Multiple sequence alignment - TraesCS7A01G502300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G502300 chr7A 100.000 6188 0 0 1 6188 691469502 691463315 0.000000e+00 11428
1 TraesCS7A01G502300 chr7A 76.815 2713 463 94 1743 4377 697976501 697979125 0.000000e+00 1373
2 TraesCS7A01G502300 chr7A 77.173 2519 418 89 1924 4369 697824454 697826888 0.000000e+00 1321
3 TraesCS7A01G502300 chr7A 76.787 1469 283 45 3123 4563 698764712 698766150 0.000000e+00 771
4 TraesCS7A01G502300 chr7A 76.651 1469 285 45 3123 4563 698851739 698853177 0.000000e+00 760
5 TraesCS7A01G502300 chr7A 76.547 1471 284 48 3123 4563 699021690 699023129 0.000000e+00 749
6 TraesCS7A01G502300 chr7A 80.340 824 119 21 930 1722 697823565 697824376 8.940000e-163 584
7 TraesCS7A01G502300 chr7D 95.718 4601 153 12 1 4585 599247231 599242659 0.000000e+00 7365
8 TraesCS7A01G502300 chr7D 88.181 1413 151 5 4784 6188 598516822 598518226 0.000000e+00 1670
9 TraesCS7A01G502300 chr7D 92.548 1087 70 5 5110 6188 599242664 599241581 0.000000e+00 1548
10 TraesCS7A01G502300 chr7D 77.475 2717 464 87 1743 4377 606107602 606110252 0.000000e+00 1491
11 TraesCS7A01G502300 chr7D 77.226 2718 458 94 1744 4377 606011501 606014141 0.000000e+00 1441
12 TraesCS7A01G502300 chr7D 92.680 888 61 4 3903 4788 598514401 598515286 0.000000e+00 1277
13 TraesCS7A01G502300 chr4B 92.823 4138 256 13 2075 6188 12754840 12758960 0.000000e+00 5958
14 TraesCS7A01G502300 chr4B 86.037 2127 159 50 1 2082 12752547 12754580 0.000000e+00 2156
15 TraesCS7A01G502300 chr4B 89.855 1035 81 9 2270 3283 12748167 12749198 0.000000e+00 1308
16 TraesCS7A01G502300 chr4B 89.599 673 69 1 4304 4976 12750139 12750810 0.000000e+00 854
17 TraesCS7A01G502300 chr7B 88.574 4481 441 32 1743 6188 677962036 677966480 0.000000e+00 5373
18 TraesCS7A01G502300 chr7B 90.107 3265 293 14 2196 5434 677882786 677879526 0.000000e+00 4213
19 TraesCS7A01G502300 chr7B 77.138 2690 449 104 1743 4347 690095013 690097621 0.000000e+00 1408
20 TraesCS7A01G502300 chr7B 81.571 1731 285 21 4190 5899 678509199 678510916 0.000000e+00 1399
21 TraesCS7A01G502300 chr7B 96.663 839 27 1 1 839 678661177 678660340 0.000000e+00 1393
22 TraesCS7A01G502300 chr7B 77.997 2336 383 80 2076 4347 690031465 690033733 0.000000e+00 1345
23 TraesCS7A01G502300 chr7B 85.812 1318 106 35 466 1742 677960857 677962134 0.000000e+00 1323
24 TraesCS7A01G502300 chr7B 86.685 1119 91 23 647 1742 677883869 677882786 0.000000e+00 1188
25 TraesCS7A01G502300 chr7B 88.346 798 66 11 2364 3141 677850728 677849938 0.000000e+00 933
26 TraesCS7A01G502300 chr7B 89.405 689 68 5 3133 3820 678508436 678509120 0.000000e+00 863
27 TraesCS7A01G502300 chr7B 90.030 662 65 1 4212 4872 677977277 677977938 0.000000e+00 856
28 TraesCS7A01G502300 chr7B 87.027 555 71 1 4868 5422 678001160 678001713 5.270000e-175 625
29 TraesCS7A01G502300 chr7B 81.373 816 104 28 936 1722 690915707 690916503 6.810000e-174 621
30 TraesCS7A01G502300 chr7B 79.647 850 125 26 933 1746 690094284 690095121 9.000000e-158 568
31 TraesCS7A01G502300 chr7B 87.284 464 59 0 5725 6188 677872725 677872262 1.180000e-146 531
32 TraesCS7A01G502300 chr7B 85.263 475 55 7 5463 5929 678001711 678002178 5.610000e-130 475
33 TraesCS7A01G502300 chr7B 83.026 271 30 11 431 693 690915217 690915479 1.340000e-56 231
34 TraesCS7A01G502300 chr7B 91.129 124 11 0 563 686 677883994 677883871 1.070000e-37 169
35 TraesCS7A01G502300 chr7B 91.489 94 8 0 4063 4156 678509109 678509202 5.030000e-26 130
36 TraesCS7A01G502300 chrUn 76.626 1476 278 47 3123 4566 92706443 92705003 0.000000e+00 752
37 TraesCS7A01G502300 chrUn 85.014 734 95 7 5463 6188 87277379 87278105 0.000000e+00 732
38 TraesCS7A01G502300 chrUn 85.493 710 88 7 5463 6164 343859342 343860044 0.000000e+00 726
39 TraesCS7A01G502300 chrUn 87.027 555 71 1 4868 5422 87276828 87277381 5.270000e-175 625
