Multiple sequence alignment - TraesCS7A01G502500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G502500 chr7A 100.000 3308 0 0 1 3308 691523592 691520285 0.000000e+00 6109.0
1 TraesCS7A01G502500 chr7A 89.843 1526 126 9 907 2405 691675678 691677201 0.000000e+00 1932.0
2 TraesCS7A01G502500 chr7A 97.063 749 21 1 2560 3308 514701916 514701169 0.000000e+00 1260.0
3 TraesCS7A01G502500 chr7A 79.442 1576 254 48 804 2339 691448446 691446901 0.000000e+00 1051.0
4 TraesCS7A01G502500 chr7A 91.473 387 21 3 314 697 691674633 691675010 3.780000e-144 521.0
5 TraesCS7A01G502500 chr7A 88.319 351 36 4 2959 3307 285687855 285688202 1.840000e-112 416.0
6 TraesCS7A01G502500 chr7A 81.739 230 39 2 995 1221 691474063 691473834 4.360000e-44 189.0
7 TraesCS7A01G502500 chr7A 77.567 263 37 15 392 636 691448630 691448372 4.450000e-29 139.0
8 TraesCS7A01G502500 chr7D 94.375 2560 107 20 1 2555 599399922 599397395 0.000000e+00 3895.0
9 TraesCS7A01G502500 chr7D 79.772 1577 247 45 804 2339 599193622 599192077 0.000000e+00 1079.0
10 TraesCS7A01G502500 chr7D 79.200 875 152 22 1556 2410 599255180 599254316 6.150000e-162 580.0
11 TraesCS7A01G502500 chr7D 80.364 550 90 15 995 1535 599269169 599268629 5.140000e-108 401.0
12 TraesCS7A01G502500 chr7D 86.744 347 41 4 2962 3306 263000493 263000836 6.700000e-102 381.0
13 TraesCS7A01G502500 chr7D 89.655 290 17 7 14 302 240638441 240638164 1.130000e-94 357.0
14 TraesCS7A01G502500 chr7D 81.150 313 30 18 508 803 599399497 599399197 1.190000e-54 224.0
15 TraesCS7A01G502500 chr7D 78.327 263 35 14 392 636 599193806 599193548 2.060000e-32 150.0
16 TraesCS7A01G502500 chr7B 92.857 1960 125 7 458 2415 678737123 678735177 0.000000e+00 2830.0
17 TraesCS7A01G502500 chr7B 91.124 1611 140 2 804 2413 678850757 678852365 0.000000e+00 2180.0
18 TraesCS7A01G502500 chr7B 79.904 1463 235 37 995 2415 678664033 678662588 0.000000e+00 1018.0
19 TraesCS7A01G502500 chr7B 90.693 548 30 4 97 643 678849529 678850056 0.000000e+00 710.0
20 TraesCS7A01G502500 chr7B 86.019 422 20 17 1 422 678737918 678737536 1.840000e-112 416.0
21 TraesCS7A01G502500 chr7B 78.241 648 105 26 804 1437 678648207 678647582 1.860000e-102 383.0
22 TraesCS7A01G502500 chr7B 84.375 320 34 12 440 746 678737073 678736757 1.930000e-77 300.0
23 TraesCS7A01G502500 chr7B 86.740 181 19 3 541 716 678850657 678850837 2.600000e-46 196.0
24 TraesCS7A01G502500 chr7B 87.681 138 14 2 617 751 678850657 678850794 1.230000e-34 158.0
25 TraesCS7A01G502500 chr7B 77.186 263 39 13 392 636 678648391 678648132 2.070000e-27 134.0
26 TraesCS7A01G502500 chr7B 97.619 42 1 0 420 461 678737375 678737334 4.580000e-09 73.1
27 TraesCS7A01G502500 chr2A 98.658 745 9 1 2564 3308 445581426 445580683 0.000000e+00 1319.0
