Multiple sequence alignment - TraesCS7A01G502700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G502700 chr7A 100.000 5317 0 0 1 5317 691600001 691605317 0.000000e+00 9819.0
1 TraesCS7A01G502700 chr7D 90.921 2996 173 39 248 3204 599485199 599482264 0.000000e+00 3934.0
2 TraesCS7A01G502700 chr7D 89.684 1454 87 27 3216 4626 599482282 599480849 0.000000e+00 1796.0
3 TraesCS7A01G502700 chr7D 92.432 185 10 4 4769 4952 599480745 599480564 1.470000e-65 261.0
4 TraesCS7A01G502700 chr7D 86.818 220 26 3 4970 5188 599480571 599480354 5.320000e-60 243.0
5 TraesCS7A01G502700 chr7B 89.424 1579 97 26 459 2013 678774399 678772867 0.000000e+00 1927.0
6 TraesCS7A01G502700 chr7B 91.094 1426 99 15 3216 4624 678771756 678770342 0.000000e+00 1905.0
7 TraesCS7A01G502700 chr7B 92.803 1181 72 6 2025 3204 678772906 678771738 0.000000e+00 1698.0
8 TraesCS7A01G502700 chr7B 91.909 482 33 5 4769 5248 678770192 678769715 0.000000e+00 669.0
9 TraesCS7A01G502700 chr7B 83.732 418 52 15 4772 5180 683520148 683520558 1.080000e-101 381.0
10 TraesCS7A01G502700 chr7B 87.215 219 21 7 4772 4988 683519524 683519737 5.320000e-60 243.0
11 TraesCS7A01G502700 chr7B 83.478 115 16 2 2853 2966 679587342 679587454 2.620000e-18 104.0
12 TraesCS7A01G502700 chr3B 89.080 174 18 1 1809 1982 737333684 737333512 1.160000e-51 215.0
13 TraesCS7A01G502700 chr3B 88.757 169 18 1 1830 1998 737379334 737379167 6.980000e-49 206.0
14 TraesCS7A01G502700 chr3B 88.742 151 16 1 2151 2300 737333353 737333203 3.270000e-42 183.0
15 TraesCS7A01G502700 chr3B 87.097 62 6 2 2151 2211 737379023 737378963 9.560000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G502700 chr7A 691600001 691605317 5316 False 9819.00 9819 100.00000 1 5317 1 chr7A.!!$F1 5316
1 TraesCS7A01G502700 chr7D 599480354 599485199 4845 True 1558.50 3934 89.96375 248 5188 4 chr7D.!!$R1 4940
2 TraesCS7A01G502700 chr7B 678769715 678774399 4684 True 1549.75 1927 91.30750 459 5248 4 chr7B.!!$R1 4789
3 TraesCS7A01G502700 chr7B 683519524 683520558 1034 False 312.00 381 85.47350 4772 5180 2 chr7B.!!$F2 408

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
244 245 0.253327 CCTAGACTTTCCACCCCTGC 59.747 60.0 0.0 0.0 0.0 4.85 F
999 1034 0.044244 TGGGGAGGGGAGGTTTAGAG 59.956 60.0 0.0 0.0 0.0 2.43 F
1288 1332 0.259065 TTGGTGGTGGTTTGTGGCTA 59.741 50.0 0.0 0.0 0.0 3.93 F
2769 2828 0.251653 AGACGACTTCAGCCCAGGTA 60.252 55.0 0.0 0.0 0.0 3.08 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1711 1756 0.037975 CAGTCCCAATTTGGCAGCAC 60.038 55.0 10.10 3.85 35.79 4.40 R
2520 2579 0.111061 TCTTCAGTGGCCTGCACATT 59.889 50.0 3.32 0.00 38.66 2.71 R
3191 3252 0.321564 TTTGCGGGGTGATCACTCTG 60.322 55.0 27.47 27.47 41.13 3.35 R
4454 4548 0.185901 AGCTGGACAACAACCCATGT 59.814 50.0 0.00 0.00 46.82 3.21 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 9.755064 AAATTTATTAACGTTGAGAAGATGTCG 57.245 29.630 11.99 0.00 0.00 4.35
52 53 7.502177 TTATTAACGTTGAGAAGATGTCGAC 57.498 36.000 11.99 9.11 0.00 4.20
53 54 3.644884 AACGTTGAGAAGATGTCGACT 57.355 42.857 17.92 1.84 0.00 4.18
55 56 2.293677 ACGTTGAGAAGATGTCGACTGT 59.706 45.455 17.92 5.36 0.00 3.55
56 57 3.501062 ACGTTGAGAAGATGTCGACTGTA 59.499 43.478 17.92 0.00 0.00 2.74
57 58 4.156190 ACGTTGAGAAGATGTCGACTGTAT 59.844 41.667 17.92 1.25 0.00 2.29
58 59 5.096169 CGTTGAGAAGATGTCGACTGTATT 58.904 41.667 17.92 8.98 0.00 1.89
59 60 5.228220 CGTTGAGAAGATGTCGACTGTATTC 59.772 44.000 17.92 16.77 0.00 1.75
60 61 4.909894 TGAGAAGATGTCGACTGTATTCG 58.090 43.478 17.92 0.00 40.53 3.34
61 62 4.634443 TGAGAAGATGTCGACTGTATTCGA 59.366 41.667 17.92 7.97 45.62 3.71
69 70 3.805207 TCGACTGTATTCGATCTCTCCA 58.195 45.455 0.00 0.00 43.01 3.86
70 71 4.390264 TCGACTGTATTCGATCTCTCCAT 58.610 43.478 0.00 0.00 43.01 3.41
72 73 4.214332 CGACTGTATTCGATCTCTCCATCA 59.786 45.833 0.00 0.00 41.78 3.07
73 74 5.278022 CGACTGTATTCGATCTCTCCATCAA 60.278 44.000 0.00 0.00 41.78 2.57
74 75 5.837437 ACTGTATTCGATCTCTCCATCAAC 58.163 41.667 0.00 0.00 0.00 3.18
75 76 5.360999 ACTGTATTCGATCTCTCCATCAACA 59.639 40.000 0.00 0.00 0.00 3.33
76 77 5.592054 TGTATTCGATCTCTCCATCAACAC 58.408 41.667 0.00 0.00 0.00 3.32
79 80 2.952310 TCGATCTCTCCATCAACACGAT 59.048 45.455 0.00 0.00 33.27 3.73
80 81 4.134563 TCGATCTCTCCATCAACACGATA 58.865 43.478 0.00 0.00 31.20 2.92
81 82 4.762251 TCGATCTCTCCATCAACACGATAT 59.238 41.667 0.00 0.00 31.20 1.63
83 84 5.335191 CGATCTCTCCATCAACACGATATGA 60.335 44.000 0.00 0.00 31.20 2.15
84 85 5.852282 TCTCTCCATCAACACGATATGAA 57.148 39.130 0.00 0.00 31.20 2.57
85 86 6.220726 TCTCTCCATCAACACGATATGAAA 57.779 37.500 0.00 0.00 31.20 2.69
87 88 7.102993 TCTCTCCATCAACACGATATGAAAAA 58.897 34.615 0.00 0.00 31.20 1.94
88 89 7.064609 TCTCTCCATCAACACGATATGAAAAAC 59.935 37.037 0.00 0.00 31.20 2.43
90 91 8.038351 TCTCCATCAACACGATATGAAAAACTA 58.962 33.333 0.00 0.00 31.20 2.24
91 92 7.970384 TCCATCAACACGATATGAAAAACTAC 58.030 34.615 0.00 0.00 31.20 2.73
92 93 7.822334 TCCATCAACACGATATGAAAAACTACT 59.178 33.333 0.00 0.00 31.20 2.57
93 94 9.093970 CCATCAACACGATATGAAAAACTACTA 57.906 33.333 0.00 0.00 31.20 1.82
96 97 9.350357 TCAACACGATATGAAAAACTACTACTC 57.650 33.333 0.00 0.00 0.00 2.59
97 98 9.135843 CAACACGATATGAAAAACTACTACTCA 57.864 33.333 0.00 0.00 0.00 3.41
98 99 9.701098 AACACGATATGAAAAACTACTACTCAA 57.299 29.630 0.00 0.00 0.00 3.02
99 100 9.355215 ACACGATATGAAAAACTACTACTCAAG 57.645 33.333 0.00 0.00 0.00 3.02
100 101 9.569167 CACGATATGAAAAACTACTACTCAAGA 57.431 33.333 0.00 0.00 0.00 3.02
107 108 8.242053 TGAAAAACTACTACTCAAGATACCTCG 58.758 37.037 0.00 0.00 0.00 4.63
110 111 5.191426 ACTACTACTCAAGATACCTCGCAA 58.809 41.667 0.00 0.00 0.00 4.85
111 112 5.651139 ACTACTACTCAAGATACCTCGCAAA 59.349 40.000 0.00 0.00 0.00 3.68
112 113 5.401531 ACTACTCAAGATACCTCGCAAAA 57.598 39.130 0.00 0.00 0.00 2.44
113 114 5.790593 ACTACTCAAGATACCTCGCAAAAA 58.209 37.500 0.00 0.00 0.00 1.94
140 141 9.877178 AAAAACTACTCAAGATATCGAGAATGT 57.123 29.630 12.86 6.25 33.33 2.71
168 169 6.529463 AAAAACTTCATGCAAATTCCTTCG 57.471 33.333 0.00 0.00 0.00 3.79
169 170 5.452078 AAACTTCATGCAAATTCCTTCGA 57.548 34.783 0.00 0.00 0.00 3.71
170 171 5.649782 AACTTCATGCAAATTCCTTCGAT 57.350 34.783 0.00 0.00 0.00 3.59
171 172 6.757897 AACTTCATGCAAATTCCTTCGATA 57.242 33.333 0.00 0.00 0.00 2.92
172 173 6.757897 ACTTCATGCAAATTCCTTCGATAA 57.242 33.333 0.00 0.00 0.00 1.75
173 174 7.156876 ACTTCATGCAAATTCCTTCGATAAA 57.843 32.000 0.00 0.00 0.00 1.40
175 176 7.121168 ACTTCATGCAAATTCCTTCGATAAAGA 59.879 33.333 0.00 0.00 37.12 2.52
176 177 7.019774 TCATGCAAATTCCTTCGATAAAGAG 57.980 36.000 0.00 0.00 37.12 2.85
177 178 6.823182 TCATGCAAATTCCTTCGATAAAGAGA 59.177 34.615 0.00 0.00 37.12 3.10
178 179 6.422776 TGCAAATTCCTTCGATAAAGAGAC 57.577 37.500 0.00 0.00 37.12 3.36
179 180 5.063438 TGCAAATTCCTTCGATAAAGAGACG 59.937 40.000 0.00 0.00 37.12 4.18
181 182 6.697152 CAAATTCCTTCGATAAAGAGACGTC 58.303 40.000 7.70 7.70 37.12 4.34
184 185 2.541178 CCTTCGATAAAGAGACGTCCCG 60.541 54.545 13.01 5.08 37.12 5.14
185 186 1.742761 TCGATAAAGAGACGTCCCGT 58.257 50.000 13.01 0.00 45.10 5.28