40 TraesCS7A01G502300 chrUn 87.027 555 71 1 4868 5422 343858791 343859344 5.270000e-175 625
41 TraesCS7A01G502300 chrUn 81.716 268 33 12 533 792 33118093 33118352 6.290000e-50 209
42 TraesCS7A01G502300 chrUn 73.879 513 115 13 3994 4495 93195513 93196017 2.950000e-43 187
43 TraesCS7A01G502300 chr3B 81.121 821 116 19 936 1729 760055887 760055079 6.810000e-174 621
44 TraesCS7A01G502300 chr3A 81.068 824 117 24 936 1729 704841554 704840740 6.810000e-174 621
45 TraesCS7A01G502300 chr3A 80.872 826 114 21 936 1729 704781610 704780797 1.470000e-170 610
46 TraesCS7A01G502300 chr3A 80.751 826 116 21 936 1729 704695733 704694919 6.860000e-169 604
47 TraesCS7A01G502300 chr5D 97.674 43 1 0 666 708 511131750 511131792 2.390000e-09 75


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G502300 chr7A 691463315 691469502 6187 True 11428.000000 11428 100.000000 1 6188 1 chr7A.!!$R1 6187
1 TraesCS7A01G502300 chr7A 697976501 697979125 2624 False 1373.000000 1373 76.815000 1743 4377 1 chr7A.!!$F1 2634
2 TraesCS7A01G502300 chr7A 697823565 697826888 3323 False 952.500000 1321 78.756500 930 4369 2 chr7A.!!$F5 3439
3 TraesCS7A01G502300 chr7A 698764712 698766150 1438 False 771.000000 771 76.787000 3123 4563 1 chr7A.!!$F2 1440
4 TraesCS7A01G502300 chr7A 698851739 698853177 1438 False 760.000000 760 76.651000 3123 4563 1 chr7A.!!$F3 1440
5 TraesCS7A01G502300 chr7A 699021690 699023129 1439 False 749.000000 749 76.547000 3123 4563 1 chr7A.!!$F4 1440
6 TraesCS7A01G502300 chr7D 599241581 599247231 5650 True 4456.500000 7365 94.133000 1 6188 2 chr7D.!!$R1 6187
7 TraesCS7A01G502300 chr7D 606107602 606110252 2650 False 1491.000000 1491 77.475000 1743 4377 1 chr7D.!!$F2 2634
8 TraesCS7A01G502300 chr7D 598514401 598518226 3825 False 1473.500000 1670 90.430500 3903 6188 2 chr7D.!!$F3 2285
9 TraesCS7A01G502300 chr7D 606011501 606014141 2640 False 1441.000000 1441 77.226000 1744 4377 1 chr7D.!!$F1 2633
10 TraesCS7A01G502300 chr4B 12748167 12758960 10793 False 2569.000000 5958 89.578500 1 6188 4 chr4B.!!$F1 6187
11 TraesCS7A01G502300 chr7B 677960857 677966480 5623 False 3348.000000 5373 87.193000 466 6188 2 chr7B.!!$F3 5722
12 TraesCS7A01G502300 chr7B 677879526 677883994 4468 True 1856.666667 4213 89.307000 563 5434 3 chr7B.!!$R4 4871
13 TraesCS7A01G502300 chr7B 678660340 678661177 837 True 1393.000000 1393 96.663000 1 839 1 chr7B.!!$R3 838
14 TraesCS7A01G502300 chr7B 690031465 690033733 2268 False 1345.000000 1345 77.997000 2076 4347 1 chr7B.!!$F2 2271
15 TraesCS7A01G502300 chr7B 690094284 690097621 3337 False 988.000000 1408 78.392500 933 4347 2 chr7B.!!$F6 3414
16 TraesCS7A01G502300 chr7B 677849938 677850728 790 True 933.000000 933 88.346000 2364 3141 1 chr7B.!!$R1 777
17 TraesCS7A01G502300 chr7B 677977277 677977938 661 False 856.000000 856 90.030000 4212 4872 1 chr7B.!!$F1 660
18 TraesCS7A01G502300 chr7B 678508436 678510916 2480 False 797.333333 1399 87.488333 3133 5899 3 chr7B.!!$F5 2766
19 TraesCS7A01G502300 chr7B 678001160 678002178 1018 False 550.000000 625 86.145000 4868 5929 2 chr7B.!!$F4 1061
20 TraesCS7A01G502300 chr7B 690915217 690916503 1286 False 426.000000 621 82.199500 431 1722 2 chr7B.!!$F7 1291
21 TraesCS7A01G502300 chrUn 92705003 92706443 1440 True 752.000000 752 76.626000 3123 4566 1 chrUn.!!$R1 1443
22 TraesCS7A01G502300 chrUn 87276828 87278105 1277 False 678.500000 732 86.020500 4868 6188 2 chrUn.!!$F3 1320
23 TraesCS7A01G502300 chrUn 343858791 343860044 1253 False 675.500000 726 86.260000 4868 6164 2 chrUn.!!$F4 1296
24 TraesCS7A01G502300 chr3B 760055079 760055887 808 True 621.000000 621 81.121000 936 1729 1 chr3B.!!$R1 793
25 TraesCS7A01G502300 chr3A 704840740 704841554 814 True 621.000000 621 81.068000 936 1729 1 chr3A.!!$R3 793
26 TraesCS7A01G502300 chr3A 704780797 704781610 813 True 610.000000 610 80.872000 936 1729 1 chr3A.!!$R2 793
