 34.615 25.16 0.00 34.00 2.29
2217 2586 5.760484 AAATTGGGCCAAGAACAATACAT 57.240 34.783 25.16 0.00 34.00 2.29
2218 2587 6.865834 AAATTGGGCCAAGAACAATACATA 57.134 33.333 25.16 0.00 34.00 2.29
2219 2588 6.865834 AATTGGGCCAAGAACAATACATAA 57.134 33.333 25.16 0.00 34.00 1.90
2220 2589 6.865834 ATTGGGCCAAGAACAATACATAAA 57.134 33.333 25.16 0.00 33.40 1.40
2221 2590 5.652994 TGGGCCAAGAACAATACATAAAC 57.347 39.130 2.13 0.00 0.00 2.01
2222 2591 5.080337 TGGGCCAAGAACAATACATAAACA 58.920 37.500 2.13 0.00 0.00 2.83
2223 2592 5.184864 TGGGCCAAGAACAATACATAAACAG 59.815 40.000 2.13 0.00 0.00 3.16
2224 2593 5.185056 GGGCCAAGAACAATACATAAACAGT 59.815 40.000 4.39 0.00 0.00 3.55
2225 2594 6.376018 GGGCCAAGAACAATACATAAACAGTA 59.624 38.462 4.39 0.00 0.00 2.74
2226 2595 7.094118 GGGCCAAGAACAATACATAAACAGTAA 60.094 37.037 4.39 0.00 0.00 2.24
2227 2596 8.301002 GGCCAAGAACAATACATAAACAGTAAA 58.699 33.333 0.00 0.00 0.00 2.01
2228 2597 9.341899 GCCAAGAACAATACATAAACAGTAAAG 57.658 33.333 0.00 0.00 0.00 1.85
2277 2646 3.610040 TTTTGCCGAGAGCTAATCAGA 57.390 42.857 0.00 0.00 44.23 3.27
2278 2647 3.827008 TTTGCCGAGAGCTAATCAGAT 57.173 42.857 0.00 0.00 44.23 2.90
2279 2648 2.808523 TGCCGAGAGCTAATCAGATG 57.191 50.000 0.00 0.00 44.23 2.90
2280 2649 2.034878 TGCCGAGAGCTAATCAGATGT 58.965 47.619 0.00 0.00 44.23 3.06
2281 2650 2.035193 TGCCGAGAGCTAATCAGATGTC 59.965 50.000 0.00 0.00 44.23 3.06
2282 2651 2.295909 GCCGAGAGCTAATCAGATGTCT 59.704 50.000 0.00 0.00 38.99 3.41
2283 2652 3.504134 GCCGAGAGCTAATCAGATGTCTA 59.496 47.826 0.00 0.00 38.99 2.59
2284 2653 4.022762 GCCGAGAGCTAATCAGATGTCTAA 60.023 45.833 0.00 0.00 38.99 2.10
2285 2654 5.508153 GCCGAGAGCTAATCAGATGTCTAAA 60.508 44.000 0.00 0.00 38.99 1.85
2286 2655 6.686630 CCGAGAGCTAATCAGATGTCTAAAT 58.313 40.000 0.00 0.00 28.63 1.40
2287 2656 6.585702 CCGAGAGCTAATCAGATGTCTAAATG 59.414 42.308 0.00 0.00 28.63 2.32
2288 2657 7.366513 CGAGAGCTAATCAGATGTCTAAATGA 58.633 38.462 0.00 0.00 28.63 2.57
2289 2658 8.028354 CGAGAGCTAATCAGATGTCTAAATGAT 58.972 37.037 0.00 0.00 33.91 2.45
2290 2659 9.357652 GAGAGCTAATCAGATGTCTAAATGATC 57.642 37.037 0.00 0.00 31.31 2.92
2291 2660 9.092338 AGAGCTAATCAGATGTCTAAATGATCT 57.908 33.333 0.00 0.00 31.31 2.75
2292 2661 9.142515 GAGCTAATCAGATGTCTAAATGATCTG 57.857 37.037 0.00 0.00 43.01 2.90
2300 2669 9.731819 CAGATGTCTAAATGATCTGAAATTTGG 57.268 33.333 0.00 8.31 43.94 3.28
2301 2670 9.690913 AGATGTCTAAATGATCTGAAATTTGGA 57.309 29.630 0.00 9.60 32.77 3.53
2302 2671 9.947669 GATGTCTAAATGATCTGAAATTTGGAG 57.052 33.333 12.40 0.00 34.98 3.86
2303 2672 7.765307 TGTCTAAATGATCTGAAATTTGGAGC 58.235 34.615 12.40 0.00 34.98 4.70
2304 2673 6.909357 GTCTAAATGATCTGAAATTTGGAGCG 59.091 38.462 12.40 0.00 34.98 5.03
2305 2674 4.644103 AATGATCTGAAATTTGGAGCGG 57.356 40.909 0.00 0.00 0.00 5.52
2306 2675 3.348647 TGATCTGAAATTTGGAGCGGA 57.651 42.857 0.00 0.00 0.00 5.54
2307 2676 3.009723 TGATCTGAAATTTGGAGCGGAC 58.990 45.455 0.00 0.00 0.00 4.79
2308 2677 1.821216 TCTGAAATTTGGAGCGGACC 58.179 50.000 0.00 0.00 0.00 4.46