186 187 1.399440 TCGATAAAGAGACGTCCCGTG 59.601 52.381 13.01 0.00 41.37 4.94
188 189 2.352651 CGATAAAGAGACGTCCCGTGTA 59.647 50.000 13.01 0.00 41.37 2.90
189 190 3.689346 GATAAAGAGACGTCCCGTGTAC 58.311 50.000 13.01 0.00 41.37 2.90
190 191 1.321474 AAAGAGACGTCCCGTGTACA 58.679 50.000 13.01 0.00 41.37 2.90
192 193 0.595095 AGAGACGTCCCGTGTACAAC 59.405 55.000 13.01 0.00 41.37 3.32
210 211 3.810373 CAACGTAATTGTCACCTTCAGC 58.190 45.455 0.00 0.00 33.20 4.26
213 214 2.811431 CGTAATTGTCACCTTCAGCCAA 59.189 45.455 0.00 0.00 0.00 4.52
215 216 3.947910 AATTGTCACCTTCAGCCAATG 57.052 42.857 0.00 0.00 0.00 2.82
216 217 2.655090 TTGTCACCTTCAGCCAATGA 57.345 45.000 0.00 0.00 35.62 2.57
217 218 2.655090 TGTCACCTTCAGCCAATGAA 57.345 45.000 0.00 0.00 45.79 2.57
218 219 2.229792 TGTCACCTTCAGCCAATGAAC 58.770 47.619 0.00 0.00 43.09 3.18
219 220 1.197721 GTCACCTTCAGCCAATGAACG 59.802 52.381 0.00 0.00 43.09 3.95
220 221 1.202758 TCACCTTCAGCCAATGAACGT 60.203 47.619 0.00 0.00 43.09 3.99
221 222 1.197721 CACCTTCAGCCAATGAACGTC 59.802 52.381 0.00 0.00 43.09 4.34
223 224 1.466167 CCTTCAGCCAATGAACGTCAG 59.534 52.381 0.00 0.00 43.09 3.51
224 225 2.416747 CTTCAGCCAATGAACGTCAGA 58.583 47.619 0.00 0.00 43.09 3.27
226 227 0.798776 CAGCCAATGAACGTCAGACC 59.201 55.000 0.00 0.00 0.00 3.85
227 228 0.687354 AGCCAATGAACGTCAGACCT 59.313 50.000 0.00 0.00 0.00 3.85
228 229 1.899814 AGCCAATGAACGTCAGACCTA 59.100 47.619 0.00 0.00 0.00 3.08
229 230 2.093973 AGCCAATGAACGTCAGACCTAG 60.094 50.000 0.00 0.00 0.00 3.02
230 231 2.094182 GCCAATGAACGTCAGACCTAGA 60.094 50.000 0.00 0.00 0.00 2.43
231 232 3.512680 CCAATGAACGTCAGACCTAGAC 58.487 50.000 0.00 0.00 0.00 2.59
232 233 3.193691 CCAATGAACGTCAGACCTAGACT 59.806 47.826 0.00 0.00 33.89 3.24
233 234 4.322049 CCAATGAACGTCAGACCTAGACTT 60.322 45.833 0.00 0.00 33.89 3.01
235 236 4.500603 TGAACGTCAGACCTAGACTTTC 57.499 45.455 0.00 0.00 41.74 2.62
236 237 3.255149 TGAACGTCAGACCTAGACTTTCC 59.745 47.826 9.18 0.00 41.10 3.13
237 238 2.872732 ACGTCAGACCTAGACTTTCCA 58.127 47.619 0.00 0.00 33.89 3.53
238 239 2.557490 ACGTCAGACCTAGACTTTCCAC 59.443 50.000 0.00 0.00 33.89 4.02
239 240 2.094649 CGTCAGACCTAGACTTTCCACC 60.095 54.545 0.00 0.00 33.89 4.61
240 241 2.234168 GTCAGACCTAGACTTTCCACCC 59.766 54.545 0.00 0.00 33.29 4.61
241 242 1.555533 CAGACCTAGACTTTCCACCCC 59.444 57.143 0.00 0.00 0.00 4.95
243 244 1.555533 GACCTAGACTTTCCACCCCTG 59.444 57.143 0.00 0.00 0.00 4.45
244 245 0.253327 CCTAGACTTTCCACCCCTGC 59.747 60.000 0.00 0.00 0.00 4.85
245 246 0.984230 CTAGACTTTCCACCCCTGCA 59.016 55.000 0.00 0.00 0.00 4.41
263 264 3.459145 TGCAACTTAGCACGACAACTTA 58.541 40.909 0.00 0.00 40.11 2.24
265 266 3.363673 GCAACTTAGCACGACAACTTACC 60.364 47.826 0.00 0.00 0.00 2.85
267 268 2.294233 ACTTAGCACGACAACTTACCGA 59.706 45.455 0.00 0.00 0.00 4.69
269 270 0.319297 AGCACGACAACTTACCGACC 60.319 55.000 0.00 0.00 0.00 4.79
270 271 0.598158 GCACGACAACTTACCGACCA 60.598 55.000 0.00 0.00 0.00 4.02
271 272 1.134226 CACGACAACTTACCGACCAC 58.866 55.000 0.00 0.00 0.00 4.16
285 286 0.881118 GACCACACGGATGCAATGTT 59.119 50.000 0.00 0.00 35.59 2.71
290 291 0.381801 CACGGATGCAATGTTAGGCC 59.618 55.000 0.00 0.00 0.00 5.19
296 297 0.392461 TGCAATGTTAGGCCGACTCC 60.392 55.000 12.59 0.00 0.00 3.85
299 300 1.120530 AATGTTAGGCCGACTCCGAT 58.879 50.000 12.59 0.00 38.22 4.18
313 315 1.953138 CCGATGATGGAGCGACAGC 60.953 63.158 0.00 0.00 45.58 4.40
328 330 4.323477 AGCGGCGGTGTTTGGCTA 62.323 61.111 12.25 0.00 31.03 3.93
334 336 2.478894 CGGCGGTGTTTGGCTATATTAG 59.521 50.000 0.00 0.00 0.00 1.73
379 382 4.210331 AGGATGCCTTGTATCATTGGAAC 58.790 43.478 0.00 0.00 0.00 3.62
421 424 9.612066 AAATCTAGAGCCTTATTCAGAAGAAAG 57.388 33.333 0.00 0.00 37.29 2.62
422 425 7.118496 TCTAGAGCCTTATTCAGAAGAAAGG 57.882 40.000 17.50 17.50 37.29 3.11
423 426 6.897966 TCTAGAGCCTTATTCAGAAGAAAGGA 59.102 38.462 22.92 7.98 34.87 3.36
426 429 4.080072 AGCCTTATTCAGAAGAAAGGAGGG 60.080 45.833 22.92 9.03 34.87 4.30
428 431 2.816777 ATTCAGAAGAAAGGAGGGCC 57.183 50.000 0.00 0.00 37.29 5.80
429 432 1.444933 TTCAGAAGAAAGGAGGGCCA 58.555 50.000 6.18 0.00 36.29 5.36
431 434 1.995542 TCAGAAGAAAGGAGGGCCATT 59.004 47.619 6.18 0.00 36.29 3.16
432 435 2.379907 TCAGAAGAAAGGAGGGCCATTT 59.620 45.455 6.18 3.39 36.29 2.32
433 436 2.494870 CAGAAGAAAGGAGGGCCATTTG 59.505 50.000 6.18 0.00 36.29 2.32
435 438 2.702270 AGAAAGGAGGGCCATTTGTT 57.298 45.000 6.18 0.00 36.29 2.83
437 440 4.337264 AGAAAGGAGGGCCATTTGTTAT 57.663 40.909 6.18 0.00 36.29 1.89
438 441 4.026052 AGAAAGGAGGGCCATTTGTTATG 58.974 43.478 6.18 0.00 36.29 1.90
440 443 4.601406 AAGGAGGGCCATTTGTTATGTA 57.399 40.909 6.18 0.00 36.29 2.29
531 538 3.316071 TCGGCACCGATAAAACAGTTA 57.684 42.857 7.89 0.00 44.01 2.24
600 607 1.476471 GCAGGACCCAATCAGATCCAG 60.476 57.143 0.00 0.00 33.33 3.86
746 756 3.793144 GCTGCGAGCTTCCGTTGG 61.793 66.667 0.00 0.00 38.45 3.77
781 792 3.569873 CCACGGGGAATAAAGTGCT 57.430 52.632 0.00 0.00 35.59 4.40
782 793 1.094785 CCACGGGGAATAAAGTGCTG 58.905 55.000 0.00 0.00 35.59 4.41
783 794 1.094785 CACGGGGAATAAAGTGCTGG 58.905 55.000 0.00 0.00 0.00 4.85
784 795 0.696501 ACGGGGAATAAAGTGCTGGT 59.303 50.000 0.00 0.00 0.00 4.00
785 796 1.094785 CGGGGAATAAAGTGCTGGTG 58.905 55.000 0.00 0.00 0.00 4.17
786 797 0.817654 GGGGAATAAAGTGCTGGTGC 59.182 55.000 0.00 0.00 40.20 5.01
787 798 1.616994 GGGGAATAAAGTGCTGGTGCT 60.617 52.381 0.00 0.00 40.48 4.40
788 799 1.474077 GGGAATAAAGTGCTGGTGCTG 59.526 52.381 0.00 0.00 40.48 4.41
789 800 1.135286 GGAATAAAGTGCTGGTGCTGC 60.135 52.381 0.00 0.00 40.48 5.25
790 801 1.815003 GAATAAAGTGCTGGTGCTGCT 59.185 47.619 0.00 0.00 40.48 4.24
810 821 2.545526 CTGCTAAATGGCCATCACTACG 59.454 50.000 21.08 5.91 0.00 3.51
829 840 2.699846 ACGTCCAACTAACTAACCACCA 59.300 45.455 0.00 0.00 0.00 4.17
833 844 3.717913 TCCAACTAACTAACCACCACCTT 59.282 43.478 0.00 0.00 0.00 3.50
834 845 4.166531 TCCAACTAACTAACCACCACCTTT 59.833 41.667 0.00 0.00 0.00 3.11
838 849 4.657039 ACTAACTAACCACCACCTTTCTCA 59.343 41.667 0.00 0.00 0.00 3.27
839 850 4.513406 AACTAACCACCACCTTTCTCAA 57.487 40.909 0.00 0.00 0.00 3.02
840 851 4.724279 ACTAACCACCACCTTTCTCAAT 57.276 40.909 0.00 0.00 0.00 2.57
940 966 2.048784 TCGTCGTCGTCGTCCTCT 60.049 61.111 11.41 0.00 38.33 3.69
999 1034 0.044244 TGGGGAGGGGAGGTTTAGAG 59.956 60.000 0.00 0.00 0.00 2.43
1203 1245 1.378514 CCTTGGTAACCGCCTGCAT 60.379 57.895 0.00 0.00 0.00 3.96
1212 1254 3.297830 AACCGCCTGCATTTTTACTTC 57.702 42.857 0.00 0.00 0.00 3.01
1248 1290 5.468746 GGATACAGTCTTTGTTGTTGTGCTA 59.531 40.000 0.00 0.00 41.29 3.49
1287 1331 1.000993 TTGGTGGTGGTTTGTGGCT 59.999 52.632 0.00 0.00 0.00 4.75
1288 1332 0.259065 TTGGTGGTGGTTTGTGGCTA 59.741 50.000 0.00 0.00 0.00 3.93
1402 1446 2.734492 GCAGGTGCAGATTGATCAAAGC 60.734 50.000 13.09 16.48 41.59 3.51
1420 1464 9.195411 GATCAAAGCACAAGACAATTTCAATTA 57.805 29.630 0.00 0.00 0.00 1.40
1441 1485 8.505625 CAATTATGCAATTTGTTTACCAAGCTT 58.494 29.630 0.00 0.00 31.82 3.74
1485 1529 7.177216 TGAATAATTTCTGAACATGGCTTCTGT 59.823 33.333 0.00 0.00 32.78 3.41