27 TraesCS7A01G502300 chr3A 704694919 704695733 814 True 604.000000 604 80.751000 936 1729 1 chr3A.!!$R1 793

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
433 4815 1.519455 GGCACTCTCAATCCGTCCG 60.519 63.158 0.0 0.0 0.00 4.79 F
1652 6251 0.036732 TATGCCAGCGGAATCCCATC 59.963 55.000 0.0 0.0 0.00 3.51 F
1720 6319 0.034896 GGTGGACCGACACATGAGTT 59.965 55.000 0.0 0.0 43.08 3.01 F
1721 6320 1.274167 GGTGGACCGACACATGAGTTA 59.726 52.381 0.0 0.0 43.08 2.24 F
1959 6770 1.479323 GGACGTGGATAGGTTAGCACA 59.521 52.381 0.0 0.0 0.00 4.57 F
3535 8691 2.863809 AGGGTGAAATGGACAACTGAC 58.136 47.619 0.0 0.0 0.00 3.51 F
4782 9969 1.003580 ACATCTCATGTCCCACCACAC 59.996 52.381 0.0 0.0 39.92 3.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1701 6300 0.034896 AACTCATGTGTCGGTCCACC 59.965 55.000 0.03 0.0 34.35 4.61 R
2588 7703 3.484953 TCTTAGAAGTGGCCCTCCTAA 57.515 47.619 0.00 0.0 0.00 2.69 R
3374 8530 5.473846 TCTGGTCGTCATCATTATCTCTACC 59.526 44.000 0.00 0.0 0.00 3.18 R
3535 8691 7.913674 AGCTTCTAGAAACTTGTTATGAAGG 57.086 36.000 6.63 0.0 32.77 3.46 R
3873 9039 2.267426 TGTTCGTGATCCGTGCATTAG 58.733 47.619 0.00 0.0 37.94 1.73 R
4941 11668 0.304705 GCGCATTCAACATCCCTACG 59.695 55.000 0.30 0.0 0.00 3.51 R
5751 12499 0.032815 GCCTCTCTCGGGATGCTAAC 59.967 60.000 0.00 0.0 0.00 2.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
217 4598 4.453819 GCTATGCCAGGAACAGATATGTTC 59.546 45.833 22.19 22.19 45.31 3.18
232 4613 7.338703 ACAGATATGTTCACATTTGAGAATGCT 59.661 33.333 0.00 0.00 45.25 3.79
433 4815 1.519455 GGCACTCTCAATCCGTCCG 60.519 63.158 0.00 0.00 0.00 4.79
919 5442 5.936372 AGAGGTTTTCGGGTTATGTTCTTAC 59.064 40.000 0.00 0.00 0.00 2.34
925 5455 3.942748 TCGGGTTATGTTCTTACATTGCC 59.057 43.478 0.00 0.00 42.29 4.52
949 5487 3.439129 CCTCCCCGTTGTTTCTTAATCAC 59.561 47.826 0.00 0.00 0.00 3.06
1174 5721 3.442273 GTCTCTTGATCTCTCCACTTCGT 59.558 47.826 0.00 0.00 0.00 3.85
1286 5844 1.260538 ACTGAAGATGCTCAGGGCGA 61.261 55.000 5.76 0.00 46.02 5.54
1313 5871 1.084370 GCAATTCGACCTGGTCCTCG 61.084 60.000 20.68 10.50 0.00 4.63
1644 6243 3.865383 CCAGCCTATGCCAGCGGA 61.865 66.667 0.00 0.00 38.69 5.54
1645 6244 2.190313 CAGCCTATGCCAGCGGAA 59.810 61.111 0.00 0.00 38.69 4.30
1646 6245 1.228063 CAGCCTATGCCAGCGGAAT 60.228 57.895 0.00 0.00 38.69 3.01
1647 6246 1.072159 AGCCTATGCCAGCGGAATC 59.928 57.895 0.00 0.00 38.69 2.52
1648 6247 1.968540 GCCTATGCCAGCGGAATCC 60.969 63.158 0.00 0.00 0.00 3.01
1649 6248 1.302832 CCTATGCCAGCGGAATCCC 60.303 63.158 0.00 0.00 0.00 3.85
1650 6249 1.451504 CTATGCCAGCGGAATCCCA 59.548 57.895 0.00 0.00 0.00 4.37
1651 6250 0.037303 CTATGCCAGCGGAATCCCAT 59.963 55.000 0.00 0.00 0.00 4.00
1652 6251 0.036732 TATGCCAGCGGAATCCCATC 59.963 55.000 0.00 0.00 0.00 3.51
1653 6252 1.713005 ATGCCAGCGGAATCCCATCT 61.713 55.000 0.00 0.00 0.00 2.90
1654 6253 1.053835 TGCCAGCGGAATCCCATCTA 61.054 55.000 0.00 0.00 0.00 1.98
1655 6254 0.108585 GCCAGCGGAATCCCATCTAA 59.891 55.000 0.00 0.00 0.00 2.10
1656 6255 1.884235 CCAGCGGAATCCCATCTAAC 58.116 55.000 0.00 0.00 0.00 2.34
1657 6256 1.543429 CCAGCGGAATCCCATCTAACC 60.543 57.143 0.00 0.00 0.00 2.85
1658 6257 0.393077 AGCGGAATCCCATCTAACCG 59.607 55.000 0.00 0.00 42.63 4.44
1659 6258 0.106149 GCGGAATCCCATCTAACCGT 59.894 55.000 0.00 0.00 41.92 4.83
1660 6259 1.474498 GCGGAATCCCATCTAACCGTT 60.474 52.381 0.00 0.00 41.92 4.44
1661 6260 2.480845 CGGAATCCCATCTAACCGTTC 58.519 52.381 0.00 0.00 36.38 3.95
1662 6261 2.159014 CGGAATCCCATCTAACCGTTCA 60.159 50.000 0.00 0.00 36.38 3.18
1663 6262 3.494398 CGGAATCCCATCTAACCGTTCAT 60.494 47.826 0.00 0.00 36.38 2.57
1664 6263 4.065789 GGAATCCCATCTAACCGTTCATC 58.934 47.826 0.00 0.00 0.00 2.92
1665 6264 3.771577 ATCCCATCTAACCGTTCATCC 57.228 47.619 0.00 0.00 0.00 3.51
1666 6265 1.411246 TCCCATCTAACCGTTCATCCG 59.589 52.381 0.00 0.00 0.00 4.18
1667 6266 1.217882 CCATCTAACCGTTCATCCGC 58.782 55.000 0.00 0.00 0.00 5.54