2309 2678 1.351017 TCTGAAATTTGGAGCGGACCT 59.649 47.619 0.00 0.00 0.00 3.85
2310 2679 1.740025 CTGAAATTTGGAGCGGACCTC 59.260 52.381 0.00 0.00 39.98 3.85
2311 2680 1.073125 TGAAATTTGGAGCGGACCTCA 59.927 47.619 0.00 0.00 42.62 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 3.248446 TAGGGTCGGGTGCACAAGC 62.248 63.158 20.43 12.50 42.57 4.01
6 7 1.079127 CTAGGGTCGGGTGCACAAG 60.079 63.158 20.43 11.83 0.00 3.16
7 8 2.589157 CCTAGGGTCGGGTGCACAA 61.589 63.158 20.43 0.00 0.00 3.33
8 9 3.000819 CCTAGGGTCGGGTGCACA 61.001 66.667 20.43 0.00 0.00 4.57
9 10 3.782443 CCCTAGGGTCGGGTGCAC 61.782 72.222 20.88 8.80 36.91 4.57
19 20 1.221021 GCACGAGGAAACCCTAGGG 59.779 63.158 27.36 27.36 42.03 3.53
20 21 1.221021 GGCACGAGGAAACCCTAGG 59.779 63.158 0.06 0.06 33.25 3.02
21 22 0.175989 GAGGCACGAGGAAACCCTAG 59.824 60.000 0.00 0.00 33.25 3.02
22 23 0.252103 AGAGGCACGAGGAAACCCTA 60.252 55.000 0.00 0.00 33.25 3.53
23 24 1.128188 AAGAGGCACGAGGAAACCCT 61.128 55.000 0.00 0.00 36.57 4.34
24 25 0.955919 CAAGAGGCACGAGGAAACCC 60.956 60.000 0.00 0.00 0.00 4.11
25 26 1.578206 GCAAGAGGCACGAGGAAACC 61.578 60.000 0.00 0.00 43.97 3.27
26 27 1.869690 GCAAGAGGCACGAGGAAAC 59.130 57.895 0.00 0.00 43.97 2.78
27 28 4.379174 GCAAGAGGCACGAGGAAA 57.621 55.556 0.00 0.00 43.97 3.13
52 53 4.864334 CCTCCATGGTCCGGCAGC 62.864 72.222 12.58 0.00 0.00 5.25
53 54 4.864334 GCCTCCATGGTCCGGCAG 62.864 72.222 26.53 11.86 42.06 4.85
56 57 4.838152 CGTGCCTCCATGGTCCGG 62.838 72.222 12.58 11.94 38.35 5.14
57 58 4.838152 CCGTGCCTCCATGGTCCG 62.838 72.222 12.58 7.83 42.18 4.79
80 81 3.497332 CCTCATATCAGTAAGGGTCGGA 58.503 50.000 0.00 0.00 0.00 4.55
166 169 6.918569 CGTTATTCCATCTTCAGAGATACGTT 59.081 38.462 0.00 0.00 40.67 3.99
167 170 6.039493 ACGTTATTCCATCTTCAGAGATACGT 59.961 38.462 0.00 0.00 41.55 3.57
221 224 2.806237 GGGACGGAGGTTCTAGCG 59.194 66.667 0.00 0.00 0.00 4.26
243 246 0.530744 TCCAACGACGCTAGAAGCAT 59.469 50.000 0.00 0.00 42.58 3.79
272 275 0.541863 ATCCGCCGGAGACAAATCTT 59.458 50.000 13.12 0.00 34.34 2.40
305 309 2.507484 TCCACTGAAGACAAATGCCAG 58.493 47.619 0.00 0.00 0.00 4.85
339 343 6.252655 CACATGAACATAGACGAACGAATACA 59.747 38.462 0.00 0.00 0.00 2.29
342 346 5.168569 ACACATGAACATAGACGAACGAAT 58.831 37.500 0.00 0.00 0.00 3.34
369 373 6.209788 ACAGAAGATCGGAAGGATATAACCTC 59.790 42.308 1.42 0.00 39.62 3.85
375 379 6.074648 AGAGAACAGAAGATCGGAAGGATAT 58.925 40.000 0.00 0.00 34.82 1.63
376 380 5.450453 AGAGAACAGAAGATCGGAAGGATA 58.550 41.667 0.00 0.00 34.82 2.59
390 394 0.173481 CGGCCGATGAAGAGAACAGA 59.827 55.000 24.07 0.00 0.00 3.41
393 397 2.517450 CGCGGCCGATGAAGAGAAC 61.517 63.158 33.48 5.54 36.29 3.01
408 412 2.660552 ACCTGAACGACAACCGCG 60.661 61.111 0.00 0.00 43.32 6.46
434 443 1.355720 AGGTTGTCATGCTAAGGCCTT 59.644 47.619 24.18 24.18 37.74 4.35
453 462 5.989777 CCTTGTTATAGTAAATGGTCGGGAG 59.010 44.000 0.00 0.00 0.00 4.30
497 506 3.893763 CGCCGTCATCGCTCCTCT 61.894 66.667 0.00 0.00 35.54 3.69
525 534 4.202212 TGACTACAAGCACTAGAGCAAACA 60.202 41.667 14.80 2.36 36.85 2.83
527 536 4.600692 TGACTACAAGCACTAGAGCAAA 57.399 40.909 14.80 0.00 36.85 3.68