1493 1537 4.456911 TGAACATGGCTTCTGTTGATCTTC 59.543 41.667 0.00 0.00 36.98 2.87
1518 1562 7.170320 TCGGTGTTCAGTTCTTAGTTTACATTC 59.830 37.037 0.00 0.00 0.00 2.67
1570 1614 4.481368 TCTGGTGAAAACAGTGTAGTGT 57.519 40.909 0.00 0.00 37.25 3.55
1589 1633 4.105486 GTGTCAACTTGGAAGCAAAGTTC 58.895 43.478 0.00 0.00 44.11 3.01
1593 1637 2.365582 ACTTGGAAGCAAAGTTCGTGT 58.634 42.857 0.00 0.00 34.16 4.49
1605 1650 4.776795 AAGTTCGTGTTCACTGGTTTTT 57.223 36.364 1.53 0.00 0.00 1.94
1668 1713 2.600470 GGTGGCCTGGGTTTGTCC 60.600 66.667 3.32 0.00 0.00 4.02
1711 1756 8.893219 TCCATGTGCTTATATTCAGTCTTTAG 57.107 34.615 0.00 0.00 0.00 1.85
1734 1779 1.273327 CTGCCAAATTGGGACTGAACC 59.727 52.381 14.59 0.00 38.19 3.62
1757 1810 9.574516 AACCTCCATTTAAGCCTATTATTACTG 57.425 33.333 0.00 0.00 0.00 2.74
1768 1821 5.533482 CCTATTATTACTGCTTCTGCGTCT 58.467 41.667 0.00 0.00 43.34 4.18
1792 1845 4.021981 AGCTGAAACAAAAGGGTTATGAGC 60.022 41.667 0.00 0.00 31.56 4.26
1812 1865 6.402222 TGAGCTTTATCCTCTGTTTTCTCTC 58.598 40.000 0.00 0.00 0.00 3.20
1827 1880 3.864789 TCTCTCCCTTTGCTCTGTTTT 57.135 42.857 0.00 0.00 0.00 2.43
1828 1881 4.170468 TCTCTCCCTTTGCTCTGTTTTT 57.830 40.909 0.00 0.00 0.00 1.94
1924 1977 4.686554 ACTGATGCAAAGTTTCTAGTCGTC 59.313 41.667 0.00 0.00 0.00 4.20
2179 2235 4.590222 AGGAATCACTTTGAGGTTGCAAAT 59.410 37.500 0.00 0.00 37.16 2.32
2242 2298 4.803908 GGAAGGGAAGGCCTGGCG 62.804 72.222 5.69 0.00 0.00 5.69
2278 2334 1.153939 CCGGCTCAAGTCTCAGTCG 60.154 63.158 0.00 0.00 37.49 4.18
2284 2340 2.473235 GCTCAAGTCTCAGTCGTTTGAC 59.527 50.000 0.00 0.00 45.86 3.18
2335 2391 5.620206 TCTTCTTCTGAAAACCAGCATGTA 58.380 37.500 0.00 0.00 42.62 2.29
2336 2392 5.702670 TCTTCTTCTGAAAACCAGCATGTAG 59.297 40.000 0.00 0.00 42.62 2.74
2338 2394 2.436417 TCTGAAAACCAGCATGTAGGC 58.564 47.619 5.60 0.00 42.62 3.93
2341 2397 1.398390 GAAAACCAGCATGTAGGCTCG 59.602 52.381 0.00 0.00 43.68 5.03
2346 2405 1.002366 CAGCATGTAGGCTCGTTCAC 58.998 55.000 0.00 0.00 43.68 3.18
2426 2485 5.830912 TGGAGCAGAACATTAACAAAACTG 58.169 37.500 0.00 0.00 0.00 3.16
2520 2579 1.229853 GGACCAGAGGGAGGGGAAA 60.230 63.158 0.00 0.00 38.05 3.13
2521 2580 0.845102 GGACCAGAGGGAGGGGAAAA 60.845 60.000 0.00 0.00 38.05 2.29
2522 2581 1.299939 GACCAGAGGGAGGGGAAAAT 58.700 55.000 0.00 0.00 38.05 1.82
2523 2582 1.002857 ACCAGAGGGAGGGGAAAATG 58.997 55.000 0.00 0.00 38.05 2.32
2530 2589 1.607801 GGAGGGGAAAATGTGCAGGC 61.608 60.000 0.00 0.00 0.00 4.85
2668 2727 3.838795 CGACGAAGGCGCGAAAGG 61.839 66.667 12.10 0.00 42.48 3.11
2762 2821 1.721926 GTTGCTACAGACGACTTCAGC 59.278 52.381 9.57 9.57 33.51 4.26
2767 2826 1.079543 CAGACGACTTCAGCCCAGG 60.080 63.158 0.00 0.00 0.00 4.45
2768 2827 1.534235 AGACGACTTCAGCCCAGGT 60.534 57.895 0.00 0.00 0.00 4.00
2769 2828 0.251653 AGACGACTTCAGCCCAGGTA 60.252 55.000 0.00 0.00 0.00 3.08
2770 2829 0.824759 GACGACTTCAGCCCAGGTAT 59.175 55.000 0.00 0.00 0.00 2.73
2810 2870 2.901839 AGGCCTTCTGTTCATGCATTTT 59.098 40.909 0.00 0.00 0.00 1.82
2811 2871 3.325716 AGGCCTTCTGTTCATGCATTTTT 59.674 39.130 0.00 0.00 0.00 1.94
2856 2916 9.289303 AGAATTTTGTACGTATCATGCAAAATC 57.711 29.630 23.16 18.33 45.62 2.17
2900 2961 5.106442 TGATTGATGCTTTCATGTTCATGC 58.894 37.500 7.80 0.00 33.34 4.06
2904 2965 3.564235 TGCTTTCATGTTCATGCAGAC 57.436 42.857 7.80 0.00 0.00 3.51
2973 3034 1.789078 CTGACGGCCAATGCATAGCC 61.789 60.000 24.34 24.34 43.53 3.93
3057 3118 0.254178 GGATCCAGGTGCATGTCTGT 59.746 55.000 6.95 0.00 0.00 3.41
3072 3133 4.953868 TGTCACCCGAACACGGCG 62.954 66.667 4.80 4.80 44.70 6.46
3117 3178 1.677552 CGGGCTCTACCTGGTGTTT 59.322 57.895 10.23 0.00 41.71 2.83
3163 3224 3.900892 CGGCGCTCCACGGTATCT 61.901 66.667 7.64 0.00 43.93 1.98
3186 3247 1.592064 TGAATTTCAGTCAGCGTGCA 58.408 45.000 0.00 0.00 0.00 4.57
3187 3248 1.946081 TGAATTTCAGTCAGCGTGCAA 59.054 42.857 0.00 0.00 0.00 4.08
3188 3249 2.031769 TGAATTTCAGTCAGCGTGCAAG 60.032 45.455 0.00 0.00 0.00 4.01
3189 3250 1.597742 ATTTCAGTCAGCGTGCAAGT 58.402 45.000 0.59 0.00 0.00 3.16
3190 3251 1.378531 TTTCAGTCAGCGTGCAAGTT 58.621 45.000 0.59 0.00 0.00 2.66
3191 3252 0.937304 TTCAGTCAGCGTGCAAGTTC 59.063 50.000 0.59 0.00 0.00 3.01
3192 3253 0.179086 TCAGTCAGCGTGCAAGTTCA 60.179 50.000 0.59 0.00 0.00 3.18
3193 3254 0.234106 CAGTCAGCGTGCAAGTTCAG 59.766 55.000 0.59 0.00 0.00 3.02
3194 3255 0.104855 AGTCAGCGTGCAAGTTCAGA 59.895 50.000 0.59 0.00 0.00 3.27
3195 3256 0.510359 GTCAGCGTGCAAGTTCAGAG 59.490 55.000 0.59 0.00 0.00 3.35
3196 3257 0.104855 TCAGCGTGCAAGTTCAGAGT 59.895 50.000 0.59 0.00 0.00 3.24
3197 3258 0.234106 CAGCGTGCAAGTTCAGAGTG 59.766 55.000 0.59 0.00 0.00 3.51
3198 3259 0.104855 AGCGTGCAAGTTCAGAGTGA 59.895 50.000 0.59 0.00 0.00 3.41
3199 3260 1.151668 GCGTGCAAGTTCAGAGTGAT 58.848 50.000 0.59 0.00 0.00 3.06
3200 3261 1.127582 GCGTGCAAGTTCAGAGTGATC 59.872 52.381 0.59 0.00 0.00 2.92
3201 3262 2.407090 CGTGCAAGTTCAGAGTGATCA 58.593 47.619 0.00 0.00 0.00 2.92
3202 3263 2.156504 CGTGCAAGTTCAGAGTGATCAC 59.843 50.000 18.47 18.47 0.00 3.06
3203 3264 2.481952 GTGCAAGTTCAGAGTGATCACC 59.518 50.000 22.21 13.46 0.00 4.02
3204 3265 2.079925 GCAAGTTCAGAGTGATCACCC 58.920 52.381 22.21 11.13 0.00 4.61
3205 3266 2.704572 CAAGTTCAGAGTGATCACCCC 58.295 52.381 22.21 14.19 0.00 4.95
3206 3267 0.898320 AGTTCAGAGTGATCACCCCG 59.102 55.000 22.21 10.60 0.00 5.73
3207 3268 0.741221 GTTCAGAGTGATCACCCCGC 60.741 60.000 22.21 9.54 0.00 6.13
3208 3269 1.191489 TTCAGAGTGATCACCCCGCA 61.191 55.000 22.21 1.38 0.00 5.69
3209 3270 1.191489 TCAGAGTGATCACCCCGCAA 61.191 55.000 22.21 0.87 0.00 4.85
3210 3271 0.321564 CAGAGTGATCACCCCGCAAA 60.322 55.000 22.21 0.00 0.00 3.68
3211 3272 0.400213 AGAGTGATCACCCCGCAAAA 59.600 50.000 22.21 0.00 0.00 2.44
3212 3273 1.202879 AGAGTGATCACCCCGCAAAAA 60.203 47.619 22.21 0.00 0.00 1.94
3255 3317 4.576053 CCTGAAGATTTTGTCAGTGACACA 59.424 41.667 25.43 16.81 42.60 3.72
3256 3318 5.484173 TGAAGATTTTGTCAGTGACACAC 57.516 39.130 25.43 15.61 42.60 3.82
3257 3319 5.185454 TGAAGATTTTGTCAGTGACACACT 58.815 37.500 25.43 13.52 46.51 3.55
3328 3392 3.698382 CGGCAGAAGATCGCAGTC 58.302 61.111 0.00 0.00 0.00 3.51
3331 3395 2.520904 GCAGAAGATCGCAGTCGGC 61.521 63.158 0.00 0.00 39.90 5.54
3400 3464 2.434884 CACCGCGACATCAAGGCT 60.435 61.111 8.23 0.00 0.00 4.58
3446 3510 3.791320 TCTGAACCTCAGGTGAACCTAT 58.209 45.455 0.00 0.00 46.65 2.57
3448 3512 3.772025 CTGAACCTCAGGTGAACCTATCT 59.228 47.826 0.00 0.00 46.65 1.98
3449 3513 3.769844 TGAACCTCAGGTGAACCTATCTC 59.230 47.826 0.00 0.00 46.65 2.75
3453 3517 3.373658 CCTCAGGTGAACCTATCTCTCCT 60.374 52.174 0.62 0.00 46.65 3.69
3456 3520 5.202004 TCAGGTGAACCTATCTCTCCTTAC 58.798 45.833 0.62 0.00 46.65 2.34
3480 3551 7.500141 ACATTTTGAGTCAATAAAAACTGCCT 58.500 30.769 6.36 0.00 30.50 4.75
3524 3596 3.068024 TGCCACCAAACAACAATCTTCTC 59.932 43.478 0.00 0.00 0.00 2.87
3666 3756 4.640771 ACAGATTTCTGACTTTGGGCTA 57.359 40.909 14.29 0.00 46.59 3.93
3756 3846 1.605710 GCGCCAGAATACTTCATGCAT 59.394 47.619 0.00 0.00 0.00 3.96
3915 4005 1.153353 GAACTGACCGAATCGCCAAA 58.847 50.000 0.00 0.00 0.00 3.28