28 TraesCS7A01G502500 chr5D 86.412 758 62 22 2564 3308 482655286 482656015 0.000000e+00 791.0
29 TraesCS7A01G502500 chr4B 81.109 667 110 5 1677 2339 12840927 12841581 1.360000e-143 520.0
30 TraesCS7A01G502500 chr4B 88.660 291 20 7 12 301 70104681 70104403 3.160000e-90 342.0
31 TraesCS7A01G502500 chr4B 87.589 282 32 2 10 290 647035807 647036086 1.140000e-84 324.0
32 TraesCS7A01G502500 chr4B 75.769 260 46 11 389 633 12828180 12828437 7.500000e-22 115.0
33 TraesCS7A01G502500 chr2B 89.041 292 19 3 9 299 351763829 351764108 1.890000e-92 350.0
34 TraesCS7A01G502500 chr2B 88.660 291 20 7 12 301 737765028 737765306 3.160000e-90 342.0
35 TraesCS7A01G502500 chr2D 89.003 291 19 7 12 301 384147439 384147161 6.790000e-92 348.0
36 TraesCS7A01G502500 chr6B 89.199 287 17 6 14 299 22545164 22545437 2.440000e-91 346.0
37 TraesCS7A01G502500 chr6B 85.000 180 12 4 14 191 240276471 240276637 5.680000e-38 169.0
38 TraesCS7A01G502500 chr5B 89.003 291 17 4 12 300 165930515 165930238 2.440000e-91 346.0
39 TraesCS7A01G502500 chr5B 88.660 291 18 4 12 300 165525899 165525622 1.140000e-89 340.0
40 TraesCS7A01G502500 chr1B 88.660 291 20 7 12 301 612400215 612400493 3.160000e-90 342.0
41 TraesCS7A01G502500 chr3B 87.241 290 15 11 14 298 134005401 134005129 8.910000e-81 311.0
42 TraesCS7A01G502500 chr3B 86.047 86 10 2 2564 2647 260354035 260353950 1.260000e-14 91.6
43 TraesCS7A01G502500 chr3D 89.105 257 15 6 9 264 169355177 169355421 1.150000e-79 307.0
44 TraesCS7A01G502500 chr6A 97.101 138 4 0 2418 2555 447807196 447807059 1.980000e-57 233.0
45 TraesCS7A01G502500 chr6A 94.558 147 6 2 2410 2555 572760853 572760998 3.320000e-55 226.0
46 TraesCS7A01G502500 chr6A 94.558 147 7 1 2410 2555 572768094 572768240 3.320000e-55 226.0
47 TraesCS7A01G502500 chr6A 95.035 141 7 0 2415 2555 447799833 447799693 4.300000e-54 222.0
48 TraesCS7A01G502500 chr6A 94.326 141 8 0 2415 2555 447804741 447804601 2.000000e-52 217.0
49 TraesCS7A01G502500 chr6A 93.197 147 9 1 2410 2555 572774825 572774971 7.190000e-52 215.0
50 TraesCS7A01G502500 chr6A 90.780 141 5 1 2415 2555 447802273 447802141 7.290000e-42 182.0
51 TraesCS7A01G502500 chr5A 89.474 133 14 0 3176 3308 705997886 705997754 5.680000e-38 169.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G502500 chr7A 691520285 691523592 3307 True 6109.000 6109 100.0000 1 3308 1 chr7A.!!$R3 3307
1 TraesCS7A01G502500 chr7A 514701169 514701916 747 True 1260.000 1260 97.0630 2560 3308 1 chr7A.!!$R1 748
2 TraesCS7A01G502500 chr7A 691674633 691677201 2568 False 1226.500 1932 90.6580 314 2405 2 chr7A.!!$F2 2091
3 TraesCS7A01G502500 chr7A 691446901 691448630 1729 True 595.000 1051 78.5045 392 2339 2 chr7A.!!$R4 1947
