Multiple sequence alignment - TraesCS7A01G501500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G501500 chr7A 100.000 3634 0 0 1 3634 691261048 691257415 0.000000e+00 6711.0
1 TraesCS7A01G501500 chr7A 89.423 104 9 1 636 739 691059576 691059677 2.940000e-26 130.0
2 TraesCS7A01G501500 chr7A 97.143 35 1 0 3302 3336 691257671 691257637 3.920000e-05 60.2
3 TraesCS7A01G501500 chr7A 97.143 35 1 0 3378 3412 691257747 691257713 3.920000e-05 60.2
4 TraesCS7A01G501500 chr7D 86.923 2600 220 50 105 2642 598667139 598664598 0.000000e+00 2808.0
5 TraesCS7A01G501500 chr7D 78.533 368 46 12 101 465 599462061 599461724 1.020000e-50 211.0
6 TraesCS7A01G501500 chr7D 83.684 190 15 8 3129 3307 598664168 598663984 8.070000e-37 165.0
7 TraesCS7A01G501500 chr7D 90.476 105 7 2 636 739 598585717 598585819 6.330000e-28 135.0
8 TraesCS7A01G501500 chr7D 94.828 58 3 0 2026 2083 598665114 598665057 1.390000e-14 91.6
9 TraesCS7A01G501500 chr7B 87.349 2490 222 43 611 3045 678283621 678281170 0.000000e+00 2767.0
10 TraesCS7A01G501500 chr7B 86.420 486 39 12 105 567 678284110 678283629 1.160000e-139 507.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G501500 chr7A 691257415 691261048 3633 True 2277.133333 6711 98.095333 1 3634 3 chr7A.!!$R1 3633
1 TraesCS7A01G501500 chr7D 598663984 598667139 3155 True 1021.533333 2808 88.478333 105 3307 3 chr7D.!!$R2 3202
2 TraesCS7A01G501500 chr7B 678281170 678284110 2940 True 1637.000000 2767 86.884500 105 3045 2 chr7B.!!$R1 2940

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
55 56 0.613260 AGTGGCAGTTAGAATGGCGA 59.387 50.0 0.00 0.0 45.63 5.54 F
958 1001 0.870393 CACAGGACTGCACACATCAC 59.130 55.0 0.00 0.0 0.00 3.06 F
1038 1100 0.034756 TTCTTCTTGTGGCGCTGCTA 59.965 50.0 7.64 0.0 0.00 3.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1019 1081 0.034756 TAGCAGCGCCACAAGAAGAA 59.965 50.0 2.29 0.00 0.00 2.52 R
2179 2288 0.035458 CTTGAGCCGGAACCTGAACT 59.965 55.0 5.05 0.00 0.00 3.01 R
2680 2811 0.036765 ACGCGTGATGAAGGCCTTAA 60.037 50.0 20.54 12.74 36.27 1.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.488126 GCTACACTGCATGTTGAAAGAA 57.512 40.909 12.26 0.00 43.19 2.52
22 23 4.858935 GCTACACTGCATGTTGAAAGAAA 58.141 39.130 12.26 0.00 43.19 2.52
23 24 5.280945 GCTACACTGCATGTTGAAAGAAAA 58.719 37.500 12.26 0.00 43.19 2.29
24 25 5.748152 GCTACACTGCATGTTGAAAGAAAAA 59.252 36.000 12.26 0.00 43.19 1.94
53 54 1.098050 CCAGTGGCAGTTAGAATGGC 58.902 55.000 0.00 0.00 43.16 4.40
54 55 0.729116 CAGTGGCAGTTAGAATGGCG 59.271 55.000 0.00 0.00 45.63 5.69
55 56 0.613260 AGTGGCAGTTAGAATGGCGA 59.387 50.000 0.00 0.00 45.63 5.54