4029 4120 1.338337 CCTGAACTCGGCGATGACTAT 59.662 52.381 11.27 0.00 0.00 2.12
4121 4212 1.033746 TCGATGTCCGAGGTACCCAC 61.034 60.000 8.74 2.17 43.23 4.61
4156 4247 9.211485 GTTGCTAGGTTTAAGTTACTGATGTTA 57.789 33.333 0.00 0.00 0.00 2.41
4197 4290 6.594788 AAATATGTCATGCTTTTCAGGTGT 57.405 33.333 0.00 0.00 0.00 4.16
4319 4412 3.870274 TGAATCTTGCTCTCTGTGATGG 58.130 45.455 0.00 0.00 0.00 3.51
4320 4413 3.516700 TGAATCTTGCTCTCTGTGATGGA 59.483 43.478 0.00 0.00 0.00 3.41
4321 4414 4.019950 TGAATCTTGCTCTCTGTGATGGAA 60.020 41.667 0.00 0.00 0.00 3.53
4322 4415 4.774660 ATCTTGCTCTCTGTGATGGAAT 57.225 40.909 0.00 0.00 0.00 3.01
4323 4416 3.870274 TCTTGCTCTCTGTGATGGAATG 58.130 45.455 0.00 0.00 0.00 2.67
4333 4426 5.858381 TCTGTGATGGAATGTAATAGGCTC 58.142 41.667 0.00 0.00 0.00 4.70
4454 4548 5.493133 ACTATGTGCTTTCAAAACGTTGA 57.507 34.783 0.00 0.00 42.12 3.18
4477 4571 1.227853 GGTTGTTGTCCAGCTCCGT 60.228 57.895 0.00 0.00 0.00 4.69
4485 4579 3.068691 CCAGCTCCGTTCCTCCGA 61.069 66.667 0.00 0.00 0.00 4.55
4487 4581 2.282958 AGCTCCGTTCCTCCGACA 60.283 61.111 0.00 0.00 0.00 4.35
4525 4634 8.740123 TTGAGTAAAATGTTTTGTGTCTCCTA 57.260 30.769 1.16 0.00 0.00 2.94
4529 4638 6.783708 AAAATGTTTTGTGTCTCCTACCAA 57.216 33.333 0.00 0.00 0.00 3.67
4538 4647 3.442977 GTGTCTCCTACCAATGTACGAGT 59.557 47.826 0.00 0.00 34.00 4.18
4539 4648 4.637534 GTGTCTCCTACCAATGTACGAGTA 59.362 45.833 0.00 0.00 34.00 2.59
4540 4649 4.880120 TGTCTCCTACCAATGTACGAGTAG 59.120 45.833 0.00 5.07 34.00 2.57
4541 4650 3.881688 TCTCCTACCAATGTACGAGTAGC 59.118 47.826 0.00 0.00 34.00 3.58
4574 4692 4.124851 AGAAACCTAAGACGCGATCATT 57.875 40.909 15.93 3.98 0.00 2.57
4578 4696 3.966154 ACCTAAGACGCGATCATTGTAG 58.034 45.455 15.93 4.05 0.00 2.74
4579 4697 3.630769 ACCTAAGACGCGATCATTGTAGA 59.369 43.478 15.93 0.00 0.00 2.59
4626 4744 2.025887 ACCAAGAGAAATTCCCATCGCT 60.026 45.455 0.00 0.00 0.00 4.93
4627 4745 3.199946 ACCAAGAGAAATTCCCATCGCTA 59.800 43.478 0.00 0.00 0.00 4.26
4629 4747 4.214971 CCAAGAGAAATTCCCATCGCTATG 59.785 45.833 0.00 0.00 0.00 2.23
4630 4748 4.963318 AGAGAAATTCCCATCGCTATGA 57.037 40.909 0.00 0.00 34.84 2.15
4631 4749 5.495926 AGAGAAATTCCCATCGCTATGAT 57.504 39.130 0.00 0.00 38.01 2.45
4632 4750 6.611613 AGAGAAATTCCCATCGCTATGATA 57.388 37.500 0.00 0.00 34.83 2.15
4633 4751 6.638610 AGAGAAATTCCCATCGCTATGATAG 58.361 40.000 0.00 0.00 34.83 2.08
4634 4752 6.212388 AGAGAAATTCCCATCGCTATGATAGT 59.788 38.462 0.00 0.00 34.83 2.12
4635 4753 6.402222 AGAAATTCCCATCGCTATGATAGTC 58.598 40.000 0.00 0.00 34.83 2.59
4639 4757 3.258372 TCCCATCGCTATGATAGTCCAAC 59.742 47.826 0.00 0.00 34.83 3.77
4641 4759 4.503123 CCCATCGCTATGATAGTCCAACAA 60.503 45.833 0.00 0.00 34.83 2.83
4668 4812 7.313646 TCTTAGTTTGTAACCAAGAGATCGAG 58.686 38.462 0.00 0.00 34.87 4.04
4669 4813 5.470047 AGTTTGTAACCAAGAGATCGAGT 57.530 39.130 0.00 0.00 0.00 4.18
4670 4814 5.230942 AGTTTGTAACCAAGAGATCGAGTG 58.769 41.667 0.00 0.00 0.00 3.51
4679 4823 3.305398 AGAGATCGAGTGTTGTGAACC 57.695 47.619 0.00 0.00 0.00 3.62
4710 4868 7.332678 AGAGGCATTTATCTGCAATTTTGAAAC 59.667 33.333 0.00 0.00 44.12 2.78
4711 4869 6.372381 AGGCATTTATCTGCAATTTTGAAACC 59.628 34.615 0.00 0.00 44.12 3.27
4712 4870 6.149142 GGCATTTATCTGCAATTTTGAAACCA 59.851 34.615 0.00 0.00 44.12 3.67
4713 4871 7.238571 GCATTTATCTGCAATTTTGAAACCAG 58.761 34.615 0.00 0.00 41.87 4.00
4716 4874 3.719924 TCTGCAATTTTGAAACCAGCAG 58.280 40.909 14.67 14.67 46.76 4.24
4719 4877 3.870419 TGCAATTTTGAAACCAGCAGTTC 59.130 39.130 0.00 0.00 37.88 3.01
4720 4878 3.870419 GCAATTTTGAAACCAGCAGTTCA 59.130 39.130 0.00 0.00 37.88 3.18
4721 4879 4.260334 GCAATTTTGAAACCAGCAGTTCAC 60.260 41.667 0.00 0.00 37.88 3.18
4722 4880 5.111293 CAATTTTGAAACCAGCAGTTCACT 58.889 37.500 0.00 0.00 37.88 3.41
4723 4881 4.799564 TTTTGAAACCAGCAGTTCACTT 57.200 36.364 0.00 0.00 37.88 3.16
4724 4882 4.799564 TTTGAAACCAGCAGTTCACTTT 57.200 36.364 0.00 0.00 37.88 2.66
4725 4883 4.799564 TTGAAACCAGCAGTTCACTTTT 57.200 36.364 0.00 0.00 37.88 2.27
4726 4884 4.799564 TGAAACCAGCAGTTCACTTTTT 57.200 36.364 0.00 0.00 37.88 1.94
4750 4908 1.744741 GCCTCTCCTTGTGAGCAGC 60.745 63.158 0.00 0.00 41.18 5.25
4752 4910 0.035881 CCTCTCCTTGTGAGCAGCAA 59.964 55.000 0.00 0.00 41.18 3.91
4756 4914 2.358898 TCTCCTTGTGAGCAGCAAAAAC 59.641 45.455 0.00 0.00 41.18 2.43
4759 4917 3.132646 TCCTTGTGAGCAGCAAAAACAAT 59.867 39.130 0.00 0.00 30.90 2.71
4760 4918 3.872771 CCTTGTGAGCAGCAAAAACAATT 59.127 39.130 0.00 0.00 30.90 2.32
4761 4919 4.333372 CCTTGTGAGCAGCAAAAACAATTT 59.667 37.500 0.00 0.00 30.90 1.82
4762 4920 5.163733 CCTTGTGAGCAGCAAAAACAATTTT 60.164 36.000 0.00 0.00 39.30 1.82
4798 4956 0.391263 GGTTCGTTGGAGTAGGCTGG 60.391 60.000 0.00 0.00 0.00 4.85
4802 4960 0.970937 CGTTGGAGTAGGCTGGGAGA 60.971 60.000 0.00 0.00 0.00 3.71
4819 4977 3.253838 ACCCAAGCGGCCCAGTTA 61.254 61.111 0.00 0.00 33.26 2.24
4826 4984 3.211963 CGGCCCAGTTATGCAGCC 61.212 66.667 0.00 0.91 39.66 4.85
4850 5008 1.066716 CCGTTATCCTTCCACCGTTGA 60.067 52.381 0.00 0.00 0.00 3.18
4852 5010 2.671396 CGTTATCCTTCCACCGTTGAAG 59.329 50.000 5.54 5.54 39.13 3.02
4974 5134 3.562232 AACTTGGAACGGGCGGGA 61.562 61.111 0.00 0.00 0.00 5.14
4994 5154 2.281761 AGCAGAAGCACAACCGGG 60.282 61.111 6.32 0.00 45.49 5.73
5037 5197 1.944709 ACGTTCACACCACCTTAAAGC 59.055 47.619 0.00 0.00 0.00 3.51
5060 5220 1.810030 CGCTCGGGTTACAAGCTCC 60.810 63.158 0.00 0.00 33.83 4.70
5094 5254 2.583441 CGAGGCAGTGGGTGGAGAA 61.583 63.158 0.00 0.00 0.00 2.87
5095 5255 1.003233 GAGGCAGTGGGTGGAGAAC 60.003 63.158 0.00 0.00 0.00 3.01
5120 5280 2.185004 TTAAGCTGGTCTGTTGCCTC 57.815 50.000 0.00 0.00 0.00 4.70
5123 5283 1.073897 GCTGGTCTGTTGCCTCCTT 59.926 57.895 0.00 0.00 0.00 3.36
5180 5346 2.661594 CGCATGCTGATGGAATGAATG 58.338 47.619 17.13 0.00 32.67 2.67
5188 5354 4.439700 GCTGATGGAATGAATGGTCTGTTG 60.440 45.833 0.00 0.00 0.00 3.33
5234 5402 3.399330 TGTCGTTCTGGGCTTAGAAAAG 58.601 45.455 6.37 5.02 38.33 2.27
5248 5416 2.519013 AGAAAAGAAAGGCCATTCGCT 58.481 42.857 14.70 8.46 37.74 4.93
5249 5417 3.686016 AGAAAAGAAAGGCCATTCGCTA 58.314 40.909 14.70 0.00 37.74 4.26
5250 5418 3.440522 AGAAAAGAAAGGCCATTCGCTAC 59.559 43.478 14.70 8.54 37.74 3.58
5251 5419 1.751437 AAGAAAGGCCATTCGCTACC 58.249 50.000 14.70 0.00 37.74 3.18
5252 5420 0.618458 AGAAAGGCCATTCGCTACCA 59.382 50.000 14.70 0.00 37.74 3.25
5253 5421 1.017387 GAAAGGCCATTCGCTACCAG 58.983 55.000 5.01 0.00 37.74 4.00
5254 5422 1.032114 AAAGGCCATTCGCTACCAGC 61.032 55.000 5.01 0.00 38.02 4.85
5255 5423 2.124736 GGCCATTCGCTACCAGCA 60.125 61.111 0.00 0.00 42.58 4.41
5256 5424 1.748879 GGCCATTCGCTACCAGCAA 60.749 57.895 0.00 0.00 42.58 3.91
5257 5425 1.312371 GGCCATTCGCTACCAGCAAA 61.312 55.000 0.00 0.00 42.58 3.68
5258 5426 0.179163 GCCATTCGCTACCAGCAAAC 60.179 55.000 0.00 0.00 42.58 2.93
5259 5427 1.453155 CCATTCGCTACCAGCAAACT 58.547 50.000 0.00 0.00 42.58 2.66
5260 5428 2.627945 CCATTCGCTACCAGCAAACTA 58.372 47.619 0.00 0.00 42.58 2.24
5261 5429 3.206150 CCATTCGCTACCAGCAAACTAT 58.794 45.455 0.00 0.00 42.58 2.12