607 677 6.103997 TCCGACCTATTCATTAACTGTCAAC 58.896 40.000 0.00 0.00 0.00 3.18
699 854 7.011482 GGTTATGTGAGTGCTAAACTAATCCTG 59.989 40.741 0.00 0.00 40.07 3.86
708 863 6.299805 AGATGAGGTTATGTGAGTGCTAAA 57.700 37.500 0.00 0.00 0.00 1.85
709 864 5.939764 AGATGAGGTTATGTGAGTGCTAA 57.060 39.130 0.00 0.00 0.00 3.09
710 865 5.422012 TCAAGATGAGGTTATGTGAGTGCTA 59.578 40.000 0.00 0.00 0.00 3.49
711 866 4.223700 TCAAGATGAGGTTATGTGAGTGCT 59.776 41.667 0.00 0.00 0.00 4.40
712 867 4.507710 TCAAGATGAGGTTATGTGAGTGC 58.492 43.478 0.00 0.00 0.00 4.40
713 868 8.722480 TTAATCAAGATGAGGTTATGTGAGTG 57.278 34.615 0.00 0.00 0.00 3.51
714 869 9.911788 ATTTAATCAAGATGAGGTTATGTGAGT 57.088 29.630 0.00 0.00 0.00 3.41
722 877 9.247861 AGTGCTAAATTTAATCAAGATGAGGTT 57.752 29.630 0.00 0.00 0.00 3.50
723 878 8.814038 AGTGCTAAATTTAATCAAGATGAGGT 57.186 30.769 0.00 0.00 0.00 3.85
724 879 8.896744 TGAGTGCTAAATTTAATCAAGATGAGG 58.103 33.333 0.00 0.00 0.00 3.86
725 880 9.713740 GTGAGTGCTAAATTTAATCAAGATGAG 57.286 33.333 0.00 0.00 0.00 2.90
726 881 9.230122 TGTGAGTGCTAAATTTAATCAAGATGA 57.770 29.630 0.00 0.00 0.00 2.92
732 887 9.461312 AGGTTATGTGAGTGCTAAATTTAATCA 57.539 29.630 0.00 0.00 0.00 2.57
733 888 9.937175 GAGGTTATGTGAGTGCTAAATTTAATC 57.063 33.333 0.00 0.00 0.00 1.75
734 889 9.461312 TGAGGTTATGTGAGTGCTAAATTTAAT 57.539 29.630 0.00 0.00 0.00 1.40
735 890 8.856153 TGAGGTTATGTGAGTGCTAAATTTAA 57.144 30.769 0.00 0.00 0.00 1.52
736 891 9.109393 GATGAGGTTATGTGAGTGCTAAATTTA 57.891 33.333 0.00 0.00 0.00 1.40
737 892 7.831193 AGATGAGGTTATGTGAGTGCTAAATTT 59.169 33.333 0.00 0.00 0.00 1.82
738 893 7.341805 AGATGAGGTTATGTGAGTGCTAAATT 58.658 34.615 0.00 0.00 0.00 1.82
739 894 6.893583 AGATGAGGTTATGTGAGTGCTAAAT 58.106 36.000 0.00 0.00 0.00 1.40
761 916 5.539955 ACGGTAACTCCAGGTTTAGTTAAGA 59.460 40.000 1.61 0.00 39.28 2.10
765 920 3.642848 TGACGGTAACTCCAGGTTTAGTT 59.357 43.478 0.00 0.00 39.17 2.24
767 922 3.947910 TGACGGTAACTCCAGGTTTAG 57.052 47.619 0.00 0.00 39.17 1.85
822 979 4.458642 GGTTTATGTTACGGTGGCCTTTTA 59.541 41.667 3.32 0.00 0.00 1.52
907 1071 5.049198 TCAAGCCGTACGTGAAGGTATATAG 60.049 44.000 15.21 0.00 33.56 1.31
1126 1307 2.933287 ATCGTGGGCCCAACCAGA 60.933 61.111 30.64 23.28 42.20 3.86
1138 1319 1.884464 CCGCCAGGTCATGATCGTG 60.884 63.158 8.74 8.74 0.00 4.35
1446 1802 0.468214 TCGCTCATCCCCTGACTAGG 60.468 60.000 0.00 0.00 44.18 3.02
1478 1834 1.668919 GCGACACGTTCATCTCCTGAA 60.669 52.381 0.00 0.00 41.61 3.02
1479 1835 0.109272 GCGACACGTTCATCTCCTGA 60.109 55.000 0.00 0.00 0.00 3.86
1513 1871 8.697067 CATTTCTCTTTGCACTGTAAATTTGAG 58.303 33.333 0.00 0.00 0.00 3.02
1515 1873 8.578308 TCATTTCTCTTTGCACTGTAAATTTG 57.422 30.769 0.00 0.00 0.00 2.32
1526 1884 1.428912 ACCCCCTCATTTCTCTTTGCA 59.571 47.619 0.00 0.00 0.00 4.08
1543 1907 2.293399 CTCTTTGTTTGTAGCCACACCC 59.707 50.000 0.00 0.00 33.30 4.61
1601 1965 5.883115 TCAACAAGGTCATACACTCAAAACA 59.117 36.000 0.00 0.00 0.00 2.83
1671 2036 3.049708 CTGCAAGTGATCACCTTCTCA 57.950 47.619 22.21 11.86 0.00 3.27