56 57 1.210478 AGTGGCAGTTAGAATGGCGAT 59.790 47.619 0.00 0.00 45.63 4.58
57 58 2.017049 GTGGCAGTTAGAATGGCGATT 58.983 47.619 0.00 0.00 45.63 3.34
58 59 2.423538 GTGGCAGTTAGAATGGCGATTT 59.576 45.455 0.00 0.00 45.63 2.17
59 60 2.423185 TGGCAGTTAGAATGGCGATTTG 59.577 45.455 0.00 0.00 45.63 2.32
60 61 2.223572 GGCAGTTAGAATGGCGATTTGG 60.224 50.000 0.00 0.00 33.23 3.28
61 62 2.423538 GCAGTTAGAATGGCGATTTGGT 59.576 45.455 0.00 0.00 0.00 3.67
62 63 3.625764 GCAGTTAGAATGGCGATTTGGTA 59.374 43.478 0.00 0.00 0.00 3.25
63 64 4.495844 GCAGTTAGAATGGCGATTTGGTAC 60.496 45.833 0.00 0.00 0.00 3.34
64 65 4.634004 CAGTTAGAATGGCGATTTGGTACA 59.366 41.667 0.00 0.00 0.00 2.90
65 66 4.876107 AGTTAGAATGGCGATTTGGTACAG 59.124 41.667 0.00 0.00 42.39 2.74
66 67 2.643551 AGAATGGCGATTTGGTACAGG 58.356 47.619 0.00 0.00 42.39 4.00
67 68 2.238646 AGAATGGCGATTTGGTACAGGA 59.761 45.455 0.00 0.00 42.39 3.86
68 69 2.332063 ATGGCGATTTGGTACAGGAG 57.668 50.000 0.00 0.00 42.39 3.69
69 70 0.981183 TGGCGATTTGGTACAGGAGT 59.019 50.000 0.00 0.00 42.39 3.85
70 71 1.338674 TGGCGATTTGGTACAGGAGTG 60.339 52.381 0.00 0.00 42.39 3.51
71 72 1.338769 GGCGATTTGGTACAGGAGTGT 60.339 52.381 0.00 0.00 42.39 3.55
72 73 2.093869 GGCGATTTGGTACAGGAGTGTA 60.094 50.000 0.00 0.00 42.39 2.90
73 74 3.187700 GCGATTTGGTACAGGAGTGTAG 58.812 50.000 0.00 0.00 39.93 2.74
74 75 3.119245 GCGATTTGGTACAGGAGTGTAGA 60.119 47.826 0.00 0.00 39.93 2.59
75 76 4.619863 GCGATTTGGTACAGGAGTGTAGAA 60.620 45.833 0.00 0.00 39.93 2.10
76 77 5.661458 CGATTTGGTACAGGAGTGTAGAAT 58.339 41.667 0.00 0.00 39.93 2.40
77 78 5.520288 CGATTTGGTACAGGAGTGTAGAATG 59.480 44.000 0.00 0.00 39.93 2.67
78 79 6.620877 ATTTGGTACAGGAGTGTAGAATGA 57.379 37.500 0.00 0.00 39.93 2.57
79 80 6.620877 TTTGGTACAGGAGTGTAGAATGAT 57.379 37.500 0.00 0.00 39.93 2.45
80 81 6.620877 TTGGTACAGGAGTGTAGAATGATT 57.379 37.500 0.00 0.00 39.93 2.57
81 82 7.727578 TTGGTACAGGAGTGTAGAATGATTA 57.272 36.000 0.00 0.00 39.93 1.75
82 83 7.348080 TGGTACAGGAGTGTAGAATGATTAG 57.652 40.000 0.00 0.00 39.93 1.73
83 84 6.895756 TGGTACAGGAGTGTAGAATGATTAGT 59.104 38.462 0.00 0.00 39.93 2.24
84 85 8.057011 TGGTACAGGAGTGTAGAATGATTAGTA 58.943 37.037 0.00 0.00 39.93 1.82
85 86 9.080097 GGTACAGGAGTGTAGAATGATTAGTAT 57.920 37.037 0.00 0.00 39.93 2.12
102 103 9.170890 TGATTAGTATTATTCATGGGAAGGAGT 57.829 33.333 0.00 0.00 36.25 3.85
103 104 9.442047 GATTAGTATTATTCATGGGAAGGAGTG 57.558 37.037 0.00 0.00 36.25 3.51
180 186 6.323739 CAGGCCTAAATTATATTTGTGGTGGT 59.676 38.462 3.98 0.00 0.00 4.16
214 220 1.114627 TAGCGTCCAGTCATCATGCT 58.885 50.000 0.00 0.00 35.12 3.79
229 235 2.028043 GCTGCCGCAGTTGCTTTT 59.972 55.556 21.29 0.00 39.32 2.27