5262 5430 3.002656 CCATTCGCTACCAGCAAACTATG 59.997 47.826 0.00 0.00 42.58 2.23
5263 5431 3.603158 TTCGCTACCAGCAAACTATGA 57.397 42.857 0.00 0.00 42.58 2.15
5264 5432 3.819564 TCGCTACCAGCAAACTATGAT 57.180 42.857 0.00 0.00 42.58 2.45
5265 5433 4.137116 TCGCTACCAGCAAACTATGATT 57.863 40.909 0.00 0.00 42.58 2.57
5266 5434 4.119862 TCGCTACCAGCAAACTATGATTC 58.880 43.478 0.00 0.00 42.58 2.52
5267 5435 3.248602 CGCTACCAGCAAACTATGATTCC 59.751 47.826 0.00 0.00 42.58 3.01
5268 5436 3.565902 GCTACCAGCAAACTATGATTCCC 59.434 47.826 0.00 0.00 41.89 3.97
5269 5437 2.643551 ACCAGCAAACTATGATTCCCG 58.356 47.619 0.00 0.00 0.00 5.14
5270 5438 2.026262 ACCAGCAAACTATGATTCCCGT 60.026 45.455 0.00 0.00 0.00 5.28
5271 5439 2.355756 CCAGCAAACTATGATTCCCGTG 59.644 50.000 0.00 0.00 0.00 4.94
5272 5440 3.270027 CAGCAAACTATGATTCCCGTGA 58.730 45.455 0.00 0.00 0.00 4.35
5273 5441 3.689161 CAGCAAACTATGATTCCCGTGAA 59.311 43.478 0.00 0.00 34.33 3.18
5274 5442 3.941483 AGCAAACTATGATTCCCGTGAAG 59.059 43.478 0.00 0.00 33.05 3.02
5275 5443 3.487544 GCAAACTATGATTCCCGTGAAGC 60.488 47.826 0.00 0.00 37.40 3.86
5282 5450 4.963276 TGATTCCCGTGAAGCAAATAAG 57.037 40.909 0.00 0.00 43.46 1.73
5283 5451 4.331968 TGATTCCCGTGAAGCAAATAAGT 58.668 39.130 0.00 0.00 43.46 2.24
5284 5452 4.155826 TGATTCCCGTGAAGCAAATAAGTG 59.844 41.667 0.00 0.00 43.46 3.16
5285 5453 3.410631 TCCCGTGAAGCAAATAAGTGA 57.589 42.857 0.00 0.00 0.00 3.41
5286 5454 3.745799 TCCCGTGAAGCAAATAAGTGAA 58.254 40.909 0.00 0.00 0.00 3.18
5287 5455 4.331968 TCCCGTGAAGCAAATAAGTGAAT 58.668 39.130 0.00 0.00 0.00 2.57
5288 5456 5.492895 TCCCGTGAAGCAAATAAGTGAATA 58.507 37.500 0.00 0.00 0.00 1.75
5289 5457 5.941058 TCCCGTGAAGCAAATAAGTGAATAA 59.059 36.000 0.00 0.00 0.00 1.40
5290 5458 6.027749 CCCGTGAAGCAAATAAGTGAATAAC 58.972 40.000 0.00 0.00 0.00 1.89
5291 5459 6.128007 CCCGTGAAGCAAATAAGTGAATAACT 60.128 38.462 0.00 0.00 42.60 2.24
5292 5460 7.065324 CCCGTGAAGCAAATAAGTGAATAACTA 59.935 37.037 0.00 0.00 38.56 2.24
5293 5461 7.903431 CCGTGAAGCAAATAAGTGAATAACTAC 59.097 37.037 0.00 0.00 38.56 2.73
5294 5462 8.656849 CGTGAAGCAAATAAGTGAATAACTACT 58.343 33.333 0.00 0.00 38.56 2.57
5295 5463 9.974750 GTGAAGCAAATAAGTGAATAACTACTC 57.025 33.333 0.00 0.00 38.56 2.59
5296 5464 9.162764 TGAAGCAAATAAGTGAATAACTACTCC 57.837 33.333 0.00 0.00 38.56 3.85
5297 5465 8.507524 AAGCAAATAAGTGAATAACTACTCCC 57.492 34.615 0.00 0.00 38.56 4.30
5298 5466 7.054751 AGCAAATAAGTGAATAACTACTCCCC 58.945 38.462 0.00 0.00 38.56 4.81
5299 5467 6.262496 GCAAATAAGTGAATAACTACTCCCCC 59.738 42.308 0.00 0.00 38.56 5.40
5300 5468 7.574607 CAAATAAGTGAATAACTACTCCCCCT 58.425 38.462 0.00 0.00 38.56 4.79
5301 5469 6.997942 ATAAGTGAATAACTACTCCCCCTC 57.002 41.667 0.00 0.00 38.56 4.30
5302 5470 4.348020 AGTGAATAACTACTCCCCCTCA 57.652 45.455 0.00 0.00 37.36 3.86
5303 5471 4.695606 AGTGAATAACTACTCCCCCTCAA 58.304 43.478 0.00 0.00 37.36 3.02
5304 5472 5.098663 AGTGAATAACTACTCCCCCTCAAA 58.901 41.667 0.00 0.00 37.36 2.69
5305 5473 5.550403 AGTGAATAACTACTCCCCCTCAAAA 59.450 40.000 0.00 0.00 37.36 2.44
5306 5474 5.880887 GTGAATAACTACTCCCCCTCAAAAG 59.119 44.000 0.00 0.00 0.00 2.27
5307 5475 5.788533 TGAATAACTACTCCCCCTCAAAAGA 59.211 40.000 0.00 0.00 0.00 2.52
5308 5476 6.273730 TGAATAACTACTCCCCCTCAAAAGAA 59.726 38.462 0.00 0.00 0.00 2.52
5309 5477 6.713731 ATAACTACTCCCCCTCAAAAGAAA 57.286 37.500 0.00 0.00 0.00 2.52
5310 5478 5.397553 AACTACTCCCCCTCAAAAGAAAA 57.602 39.130 0.00 0.00 0.00 2.29
5311 5479 5.397553 ACTACTCCCCCTCAAAAGAAAAA 57.602 39.130 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 9.755064 CGACATCTTCTCAACGTTAATAAATTT 57.245 29.630 0.00 0.00 0.00 1.82
25 26 9.146984 TCGACATCTTCTCAACGTTAATAAATT 57.853 29.630 0.00 0.00 0.00 1.82
27 28 7.811236 AGTCGACATCTTCTCAACGTTAATAAA 59.189 33.333 19.50 0.00 0.00 1.40
28 29 7.272731 CAGTCGACATCTTCTCAACGTTAATAA 59.727 37.037 19.50 0.00 0.00 1.40
29 30 6.745907 CAGTCGACATCTTCTCAACGTTAATA 59.254 38.462 19.50 0.00 0.00 0.98
30 31 5.573282 CAGTCGACATCTTCTCAACGTTAAT 59.427 40.000 19.50 0.00 0.00 1.40
31 32 4.915667 CAGTCGACATCTTCTCAACGTTAA 59.084 41.667 19.50 0.00 0.00 2.01
32 33 4.023450 ACAGTCGACATCTTCTCAACGTTA 60.023 41.667 19.50 0.00 0.00 3.18
33 34 3.243434 ACAGTCGACATCTTCTCAACGTT 60.243 43.478 19.50 0.00 0.00 3.99
35 36 2.935042 ACAGTCGACATCTTCTCAACG 58.065 47.619 19.50 0.00 0.00 4.10
38 39 4.634443 TCGAATACAGTCGACATCTTCTCA 59.366 41.667 19.50 2.33 44.76 3.27
49 50 4.214332 TGATGGAGAGATCGAATACAGTCG 59.786 45.833 0.00 0.00 42.48 4.18
50 51 5.697473 TGATGGAGAGATCGAATACAGTC 57.303 43.478 0.00 0.00 0.00 3.51
52 53 5.689514 GTGTTGATGGAGAGATCGAATACAG 59.310 44.000 0.00 0.00 0.00 2.74
53 54 5.592054 GTGTTGATGGAGAGATCGAATACA 58.408 41.667 0.00 0.00 0.00 2.29
55 56 4.578928 TCGTGTTGATGGAGAGATCGAATA 59.421 41.667 0.00 0.00 0.00 1.75
56 57 3.381590 TCGTGTTGATGGAGAGATCGAAT 59.618 43.478 0.00 0.00 0.00 3.34
57 58 2.752903 TCGTGTTGATGGAGAGATCGAA 59.247 45.455 0.00 0.00 0.00 3.71
58 59 2.365582 TCGTGTTGATGGAGAGATCGA 58.634 47.619 0.00 0.00 0.00 3.59
59 60 2.851805 TCGTGTTGATGGAGAGATCG 57.148 50.000 0.00 0.00 0.00 3.69
60 61 6.018589 TCATATCGTGTTGATGGAGAGATC 57.981 41.667 0.00 0.00 37.99 2.75
61 62 6.410942 TTCATATCGTGTTGATGGAGAGAT 57.589 37.500 0.00 0.00 37.99 2.75
62 63 5.852282 TTCATATCGTGTTGATGGAGAGA 57.148 39.130 0.00 0.00 37.99 3.10
63 64 6.908870 TTTTCATATCGTGTTGATGGAGAG 57.091 37.500 0.00 0.00 37.99 3.20
64 65 6.878923 AGTTTTTCATATCGTGTTGATGGAGA 59.121 34.615 0.00 0.00 37.99 3.71
67 68 7.974675 AGTAGTTTTTCATATCGTGTTGATGG 58.025 34.615 0.00 0.00 37.99 3.51
69 70 9.871238 AGTAGTAGTTTTTCATATCGTGTTGAT 57.129 29.630 0.00 0.00 41.30 2.57
70 71 9.350357 GAGTAGTAGTTTTTCATATCGTGTTGA 57.650 33.333 0.00 0.00 0.00 3.18
72 73 9.701098 TTGAGTAGTAGTTTTTCATATCGTGTT 57.299 29.630 0.00 0.00 0.00 3.32
73 74 9.355215 CTTGAGTAGTAGTTTTTCATATCGTGT 57.645 33.333 0.00 0.00 0.00 4.49
74 75 9.569167 TCTTGAGTAGTAGTTTTTCATATCGTG 57.431 33.333 0.00 0.00 0.00 4.35
81 82 8.242053 CGAGGTATCTTGAGTAGTAGTTTTTCA 58.758 37.037 0.00 0.00 0.00 2.69
83 84 7.034397 GCGAGGTATCTTGAGTAGTAGTTTTT 58.966 38.462 0.00 0.00 0.00 1.94
84 85 6.152323 TGCGAGGTATCTTGAGTAGTAGTTTT 59.848 38.462 0.00 0.00 0.00 2.43
85 86 5.651139 TGCGAGGTATCTTGAGTAGTAGTTT 59.349 40.000 0.00 0.00 0.00 2.66
87 88 4.778579 TGCGAGGTATCTTGAGTAGTAGT 58.221 43.478 0.00 0.00 0.00 2.73
88 89 5.752892 TTGCGAGGTATCTTGAGTAGTAG 57.247 43.478 0.00 0.00 0.00 2.57
90 91 5.401531 TTTTGCGAGGTATCTTGAGTAGT 57.598 39.130 0.00 0.00 0.00 2.73
142 143 9.352784 CGAAGGAATTTGCATGAAGTTTTTATA 57.647 29.630 0.00 0.00 0.00 0.98
143 144 8.087750 TCGAAGGAATTTGCATGAAGTTTTTAT 58.912 29.630 0.00 0.00 0.00 1.40
144 145 7.429633 TCGAAGGAATTTGCATGAAGTTTTTA 58.570 30.769 0.00 0.00 0.00 1.52
146 147 5.841810 TCGAAGGAATTTGCATGAAGTTTT 58.158 33.333 0.00 0.00 0.00 2.43
147 148 5.452078 TCGAAGGAATTTGCATGAAGTTT 57.548 34.783 0.00 0.00 0.00 2.66
148 149 5.649782 ATCGAAGGAATTTGCATGAAGTT 57.350 34.783 0.00 0.00 0.00 2.66
149 150 6.757897 TTATCGAAGGAATTTGCATGAAGT 57.242 33.333 0.00 0.00 0.00 3.01