1716 2081 5.584649 TCGGAAACAATATCGATTTTGAGCT 59.415 36.000 28.12 15.09 0.00 4.09
1725 2091 6.103330 TCTTGTCAATCGGAAACAATATCGA 58.897 36.000 0.00 0.00 32.85 3.59
1726 2092 6.344572 TCTTGTCAATCGGAAACAATATCG 57.655 37.500 4.97 0.00 32.85 2.92
1763 2132 1.546323 CCTGGCCTCGGCAATGAATAT 60.546 52.381 10.51 0.00 44.11 1.28
1764 2133 0.179020 CCTGGCCTCGGCAATGAATA 60.179 55.000 10.51 0.00 44.11 1.75
1765 2134 1.454479 CCTGGCCTCGGCAATGAAT 60.454 57.895 10.51 0.00 44.11 2.57
1766 2135 2.045045 CCTGGCCTCGGCAATGAA 60.045 61.111 10.51 0.00 44.11 2.57
1767 2136 4.802051 GCCTGGCCTCGGCAATGA 62.802 66.667 25.69 0.00 46.77 2.57
1773 2142 3.160047 AGATGAGCCTGGCCTCGG 61.160 66.667 16.57 5.70 34.56 4.63
1774 2143 2.108566 CAGATGAGCCTGGCCTCG 59.891 66.667 16.57 3.50 34.56 4.63
1775 2144 2.203181 GCAGATGAGCCTGGCCTC 60.203 66.667 16.57 12.66 34.82 4.70
1776 2145 3.013327 TGCAGATGAGCCTGGCCT 61.013 61.111 16.57 1.63 34.82 5.19
1777 2146 2.827642 GTGCAGATGAGCCTGGCC 60.828 66.667 16.57 7.66 34.82 5.36
1778 2147 1.378250 AAGTGCAGATGAGCCTGGC 60.378 57.895 11.65 11.65 34.82 4.85
1779 2148 1.030488 CCAAGTGCAGATGAGCCTGG 61.030 60.000 0.00 0.00 34.82 4.45
1780 2149 0.322277 ACCAAGTGCAGATGAGCCTG 60.322 55.000 0.00 0.00 37.23 4.85
1781 2150 0.403271 AACCAAGTGCAGATGAGCCT 59.597 50.000 0.00 0.00 0.00 4.58
1782 2151 0.524862 CAACCAAGTGCAGATGAGCC 59.475 55.000 0.00 0.00 0.00 4.70
1783 2152 1.467734 CTCAACCAAGTGCAGATGAGC 59.532 52.381 0.00 0.00 0.00 4.26
1784 2153 3.049708 TCTCAACCAAGTGCAGATGAG 57.950 47.619 5.02 5.02 36.50 2.90
1785 2154 3.490439 TTCTCAACCAAGTGCAGATGA 57.510 42.857 0.00 0.00 0.00 2.92
1786 2155 4.572985 TTTTCTCAACCAAGTGCAGATG 57.427 40.909 0.00 0.00 0.00 2.90
1835 2204 7.554211 ACCATGCAAAAACAAATTGGATTTTT 58.446 26.923 4.27 5.49 36.81 1.94
1836 2205 7.110043 ACCATGCAAAAACAAATTGGATTTT 57.890 28.000 4.27 2.24 36.81 1.82
1837 2206 6.712179 ACCATGCAAAAACAAATTGGATTT 57.288 29.167 4.27 0.00 36.81 2.17
1838 2207 6.769822 TGTACCATGCAAAAACAAATTGGATT 59.230 30.769 4.27 0.00 36.81 3.01
1839 2208 6.294473 TGTACCATGCAAAAACAAATTGGAT 58.706 32.000 4.27 0.00 39.08 3.41
1840 2209 5.674525 TGTACCATGCAAAAACAAATTGGA 58.325 33.333 4.27 0.00 32.55 3.53
1841 2210 5.998454 TGTACCATGCAAAAACAAATTGG 57.002 34.783 0.00 0.00 0.00 3.16
1842 2211 8.772705 AGTTATGTACCATGCAAAAACAAATTG 58.227 29.630 0.00 0.00 0.00 2.32
1843 2212 8.900983 AGTTATGTACCATGCAAAAACAAATT 57.099 26.923 0.00 0.00 0.00 1.82
1844 2213 8.772705 CAAGTTATGTACCATGCAAAAACAAAT 58.227 29.630 0.00 0.00 0.00 2.32
1845 2214 7.225538 CCAAGTTATGTACCATGCAAAAACAAA 59.774 33.333 0.00 0.00 0.00 2.83
1846 2215 6.703607 CCAAGTTATGTACCATGCAAAAACAA 59.296 34.615 0.00 0.00 0.00 2.83
1847 2216 6.183360 ACCAAGTTATGTACCATGCAAAAACA 60.183 34.615 0.00 0.00 0.00 2.83
1848 2217 6.145371 CACCAAGTTATGTACCATGCAAAAAC 59.855 38.462 0.00 0.00 0.00 2.43
1849 2218 6.219473 CACCAAGTTATGTACCATGCAAAAA 58.781 36.000 0.00 0.00 0.00 1.94
1850 2219 5.777802 CACCAAGTTATGTACCATGCAAAA 58.222 37.500 0.00 0.00 0.00 2.44
1851 2220 4.321601 GCACCAAGTTATGTACCATGCAAA 60.322 41.667 0.00 0.00 0.00 3.68