249 255 1.971167 TTCCATGCGGTGCACCTTC 60.971 57.895 32.28 23.25 43.04 3.46
277 283 5.665812 ACTACAGAATCCCAGCCTGTAATTA 59.334 40.000 0.00 0.00 41.24 1.40
287 293 6.723977 TCCCAGCCTGTAATTATTTTGTCTTT 59.276 34.615 0.00 0.00 0.00 2.52
290 296 9.736023 CCAGCCTGTAATTATTTTGTCTTTATC 57.264 33.333 0.00 0.00 0.00 1.75
325 331 1.196127 GTTAAGGTTCGGAGGTTTGCG 59.804 52.381 0.00 0.00 39.77 4.85
352 358 6.916387 TCACTCTTAACTACTGTCAAAGTTCG 59.084 38.462 4.02 0.00 40.56 3.95
384 394 7.911727 CGACATCAGCATCAAATTTATTCTTCA 59.088 33.333 0.00 0.00 0.00 3.02
386 396 8.963725 ACATCAGCATCAAATTTATTCTTCAGA 58.036 29.630 0.00 0.00 0.00 3.27
412 422 6.638063 TCAGATGAAAACTTTTTGCTCGATTG 59.362 34.615 0.00 0.00 0.00 2.67
414 424 5.255710 TGAAAACTTTTTGCTCGATTGGA 57.744 34.783 0.00 0.00 0.00 3.53
424 436 4.412796 TGCTCGATTGGAGATTCTTCAT 57.587 40.909 0.00 0.00 46.23 2.57
443 455 9.486497 TTCTTCATATGAGATGCAAACTAGATC 57.514 33.333 5.39 0.00 0.00 2.75
467 479 7.284074 TCCACTTCCTTTGTTAGATGTTACAA 58.716 34.615 0.00 0.00 32.76 2.41
485 504 8.279970 TGTTACAATTGATAACTCCATTCCAG 57.720 34.615 13.59 0.00 34.28 3.86
486 505 5.841957 ACAATTGATAACTCCATTCCAGC 57.158 39.130 13.59 0.00 0.00 4.85
509 532 3.133691 TCTTGCGATGATATGTTGGAGC 58.866 45.455 0.00 0.00 0.00 4.70
555 593 6.918892 TTACTCACTATGCGCATTTACAAT 57.081 33.333 30.42 13.13 0.00 2.71
559 597 6.483307 ACTCACTATGCGCATTTACAATATGT 59.517 34.615 30.42 12.69 0.00 2.29
584 622 9.065871 GTTTACTGATGAATTACATTGCAGAAC 57.934 33.333 0.00 0.00 39.56 3.01
589 627 8.058667 TGATGAATTACATTGCAGAACATTCT 57.941 30.769 0.00 0.00 39.56 2.40
590 628 7.971722 TGATGAATTACATTGCAGAACATTCTG 59.028 33.333 15.88 15.88 46.50 3.02
599 637 3.687572 CAGAACATTCTGCATGCTACC 57.312 47.619 20.33 0.00 46.97 3.18
624 662 7.148018 CCATGCTTACATTACAGAGTCCATTTT 60.148 37.037 0.00 0.00 32.87 1.82
628 670 7.414540 GCTTACATTACAGAGTCCATTTTCAGG 60.415 40.741 0.00 0.00 0.00 3.86
652 694 4.822685 TGCATTTTCATACCAAAGCCAT 57.177 36.364 0.00 0.00 0.00 4.40
654 696 4.467082 TGCATTTTCATACCAAAGCCATCT 59.533 37.500 0.00 0.00 0.00 2.90
658 701 4.314522 TTCATACCAAAGCCATCTGGAA 57.685 40.909 0.00 0.00 36.49 3.53
687 730 4.982241 AGAAACTTCCATCCAGAACTCA 57.018 40.909 0.00 0.00 0.00 3.41
698 741 2.818432 TCCAGAACTCACGAGAAGTACC 59.182 50.000 0.00 0.00 0.00 3.34
844 887 2.890474 CGCCCGTGAAGGAATCCG 60.890 66.667 0.00 0.00 45.00 4.18
855 898 1.153628 GGAATCCGTCCAGTCACCG 60.154 63.158 0.00 0.00 46.97 4.94
902 945 6.335471 CATCATGTGCCACCAATACATTAT 57.665 37.500 0.00 0.00 33.06 1.28
907 950 4.037803 TGTGCCACCAATACATTATGCATC 59.962 41.667 0.19 0.00 0.00 3.91
954 997 2.203195 GGCACAGGACTGCACACA 60.203 61.111 0.00 0.00 39.08 3.72