4 TraesCS7A01G502500 chr7D 599397395 599399922 2527 True 2059.500 3895 87.7625 1 2555 2 chr7D.!!$R5 2554
5 TraesCS7A01G502500 chr7D 599192077 599193806 1729 True 614.500 1079 79.0495 392 2339 2 chr7D.!!$R4 1947
6 TraesCS7A01G502500 chr7D 599254316 599255180 864 True 580.000 580 79.2000 1556 2410 1 chr7D.!!$R2 854
7 TraesCS7A01G502500 chr7D 599268629 599269169 540 True 401.000 401 80.3640 995 1535 1 chr7D.!!$R3 540
8 TraesCS7A01G502500 chr7B 678662588 678664033 1445 True 1018.000 1018 79.9040 995 2415 1 chr7B.!!$R1 1420
9 TraesCS7A01G502500 chr7B 678735177 678737918 2741 True 904.775 2830 90.2175 1 2415 4 chr7B.!!$R3 2414
10 TraesCS7A01G502500 chr7B 678849529 678852365 2836 False 811.000 2180 89.0595 97 2413 4 chr7B.!!$F1 2316
11 TraesCS7A01G502500 chr7B 678647582 678648391 809 True 258.500 383 77.7135 392 1437 2 chr7B.!!$R2 1045
12 TraesCS7A01G502500 chr2A 445580683 445581426 743 True 1319.000 1319 98.6580 2564 3308 1 chr2A.!!$R1 744
13 TraesCS7A01G502500 chr5D 482655286 482656015 729 False 791.000 791 86.4120 2564 3308 1 chr5D.!!$F1 744
14 TraesCS7A01G502500 chr4B 12840927 12841581 654 False 520.000 520 81.1090 1677 2339 1 chr4B.!!$F2 662
15 TraesCS7A01G502500 chr6A 447799693 447807196 7503 True 213.500 233 94.3105 2415 2555 4 chr6A.!!$R1 140

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
718 1770 0.548510 GCAGCCAAACCCTCCTCTAT 59.451 55.000 0.0 0.0 0.0 1.98 F
1088 2437 1.003355 CTGTTGACGATGCCCCACT 60.003 57.895 0.0 0.0 0.0 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1578 2940 0.179032 TGAAACCCGTGCTGATGTGT 60.179 50.0 0.00 0.00 0.00 3.72 R
2734 7685 0.608582 ACTTACGCGAGACTGAGGGT 60.609 55.0 15.93 3.37 37.33 4.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
226 229 6.441088 AAACACCTCTCTCCTCATTAACTT 57.559 37.500 0.00 0.00 0.00 2.66
234 237 5.131642 TCTCTCCTCATTAACTTCATGCCAT 59.868 40.000 0.00 0.00 0.00 4.40
241 244 7.175467 CCTCATTAACTTCATGCCATATAAGCA 59.825 37.037 3.54 3.54 45.94 3.91
254 257 7.056006 TGCCATATAAGCATATATGTCTTGGG 58.944 38.462 21.45 18.92 45.25 4.12
255 258 6.488006 GCCATATAAGCATATATGTCTTGGGG 59.512 42.308 21.45 18.71 45.25 4.96
257 260 7.500227 CCATATAAGCATATATGTCTTGGGGTG 59.500 40.741 21.45 16.81 45.25 4.61
258 261 3.146104 AGCATATATGTCTTGGGGTGC 57.854 47.619 14.14 0.00 0.00 5.01
259 262 1.806542 GCATATATGTCTTGGGGTGCG 59.193 52.381 14.14 0.00 0.00 5.34
260 263 2.810400 GCATATATGTCTTGGGGTGCGT 60.810 50.000 14.14 0.00 0.00 5.24
262 265 4.637276 CATATATGTCTTGGGGTGCGTTA 58.363 43.478 4.43 0.00 0.00 3.18
263 266 3.857157 ATATGTCTTGGGGTGCGTTAT 57.143 42.857 0.00 0.00 0.00 1.89
264 267 4.967084 ATATGTCTTGGGGTGCGTTATA 57.033 40.909 0.00 0.00 0.00 0.98