1852 2221 3.192422 GCACCAAGTTATGTACCATGCAA 59.808 43.478 0.00 0.00 0.00 4.08
1853 2222 2.752354 GCACCAAGTTATGTACCATGCA 59.248 45.455 0.00 0.00 0.00 3.96
1854 2223 2.223249 CGCACCAAGTTATGTACCATGC 60.223 50.000 0.00 0.00 0.00 4.06
1855 2224 2.223249 GCGCACCAAGTTATGTACCATG 60.223 50.000 0.30 0.00 0.00 3.66
1856 2225 2.014128 GCGCACCAAGTTATGTACCAT 58.986 47.619 0.30 0.00 0.00 3.55
1857 2226 1.270893 TGCGCACCAAGTTATGTACCA 60.271 47.619 5.66 0.00 0.00 3.25
1858 2227 1.444836 TGCGCACCAAGTTATGTACC 58.555 50.000 5.66 0.00 0.00 3.34
1859 2228 3.117434 CTTGCGCACCAAGTTATGTAC 57.883 47.619 11.12 0.00 44.74 2.90
1868 2237 3.898509 GCACACCTTGCGCACCAA 61.899 61.111 11.12 0.00 42.79 3.67
1876 2245 3.318839 TCTGAAATTTGGAGCACACCTTG 59.681 43.478 0.00 0.00 0.00 3.61
1877 2246 3.565307 TCTGAAATTTGGAGCACACCTT 58.435 40.909 0.00 0.00 0.00 3.50
1878 2247 3.228188 TCTGAAATTTGGAGCACACCT 57.772 42.857 0.00 0.00 0.00 4.00
1879 2248 3.507233 TGATCTGAAATTTGGAGCACACC 59.493 43.478 0.00 0.00 0.00 4.16
1880 2249 4.771590 TGATCTGAAATTTGGAGCACAC 57.228 40.909 0.00 0.00 0.00 3.82
1881 2250 5.336929 CCAATGATCTGAAATTTGGAGCACA 60.337 40.000 9.78 4.17 39.33 4.57
1882 2251 5.107133 CCAATGATCTGAAATTTGGAGCAC 58.893 41.667 9.78 0.00 39.33 4.40
1883 2252 4.160814 CCCAATGATCTGAAATTTGGAGCA 59.839 41.667 14.02 9.94 39.33 4.26
1884 2253 4.403432 TCCCAATGATCTGAAATTTGGAGC 59.597 41.667 14.02 0.00 39.33 4.70
1885 2254 5.419788 TGTCCCAATGATCTGAAATTTGGAG 59.580 40.000 14.02 0.00 39.33 3.86
1886 2255 5.331906 TGTCCCAATGATCTGAAATTTGGA 58.668 37.500 14.02 9.84 39.33 3.53
1887 2256 5.664294 TGTCCCAATGATCTGAAATTTGG 57.336 39.130 0.00 8.20 37.23 3.28
1888 2257 8.004087 AGTATGTCCCAATGATCTGAAATTTG 57.996 34.615 0.00 0.00 0.00 2.32
1889 2258 7.286316 GGAGTATGTCCCAATGATCTGAAATTT 59.714 37.037 0.00 0.00 39.88 1.82
1890 2259 6.774656 GGAGTATGTCCCAATGATCTGAAATT 59.225 38.462 0.00 0.00 39.88 1.82
1891 2260 6.302269 GGAGTATGTCCCAATGATCTGAAAT 58.698 40.000 0.00 0.00 39.88 2.17
1892 2261 5.684704 GGAGTATGTCCCAATGATCTGAAA 58.315 41.667 0.00 0.00 39.88 2.69
1893 2262 5.296151 GGAGTATGTCCCAATGATCTGAA 57.704 43.478 0.00 0.00 39.88 3.02
1894 2263 4.963318 GGAGTATGTCCCAATGATCTGA 57.037 45.455 0.00 0.00 39.88 3.27
1905 2274 0.751452 GGAACGGAGGGAGTATGTCC 59.249 60.000 0.00 0.00 46.10 4.02
1906 2275 1.409427 CTGGAACGGAGGGAGTATGTC 59.591 57.143 0.00 0.00 36.31 3.06
1907 2276 1.006758 TCTGGAACGGAGGGAGTATGT 59.993 52.381 0.00 0.00 39.80 2.29
1908 2277 1.776662 TCTGGAACGGAGGGAGTATG 58.223 55.000 0.00 0.00 39.80 2.39
1917 2286 6.989155 ATACACCTTATATTCTGGAACGGA 57.011 37.500 0.00 0.00 45.11 4.69
1918 2287 8.118976 TCTATACACCTTATATTCTGGAACGG 57.881 38.462 0.00 0.00 0.00 4.44
1931 2300 9.793252 GACTTACACGAAAATCTATACACCTTA 57.207 33.333 0.00 0.00 0.00 2.69
1932 2301 8.308931 TGACTTACACGAAAATCTATACACCTT 58.691 33.333 0.00 0.00 0.00 3.50
1933 2302 7.833786 TGACTTACACGAAAATCTATACACCT 58.166 34.615 0.00 0.00 0.00 4.00
1934 2303 8.378421 GTTGACTTACACGAAAATCTATACACC 58.622 37.037 0.00 0.00 0.00 4.16