151 152 7.336679 TCTCTTTATCGAAGGAATTTGCATGAA 59.663 33.333 0.00 0.00 35.98 2.57
152 153 6.823182 TCTCTTTATCGAAGGAATTTGCATGA 59.177 34.615 0.00 0.00 35.98 3.07
154 155 6.238211 CGTCTCTTTATCGAAGGAATTTGCAT 60.238 38.462 0.00 0.00 35.98 3.96
156 157 5.063564 ACGTCTCTTTATCGAAGGAATTTGC 59.936 40.000 0.00 0.00 35.98 3.68
158 159 5.811100 GGACGTCTCTTTATCGAAGGAATTT 59.189 40.000 16.46 0.00 35.98 1.82
159 160 5.349809 GGACGTCTCTTTATCGAAGGAATT 58.650 41.667 16.46 0.00 35.98 2.17
161 162 3.129988 GGGACGTCTCTTTATCGAAGGAA 59.870 47.826 16.46 0.00 35.98 3.36
162 163 2.686915 GGGACGTCTCTTTATCGAAGGA 59.313 50.000 16.46 0.00 35.98 3.36
163 164 3.081329 GGGACGTCTCTTTATCGAAGG 57.919 52.381 16.46 0.00 35.98 3.46
189 190 3.364964 GGCTGAAGGTGACAATTACGTTG 60.365 47.826 0.00 0.00 43.64 4.10
190 191 2.812011 GGCTGAAGGTGACAATTACGTT 59.188 45.455 0.00 0.00 0.00 3.99
192 193 2.422597 TGGCTGAAGGTGACAATTACG 58.577 47.619 0.00 0.00 0.00 3.18
193 194 4.458989 TCATTGGCTGAAGGTGACAATTAC 59.541 41.667 0.00 0.00 30.00 1.89
194 195 4.661222 TCATTGGCTGAAGGTGACAATTA 58.339 39.130 0.00 0.00 30.00 1.40
195 196 3.499338 TCATTGGCTGAAGGTGACAATT 58.501 40.909 0.00 0.00 30.00 2.32
196 197 3.159213 TCATTGGCTGAAGGTGACAAT 57.841 42.857 0.00 0.00 32.43 2.71
197 198 2.622942 GTTCATTGGCTGAAGGTGACAA 59.377 45.455 0.00 0.00 44.44 3.18
198 199 2.229792 GTTCATTGGCTGAAGGTGACA 58.770 47.619 0.00 0.00 44.44 3.58
200 201 1.522668 CGTTCATTGGCTGAAGGTGA 58.477 50.000 2.14 0.00 44.44 4.02
204 205 2.158449 GTCTGACGTTCATTGGCTGAAG 59.842 50.000 0.00 0.00 44.44 3.02
205 206 2.143122 GTCTGACGTTCATTGGCTGAA 58.857 47.619 0.00 0.00 41.61 3.02
206 207 1.608025 GGTCTGACGTTCATTGGCTGA 60.608 52.381 1.07 0.00 0.00 4.26
207 208 0.798776 GGTCTGACGTTCATTGGCTG 59.201 55.000 1.07 0.00 0.00 4.85
208 209 0.687354 AGGTCTGACGTTCATTGGCT 59.313 50.000 1.07 0.00 0.00 4.75
209 210 2.094182 TCTAGGTCTGACGTTCATTGGC 60.094 50.000 8.42 0.00 0.00 4.52
210 211 3.193691 AGTCTAGGTCTGACGTTCATTGG 59.806 47.826 8.42 0.00 39.24 3.16
213 214 4.082136 GGAAAGTCTAGGTCTGACGTTCAT 60.082 45.833 18.45 0.00 46.73 2.57
215 216 3.255149 TGGAAAGTCTAGGTCTGACGTTC 59.745 47.826 8.42 11.88 45.36 3.95
216 217 3.005578 GTGGAAAGTCTAGGTCTGACGTT 59.994 47.826 8.42 0.00 38.44 3.99
217 218 2.557490 GTGGAAAGTCTAGGTCTGACGT 59.443 50.000 8.19 8.19 39.24 4.34
218 219 2.094649 GGTGGAAAGTCTAGGTCTGACG 60.095 54.545 1.07 0.00 39.24 4.35
219 220 2.234168 GGGTGGAAAGTCTAGGTCTGAC 59.766 54.545 0.00 0.00 34.88 3.51
220 221 2.537143 GGGTGGAAAGTCTAGGTCTGA 58.463 52.381 0.00 0.00 0.00 3.27
221 222 1.555533 GGGGTGGAAAGTCTAGGTCTG 59.444 57.143 0.00 0.00 0.00 3.51
223 224 1.555533 CAGGGGTGGAAAGTCTAGGTC 59.444 57.143 0.00 0.00 0.00 3.85
224 225 1.657804 CAGGGGTGGAAAGTCTAGGT 58.342 55.000 0.00 0.00 0.00 3.08
226 227 0.984230 TGCAGGGGTGGAAAGTCTAG 59.016 55.000 0.00 0.00 0.00 2.43
227 228 1.073284 GTTGCAGGGGTGGAAAGTCTA 59.927 52.381 0.00 0.00 0.00 2.59
228 229 0.178990 GTTGCAGGGGTGGAAAGTCT 60.179 55.000 0.00 0.00 0.00 3.24
229 230 0.178990 AGTTGCAGGGGTGGAAAGTC 60.179 55.000 0.00 0.00 0.00 3.01
230 231 0.261696 AAGTTGCAGGGGTGGAAAGT 59.738 50.000 0.00 0.00 0.00 2.66
231 232 2.162681 CTAAGTTGCAGGGGTGGAAAG 58.837 52.381 0.00 0.00 0.00 2.62
232 233 1.821666 GCTAAGTTGCAGGGGTGGAAA 60.822 52.381 0.00 0.00 0.00 3.13
233 234 0.251165 GCTAAGTTGCAGGGGTGGAA 60.251 55.000 0.00 0.00 0.00 3.53
235 236 1.074775 TGCTAAGTTGCAGGGGTGG 59.925 57.895 0.00 0.00 38.12 4.61
236 237 1.577328 CGTGCTAAGTTGCAGGGGTG 61.577 60.000 10.31 0.00 44.20 4.61
237 238 1.302511 CGTGCTAAGTTGCAGGGGT 60.303 57.895 10.31 0.00 44.20 4.95
238 239 1.003839 TCGTGCTAAGTTGCAGGGG 60.004 57.895 15.20 4.49 45.45 4.79
239 240 0.602638 TGTCGTGCTAAGTTGCAGGG 60.603 55.000 15.20 6.24 45.45 4.45
240 241 1.069906 GTTGTCGTGCTAAGTTGCAGG 60.070 52.381 11.37 11.37 46.37 4.85
241 242 1.867233 AGTTGTCGTGCTAAGTTGCAG 59.133 47.619 0.97 0.00 44.20 4.41
243 244 3.363673 GGTAAGTTGTCGTGCTAAGTTGC 60.364 47.826 0.00 0.00 0.00 4.17
244 245 3.121126 CGGTAAGTTGTCGTGCTAAGTTG 60.121 47.826 0.00 0.00 0.00 3.16
245 246 3.054878 CGGTAAGTTGTCGTGCTAAGTT 58.945 45.455 0.00 0.00 0.00 2.66
265 266 1.298157 ACATTGCATCCGTGTGGTCG 61.298 55.000 0.00 0.00 36.30 4.79
267 268 2.083774 CTAACATTGCATCCGTGTGGT 58.916 47.619 0.00 0.00 36.30 4.16
269 270 1.202177 GCCTAACATTGCATCCGTGTG 60.202 52.381 0.00 0.00 0.00 3.82
270 271 1.094785 GCCTAACATTGCATCCGTGT 58.905 50.000 0.00 0.00 0.00 4.49
271 272 0.381801 GGCCTAACATTGCATCCGTG 59.618 55.000 0.00 0.00 0.00 4.94
285 286 1.179174 CCATCATCGGAGTCGGCCTA 61.179 60.000 0.00 0.00 36.95 3.93
296 297 2.298629 CGCTGTCGCTCCATCATCG 61.299 63.158 0.00 0.00 0.00 3.84
299 300 4.819761 GCCGCTGTCGCTCCATCA 62.820 66.667 0.00 0.00 0.00 3.07
313 315 1.305201 AATATAGCCAAACACCGCCG 58.695 50.000 0.00 0.00 0.00 6.46
315 317 3.497262 GTCCTAATATAGCCAAACACCGC 59.503 47.826 0.00 0.00 0.00 5.68
413 416 2.110721 ACAAATGGCCCTCCTTTCTTCT 59.889 45.455 0.00 0.00 0.00 2.85
417 420 3.769300 ACATAACAAATGGCCCTCCTTTC 59.231 43.478 0.00 0.00 0.00 2.62
421 424 5.631119 AGTATACATAACAAATGGCCCTCC 58.369 41.667 0.00 0.00 0.00 4.30
422 425 6.998673 AGAAGTATACATAACAAATGGCCCTC 59.001 38.462 0.00 0.00 0.00 4.30
423 426 6.772716 CAGAAGTATACATAACAAATGGCCCT 59.227 38.462 0.00 0.00 0.00 5.19
426 429 9.503427 GAAACAGAAGTATACATAACAAATGGC 57.497 33.333 5.50 0.00 0.00 4.40
437 440 8.706035 GCTTTTCTAACGAAACAGAAGTATACA 58.294 33.333 5.50 0.00 38.77 2.29
438 441 8.706035 TGCTTTTCTAACGAAACAGAAGTATAC 58.294 33.333 0.00 0.00 38.77 1.47
440 443 7.441458 ACTGCTTTTCTAACGAAACAGAAGTAT 59.559 33.333 10.48 0.00 38.77 2.12
543 550 5.010516 CCGATCTAATCTGACATCTCTGGTT 59.989 44.000 0.00 0.00 0.00 3.67
746 756 2.750237 GGCGACCACCATGGAACC 60.750 66.667 21.47 6.23 40.96 3.62
778 789 0.609957 ATTTAGCAGCAGCACCAGCA 60.610 50.000 3.17 0.00 45.49 4.41
779 790 0.179145 CATTTAGCAGCAGCACCAGC 60.179 55.000 3.17 0.00 45.49 4.85
780 791 0.454600 CCATTTAGCAGCAGCACCAG 59.545 55.000 3.17 0.00 45.49 4.00
781 792 1.597797 GCCATTTAGCAGCAGCACCA 61.598 55.000 3.17 0.00 45.49 4.17
782 793 1.140375 GCCATTTAGCAGCAGCACC 59.860 57.895 3.17 0.00 45.49 5.01
783 794 1.140375 GGCCATTTAGCAGCAGCAC 59.860 57.895 3.17 0.00 45.49 4.40
784 795 0.685131 ATGGCCATTTAGCAGCAGCA 60.685 50.000 14.09 0.00 45.49 4.41
785 796 0.031721 GATGGCCATTTAGCAGCAGC 59.968 55.000 21.84 0.00 42.56 5.25
786 797 1.066605 GTGATGGCCATTTAGCAGCAG 59.933 52.381 21.84 0.00 0.00 4.24
787 798 1.105457 GTGATGGCCATTTAGCAGCA 58.895 50.000 21.84 8.42 0.00 4.41
788 799 1.396653 AGTGATGGCCATTTAGCAGC 58.603 50.000 21.84 5.45 0.00 5.25
789 800 2.545526 CGTAGTGATGGCCATTTAGCAG 59.454 50.000 21.84 7.21 0.00 4.24
790 801 2.093181 ACGTAGTGATGGCCATTTAGCA 60.093 45.455 21.84 10.47 42.51 3.49
810 821 3.072038 AGGTGGTGGTTAGTTAGTTGGAC 59.928 47.826 0.00 0.00 0.00 4.02
829 840 6.226787 CAGTGTAGTGAGAATTGAGAAAGGT 58.773 40.000 0.00 0.00 0.00 3.50
833 844 4.991056 GTGCAGTGTAGTGAGAATTGAGAA 59.009 41.667 0.00 0.00 0.00 2.87