958 1001 0.870393 CACAGGACTGCACACATCAC 59.130 55.000 0.00 0.00 0.00 3.06
968 1011 1.542915 GCACACATCACCAGCAAAGAT 59.457 47.619 0.00 0.00 0.00 2.40
973 1016 4.880120 ACACATCACCAGCAAAGATCATAG 59.120 41.667 0.00 0.00 0.00 2.23
985 1032 7.761704 CAGCAAAGATCATAGTACTAACACAGT 59.238 37.037 6.70 0.00 41.62 3.55
1031 1093 1.566018 CGTCGGGTTCTTCTTGTGGC 61.566 60.000 0.00 0.00 0.00 5.01
1038 1100 0.034756 TTCTTCTTGTGGCGCTGCTA 59.965 50.000 7.64 0.00 0.00 3.49
1197 1283 3.998672 TCGGGTCAGAACGGTGGC 61.999 66.667 0.00 0.00 0.00 5.01
1203 1289 0.667792 GTCAGAACGGTGGCTCTCAC 60.668 60.000 0.00 0.00 45.34 3.51
1275 1361 1.987807 GCTCTGCTAATGGGGGCTCA 61.988 60.000 0.00 0.00 0.00 4.26
1280 1366 0.396278 GCTAATGGGGGCTCAGCTTT 60.396 55.000 0.00 0.00 0.00 3.51
1332 1418 3.254024 TTCGGGTTCTGGCTCTGGC 62.254 63.158 0.00 0.00 37.82 4.85
1356 1442 2.034179 CGTAGGCTTGGACACATCGATA 59.966 50.000 0.00 0.00 0.00 2.92
1375 1461 2.045561 AAATGTCGGTGTTGGTGTCA 57.954 45.000 0.00 0.00 0.00 3.58
1377 1463 0.884704 ATGTCGGTGTTGGTGTCAGC 60.885 55.000 0.00 0.00 0.00 4.26
1451 1537 0.458669 TCGAACTATGGTTCCGGAGC 59.541 55.000 15.47 10.28 46.46 4.70
1471 1563 2.747855 GCTTGGGTTCGGGCTCTG 60.748 66.667 0.00 0.00 0.00 3.35
1472 1564 2.045926 CTTGGGTTCGGGCTCTGG 60.046 66.667 0.00 0.00 0.00 3.86
1473 1565 3.628646 CTTGGGTTCGGGCTCTGGG 62.629 68.421 0.00 0.00 0.00 4.45
1474 1566 4.974438 TGGGTTCGGGCTCTGGGT 62.974 66.667 0.00 0.00 0.00 4.51
1475 1567 4.097361 GGGTTCGGGCTCTGGGTC 62.097 72.222 0.00 0.00 0.00 4.46
1476 1568 4.097361 GGTTCGGGCTCTGGGTCC 62.097 72.222 0.00 0.00 36.08 4.46
1503 1595 2.127708 GGGTCAGGTGGAGGTTCATAT 58.872 52.381 0.00 0.00 0.00 1.78
1504 1596 2.509964 GGGTCAGGTGGAGGTTCATATT 59.490 50.000 0.00 0.00 0.00 1.28
1515 1607 2.170607 AGGTTCATATTCCTCACGTGGG 59.829 50.000 17.00 13.21 0.00 4.61
1545 1637 0.909623 CTGGTATTGGGTCGGGTTCT 59.090 55.000 0.00 0.00 0.00 3.01
1557 1649 0.179119 CGGGTTCTGGTGTATCGTCC 60.179 60.000 0.00 0.00 0.00 4.79
1561 1653 1.324740 TTCTGGTGTATCGTCCGGGG 61.325 60.000 0.00 0.00 0.00 5.73
1562 1654 2.037687 TGGTGTATCGTCCGGGGT 59.962 61.111 0.00 0.00 0.00 4.95
1566 1658 2.202974 GTATCGTCCGGGGTTGGC 60.203 66.667 0.00 0.00 0.00 4.52
1618 1710 1.948611 GCTTATCTTGTGGTTCCGGCA 60.949 52.381 0.00 0.00 0.00 5.69
1619 1711 2.643551 CTTATCTTGTGGTTCCGGCAT 58.356 47.619 0.00 0.00 0.00 4.40
1650 1742 1.541310 TTGGTGGCTCCTCGTCGAAT 61.541 55.000 7.19 0.00 37.07 3.34
1651 1743 1.218316 GGTGGCTCCTCGTCGAATT 59.782 57.895 0.00 0.00 0.00 2.17
1652 1744 0.806492 GGTGGCTCCTCGTCGAATTC 60.806 60.000 0.00 0.00 0.00 2.17
1653 1745 0.108804 GTGGCTCCTCGTCGAATTCA 60.109 55.000 6.22 0.00 0.00 2.57