1668 6267 1.202533 CCATCTAACCGTTCATCCGCT 60.203 52.381 0.00 0.00 0.00 5.52
1669 6268 2.128035 CATCTAACCGTTCATCCGCTC 58.872 52.381 0.00 0.00 0.00 5.03
1670 6269 1.179152 TCTAACCGTTCATCCGCTCA 58.821 50.000 0.00 0.00 0.00 4.26
1671 6270 1.546923 TCTAACCGTTCATCCGCTCAA 59.453 47.619 0.00 0.00 0.00 3.02
1672 6271 2.167693 TCTAACCGTTCATCCGCTCAAT 59.832 45.455 0.00 0.00 0.00 2.57
1673 6272 1.369625 AACCGTTCATCCGCTCAATC 58.630 50.000 0.00 0.00 0.00 2.67
1674 6273 0.806102 ACCGTTCATCCGCTCAATCG 60.806 55.000 0.00 0.00 0.00 3.34
1682 6281 2.203056 CGCTCAATCGGATGGCCA 60.203 61.111 8.56 8.56 0.00 5.36
1683 6282 2.249535 CGCTCAATCGGATGGCCAG 61.250 63.158 13.05 0.00 0.00 4.85
1684 6283 1.153086 GCTCAATCGGATGGCCAGT 60.153 57.895 13.05 0.00 0.00 4.00
1685 6284 1.442526 GCTCAATCGGATGGCCAGTG 61.443 60.000 13.05 3.04 0.00 3.66
1686 6285 0.816825 CTCAATCGGATGGCCAGTGG 60.817 60.000 13.05 4.20 0.00 4.00
1687 6286 1.825191 CAATCGGATGGCCAGTGGG 60.825 63.158 13.05 0.00 37.18 4.61
1688 6287 3.060614 AATCGGATGGCCAGTGGGG 62.061 63.158 13.05 0.00 40.85 4.96
1690 6289 2.907482 ATCGGATGGCCAGTGGGGTA 62.907 60.000 13.05 0.00 39.65 3.69
1691 6290 2.919043 GGATGGCCAGTGGGGTAG 59.081 66.667 13.05 0.00 39.65 3.18
1692 6291 2.193248 GATGGCCAGTGGGGTAGC 59.807 66.667 13.05 0.00 39.65 3.58
1693 6292 2.613696 ATGGCCAGTGGGGTAGCA 60.614 61.111 13.05 0.00 39.65 3.49
1694 6293 2.615227 GATGGCCAGTGGGGTAGCAG 62.615 65.000 13.05 0.00 39.65 4.24
1695 6294 3.009115 GGCCAGTGGGGTAGCAGA 61.009 66.667 12.15 0.00 39.65 4.26
1696 6295 2.586792 GCCAGTGGGGTAGCAGAG 59.413 66.667 12.15 0.00 39.65 3.35
1697 6296 3.036429 GCCAGTGGGGTAGCAGAGG 62.036 68.421 12.15 0.00 39.65 3.69
1698 6297 2.370445 CCAGTGGGGTAGCAGAGGG 61.370 68.421 0.00 0.00 0.00 4.30
1699 6298 2.041265 AGTGGGGTAGCAGAGGGG 59.959 66.667 0.00 0.00 0.00 4.79
1700 6299 2.040606 GTGGGGTAGCAGAGGGGA 59.959 66.667 0.00 0.00 0.00 4.81
1701 6300 2.066999 GTGGGGTAGCAGAGGGGAG 61.067 68.421 0.00 0.00 0.00 4.30
1702 6301 2.446802 GGGGTAGCAGAGGGGAGG 60.447 72.222 0.00 0.00 0.00 4.30
1703 6302 2.369001 GGGTAGCAGAGGGGAGGT 59.631 66.667 0.00 0.00 0.00 3.85
1704 6303 2.066999 GGGTAGCAGAGGGGAGGTG 61.067 68.421 0.00 0.00 0.00 4.00
1705 6304 2.066999 GGTAGCAGAGGGGAGGTGG 61.067 68.421 0.00 0.00 0.00 4.61
1706 6305 1.001760 GTAGCAGAGGGGAGGTGGA 59.998 63.158 0.00 0.00 0.00 4.02
1707 6306 1.001760 TAGCAGAGGGGAGGTGGAC 59.998 63.158 0.00 0.00 0.00 4.02
1708 6307 2.531483 TAGCAGAGGGGAGGTGGACC 62.531 65.000 0.00 0.00 0.00 4.46
1709 6308 3.077556 CAGAGGGGAGGTGGACCG 61.078 72.222 0.00 0.00 42.08 4.79
1710 6309 3.273654 AGAGGGGAGGTGGACCGA 61.274 66.667 0.00 0.00 42.08 4.69
1711 6310 3.075641 GAGGGGAGGTGGACCGAC 61.076 72.222 0.00 0.00 42.08 4.79
1712 6311 3.899545 GAGGGGAGGTGGACCGACA 62.900 68.421 0.00 0.00 42.08 4.35
1713 6312 3.703127 GGGGAGGTGGACCGACAC 61.703 72.222 0.00 0.00 42.08 3.67
1714 6313 2.920912 GGGAGGTGGACCGACACA 60.921 66.667 7.07 0.00 43.08 3.72
1715 6314 2.291043 GGGAGGTGGACCGACACAT 61.291 63.158 7.07 0.33 43.08 3.21
1716 6315 1.079127 GGAGGTGGACCGACACATG 60.079 63.158 0.00 0.00 43.08 3.21
1717 6316 1.541310 GGAGGTGGACCGACACATGA 61.541 60.000 0.00 0.00 43.08 3.07
1718 6317 0.108615 GAGGTGGACCGACACATGAG 60.109 60.000 0.00 0.00 43.08 2.90
1719 6318 0.832135 AGGTGGACCGACACATGAGT 60.832 55.000 0.00 0.00 43.08 3.41
1720 6319 0.034896 GGTGGACCGACACATGAGTT 59.965 55.000 0.00 0.00 43.08 3.01
1721 6320 1.274167 GGTGGACCGACACATGAGTTA 59.726 52.381 0.00 0.00 43.08 2.24
1722 6321 2.093658 GGTGGACCGACACATGAGTTAT 60.094 50.000 0.00 0.00 43.08 1.89
1723 6322 2.930040 GTGGACCGACACATGAGTTATG 59.070 50.000 0.00 0.00 40.99 1.90
1724 6323 2.829120 TGGACCGACACATGAGTTATGA 59.171 45.455 0.00 0.00 39.21 2.15
1725 6324 3.119137 TGGACCGACACATGAGTTATGAG 60.119 47.826 0.00 0.00 39.21 2.90
1726 6325 3.448686 GACCGACACATGAGTTATGAGG 58.551 50.000 0.00 0.77 39.21 3.86