265 268 3.857157 ATGTCTTGGGGTGCGTTATAT 57.143 42.857 0.00 0.00 0.00 0.86
266 269 3.637911 TGTCTTGGGGTGCGTTATATT 57.362 42.857 0.00 0.00 0.00 1.28
649 1068 3.576550 GCCAAACCCTTTCTACATGGAAA 59.423 43.478 0.00 0.00 34.55 3.13
657 1352 3.904800 TTCTACATGGAAATGCGAGGA 57.095 42.857 0.00 0.00 0.00 3.71
700 1752 9.822185 AGAGGATTTTTGGTTCATAATAAATGC 57.178 29.630 0.00 0.00 0.00 3.56
718 1770 0.548510 GCAGCCAAACCCTCCTCTAT 59.451 55.000 0.00 0.00 0.00 1.98
751 1803 3.181476 GCAAGGGATACGCAAATTCCAAT 60.181 43.478 0.00 0.00 37.60 3.16
793 1860 5.878406 AACCTCCTCTACATGGAAGTATG 57.122 43.478 0.00 0.00 32.61 2.39
794 1861 3.643792 ACCTCCTCTACATGGAAGTATGC 59.356 47.826 0.00 0.00 32.61 3.14
796 1863 4.101585 CCTCCTCTACATGGAAGTATGCAA 59.898 45.833 0.00 0.00 32.61 4.08
797 1864 5.282055 TCCTCTACATGGAAGTATGCAAG 57.718 43.478 0.00 0.00 0.00 4.01
799 1866 4.384056 CTCTACATGGAAGTATGCAAGGG 58.616 47.826 0.00 0.00 0.00 3.95
801 1868 3.959495 ACATGGAAGTATGCAAGGGAT 57.041 42.857 0.00 0.00 0.00 3.85
804 1871 4.413520 ACATGGAAGTATGCAAGGGATACT 59.586 41.667 4.79 4.79 38.10 2.12
806 1873 4.298626 TGGAAGTATGCAAGGGATACTCT 58.701 43.478 10.23 2.75 35.91 3.24
807 1874 5.464069 TGGAAGTATGCAAGGGATACTCTA 58.536 41.667 10.23 1.74 35.91 2.43
808 1875 5.304614 TGGAAGTATGCAAGGGATACTCTAC 59.695 44.000 10.23 5.56 35.91 2.59
809 1876 5.304614 GGAAGTATGCAAGGGATACTCTACA 59.695 44.000 10.23 0.00 35.91 2.74
810 1877 6.014156 GGAAGTATGCAAGGGATACTCTACAT 60.014 42.308 10.23 0.00 35.91 2.29
811 1878 6.352016 AGTATGCAAGGGATACTCTACATG 57.648 41.667 4.79 0.00 32.19 3.21
812 1879 4.630644 ATGCAAGGGATACTCTACATGG 57.369 45.455 0.00 0.00 0.00 3.66
813 1880 3.653164 TGCAAGGGATACTCTACATGGA 58.347 45.455 0.00 0.00 0.00 3.41
815 1882 4.101585 TGCAAGGGATACTCTACATGGAAG 59.898 45.833 0.00 0.00 0.00 3.46
816 1883 4.101741 GCAAGGGATACTCTACATGGAAGT 59.898 45.833 0.00 0.00 0.00 3.01
817 1884 5.304614 GCAAGGGATACTCTACATGGAAGTA 59.695 44.000 0.00 2.16 0.00 2.24
967 2309 6.300703 ACCAACACAAGTTAATTAGCCAGTA 58.699 36.000 0.00 0.00 35.85 2.74
1037 2380 1.206849 CACTCTTCTCCTTCCTCTGGC 59.793 57.143 0.00 0.00 0.00 4.85
1084 2433 2.690778 GCCACTGTTGACGATGCCC 61.691 63.158 0.00 0.00 0.00 5.36
1088 2437 1.003355 CTGTTGACGATGCCCCACT 60.003 57.895 0.00 0.00 0.00 4.00
1128 2477 3.136123 CTGCGCATGGTTCCCAGG 61.136 66.667 12.24 0.00 36.75 4.45
1480 2830 3.702048 ACGTCACCCCCATCCACG 61.702 66.667 0.00 0.00 36.54 4.94
1538 2888 2.449730 AGACCCTATCCTTCACGGGATA 59.550 50.000 0.00 0.00 43.56 2.59
1546 2908 2.693250 CTTCACGGGATATGCGCCGA 62.693 60.000 4.18 0.00 35.27 5.54
1578 2940 2.752939 CGTCATCATTGGCTGCGCA 61.753 57.895 10.98 10.98 0.00 6.09
2022 3390 2.436824 GGCAGGAGGCTCGGTTTC 60.437 66.667 8.69 0.00 44.01 2.78