1654 1746 0.606096 TGGCTCCTCGTCGAATTCAA 59.394 50.000 6.22 0.00 0.00 2.69
1655 1747 1.001520 TGGCTCCTCGTCGAATTCAAA 59.998 47.619 6.22 0.00 0.00 2.69
1669 1761 4.420168 GAATTCAAATTCGAATTCGGGCA 58.580 39.130 26.47 12.22 46.68 5.36
1689 1781 0.671781 CTGGTTCAGGCTCCAACTCG 60.672 60.000 5.96 0.00 33.06 4.18
1695 1787 0.537188 CAGGCTCCAACTCGTATGGT 59.463 55.000 0.00 0.00 39.09 3.55
1704 1796 1.481871 ACTCGTATGGTGGGTCGAAT 58.518 50.000 0.00 0.00 32.12 3.34
1723 1815 4.365723 GAATGCCGGTTCTTACTCGAATA 58.634 43.478 1.90 0.00 0.00 1.75
1727 1819 3.114065 CCGGTTCTTACTCGAATACTGC 58.886 50.000 0.00 0.00 0.00 4.40
1776 1868 2.909006 GGGATATGATTCCTCTGGCTCA 59.091 50.000 0.00 0.00 35.97 4.26
1828 1927 5.354792 TCAGGTTAGTGTTGTGTTTGGTTAC 59.645 40.000 0.00 0.00 0.00 2.50
1876 1979 1.948104 TTTCACGTGTCTCACCAAGG 58.052 50.000 16.51 0.00 0.00 3.61
1881 1984 2.014128 ACGTGTCTCACCAAGGTTTTG 58.986 47.619 0.00 0.00 0.00 2.44
1882 1985 1.268539 CGTGTCTCACCAAGGTTTTGC 60.269 52.381 0.00 0.00 32.79 3.68
1919 2022 2.559698 TCATTTGGTGGATCACGTGT 57.440 45.000 16.51 2.57 34.83 4.49
1971 2074 1.963515 GGTGCAAACTCAGGGTCAAAT 59.036 47.619 0.00 0.00 0.00 2.32
1980 2083 1.144708 TCAGGGTCAAATTCTGGTGCA 59.855 47.619 0.00 0.00 0.00 4.57
1981 2084 1.962807 CAGGGTCAAATTCTGGTGCAA 59.037 47.619 0.00 0.00 0.00 4.08
2016 2119 4.323485 GGTAGTGGATCAAACTCCATGTCA 60.323 45.833 3.73 0.00 46.67 3.58
2017 2120 4.371624 AGTGGATCAAACTCCATGTCAA 57.628 40.909 0.00 0.00 46.67 3.18
2076 2179 0.796312 CAAACTCCATGTCGGGTTCG 59.204 55.000 0.00 0.00 34.36 3.95
2154 2263 3.799755 GGTGCGTTCGGTGCATCC 61.800 66.667 0.00 0.00 45.34 3.51
2179 2288 5.128827 GGTAGTGGATCAAACTCCATGTCTA 59.871 44.000 3.73 0.00 46.67 2.59
2190 2299 3.515901 ACTCCATGTCTAGTTCAGGTTCC 59.484 47.826 0.00 0.00 0.00 3.62
2193 2302 0.606604 TGTCTAGTTCAGGTTCCGGC 59.393 55.000 0.00 0.00 0.00 6.13
2202 2323 2.217038 AGGTTCCGGCTCAAGCTCA 61.217 57.895 0.00 0.00 41.70 4.26
2236 2358 3.851098 AGCTCAGGTTCGATGTTTACTC 58.149 45.455 0.00 0.00 0.00 2.59
2249 2371 5.455849 CGATGTTTACTCCTCGTCATTACTG 59.544 44.000 0.00 0.00 0.00 2.74
2250 2372 5.068234 TGTTTACTCCTCGTCATTACTGG 57.932 43.478 0.00 0.00 0.00 4.00
2252 2377 5.105877 TGTTTACTCCTCGTCATTACTGGAG 60.106 44.000 11.86 11.86 43.64 3.86
2261 2386 6.127814 CCTCGTCATTACTGGAGTACTTTACA 60.128 42.308 0.00 0.00 0.00 2.41
2262 2387 6.849502 TCGTCATTACTGGAGTACTTTACAG 58.150 40.000 16.79 16.79 37.01 2.74
2263 2388 6.034591 CGTCATTACTGGAGTACTTTACAGG 58.965 44.000 20.31 8.46 35.34 4.00
2280 2405 3.609853 ACAGGATTGCACGTTGATATGT 58.390 40.909 0.00 0.00 0.00 2.29
2288 2414 4.657055 TGCACGTTGATATGTAACATTGC 58.343 39.130 12.04 12.04 37.28 3.56