1727 6326 2.168521 ACCGACACATGAGTTATGAGGG 59.831 50.000 0.00 0.31 39.21 4.30
1728 6327 2.483714 CCGACACATGAGTTATGAGGGG 60.484 54.545 0.00 0.00 39.21 4.79
1729 6328 2.483714 CGACACATGAGTTATGAGGGGG 60.484 54.545 0.00 0.00 39.21 5.40
1746 6345 2.143419 GGGCGTGGGATCCAGATCT 61.143 63.158 15.23 0.00 37.92 2.75
1959 6770 1.479323 GGACGTGGATAGGTTAGCACA 59.521 52.381 0.00 0.00 0.00 4.57
2130 7216 4.020928 AGCCAATTGCATTCAAAGATGTCA 60.021 37.500 0.00 0.00 44.83 3.58
2202 7290 5.431420 AGTCTAGAGTTCAGTATCATGCG 57.569 43.478 0.00 0.00 0.00 4.73
2248 7339 9.953697 CGAGCTTAGTAAGAGTAATTATCACTT 57.046 33.333 14.27 0.00 0.00 3.16
2491 7586 6.095300 TGTTTTCTATGGTGGCATGAGTAATG 59.905 38.462 0.00 0.00 39.49 1.90
2629 7747 7.726033 AAGAAGATACATTGAGTAGGTCACT 57.274 36.000 0.00 0.00 41.47 3.41
2713 7834 7.649306 GTCATGTTATTTTTGACAGAAAGTGCT 59.351 33.333 0.00 0.00 39.59 4.40
2714 7835 8.196771 TCATGTTATTTTTGACAGAAAGTGCTT 58.803 29.630 0.00 0.00 0.00 3.91
3039 8191 9.146984 AGTTTGCATTGAAACATCAGATTTATG 57.853 29.630 2.09 0.00 38.14 1.90
3119 8274 5.514274 ACACATTGGAAAACATCGAACTT 57.486 34.783 0.00 0.00 0.00 2.66
3121 8276 7.033530 ACACATTGGAAAACATCGAACTTAA 57.966 32.000 0.00 0.00 0.00 1.85
3535 8691 2.863809 AGGGTGAAATGGACAACTGAC 58.136 47.619 0.00 0.00 0.00 3.51
3914 9080 6.500684 ACATGTGTGTGATTGTAATTCCTC 57.499 37.500 0.00 0.00 37.14 3.71
3926 9092 4.111577 TGTAATTCCTCTTGTCCCTGGAT 58.888 43.478 0.00 0.00 0.00 3.41
3938 9104 3.072915 TGTCCCTGGATATGTAAGGCATG 59.927 47.826 0.00 0.00 38.47 4.06
3948 9114 6.425114 GGATATGTAAGGCATGTCTTGTACAG 59.575 42.308 22.74 0.00 42.89 2.74
3954 9120 2.489329 GGCATGTCTTGTACAGTGCATT 59.511 45.455 15.87 0.00 42.70 3.56
4657 9844 5.333339 GCACTTTATACACATATGCTCGGTG 60.333 44.000 1.58 0.00 38.47 4.94
4682 9869 6.156748 AGTTGGTAGTTGTTCCAATTTTCC 57.843 37.500 0.00 0.00 44.03 3.13
4782 9969 1.003580 ACATCTCATGTCCCACCACAC 59.996 52.381 0.00 0.00 39.92 3.82
4941 11668 1.282382 TACCTACCAACCCAAGCTCC 58.718 55.000 0.00 0.00 0.00 4.70
5046 11773 6.322201 GGGAAGGCTTCAATGAGAAAATATCA 59.678 38.462 27.17 0.00 35.40 2.15
5068 11795 3.173599 CCATTCAACATAGCAAGCAACG 58.826 45.455 0.00 0.00 0.00 4.10
5148 11877 6.978343 TCAAAAACCGAGACTAATATGGTG 57.022 37.500 0.00 0.00 32.14 4.17
5153 11882 5.517322 ACCGAGACTAATATGGTGAACTC 57.483 43.478 0.00 0.00 0.00 3.01
5173 11902 8.307483 TGAACTCTGGAAGAACTATTTCTACAG 58.693 37.037 15.55 15.55 46.34 2.74
5174 11903 7.176589 ACTCTGGAAGAACTATTTCTACAGG 57.823 40.000 18.83 14.44 46.34 4.00
5221 11950 4.081365 TCGTCACATTAACTCCAATGCCTA 60.081 41.667 0.00 0.00 39.13 3.93
5222 11951 4.271049 CGTCACATTAACTCCAATGCCTAG 59.729 45.833 0.00 0.00 39.13 3.02
5285 12014 7.275920 AGTATGGTTAATCAACAAGAGCCTAG 58.724 38.462 0.00 0.00 36.29 3.02
5300 12029 4.832266 AGAGCCTAGTGATCTACTGAATGG 59.168 45.833 7.74 6.27 40.65 3.16
5344 12073 9.938280 CGGATGATATTACCAACCTTCTAAATA 57.062 33.333 0.00 0.00 0.00 1.40
5528 12264 3.930336 TGTTTTTGCATGTGTGTTGGAA 58.070 36.364 0.00 0.00 0.00 3.53
5627 12363 0.027194 CGATTGTGCCGATGCTTCTG 59.973 55.000 0.00 0.00 38.71 3.02
5662 12405 9.691362 AGCTTTTAAGTATGTGTTGTATTTTGG 57.309 29.630 0.00 0.00 0.00 3.28
5686 12434 9.307121 TGGGATAAAATAATGTTTTGTTATGCG 57.693 29.630 0.00 0.00 0.00 4.73
5692 12440 7.684062 AATAATGTTTTGTTATGCGAGATGC 57.316 32.000 0.00 0.00 46.70 3.91
5693 12441 4.970662 ATGTTTTGTTATGCGAGATGCT 57.029 36.364 0.00 0.00 46.63 3.79
5694 12442 4.764679 TGTTTTGTTATGCGAGATGCTT 57.235 36.364 0.00 0.00 46.63 3.91
5696 12444 4.215185 TGTTTTGTTATGCGAGATGCTTCA 59.785 37.500 2.07 0.00 46.63 3.02
5751 12499 3.748048 TGCATCTTTCTCCGAGAAAACAG 59.252 43.478 21.22 14.93 42.95 3.16
5752 12500 3.748568 GCATCTTTCTCCGAGAAAACAGT 59.251 43.478 21.22 7.72 42.95 3.55
5881 12629 8.411683 ACTTTATGAAGGTAGAACGGTAGTATG 58.588 37.037 1.95 0.00 37.19 2.39