834 845 4.281941 AGTGCAGTGTAGTGAGAATTGAGA 59.718 41.667 0.00 0.00 0.00 3.27
838 849 3.579709 CGAGTGCAGTGTAGTGAGAATT 58.420 45.455 0.00 0.00 0.00 2.17
839 850 2.672478 GCGAGTGCAGTGTAGTGAGAAT 60.672 50.000 0.00 0.00 42.15 2.40
840 851 1.335964 GCGAGTGCAGTGTAGTGAGAA 60.336 52.381 0.00 0.00 42.15 2.87
931 957 2.179517 CTGCGACCAGAGGACGAC 59.820 66.667 11.77 4.24 42.79 4.34
940 966 2.345991 GGTTAGTGGCTGCGACCA 59.654 61.111 11.29 0.00 37.38 4.02
999 1034 0.179000 ACTCCTCAATGGCGTCCATC 59.821 55.000 11.08 0.00 44.40 3.51
1066 1107 2.158900 CCAGTATCCTCGAACCAAGCAT 60.159 50.000 0.00 0.00 0.00 3.79
1074 1115 1.721664 CGCCGACCAGTATCCTCGAA 61.722 60.000 0.00 0.00 0.00 3.71
1113 1154 2.813042 GACAGCAGCTCGGAGCAC 60.813 66.667 29.88 21.22 45.56 4.40
1203 1245 4.340666 TCCATGCAGCAACAGAAGTAAAAA 59.659 37.500 0.00 0.00 0.00 1.94
1212 1254 2.353889 GACTGTATCCATGCAGCAACAG 59.646 50.000 18.68 18.68 43.18 3.16
1231 1273 7.558137 CAAATCATTAGCACAACAACAAAGAC 58.442 34.615 0.00 0.00 0.00 3.01
1248 1290 5.237779 CCAAGAACAGCAAAAGCAAATCATT 59.762 36.000 0.00 0.00 0.00 2.57
1287 1331 2.623763 TCCCCCTCCCTCCTGCTA 60.624 66.667 0.00 0.00 0.00 3.49
1288 1332 4.101077 CTCCCCCTCCCTCCTGCT 62.101 72.222 0.00 0.00 0.00 4.24
1339 1383 1.333177 ACTCCCCGAGCATGTAGATC 58.667 55.000 0.00 0.00 32.04 2.75
1420 1464 5.857268 AGAAGCTTGGTAAACAAATTGCAT 58.143 33.333 2.10 0.00 38.91 3.96
1485 1529 4.336889 AGAACTGAACACCGAAGATCAA 57.663 40.909 0.00 0.00 0.00 2.57
1493 1537 6.780706 ATGTAAACTAAGAACTGAACACCG 57.219 37.500 0.00 0.00 0.00 4.94
1538 1582 4.584325 TGTTTTCACCAGAAGAGAAATGGG 59.416 41.667 0.00 0.00 38.48 4.00
1539 1583 5.300286 ACTGTTTTCACCAGAAGAGAAATGG 59.700 40.000 0.00 0.00 40.10 3.16
1570 1614 3.013921 ACGAACTTTGCTTCCAAGTTGA 58.986 40.909 3.87 0.00 31.52 3.18
1589 1633 4.796312 CCAAACTAAAAACCAGTGAACACG 59.204 41.667 0.00 0.00 36.20 4.49
1593 1637 4.382147 GCCACCAAACTAAAAACCAGTGAA 60.382 41.667 0.00 0.00 0.00 3.18
1605 1650 2.371841 ACAGAGACATGCCACCAAACTA 59.628 45.455 0.00 0.00 0.00 2.24
1668 1713 4.428294 TGGATGAGGAAGCATAAAGGAG 57.572 45.455 0.00 0.00 0.00 3.69
1711 1756 0.037975 CAGTCCCAATTTGGCAGCAC 60.038 55.000 10.10 3.85 35.79 4.40
1734 1779 8.854614 AGCAGTAATAATAGGCTTAAATGGAG 57.145 34.615 0.00 0.00 0.00 3.86
1757 1810 1.391826 GTTTCAGCTAGACGCAGAAGC 59.608 52.381 0.00 0.00 43.65 3.86
1768 1821 5.183140 GCTCATAACCCTTTTGTTTCAGCTA 59.817 40.000 0.00 0.00 0.00 3.32
1792 1845 6.306643 AGGGAGAGAAAACAGAGGATAAAG 57.693 41.667 0.00 0.00 0.00 1.85
1827 1880 1.146774 TGGCCTCCAAATTGACCTGAA 59.853 47.619 3.32 0.00 0.00 3.02
1828 1881 0.776810 TGGCCTCCAAATTGACCTGA 59.223 50.000 3.32 0.00 0.00 3.86
1924 1977 7.210174 TGTGATATTTACTCCTTGATCTTCCG 58.790 38.462 0.00 0.00 0.00 4.30
2242 2298 0.391793 GGTTGCTACTCTGGGTCTGC 60.392 60.000 0.00 0.00 0.00 4.26
2278 2334 5.342259 GTGCTGAATATTTTCACCGTCAAAC 59.658 40.000 0.00 0.00 36.94 2.93
2284 2340 8.687824 AAAATAAGTGCTGAATATTTTCACCG 57.312 30.769 10.23 0.00 36.94 4.94
2310 2366 5.009410 ACATGCTGGTTTTCAGAAGAAGAAG 59.991 40.000 0.00 0.00 46.18 2.85
2335 2391 3.251571 GAATTAGAACGTGAACGAGCCT 58.748 45.455 10.26 5.86 43.02 4.58
2336 2392 2.991190 TGAATTAGAACGTGAACGAGCC 59.009 45.455 10.26 0.00 43.02 4.70
2456 2515 2.359602 TCTTCCTCGTCGCCGTCT 60.360 61.111 0.00 0.00 35.01 4.18
2520 2579 0.111061 TCTTCAGTGGCCTGCACATT 59.889 50.000 3.32 0.00 38.66 2.71
2521 2580 0.322277 CTCTTCAGTGGCCTGCACAT 60.322 55.000 3.32 0.00 38.66 3.21
2522 2581 1.071987 CTCTTCAGTGGCCTGCACA 59.928 57.895 3.32 0.00 38.66 4.57
2523 2582 1.072159 ACTCTTCAGTGGCCTGCAC 59.928 57.895 3.32 0.00 38.66 4.57
2557 2616 2.487934 GGCTCATCGTGTCATTGCTAT 58.512 47.619 0.00 0.00 0.00 2.97
2679 2738 2.440539 TCTTCAGAGAACGTTGAGCC 57.559 50.000 5.00 0.00 0.00 4.70
2762 2821 7.712204 AAAATAAGTTACCAACATACCTGGG 57.288 36.000 0.00 0.00 38.36 4.45
2767 2826 7.758076 GGCCTGAAAAATAAGTTACCAACATAC 59.242 37.037 0.00 0.00 0.00 2.39
2768 2827 7.672239 AGGCCTGAAAAATAAGTTACCAACATA 59.328 33.333 3.11 0.00 0.00 2.29
2769 2828 6.496911 AGGCCTGAAAAATAAGTTACCAACAT 59.503 34.615 3.11 0.00 0.00 2.71
2770 2829 5.836358 AGGCCTGAAAAATAAGTTACCAACA 59.164 36.000 3.11 0.00 0.00 3.33
2824 2884 7.426456 GCATGATACGTACAAAATTCTCTGTTG 59.574 37.037 0.00 0.00 0.00 3.33
2826 2886 6.593770 TGCATGATACGTACAAAATTCTCTGT 59.406 34.615 0.00 0.00 0.00 3.41
2838 2898 4.035091 TGCTGGATTTTGCATGATACGTAC 59.965 41.667 0.00 0.00 33.94 3.67
2839 2899 4.195416 TGCTGGATTTTGCATGATACGTA 58.805 39.130 0.00 0.00 33.94 3.57
2840 2900 3.016031 TGCTGGATTTTGCATGATACGT 58.984 40.909 0.00 0.00 33.94 3.57
2841 2901 3.696281 TGCTGGATTTTGCATGATACG 57.304 42.857 0.00 0.00 33.94 3.06
2900 2961 3.580458 CCCTCTCCCCACTATATTGTCTG 59.420 52.174 0.00 0.00 0.00 3.51
2904 2965 2.269940 CCCCCTCTCCCCACTATATTG 58.730 57.143 0.00 0.00 0.00 1.90
2973 3034 2.032528 TTGGCCAGCCTCTTCACG 59.967 61.111 5.11 0.00 36.94 4.35
3072 3133 2.202987 CAGCATCCGAGCAGGTCC 60.203 66.667 0.00 0.00 41.99 4.46
3144 3205 3.825833 GATACCGTGGAGCGCCGAG 62.826 68.421 2.29 0.00 39.71 4.63
3163 3224 3.365264 GCACGCTGACTGAAATTCATTCA 60.365 43.478 14.00 14.00 45.71 2.57
3181 3242 2.156504 GTGATCACTCTGAACTTGCACG 59.843 50.000 18.83 0.00 0.00 5.34
3186 3247 1.276421 CGGGGTGATCACTCTGAACTT 59.724 52.381 27.76 0.00 40.65 2.66
3187 3248 0.898320 CGGGGTGATCACTCTGAACT 59.102 55.000 27.76 0.00 40.65 3.01
3188 3249 0.741221 GCGGGGTGATCACTCTGAAC 60.741 60.000 34.22 16.31 40.65 3.18
3189 3250 1.191489 TGCGGGGTGATCACTCTGAA 61.191 55.000 34.22 24.33 40.65 3.02
3190 3251 1.191489 TTGCGGGGTGATCACTCTGA 61.191 55.000 34.22 18.23 40.65 3.27
3191 3252 0.321564 TTTGCGGGGTGATCACTCTG 60.322 55.000 27.47 27.47 41.13 3.35
3192 3253 0.400213 TTTTGCGGGGTGATCACTCT 59.600 50.000 24.63 0.00 30.95 3.24
3193 3254 1.243902 TTTTTGCGGGGTGATCACTC 58.756 50.000 24.50 21.46 0.00 3.51
3194 3255 3.430473 TTTTTGCGGGGTGATCACT 57.570 47.368 24.50 0.00 0.00 3.41
3212 3273 4.752101 CAGGTCGATCACTCTGAACTTTTT 59.248 41.667 0.00 0.00 0.00 1.94
3213 3274 4.039245 TCAGGTCGATCACTCTGAACTTTT 59.961 41.667 0.00 0.00 32.46 2.27
3214 3275 3.574396 TCAGGTCGATCACTCTGAACTTT 59.426 43.478 0.00 0.00 32.46 2.66
3400 3464 0.888619 CGCCGAGGAGGATATTAGCA 59.111 55.000 0.00 0.00 45.00 3.49
3453 3517 9.255304 GGCAGTTTTTATTGACTCAAAATGTAA 57.745 29.630 0.00 0.00 0.00 2.41
3456 3520 7.951530 AGGCAGTTTTTATTGACTCAAAATG 57.048 32.000 0.00 0.00 0.00 2.32
3480 3551 8.470805 TGGCAACAGTAGACTTTTTGATAAAAA 58.529 29.630 5.36 0.00 46.17 1.94
3500 3572 3.177997 AGATTGTTGTTTGGTGGCAAC 57.822 42.857 0.00 0.00 43.60 4.17
3503 3575 3.319122 AGAGAAGATTGTTGTTTGGTGGC 59.681 43.478 0.00 0.00 0.00 5.01
3666 3756 1.830477 TGTTTTGGAAGCCACTTTGCT 59.170 42.857 0.00 0.00 45.43 3.91
3756 3846 1.999735 GTCTTTTCATCGACGATGCCA 59.000 47.619 28.87 17.02 39.63 4.92
3904 3994 2.223144 TGTTCTGTTCTTTGGCGATTCG 59.777 45.455 0.62 0.62 0.00 3.34
3933 4023 5.822519 AGACAAAGAGAGCAAACACACATAA 59.177 36.000 0.00 0.00 0.00 1.90
3950 4040 3.569701 TGGCTTTGCCTAGAAAGACAAAG 59.430 43.478 9.46 11.69 45.98 2.77