2292 2418 6.082984 CACGTTGATATGTAACATTGCACAA 58.917 36.000 0.00 0.00 0.00 3.33
2293 2419 6.746822 CACGTTGATATGTAACATTGCACAAT 59.253 34.615 0.00 0.00 0.00 2.71
2320 2449 0.535553 TCCTACGTTTGCAACCCCAC 60.536 55.000 0.00 0.00 0.00 4.61
2333 2462 5.501156 TGCAACCCCACAAAAAGTTTTATT 58.499 33.333 0.24 0.00 0.00 1.40
2387 2518 6.174049 GCTTGATTTTTCTACAGGGTCTACT 58.826 40.000 0.00 0.00 0.00 2.57
2393 2524 5.934402 TTTCTACAGGGTCTACTGGATTC 57.066 43.478 0.00 0.00 42.75 2.52
2399 2530 1.138464 GGGTCTACTGGATTCGGTTCC 59.862 57.143 0.00 0.00 36.24 3.62
2579 2710 4.475135 GGCGGAGGAGGAACAGGC 62.475 72.222 0.00 0.00 0.00 4.85
2642 2773 3.854784 GCAAGCACCACTGAAAACTGATC 60.855 47.826 0.00 0.00 0.00 2.92
2646 2777 2.738846 CACCACTGAAAACTGATCCTCG 59.261 50.000 0.00 0.00 0.00 4.63
2657 2788 0.446616 TGATCCTCGTCGAGTGAACG 59.553 55.000 20.37 5.39 0.00 3.95
2680 2811 1.937223 TGATCGTTCACGTGCACTTTT 59.063 42.857 16.14 0.87 40.80 2.27
2681 2812 2.353269 TGATCGTTCACGTGCACTTTTT 59.647 40.909 16.14 0.00 40.80 1.94
2682 2813 3.556365 TGATCGTTCACGTGCACTTTTTA 59.444 39.130 16.14 0.00 40.80 1.52
2691 2822 2.034053 CGTGCACTTTTTAAGGCCTTCA 59.966 45.455 24.49 8.70 0.00 3.02
2734 2866 1.951602 GTTTCTGGTTGGGTGGTGTAC 59.048 52.381 0.00 0.00 0.00 2.90
2746 2878 4.838959 GTGTACGCATGCACCAAC 57.161 55.556 19.57 9.88 35.55 3.77
2747 2879 2.244000 GTGTACGCATGCACCAACT 58.756 52.632 19.57 0.00 35.55 3.16
2748 2880 0.591170 GTGTACGCATGCACCAACTT 59.409 50.000 19.57 0.00 35.55 2.66
2749 2881 0.590682 TGTACGCATGCACCAACTTG 59.409 50.000 19.57 0.50 0.00 3.16
2750 2882 0.591170 GTACGCATGCACCAACTTGT 59.409 50.000 19.57 7.16 0.00 3.16
2751 2883 1.001815 GTACGCATGCACCAACTTGTT 60.002 47.619 19.57 0.00 0.00 2.83
2785 2920 1.529438 GTGGACGAGTTTGCGATTTCA 59.471 47.619 0.00 0.00 34.83 2.69
2786 2921 2.032377 GTGGACGAGTTTGCGATTTCAA 60.032 45.455 0.00 0.00 34.83 2.69
2812 2948 1.672363 TGGATCGTTGCAGAATCATGC 59.328 47.619 7.18 0.00 46.68 4.06
2850 3023 3.975035 GTCATGGAAAAGTTGAGCGAAAC 59.025 43.478 0.00 0.00 0.00 2.78
2927 3100 0.886563 ATTGCTTGAGCTCTTGTGCC 59.113 50.000 16.19 0.00 42.66 5.01
2939 3116 1.911293 CTTGTGCCACGTGATTCCCG 61.911 60.000 19.30 0.00 0.00 5.14
3021 3203 2.875485 CGATGAGACGTCACCGGT 59.125 61.111 19.50 0.00 35.88 5.28
3044 3236 2.505337 TTTCGATCGTCCGTGCCG 60.505 61.111 15.94 0.00 0.00 5.69
3063 3255 2.109126 GCAAGGGCACGGAAGCTAG 61.109 63.158 0.00 0.00 40.72 3.42
3071 3263 4.609995 CGGAAGCTAGCCGGAAAA 57.390 55.556 17.61 0.00 44.87 2.29
3072 3264 2.384203 CGGAAGCTAGCCGGAAAAG 58.616 57.895 17.61 0.00 44.87 2.27
3073 3265 1.090052 CGGAAGCTAGCCGGAAAAGG 61.090 60.000 17.61 0.00 44.87 3.11