2206 3586 0.758734 GGACATCACCATCATCGGGA 59.241 55.000 0.00 0.00 0.00 5.14
2495 7445 2.749466 GCCTCCCGATCAAAATCCATCA 60.749 50.000 0.00 0.00 0.00 3.07
2502 7452 4.818005 CCGATCAAAATCCATCATCTCACA 59.182 41.667 0.00 0.00 0.00 3.58
2555 7505 4.723248 CCCGCTTTCTGACTTAACAAATC 58.277 43.478 0.00 0.00 0.00 2.17
2556 7506 4.379499 CCCGCTTTCTGACTTAACAAATCC 60.379 45.833 0.00 0.00 0.00 3.01
2557 7507 4.379499 CCGCTTTCTGACTTAACAAATCCC 60.379 45.833 0.00 0.00 0.00 3.85
2558 7508 4.215399 CGCTTTCTGACTTAACAAATCCCA 59.785 41.667 0.00 0.00 0.00 4.37
2562 7512 7.329471 GCTTTCTGACTTAACAAATCCCATTTC 59.671 37.037 0.00 0.00 0.00 2.17
2635 7585 4.124351 GTCCGTCCGATCCACGCA 62.124 66.667 6.37 0.00 41.07 5.24
2734 7685 1.526455 CGGGTTCACGGGTTTTCCA 60.526 57.895 0.00 0.00 42.91 3.53
3191 8151 1.671054 ATGTCGCAGGGGTTGTTCG 60.671 57.895 0.00 0.00 0.00 3.95
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
91 94 8.421784 ACACTTATGTTACTACCCACTATGATG 58.578 37.037 0.00 0.00 34.46 3.07
202 205 7.234782 TGAAGTTAATGAGGAGAGAGGTGTTTA 59.765 37.037 0.00 0.00 0.00 2.01
234 237 6.414732 GCACCCCAAGACATATATGCTTATA 58.585 40.000 12.79 2.11 0.00 0.98
241 244 3.857157 AACGCACCCCAAGACATATAT 57.143 42.857 0.00 0.00 0.00 0.86
243 246 3.857157 ATAACGCACCCCAAGACATAT 57.143 42.857 0.00 0.00 0.00 1.78
245 248 3.857157 ATATAACGCACCCCAAGACAT 57.143 42.857 0.00 0.00 0.00 3.06
246 249 3.637911 AATATAACGCACCCCAAGACA 57.362 42.857 0.00 0.00 0.00 3.41
248 251 6.043474 AGGTTATAATATAACGCACCCCAAGA 59.957 38.462 14.74 0.00 0.00 3.02
249 252 6.235664 AGGTTATAATATAACGCACCCCAAG 58.764 40.000 14.74 0.00 0.00 3.61
250 253 6.190346 AGGTTATAATATAACGCACCCCAA 57.810 37.500 14.74 0.00 0.00 4.12
251 254 5.829062 AGGTTATAATATAACGCACCCCA 57.171 39.130 14.74 0.00 0.00 4.96
252 255 7.389232 ACTTAGGTTATAATATAACGCACCCC 58.611 38.462 14.74 2.94 0.00 4.95
253 256 8.837788 AACTTAGGTTATAATATAACGCACCC 57.162 34.615 14.74 3.54 33.39 4.61
265 268 9.151177 CCATAGTGGGAGTAACTTAGGTTATAA 57.849 37.037 0.30 0.00 35.78 0.98
266 269 7.234166 GCCATAGTGGGAGTAACTTAGGTTATA 59.766 40.741 0.30 0.00 37.83 0.98
545 963 0.458669 GATGAGGGTTTGGCTGCATG 59.541 55.000 0.50 0.00 0.00 4.06
657 1352 7.391148 AATCCTCTGTTGTTATTTGCGTATT 57.609 32.000 0.00 0.00 0.00 1.89
700 1752 3.244700 CCATATAGAGGAGGGTTTGGCTG 60.245 52.174 0.00 0.00 0.00 4.85
718 1770 3.431626 CGTATCCCTTGCACACTTCCATA 60.432 47.826 0.00 0.00 0.00 2.74
751 1803 8.802267 GGAGGTTTTGGCTGCATTTATTATATA 58.198 33.333 0.50 0.00 0.00 0.86
793 1860 4.101741 ACTTCCATGTAGAGTATCCCTTGC 59.898 45.833 0.00 0.00 33.66 4.01
794 1861 5.878406 ACTTCCATGTAGAGTATCCCTTG 57.122 43.478 0.00 0.00 33.66 3.61
796 1863 5.071370 CGTACTTCCATGTAGAGTATCCCT 58.929 45.833 0.00 0.00 33.66 4.20