3952 4042 3.222173 TGGCTTTGCCTAGAAAGACAA 57.778 42.857 9.46 0.00 45.98 3.18
4029 4120 1.345741 CTCTTCAGCTGGTCCTTGTCA 59.654 52.381 15.13 0.00 0.00 3.58
4086 4177 4.211502 GATGGCCGCCACATTGCC 62.212 66.667 16.16 0.00 45.56 4.52
4121 4212 8.723942 AACTTAAACCTAGCAACTATGATGAG 57.276 34.615 0.00 0.00 0.00 2.90
4197 4290 1.946768 GTTGGTAGACAGCAAGTGCAA 59.053 47.619 6.00 0.00 42.54 4.08
4262 4355 1.899142 TCATCCATGTCGTTGACCTCA 59.101 47.619 0.00 0.00 0.00 3.86
4322 4415 9.914834 ACACCAAAATAAATAGAGCCTATTACA 57.085 29.630 7.58 1.75 0.00 2.41
4333 4426 5.971202 GCCACATCGACACCAAAATAAATAG 59.029 40.000 0.00 0.00 0.00 1.73
4431 4525 5.395486 GTCAACGTTTTGAAAGCACATAGTC 59.605 40.000 0.00 0.00 43.52 2.59
4454 4548 0.185901 AGCTGGACAACAACCCATGT 59.814 50.000 0.00 0.00 46.82 3.21
4477 4571 2.500229 GGTTTGTCATTGTCGGAGGAA 58.500 47.619 0.00 0.00 0.00 3.36
4485 4579 6.627395 TTTACTCAATCGGTTTGTCATTGT 57.373 33.333 0.00 0.00 36.65 2.71
4487 4581 7.657336 ACATTTTACTCAATCGGTTTGTCATT 58.343 30.769 0.00 0.00 36.65 2.57
4548 4666 3.986277 TCGCGTCTTAGGTTTCTTTTCT 58.014 40.909 5.77 0.00 0.00 2.52
4549 4667 4.387862 TGATCGCGTCTTAGGTTTCTTTTC 59.612 41.667 5.77 0.00 0.00 2.29
4554 4672 3.617263 ACAATGATCGCGTCTTAGGTTTC 59.383 43.478 5.77 0.00 0.00 2.78
4557 4675 2.961526 ACAATGATCGCGTCTTAGGT 57.038 45.000 5.77 0.00 0.00 3.08
4558 4676 4.224715 TCTACAATGATCGCGTCTTAGG 57.775 45.455 5.77 0.00 0.00 2.69
4559 4677 6.403615 GTTTTCTACAATGATCGCGTCTTAG 58.596 40.000 5.77 4.07 0.00 2.18
4560 4678 5.004061 CGTTTTCTACAATGATCGCGTCTTA 59.996 40.000 5.77 0.00 0.00 2.10
4567 4685 5.509605 TCACACGTTTTCTACAATGATCG 57.490 39.130 0.00 0.00 0.00 3.69
4574 4692 9.047371 TCTTTTTCATATCACACGTTTTCTACA 57.953 29.630 0.00 0.00 0.00 2.74
4601 4719 5.763204 GCGATGGGAATTTCTCTTGGTTATA 59.237 40.000 0.00 0.00 0.00 0.98
4615 4733 4.096681 TGGACTATCATAGCGATGGGAAT 58.903 43.478 6.98 0.00 36.93 3.01
4620 4738 6.648310 AGATTTGTTGGACTATCATAGCGATG 59.352 38.462 0.00 0.00 35.39 3.84
4668 4812 2.030805 GCCTCTGAATGGTTCACAACAC 60.031 50.000 0.00 0.00 35.46 3.32
4669 4813 2.229792 GCCTCTGAATGGTTCACAACA 58.770 47.619 0.00 0.00 35.46 3.33
4670 4814 2.229792 TGCCTCTGAATGGTTCACAAC 58.770 47.619 0.00 0.00 35.46 3.32
4679 4823 5.509716 TTGCAGATAAATGCCTCTGAATG 57.490 39.130 3.84 0.00 45.91 2.67
4736 4894 2.099592 TGTTTTTGCTGCTCACAAGGAG 59.900 45.455 0.00 0.00 46.93 3.69
4764 4922 8.223177 TCCAACGAACCACTATCTTTTTAAAA 57.777 30.769 0.00 0.00 0.00 1.52
4765 4923 7.499895 ACTCCAACGAACCACTATCTTTTTAAA 59.500 33.333 0.00 0.00 0.00 1.52
4766 4924 6.993902 ACTCCAACGAACCACTATCTTTTTAA 59.006 34.615 0.00 0.00 0.00 1.52
4767 4925 6.527423 ACTCCAACGAACCACTATCTTTTTA 58.473 36.000 0.00 0.00 0.00 1.52
4776 4934 0.320697 GCCTACTCCAACGAACCACT 59.679 55.000 0.00 0.00 0.00 4.00
4802 4960 2.612493 ATAACTGGGCCGCTTGGGT 61.612 57.895 0.00 0.00 38.44 4.51
4819 4977 4.189580 ATAACGGGCCGGCTGCAT 62.190 61.111 31.78 13.30 43.89 3.96
4826 4984 1.523032 GTGGAAGGATAACGGGCCG 60.523 63.158 27.06 27.06 0.00 6.13
4850 5008 3.670377 GCGAAAACTGCCCGCCTT 61.670 61.111 0.00 0.00 42.77 4.35
4902 5060 1.566018 GGCGTCACGGGCTATAATGC 61.566 60.000 0.00 0.00 0.00 3.56
4974 5134 1.893808 CGGTTGTGCTTCTGCTGGT 60.894 57.895 0.00 0.00 40.48 4.00
5066 5226 4.218578 CTGCCTCGCCGAGCTCAT 62.219 66.667 15.40 0.00 0.00 2.90
5086 5246 3.946308 GCTTAAATAGCGTTCTCCACC 57.054 47.619 0.00 0.00 40.71 4.61
5120 5280 2.187946 CCACCTCGCCTAGCAAGG 59.812 66.667 0.00 0.00 46.76 3.61
5123 5283 2.219449 TAGTCCCACCTCGCCTAGCA 62.219 60.000 0.00 0.00 0.00 3.49
5234 5402 1.017387 CTGGTAGCGAATGGCCTTTC 58.983 55.000 19.09 19.09 45.17 2.62
5248 5416 3.199071 ACGGGAATCATAGTTTGCTGGTA 59.801 43.478 0.00 0.00 0.00 3.25
5249 5417 2.026262 ACGGGAATCATAGTTTGCTGGT 60.026 45.455 0.00 0.00 0.00 4.00
5250 5418 2.355756 CACGGGAATCATAGTTTGCTGG 59.644 50.000 0.00 0.00 0.00 4.85
5251 5419 3.270027 TCACGGGAATCATAGTTTGCTG 58.730 45.455 0.00 0.00 0.00 4.41
5252 5420 3.627395 TCACGGGAATCATAGTTTGCT 57.373 42.857 0.00 0.00 0.00 3.91
5253 5421 3.487544 GCTTCACGGGAATCATAGTTTGC 60.488 47.826 0.00 0.00 31.34 3.68
5254 5422 3.689161 TGCTTCACGGGAATCATAGTTTG 59.311 43.478 0.00 0.00 31.34 2.93
5255 5423 3.950397 TGCTTCACGGGAATCATAGTTT 58.050 40.909 0.00 0.00 31.34 2.66
5256 5424 3.627395 TGCTTCACGGGAATCATAGTT 57.373 42.857 0.00 0.00 31.34 2.24
5257 5425 3.627395 TTGCTTCACGGGAATCATAGT 57.373 42.857 4.54 0.00 30.00 2.12
5258 5426 6.260936 ACTTATTTGCTTCACGGGAATCATAG 59.739 38.462 4.54 3.75 30.00 2.23
5259 5427 6.038161 CACTTATTTGCTTCACGGGAATCATA 59.962 38.462 4.54 0.49 30.00 2.15
5260 5428 4.949856 ACTTATTTGCTTCACGGGAATCAT 59.050 37.500 4.54 0.00 30.00 2.45
5261 5429 4.155826 CACTTATTTGCTTCACGGGAATCA 59.844 41.667 0.00 0.00 31.34 2.57
5262 5430 4.394920 TCACTTATTTGCTTCACGGGAATC 59.605 41.667 0.00 0.00 31.34 2.52
5263 5431 4.331968 TCACTTATTTGCTTCACGGGAAT 58.668 39.130 0.00 0.00 31.34 3.01
5264 5432 3.745799 TCACTTATTTGCTTCACGGGAA 58.254 40.909 0.00 0.00 0.00 3.97
5265 5433 3.410631 TCACTTATTTGCTTCACGGGA 57.589 42.857 0.00 0.00 0.00 5.14
5266 5434 4.701956 ATTCACTTATTTGCTTCACGGG 57.298 40.909 0.00 0.00 0.00 5.28
5267 5435 6.842163 AGTTATTCACTTATTTGCTTCACGG 58.158 36.000 0.00 0.00 27.32 4.94
5268 5436 8.656849 AGTAGTTATTCACTTATTTGCTTCACG 58.343 33.333 0.00 0.00 36.88 4.35
5269 5437 9.974750 GAGTAGTTATTCACTTATTTGCTTCAC 57.025 33.333 0.00 0.00 36.88 3.18
5270 5438 9.162764 GGAGTAGTTATTCACTTATTTGCTTCA 57.837 33.333 0.00 0.00 36.88 3.02
5271 5439 8.613482 GGGAGTAGTTATTCACTTATTTGCTTC 58.387 37.037 0.00 0.00 36.88 3.86
5272 5440 7.556635 GGGGAGTAGTTATTCACTTATTTGCTT 59.443 37.037 0.00 0.00 36.88 3.91
5273 5441 7.054751 GGGGAGTAGTTATTCACTTATTTGCT 58.945 38.462 0.00 0.00 36.88 3.91
5274 5442 6.262496 GGGGGAGTAGTTATTCACTTATTTGC 59.738 42.308 0.00 0.00 36.88 3.68
5275 5443 7.574607 AGGGGGAGTAGTTATTCACTTATTTG 58.425 38.462 0.00 0.00 36.88 2.32
5276 5444 7.404980 TGAGGGGGAGTAGTTATTCACTTATTT 59.595 37.037 0.00 0.00 36.88 1.40
5277 5445 6.906901 TGAGGGGGAGTAGTTATTCACTTATT 59.093 38.462 0.00 0.00 36.88 1.40
5278 5446 6.449956 TGAGGGGGAGTAGTTATTCACTTAT 58.550 40.000 0.00 0.00 36.88 1.73
5279 5447 5.845734 TGAGGGGGAGTAGTTATTCACTTA 58.154 41.667 0.00 0.00 36.88 2.24
5280 5448 4.695606 TGAGGGGGAGTAGTTATTCACTT 58.304 43.478 0.00 0.00 36.88 3.16
5281 5449 4.348020 TGAGGGGGAGTAGTTATTCACT 57.652 45.455 0.00 0.00 39.87 3.41
5282 5450 5.431179 TTTGAGGGGGAGTAGTTATTCAC 57.569 43.478 0.00 0.00 0.00 3.18
5283 5451 5.788533 TCTTTTGAGGGGGAGTAGTTATTCA 59.211 40.000 0.00 0.00 0.00 2.57
5284 5452 6.309389 TCTTTTGAGGGGGAGTAGTTATTC 57.691 41.667 0.00 0.00 0.00 1.75
5285 5453 6.713731 TTCTTTTGAGGGGGAGTAGTTATT 57.286 37.500 0.00 0.00 0.00 1.40
5286 5454 6.713731 TTTCTTTTGAGGGGGAGTAGTTAT 57.286 37.500 0.00 0.00 0.00 1.89
5287 5455 6.518516 TTTTCTTTTGAGGGGGAGTAGTTA 57.481 37.500 0.00 0.00 0.00 2.24
5288 5456 5.397553 TTTTCTTTTGAGGGGGAGTAGTT 57.602 39.130 0.00 0.00 0.00 2.24
5289 5457 5.397553 TTTTTCTTTTGAGGGGGAGTAGT 57.602 39.130 0.00 0.00 0.00 2.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.