3074 3266 0.748367 GGAAGCTAGCCGGAAAAGGG 60.748 60.000 12.13 0.00 0.00 3.95
3081 3273 4.715523 CCGGAAAAGGGCGAGGCA 62.716 66.667 0.00 0.00 0.00 4.75
3082 3274 2.671619 CGGAAAAGGGCGAGGCAA 60.672 61.111 0.00 0.00 0.00 4.52
3083 3275 2.265182 CGGAAAAGGGCGAGGCAAA 61.265 57.895 0.00 0.00 0.00 3.68
3084 3276 1.586541 GGAAAAGGGCGAGGCAAAG 59.413 57.895 0.00 0.00 0.00 2.77
3085 3277 1.586541 GAAAAGGGCGAGGCAAAGG 59.413 57.895 0.00 0.00 0.00 3.11
3086 3278 2.492449 GAAAAGGGCGAGGCAAAGGC 62.492 60.000 0.00 0.00 40.13 4.35
3144 3336 4.783621 GATCTGGGCAGGCACGCA 62.784 66.667 0.00 0.00 0.00 5.24
3204 3402 2.256764 CTCCGGCGATCGATCCTG 59.743 66.667 21.57 15.73 42.43 3.86
3207 3405 2.427575 CGGCGATCGATCCTGACG 60.428 66.667 21.57 16.07 42.43 4.35
3216 3414 4.194720 ATCCTGACGCGCGACTCC 62.195 66.667 39.36 21.36 0.00 3.85
3307 3509 2.584418 CGTATGCGCTGCTCTGCT 60.584 61.111 9.73 0.00 0.00 4.24
3308 3510 2.169789 CGTATGCGCTGCTCTGCTT 61.170 57.895 9.73 0.00 0.00 3.91
3309 3511 1.699656 CGTATGCGCTGCTCTGCTTT 61.700 55.000 9.73 0.00 0.00 3.51
3310 3512 0.449388 GTATGCGCTGCTCTGCTTTT 59.551 50.000 9.73 0.00 0.00 2.27
3311 3513 0.729116 TATGCGCTGCTCTGCTTTTC 59.271 50.000 9.73 0.00 0.00 2.29
3312 3514 0.959372 ATGCGCTGCTCTGCTTTTCT 60.959 50.000 9.73 0.00 0.00 2.52
3313 3515 0.320683 TGCGCTGCTCTGCTTTTCTA 60.321 50.000 9.73 0.00 0.00 2.10
3314 3516 0.798776 GCGCTGCTCTGCTTTTCTAA 59.201 50.000 0.00 0.00 0.00 2.10
3315 3517 1.464854 GCGCTGCTCTGCTTTTCTAAC 60.465 52.381 0.00 0.00 0.00 2.34
3316 3518 1.800586 CGCTGCTCTGCTTTTCTAACA 59.199 47.619 0.00 0.00 0.00 2.41
3317 3519 2.224079 CGCTGCTCTGCTTTTCTAACAA 59.776 45.455 0.00 0.00 0.00 2.83
3318 3520 3.559504 GCTGCTCTGCTTTTCTAACAAC 58.440 45.455 0.00 0.00 0.00 3.32
3319 3521 3.610349 GCTGCTCTGCTTTTCTAACAACC 60.610 47.826 0.00 0.00 0.00 3.77
3320 3522 3.550820 TGCTCTGCTTTTCTAACAACCA 58.449 40.909 0.00 0.00 0.00 3.67
3321 3523 3.315191 TGCTCTGCTTTTCTAACAACCAC 59.685 43.478 0.00 0.00 0.00 4.16
3322 3524 3.565902 GCTCTGCTTTTCTAACAACCACT 59.434 43.478 0.00 0.00 0.00 4.00
3323 3525 4.755123 GCTCTGCTTTTCTAACAACCACTA 59.245 41.667 0.00 0.00 0.00 2.74
3324 3526 5.412904 GCTCTGCTTTTCTAACAACCACTAT 59.587 40.000 0.00 0.00 0.00 2.12
3325 3527 6.072452 GCTCTGCTTTTCTAACAACCACTATT 60.072 38.462 0.00 0.00 0.00 1.73
3326 3528 7.435068 TCTGCTTTTCTAACAACCACTATTC 57.565 36.000 0.00 0.00 0.00 1.75
3327 3529 7.224297 TCTGCTTTTCTAACAACCACTATTCT 58.776 34.615 0.00 0.00 0.00 2.40
3328 3530 7.719633 TCTGCTTTTCTAACAACCACTATTCTT 59.280 33.333 0.00 0.00 0.00 2.52
3329 3531 8.232913 TGCTTTTCTAACAACCACTATTCTTT 57.767 30.769 0.00 0.00 0.00 2.52