5913 12661 7.326789 ACAATTTCATAAAAGATCTGCAACACG 59.673 33.333 0.00 0.00 0.00 4.49
5922 12670 1.673993 CTGCAACACGGCCATGGTA 60.674 57.895 14.67 0.00 0.00 3.25
5929 12677 0.036388 CACGGCCATGGTAAGTGTCT 60.036 55.000 14.67 0.00 0.00 3.41
6018 12766 3.493699 GCTAGCCCAACGACCATAATACA 60.494 47.826 2.29 0.00 0.00 2.29
6039 12787 3.971702 GCCACCCTCTGCCACCTT 61.972 66.667 0.00 0.00 0.00 3.50
6134 12882 2.185350 CTACCACCTGCAGAGGCG 59.815 66.667 17.39 7.85 44.33 5.52
6146 12894 1.610363 CAGAGGCGATGGAGCTACTA 58.390 55.000 0.00 0.00 37.29 1.82
6147 12895 1.539388 CAGAGGCGATGGAGCTACTAG 59.461 57.143 0.00 0.00 37.29 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 4424 3.370953 GCCTTCACCACAGGTCATATCTT 60.371 47.826 0.00 0.00 31.02 2.40
217 4598 6.623486 TGTTTCCATAGCATTCTCAAATGTG 58.377 36.000 0.63 0.00 43.54 3.21
232 4613 7.847711 TCAGATTTCCCTTTTTGTTTCCATA 57.152 32.000 0.00 0.00 0.00 2.74
253 4634 1.679032 GGTTTCGTTCCCCTCCATCAG 60.679 57.143 0.00 0.00 0.00 2.90
433 4815 4.277672 GTGTCCTTTTACTTCCTTTGACCC 59.722 45.833 0.00 0.00 0.00 4.46
509 4904 5.527033 TCGAGCACAAAGATATCATCTGAG 58.473 41.667 5.32 0.00 40.13 3.35
850 5365 5.243207 CCACCTCTATTAAGAAACAACGGT 58.757 41.667 0.00 0.00 0.00 4.83
925 5455 0.320946 TAAGAAACAACGGGGAGGCG 60.321 55.000 0.00 0.00 0.00 5.52
949 5487 7.975616 TCAAAGAAAACACCATCAAGAAAAGAG 59.024 33.333 0.00 0.00 0.00 2.85
1174 5721 5.279657 CCGATTCTGATCTAATGGACCATGA 60.280 44.000 8.02 2.00 0.00 3.07
1267 5825 1.220206 CGCCCTGAGCATCTTCAGT 59.780 57.895 2.73 0.00 42.41 3.41
1286 5844 1.065854 CAGGTCGAATTGCTCCTTCCT 60.066 52.381 0.00 0.00 0.00 3.36
1511 6087 0.390492 TAGGATCTCACATGCTGCCG 59.610 55.000 0.00 0.00 0.00 5.69
1635 6219 1.053835 TAGATGGGATTCCGCTGGCA 61.054 55.000 0.00 0.00 35.24 4.92
1636 6220 0.108585 TTAGATGGGATTCCGCTGGC 59.891 55.000 0.00 0.00 35.24 4.85
1644 6243 3.494398 CGGATGAACGGTTAGATGGGATT 60.494 47.826 0.00 0.00 0.00 3.01
1645 6244 2.037251 CGGATGAACGGTTAGATGGGAT 59.963 50.000 0.00 0.00 0.00 3.85
1646 6245 1.411246 CGGATGAACGGTTAGATGGGA 59.589 52.381 0.00 0.00 0.00 4.37
1647 6246 1.865865 CGGATGAACGGTTAGATGGG 58.134 55.000 0.00 0.00 0.00 4.00
1648 6247 1.202533 AGCGGATGAACGGTTAGATGG 60.203 52.381 0.00 0.00 42.53 3.51
1649 6248 2.128035 GAGCGGATGAACGGTTAGATG 58.872 52.381 0.00 0.00 45.44 2.90
1650 6249 1.754803 TGAGCGGATGAACGGTTAGAT 59.245 47.619 0.00 0.00 45.44 1.98
1651 6250 1.179152 TGAGCGGATGAACGGTTAGA 58.821 50.000 0.00 0.00 45.44 2.10
1652 6251 2.004583 TTGAGCGGATGAACGGTTAG 57.995 50.000 0.00 0.00 45.44 2.34
1653 6252 2.546778 GATTGAGCGGATGAACGGTTA 58.453 47.619 0.00 0.00 45.44 2.85
1654 6253 1.369625 GATTGAGCGGATGAACGGTT 58.630 50.000 0.00 0.00 45.44 4.44
1656 6255 1.927210 CGATTGAGCGGATGAACGG 59.073 57.895 0.00 0.00 0.00 4.44
1665 6264 2.203056 TGGCCATCCGATTGAGCG 60.203 61.111 0.00 0.00 34.14 5.03
1666 6265 1.153086 ACTGGCCATCCGATTGAGC 60.153 57.895 5.51 0.00 34.14 4.26
1667 6266 0.816825 CCACTGGCCATCCGATTGAG 60.817 60.000 5.51 0.00 34.14 3.02
1668 6267 1.224315 CCACTGGCCATCCGATTGA 59.776 57.895 5.51 0.00 34.14 2.57
1669 6268 1.825191 CCCACTGGCCATCCGATTG 60.825 63.158 5.51 0.00 34.14 2.67
1670 6269 2.597340 CCCACTGGCCATCCGATT 59.403 61.111 5.51 0.00 34.14 3.34
1671 6270 2.907482 TACCCCACTGGCCATCCGAT 62.907 60.000 5.51 0.00 37.83 4.18
1672 6271 3.627332 TACCCCACTGGCCATCCGA 62.627 63.158 5.51 0.00 37.83 4.55
1673 6272 3.087253 TACCCCACTGGCCATCCG 61.087 66.667 5.51 0.00 37.83 4.18
1674 6273 2.919043 CTACCCCACTGGCCATCC 59.081 66.667 5.51 0.00 37.83 3.51
1675 6274 2.193248 GCTACCCCACTGGCCATC 59.807 66.667 5.51 0.00 37.83 3.51
1676 6275 2.613696 TGCTACCCCACTGGCCAT 60.614 61.111 5.51 0.00 37.83 4.40
1677 6276 3.329889 CTGCTACCCCACTGGCCA 61.330 66.667 4.71 4.71 37.83 5.36
1678 6277 3.009115 TCTGCTACCCCACTGGCC 61.009 66.667 0.00 0.00 37.83 5.36
1679 6278 2.586792 CTCTGCTACCCCACTGGC 59.413 66.667 0.00 0.00 37.83 4.85