1935 2304 8.918658 TGTTGACTTACACGAAAATCTATACAC 58.081 33.333 0.00 0.00 0.00 2.90
1936 2305 9.478768 TTGTTGACTTACACGAAAATCTATACA 57.521 29.630 0.00 0.00 0.00 2.29
1945 2314 9.790389 ACATTTAAATTGTTGACTTACACGAAA 57.210 25.926 0.00 0.00 0.00 3.46
1946 2315 9.790389 AACATTTAAATTGTTGACTTACACGAA 57.210 25.926 12.33 0.00 0.00 3.85
1947 2316 9.790389 AAACATTTAAATTGTTGACTTACACGA 57.210 25.926 13.28 0.00 0.00 4.35
1948 2317 9.828220 CAAACATTTAAATTGTTGACTTACACG 57.172 29.630 12.38 0.00 0.00 4.49
1953 2322 9.442047 TTGGTCAAACATTTAAATTGTTGACTT 57.558 25.926 30.29 12.45 31.22 3.01
1954 2323 9.097257 CTTGGTCAAACATTTAAATTGTTGACT 57.903 29.630 30.29 12.68 31.22 3.41
1955 2324 9.092876 TCTTGGTCAAACATTTAAATTGTTGAC 57.907 29.630 27.34 27.34 0.00 3.18
1956 2325 9.829507 ATCTTGGTCAAACATTTAAATTGTTGA 57.170 25.926 14.92 14.92 0.00 3.18
1991 2360 9.243105 ACTAGGTATTGCAGATGTTGTTATTTT 57.757 29.630 0.00 0.00 0.00 1.82
1992 2361 8.807948 ACTAGGTATTGCAGATGTTGTTATTT 57.192 30.769 0.00 0.00 0.00 1.40
1993 2362 9.547753 CTACTAGGTATTGCAGATGTTGTTATT 57.452 33.333 0.00 0.00 0.00 1.40
1994 2363 8.924303 TCTACTAGGTATTGCAGATGTTGTTAT 58.076 33.333 0.00 0.00 0.00 1.89
1995 2364 8.301252 TCTACTAGGTATTGCAGATGTTGTTA 57.699 34.615 0.00 0.00 0.00 2.41
1996 2365 7.182817 TCTACTAGGTATTGCAGATGTTGTT 57.817 36.000 0.00 0.00 0.00 2.83
1997 2366 6.791867 TCTACTAGGTATTGCAGATGTTGT 57.208 37.500 0.00 0.00 0.00 3.32
1998 2367 9.764363 TTTATCTACTAGGTATTGCAGATGTTG 57.236 33.333 0.00 0.00 0.00 3.33
2030 2399 9.865321 CATTTGATCCATCATGAAAAGTAGTTT 57.135 29.630 0.00 0.00 36.56 2.66
2031 2400 9.246670 TCATTTGATCCATCATGAAAAGTAGTT 57.753 29.630 0.00 0.00 36.56 2.24
2032 2401 8.812513 TCATTTGATCCATCATGAAAAGTAGT 57.187 30.769 0.00 0.00 36.56 2.73
2088 2457 8.803799 GCAAGTTTGATCGAGTTTTTAGAAAAA 58.196 29.630 0.00 0.00 35.67 1.94
2089 2458 7.971168 TGCAAGTTTGATCGAGTTTTTAGAAAA 59.029 29.630 0.00 0.00 0.00 2.29
2090 2459 7.476667 TGCAAGTTTGATCGAGTTTTTAGAAA 58.523 30.769 0.00 0.00 0.00 2.52
2091 2460 7.022055 TGCAAGTTTGATCGAGTTTTTAGAA 57.978 32.000 0.00 0.00 0.00 2.10
2092 2461 6.612247 TGCAAGTTTGATCGAGTTTTTAGA 57.388 33.333 0.00 0.00 0.00 2.10
2093 2462 7.201182 CGAATGCAAGTTTGATCGAGTTTTTAG 60.201 37.037 0.00 0.00 34.48 1.85
2094 2463 6.577055 CGAATGCAAGTTTGATCGAGTTTTTA 59.423 34.615 0.00 0.00 34.48 1.52
2095 2464 5.399301 CGAATGCAAGTTTGATCGAGTTTTT 59.601 36.000 0.00 0.00 34.48 1.94
2096 2465 4.911610 CGAATGCAAGTTTGATCGAGTTTT 59.088 37.500 0.00 0.00 34.48 2.43
2097 2466 4.024048 ACGAATGCAAGTTTGATCGAGTTT 60.024 37.500 16.42 0.00 35.63 2.66
2098 2467 3.498397 ACGAATGCAAGTTTGATCGAGTT 59.502 39.130 16.42 0.00 35.63 3.01
2099 2468 3.067106 ACGAATGCAAGTTTGATCGAGT 58.933 40.909 16.42 1.51 35.63 4.18
2100 2469 3.729526 ACGAATGCAAGTTTGATCGAG 57.270 42.857 16.42 1.03 35.63 4.04
2101 2470 4.481930 AAACGAATGCAAGTTTGATCGA 57.518 36.364 14.66 0.00 38.90 3.59
2107 2476 5.163663 TGAGAAGTCAAACGAATGCAAGTTT 60.164 36.000 11.05 11.05 40.74 2.66
2108 2477 4.335315 TGAGAAGTCAAACGAATGCAAGTT 59.665 37.500 0.00 0.00 0.00 2.66