797 1864 4.321082 GCGTACTTCCATGTAGAGTATCCC 60.321 50.000 0.00 0.00 33.66 3.85
799 1866 5.434352 TGCGTACTTCCATGTAGAGTATC 57.566 43.478 0.00 0.00 0.00 2.24
801 1868 4.097437 CCTTGCGTACTTCCATGTAGAGTA 59.903 45.833 0.00 0.00 0.00 2.59
804 1871 2.167693 CCCTTGCGTACTTCCATGTAGA 59.832 50.000 0.00 0.00 0.00 2.59
806 1873 2.181125 TCCCTTGCGTACTTCCATGTA 58.819 47.619 0.00 0.00 0.00 2.29
807 1874 0.981183 TCCCTTGCGTACTTCCATGT 59.019 50.000 0.00 0.00 0.00 3.21
808 1875 2.332063 ATCCCTTGCGTACTTCCATG 57.668 50.000 0.00 0.00 0.00 3.66
809 1876 2.223971 CGTATCCCTTGCGTACTTCCAT 60.224 50.000 0.00 0.00 0.00 3.41
810 1877 1.135527 CGTATCCCTTGCGTACTTCCA 59.864 52.381 0.00 0.00 0.00 3.53
811 1878 1.849097 CGTATCCCTTGCGTACTTCC 58.151 55.000 0.00 0.00 0.00 3.46
812 1879 1.206523 GCGTATCCCTTGCGTACTTC 58.793 55.000 0.00 0.00 35.67 3.01
813 1880 0.533491 TGCGTATCCCTTGCGTACTT 59.467 50.000 0.00 0.00 35.67 2.24
815 1882 1.361793 TTTGCGTATCCCTTGCGTAC 58.638 50.000 0.00 0.00 35.67 3.67
816 1883 2.159014 AGATTTGCGTATCCCTTGCGTA 60.159 45.455 0.00 0.00 35.67 4.42
817 1884 1.014352 GATTTGCGTATCCCTTGCGT 58.986 50.000 0.00 0.00 35.67 5.24
1047 2390 3.330720 GTGGTGGGGTGGAGGAGG 61.331 72.222 0.00 0.00 0.00 4.30
1084 2433 1.153823 CGTCGTTGAGGCCTAGTGG 60.154 63.158 4.42 0.00 0.00 4.00
1128 2477 1.377333 GGTACTGTTCCAGCCAGGC 60.377 63.158 1.84 1.84 37.29 4.85
1287 2636 0.467474 TCTCCATCGCGAGGGTGTAT 60.467 55.000 35.74 4.80 33.26 2.29
1449 2799 1.522806 GACGTGGAACCTGCACACA 60.523 57.895 0.00 0.00 38.73 3.72
1480 2830 1.966493 CTCGCATGTACGCCACCAAC 61.966 60.000 0.00 0.00 0.00 3.77
1538 2888 2.813908 GAAAGACCGTCGGCGCAT 60.814 61.111 12.28 0.00 36.67 4.73
1578 2940 0.179032 TGAAACCCGTGCTGATGTGT 60.179 50.000 0.00 0.00 0.00 3.72
1945 3307 1.751437 TCGATCATCACACTCCGAGT 58.249 50.000 0.00 0.00 0.00 4.18
2206 3586 1.833492 TGCCCACTTGCTGCATTGT 60.833 52.632 1.84 2.85 0.00 2.71
2387 3794 2.823196 TGTTTGTTTGTGCACTCTCG 57.177 45.000 19.41 0.00 0.00 4.04
2495 7445 1.003928 TCACTTGGCTGCATGTGAGAT 59.996 47.619 14.38 0.00 35.31 2.75
2502 7452 2.809696 GCAAATTTTCACTTGGCTGCAT 59.190 40.909 0.50 0.00 0.00 3.96
2555 7505 9.423061 CTGAAAAATAGTAAAACTGGAAATGGG 57.577 33.333 0.00 0.00 0.00 4.00
2556 7506 9.981114 ACTGAAAAATAGTAAAACTGGAAATGG 57.019 29.630 0.00 0.00 0.00 3.16
2562 7512 9.831737 CAGATGACTGAAAAATAGTAAAACTGG 57.168 33.333 0.00 0.00 46.03 4.00
2635 7585 1.870901 GTACGACGCGCGGAGATTT 60.871 57.895 35.22 12.16 46.49 2.17
2734 7685 0.608582 ACTTACGCGAGACTGAGGGT 60.609 55.000 15.93 3.37 37.33 4.34
2999 7952 2.658422 CATGGGTGCTTGTTGGCC 59.342 61.111 0.00 0.00 0.00 5.36
3191 8151 4.595986 TCCTACCCAAAAACCAGCTAATC 58.404 43.478 0.00 0.00 0.00 1.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.