1680 6279 2.370445 CCCTCTGCTACCCCACTGG 61.370 68.421 0.00 0.00 41.37 4.00
1681 6280 2.370445 CCCCTCTGCTACCCCACTG 61.370 68.421 0.00 0.00 0.00 3.66
1682 6281 2.041265 CCCCTCTGCTACCCCACT 59.959 66.667 0.00 0.00 0.00 4.00
1683 6282 2.040606 TCCCCTCTGCTACCCCAC 59.959 66.667 0.00 0.00 0.00 4.61
1684 6283 2.368594 CTCCCCTCTGCTACCCCA 59.631 66.667 0.00 0.00 0.00 4.96
1685 6284 2.446802 CCTCCCCTCTGCTACCCC 60.447 72.222 0.00 0.00 0.00 4.95
1686 6285 2.066999 CACCTCCCCTCTGCTACCC 61.067 68.421 0.00 0.00 0.00 3.69
1687 6286 2.066999 CCACCTCCCCTCTGCTACC 61.067 68.421 0.00 0.00 0.00 3.18
1688 6287 1.001760 TCCACCTCCCCTCTGCTAC 59.998 63.158 0.00 0.00 0.00 3.58
1689 6288 1.001760 GTCCACCTCCCCTCTGCTA 59.998 63.158 0.00 0.00 0.00 3.49
1690 6289 2.284995 GTCCACCTCCCCTCTGCT 60.285 66.667 0.00 0.00 0.00 4.24
1691 6290 3.403558 GGTCCACCTCCCCTCTGC 61.404 72.222 0.00 0.00 0.00 4.26
1692 6291 3.077556 CGGTCCACCTCCCCTCTG 61.078 72.222 0.00 0.00 0.00 3.35
1693 6292 3.273654 TCGGTCCACCTCCCCTCT 61.274 66.667 0.00 0.00 0.00 3.69
1694 6293 3.075641 GTCGGTCCACCTCCCCTC 61.076 72.222 0.00 0.00 0.00 4.30
1695 6294 3.923645 TGTCGGTCCACCTCCCCT 61.924 66.667 0.00 0.00 0.00 4.79
1696 6295 3.703127 GTGTCGGTCCACCTCCCC 61.703 72.222 0.00 0.00 0.00 4.81
1697 6296 2.291043 ATGTGTCGGTCCACCTCCC 61.291 63.158 0.00 0.00 34.35 4.30
1698 6297 1.079127 CATGTGTCGGTCCACCTCC 60.079 63.158 0.00 0.00 34.35 4.30
1699 6298 0.108615 CTCATGTGTCGGTCCACCTC 60.109 60.000 0.00 0.00 34.35 3.85
1700 6299 0.832135 ACTCATGTGTCGGTCCACCT 60.832 55.000 0.00 0.00 34.35 4.00
1701 6300 0.034896 AACTCATGTGTCGGTCCACC 59.965 55.000 0.03 0.00 34.35 4.61
1702 6301 2.736144 TAACTCATGTGTCGGTCCAC 57.264 50.000 0.03 0.00 35.86 4.02
1703 6302 2.829120 TCATAACTCATGTGTCGGTCCA 59.171 45.455 0.03 0.00 35.96 4.02
1704 6303 3.448686 CTCATAACTCATGTGTCGGTCC 58.551 50.000 0.03 0.00 35.96 4.46
1705 6304 3.448686 CCTCATAACTCATGTGTCGGTC 58.551 50.000 0.03 0.00 35.96 4.79
1706 6305 2.168521 CCCTCATAACTCATGTGTCGGT 59.831 50.000 0.03 0.00 35.96 4.69
1707 6306 2.483714 CCCCTCATAACTCATGTGTCGG 60.484 54.545 0.03 0.00 35.96 4.79
1708 6307 2.483714 CCCCCTCATAACTCATGTGTCG 60.484 54.545 0.03 0.00 35.96 4.35
1709 6308 3.199880 CCCCCTCATAACTCATGTGTC 57.800 52.381 0.03 0.00 35.96 3.67
1727 6326 3.171388 ATCTGGATCCCACGCCCC 61.171 66.667 9.90 0.00 0.00 5.80
1728 6327 2.105806 GAGATCTGGATCCCACGCCC 62.106 65.000 9.90 0.00 38.58 6.13
1729 6328 1.369321 GAGATCTGGATCCCACGCC 59.631 63.158 9.90 0.00 38.58 5.68
1730 6329 0.683973 ATGAGATCTGGATCCCACGC 59.316 55.000 9.90 0.60 38.58 5.34
1731 6330 2.246469 AGATGAGATCTGGATCCCACG 58.754 52.381 9.90 0.00 38.44 4.94
1732 6331 4.020662 GGTTAGATGAGATCTGGATCCCAC 60.021 50.000 9.90 1.57 40.51 4.61
1733 6332 4.163427 GGTTAGATGAGATCTGGATCCCA 58.837 47.826 9.90 0.00 40.51 4.37
1734 6333 3.194542 CGGTTAGATGAGATCTGGATCCC 59.805 52.174 9.90 0.00 40.51 3.85
1735 6334 3.829601 ACGGTTAGATGAGATCTGGATCC 59.170 47.826 4.20 4.20 40.51 3.36
1736 6335 5.010112 TGAACGGTTAGATGAGATCTGGATC 59.990 44.000 0.00 1.26 40.51 3.36
1737 6336 4.895889 TGAACGGTTAGATGAGATCTGGAT 59.104 41.667 0.00 0.00 40.51 3.41
1738 6337 4.278310 TGAACGGTTAGATGAGATCTGGA 58.722 43.478 0.00 0.00 40.51 3.86
1739 6338 4.655762 TGAACGGTTAGATGAGATCTGG 57.344 45.455 0.00 0.00 40.51 3.86
1740 6339 5.010516 AGGATGAACGGTTAGATGAGATCTG 59.989 44.000 0.00 0.00 40.51 2.90
1741 6340 5.144100 AGGATGAACGGTTAGATGAGATCT 58.856 41.667 0.00 0.00 43.33 2.75
1746 6345 5.800296 TCAAAAGGATGAACGGTTAGATGA 58.200 37.500 0.00 0.00 0.00 2.92
1788 6593 1.302832 CACCTCAGTTCTGCCACCC 60.303 63.158 0.00 0.00 0.00 4.61
1792 6597 0.460987 CGATCCACCTCAGTTCTGCC 60.461 60.000 0.00 0.00 0.00 4.85
2108 7194 4.247258 TGACATCTTTGAATGCAATTGGC 58.753 39.130 7.72 0.15 36.07 4.52
2202 7290 8.097078 AGCTCGATTACCCATATATATCGTAC 57.903 38.462 12.31 7.66 39.17 3.67
2248 7339 6.385759 ACATAGTGGGGTCTACATTACATTGA 59.614 38.462 0.00 0.00 0.00 2.57