2109 2478 3.876914 TGAGAAGTCAAACGAATGCAAGT 59.123 39.130 0.00 0.00 0.00 3.16
2110 2479 4.472691 TGAGAAGTCAAACGAATGCAAG 57.527 40.909 0.00 0.00 0.00 4.01
2111 2480 4.891627 TTGAGAAGTCAAACGAATGCAA 57.108 36.364 0.00 0.00 39.85 4.08
2112 2481 4.891627 TTTGAGAAGTCAAACGAATGCA 57.108 36.364 0.00 0.00 45.82 3.96
2139 2508 9.082313 CCTCCATTCTTTTATATAAGGTGCATT 57.918 33.333 0.00 0.00 0.00 3.56
2140 2509 7.671398 CCCTCCATTCTTTTATATAAGGTGCAT 59.329 37.037 0.00 0.00 0.00 3.96
2141 2510 7.004086 CCCTCCATTCTTTTATATAAGGTGCA 58.996 38.462 3.49 0.00 0.00 4.57
2142 2511 7.231467 TCCCTCCATTCTTTTATATAAGGTGC 58.769 38.462 3.49 0.00 0.00 5.01
2143 2512 8.440771 ACTCCCTCCATTCTTTTATATAAGGTG 58.559 37.037 3.49 3.68 0.00 4.00
2144 2513 8.582891 ACTCCCTCCATTCTTTTATATAAGGT 57.417 34.615 3.49 0.00 0.00 3.50
2149 2518 9.398921 ACTCATACTCCCTCCATTCTTTTATAT 57.601 33.333 0.00 0.00 0.00 0.86
2150 2519 8.798975 ACTCATACTCCCTCCATTCTTTTATA 57.201 34.615 0.00 0.00 0.00 0.98
2151 2520 7.698163 ACTCATACTCCCTCCATTCTTTTAT 57.302 36.000 0.00 0.00 0.00 1.40
2152 2521 7.202011 GCTACTCATACTCCCTCCATTCTTTTA 60.202 40.741 0.00 0.00 0.00 1.52
2153 2522 6.408662 GCTACTCATACTCCCTCCATTCTTTT 60.409 42.308 0.00 0.00 0.00 2.27
2154 2523 5.071115 GCTACTCATACTCCCTCCATTCTTT 59.929 44.000 0.00 0.00 0.00 2.52
2155 2524 4.591072 GCTACTCATACTCCCTCCATTCTT 59.409 45.833 0.00 0.00 0.00 2.52
2156 2525 4.140805 AGCTACTCATACTCCCTCCATTCT 60.141 45.833 0.00 0.00 0.00 2.40
2157 2526 4.156477 AGCTACTCATACTCCCTCCATTC 58.844 47.826 0.00 0.00 0.00 2.67
2158 2527 4.206244 AGCTACTCATACTCCCTCCATT 57.794 45.455 0.00 0.00 0.00 3.16
2159 2528 3.913370 AGCTACTCATACTCCCTCCAT 57.087 47.619 0.00 0.00 0.00 3.41
2160 2529 4.354087 TGATAGCTACTCATACTCCCTCCA 59.646 45.833 0.00 0.00 0.00 3.86
2161 2530 4.924625 TGATAGCTACTCATACTCCCTCC 58.075 47.826 0.00 0.00 0.00 4.30
2162 2531 4.398044 GCTGATAGCTACTCATACTCCCTC 59.602 50.000 0.00 0.00 38.45 4.30
2163 2532 4.202620 TGCTGATAGCTACTCATACTCCCT 60.203 45.833 0.00 0.00 42.97 4.20
2164 2533 4.082845 TGCTGATAGCTACTCATACTCCC 58.917 47.826 0.00 0.00 42.97 4.30
2165 2534 5.713792 TTGCTGATAGCTACTCATACTCC 57.286 43.478 0.00 0.00 42.97 3.85
2187 2556 6.836242 TGTTCTTGGCCCAATTTATCTTTTT 58.164 32.000 0.00 0.00 0.00 1.94
2188 2557 6.432403 TGTTCTTGGCCCAATTTATCTTTT 57.568 33.333 0.00 0.00 0.00 2.27
2189 2558 6.432403 TTGTTCTTGGCCCAATTTATCTTT 57.568 33.333 0.00 0.00 0.00 2.52
2190 2559 6.625532 ATTGTTCTTGGCCCAATTTATCTT 57.374 33.333 0.00 0.00 0.00 2.40
2191 2560 6.667414 TGTATTGTTCTTGGCCCAATTTATCT 59.333 34.615 9.12 0.00 31.63 1.98
2192 2561 6.872920 TGTATTGTTCTTGGCCCAATTTATC 58.127 36.000 9.12 1.28 31.63 1.75
2193 2562 6.865834 TGTATTGTTCTTGGCCCAATTTAT 57.134 33.333 9.12 0.00 31.63 1.40
2194 2563 6.865834 ATGTATTGTTCTTGGCCCAATTTA 57.134 33.333 9.12 1.21 31.63 1.40
2195 2564 5.760484 ATGTATTGTTCTTGGCCCAATTT 57.240 34.783 9.12 0.00 31.63 1.82
2196 2565 6.865834 TTATGTATTGTTCTTGGCCCAATT 57.134 33.333 9.12 0.00 31.63 2.32
2197 2566 6.212388 TGTTTATGTATTGTTCTTGGCCCAAT 59.788 34.615 0.00 4.73 33.62 3.16