2491 7586 7.912250 CCTTGAATAATGTCAGTACAGAATTGC 59.088 37.037 0.00 0.00 39.49 3.56
2588 7703 3.484953 TCTTAGAAGTGGCCCTCCTAA 57.515 47.619 0.00 0.00 0.00 2.69
2595 7713 6.349300 TCAATGTATCTTCTTAGAAGTGGCC 58.651 40.000 19.87 0.00 33.20 5.36
2642 7760 6.120905 AGCTCAACTAATCTGCATGATTTCT 58.879 36.000 14.02 1.54 42.28 2.52
2643 7762 6.374565 AGCTCAACTAATCTGCATGATTTC 57.625 37.500 14.02 0.00 42.28 2.17
2649 7768 7.786030 TCTAGTTTAGCTCAACTAATCTGCAT 58.214 34.615 18.60 0.00 40.55 3.96
2684 7804 7.643764 ACTTTCTGTCAAAAATAACATGACACG 59.356 33.333 0.00 2.20 46.11 4.49
2691 7812 7.918562 GGTAAGCACTTTCTGTCAAAAATAACA 59.081 33.333 0.00 0.00 0.00 2.41
2692 7813 7.918562 TGGTAAGCACTTTCTGTCAAAAATAAC 59.081 33.333 0.00 0.00 0.00 1.89
2901 8033 9.987272 CAACTAGGTAAATCAGATCATCACATA 57.013 33.333 0.00 0.00 0.00 2.29
2977 8111 9.578576 AACATTCATACACTCAATATAATGGCT 57.421 29.630 0.00 0.00 0.00 4.75
3039 8191 8.826710 TGATTTTCAAATGATATCACGACTACC 58.173 33.333 7.78 0.00 0.00 3.18
3374 8530 5.473846 TCTGGTCGTCATCATTATCTCTACC 59.526 44.000 0.00 0.00 0.00 3.18
3535 8691 7.913674 AGCTTCTAGAAACTTGTTATGAAGG 57.086 36.000 6.63 0.00 32.77 3.46
3873 9039 2.267426 TGTTCGTGATCCGTGCATTAG 58.733 47.619 0.00 0.00 37.94 1.73
3914 9080 3.136443 TGCCTTACATATCCAGGGACAAG 59.864 47.826 0.00 0.00 0.00 3.16
3926 9092 6.106003 CACTGTACAAGACATGCCTTACATA 58.894 40.000 0.00 0.00 36.64 2.29
3938 9104 4.307834 CGTGTAATGCACTGTACAAGAC 57.692 45.455 11.90 0.00 45.57 3.01
3954 9120 5.748630 CAGCTTCTAATAGAATGTGCGTGTA 59.251 40.000 2.87 0.00 33.13 2.90
4441 9627 7.242359 ACATAGGAAGTACCAGAGCTATATGT 58.758 38.462 0.00 0.00 42.04 2.29
4511 9697 4.636206 AGTAACTTCGAAGATTTGATGGGC 59.364 41.667 31.08 8.73 35.04 5.36
4682 9869 7.361799 GGTTGTTATAGTTCCTAGCAAAACCTG 60.362 40.741 0.00 0.00 31.60 4.00
4782 9969 3.374058 GGTTGATCCTTGGTATGTTCACG 59.626 47.826 0.00 0.00 0.00 4.35
4881 11608 2.489971 TCATTGAAACCCGTCACTGAC 58.510 47.619 0.00 0.00 33.65 3.51
4941 11668 0.304705 GCGCATTCAACATCCCTACG 59.695 55.000 0.30 0.00 0.00 3.51
5046 11773 3.366273 CGTTGCTTGCTATGTTGAATGGT 60.366 43.478 0.00 0.00 0.00 3.55
5068 11795 0.461961 ATCGTCCCTACTGAGCTTGC 59.538 55.000 0.00 0.00 0.00 4.01
5148 11877 7.762159 CCTGTAGAAATAGTTCTTCCAGAGTTC 59.238 40.741 23.13 4.19 41.55 3.01
5153 11882 6.819146 GGAACCTGTAGAAATAGTTCTTCCAG 59.181 42.308 11.16 15.65 41.55 3.86
5174 11903 7.148623 CGAAACTATCTGTCTAAAGGTTGGAAC 60.149 40.741 0.00 0.00 0.00 3.62
5185 11914 8.737175 AGTTAATGTGACGAAACTATCTGTCTA 58.263 33.333 0.00 0.00 34.66 2.59
5194 11923 5.334879 GCATTGGAGTTAATGTGACGAAACT 60.335 40.000 0.00 0.00 39.62 2.66
5221 11950 2.937689 AGCTGCATCCCCACCACT 60.938 61.111 1.02 0.00 0.00 4.00
5222 11951 2.753043 CAGCTGCATCCCCACCAC 60.753 66.667 0.00 0.00 0.00 4.16
5300 12029 1.270550 CCGATGGGAAGGCATTAATGC 59.729 52.381 28.68 28.68 44.33 3.56
5314 12043 5.165961 AGGTTGGTAATATCATCCGATGG 57.834 43.478 8.54 0.00 32.73 3.51
5627 12363 8.095937 ACACATACTTAAAAGCTAAAGGTGAC 57.904 34.615 13.34 0.00 0.00 3.67
5751 12499 0.032815 GCCTCTCTCGGGATGCTAAC 59.967 60.000 0.00 0.00 0.00 2.34
5752 12500 0.397114 TGCCTCTCTCGGGATGCTAA 60.397 55.000 0.00 0.00 0.00 3.09
5881 12629 8.642020 GCAGATCTTTTATGAAATTGTGTTGTC 58.358 33.333 0.00 0.00 0.00 3.18
5899 12647 0.322816 ATGGCCGTGTTGCAGATCTT 60.323 50.000 0.00 0.00 0.00 2.40
5913 12661 1.369091 CGCAGACACTTACCATGGCC 61.369 60.000 13.04 0.00 0.00 5.36
5922 12670 1.972978 GGACCTACCGCAGACACTT 59.027 57.895 0.00 0.00 0.00 3.16
6039 12787 0.322277 ACGTGAAGTCGAGGAGGCTA 60.322 55.000 0.00 0.00 32.25 3.93
6134 12882 1.268352 CGCAGGACTAGTAGCTCCATC 59.732 57.143 16.40 9.25 0.00 3.51
6146 12894 1.680522 CCAGATGTAGGCGCAGGACT 61.681 60.000 10.83 0.00 34.28 3.85
6147 12895 1.227380 CCAGATGTAGGCGCAGGAC 60.227 63.158 10.83 3.91 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.