2198 2567 5.540337 TGTTTATGTATTGTTCTTGGCCCAA 59.460 36.000 0.00 0.00 0.00 4.12
2199 2568 5.080337 TGTTTATGTATTGTTCTTGGCCCA 58.920 37.500 0.00 0.00 0.00 5.36
2200 2569 5.185056 ACTGTTTATGTATTGTTCTTGGCCC 59.815 40.000 0.00 0.00 0.00 5.80
2201 2570 6.267496 ACTGTTTATGTATTGTTCTTGGCC 57.733 37.500 0.00 0.00 0.00 5.36
2202 2571 9.341899 CTTTACTGTTTATGTATTGTTCTTGGC 57.658 33.333 0.00 0.00 0.00 4.52
2219 2588 9.628500 AGGATCTGTAAAGAAAACTTTACTGTT 57.372 29.630 23.64 19.55 45.18 3.16
2256 2625 3.937814 TCTGATTAGCTCTCGGCAAAAA 58.062 40.909 0.00 0.00 44.79 1.94
2257 2626 3.610040 TCTGATTAGCTCTCGGCAAAA 57.390 42.857 0.00 0.00 44.79 2.44
2258 2627 3.118629 ACATCTGATTAGCTCTCGGCAAA 60.119 43.478 0.00 0.00 44.79 3.68
2259 2628 2.432146 ACATCTGATTAGCTCTCGGCAA 59.568 45.455 0.00 0.00 44.79 4.52
2260 2629 2.034878 ACATCTGATTAGCTCTCGGCA 58.965 47.619 0.00 0.00 44.79 5.69
2261 2630 2.295909 AGACATCTGATTAGCTCTCGGC 59.704 50.000 0.00 0.00 42.19 5.54
2262 2631 5.697473 TTAGACATCTGATTAGCTCTCGG 57.303 43.478 0.00 0.00 0.00 4.63
2263 2632 7.366513 TCATTTAGACATCTGATTAGCTCTCG 58.633 38.462 0.00 0.00 0.00 4.04
2264 2633 9.357652 GATCATTTAGACATCTGATTAGCTCTC 57.642 37.037 0.00 0.00 0.00 3.20
2265 2634 9.092338 AGATCATTTAGACATCTGATTAGCTCT 57.908 33.333 0.00 0.00 0.00 4.09
2266 2635 9.142515 CAGATCATTTAGACATCTGATTAGCTC 57.857 37.037 0.00 0.00 44.35 4.09
2267 2636 8.868103 TCAGATCATTTAGACATCTGATTAGCT 58.132 33.333 6.73 0.00 44.92 3.32
2274 2643 9.731819 CCAAATTTCAGATCATTTAGACATCTG 57.268 33.333 0.00 2.32 43.38 2.90
2275 2644 9.690913 TCCAAATTTCAGATCATTTAGACATCT 57.309 29.630 0.00 0.00 0.00 2.90
2276 2645 9.947669 CTCCAAATTTCAGATCATTTAGACATC 57.052 33.333 0.00 0.00 0.00 3.06
2277 2646 8.411683 GCTCCAAATTTCAGATCATTTAGACAT 58.588 33.333 0.00 0.00 0.00 3.06
2278 2647 7.414429 CGCTCCAAATTTCAGATCATTTAGACA 60.414 37.037 0.00 0.00 0.00 3.41
2279 2648 6.909357 CGCTCCAAATTTCAGATCATTTAGAC 59.091 38.462 0.00 0.00 0.00 2.59
2280 2649 6.038603 CCGCTCCAAATTTCAGATCATTTAGA 59.961 38.462 0.00 0.00 0.00 2.10
2281 2650 6.038603 TCCGCTCCAAATTTCAGATCATTTAG 59.961 38.462 0.00 0.00 0.00 1.85
2282 2651 5.885352 TCCGCTCCAAATTTCAGATCATTTA 59.115 36.000 0.00 0.00 0.00 1.40
2283 2652 4.706476 TCCGCTCCAAATTTCAGATCATTT 59.294 37.500 0.00 0.00 0.00 2.32
2284 2653 4.096984 GTCCGCTCCAAATTTCAGATCATT 59.903 41.667 0.00 0.00 0.00 2.57
2285 2654 3.629398 GTCCGCTCCAAATTTCAGATCAT 59.371 43.478 0.00 0.00 0.00 2.45
2286 2655 3.009723 GTCCGCTCCAAATTTCAGATCA 58.990 45.455 0.00 0.00 0.00 2.92
2287 2656 2.356069 GGTCCGCTCCAAATTTCAGATC 59.644 50.000 0.00 0.00 0.00 2.75
2288 2657 2.025887 AGGTCCGCTCCAAATTTCAGAT 60.026 45.455 0.00 0.00 0.00 2.90
2289 2658 1.351017 AGGTCCGCTCCAAATTTCAGA 59.649 47.619 0.00 0.00 0.00 3.27
2290 2659 1.740025 GAGGTCCGCTCCAAATTTCAG 59.260 52.381 0.00 0.00 0.00 3.02
2291 2660 1.073125 TGAGGTCCGCTCCAAATTTCA 59.927 47.619 0.00 0.00 0.00 2.69
2292 2661 1.821216 TGAGGTCCGCTCCAAATTTC 58.179 50.000 0.00 0.00 0.00 2.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.