3330 3532 8.691797 TGCTTTTCTAACAACCACTATTCTTTT 58.308 29.630 0.00 0.00 0.00 2.27
3331 3533 9.529325 GCTTTTCTAACAACCACTATTCTTTTT 57.471 29.630 0.00 0.00 0.00 1.94
3336 3538 9.179909 TCTAACAACCACTATTCTTTTTGTTCA 57.820 29.630 1.03 0.00 38.02 3.18
3337 3539 9.450807 CTAACAACCACTATTCTTTTTGTTCAG 57.549 33.333 1.03 0.00 38.02 3.02
3338 3540 7.639113 ACAACCACTATTCTTTTTGTTCAGA 57.361 32.000 0.00 0.00 0.00 3.27
3339 3541 8.237811 ACAACCACTATTCTTTTTGTTCAGAT 57.762 30.769 0.00 0.00 0.00 2.90
3340 3542 8.137437 ACAACCACTATTCTTTTTGTTCAGATG 58.863 33.333 0.00 0.00 0.00 2.90
3341 3543 8.352201 CAACCACTATTCTTTTTGTTCAGATGA 58.648 33.333 0.00 0.00 0.00 2.92
3342 3544 8.463930 ACCACTATTCTTTTTGTTCAGATGAA 57.536 30.769 0.00 0.00 0.00 2.57
3343 3545 8.571336 ACCACTATTCTTTTTGTTCAGATGAAG 58.429 33.333 0.00 0.00 34.27 3.02
3344 3546 8.571336 CCACTATTCTTTTTGTTCAGATGAAGT 58.429 33.333 0.00 0.00 34.27 3.01
3345 3547 9.390795 CACTATTCTTTTTGTTCAGATGAAGTG 57.609 33.333 0.00 0.00 34.27 3.16
3346 3548 8.571336 ACTATTCTTTTTGTTCAGATGAAGTGG 58.429 33.333 0.00 0.00 34.27 4.00
3347 3549 7.587037 ATTCTTTTTGTTCAGATGAAGTGGA 57.413 32.000 0.00 0.00 34.27 4.02
3348 3550 6.377327 TCTTTTTGTTCAGATGAAGTGGAC 57.623 37.500 0.00 0.00 34.27 4.02
3349 3551 4.811555 TTTTGTTCAGATGAAGTGGACG 57.188 40.909 0.00 0.00 34.27 4.79
3350 3552 3.469008 TTGTTCAGATGAAGTGGACGT 57.531 42.857 0.00 0.00 34.27 4.34
3351 3553 4.594123 TTGTTCAGATGAAGTGGACGTA 57.406 40.909 0.00 0.00 34.27 3.57
3352 3554 4.801330 TGTTCAGATGAAGTGGACGTAT 57.199 40.909 0.00 0.00 34.27 3.06
3353 3555 5.147330 TGTTCAGATGAAGTGGACGTATT 57.853 39.130 0.00 0.00 34.27 1.89
3354 3556 4.929211 TGTTCAGATGAAGTGGACGTATTG 59.071 41.667 0.00 0.00 34.27 1.90
3355 3557 4.123497 TCAGATGAAGTGGACGTATTGG 57.877 45.455 0.00 0.00 0.00 3.16
3356 3558 3.513912 TCAGATGAAGTGGACGTATTGGT 59.486 43.478 0.00 0.00 0.00 3.67
3357 3559 3.618594 CAGATGAAGTGGACGTATTGGTG 59.381 47.826 0.00 0.00 0.00 4.17
3358 3560 3.260884 AGATGAAGTGGACGTATTGGTGT 59.739 43.478 0.00 0.00 0.00 4.16
3359 3561 4.464951 AGATGAAGTGGACGTATTGGTGTA 59.535 41.667 0.00 0.00 0.00 2.90
3360 3562 4.182693 TGAAGTGGACGTATTGGTGTAG 57.817 45.455 0.00 0.00 0.00 2.74
3361 3563 3.056393 TGAAGTGGACGTATTGGTGTAGG 60.056 47.826 0.00 0.00 0.00 3.18
3362 3564 2.532843 AGTGGACGTATTGGTGTAGGT 58.467 47.619 0.00 0.00 0.00 3.08
3363 3565 3.700538 AGTGGACGTATTGGTGTAGGTA 58.299 45.455 0.00 0.00 0.00 3.08
3364 3566 3.445096 AGTGGACGTATTGGTGTAGGTAC 59.555 47.826 0.00 0.00 0.00 3.34
3365 3567 3.193267 GTGGACGTATTGGTGTAGGTACA 59.807 47.826 0.00 0.00 32.49 2.90
3397 3599 9.971922 TTACTACTCTACTTTTCTAACAACCAC 57.028 33.333 0.00 0.00 0.00 4.16
3398 3600 8.247666 ACTACTCTACTTTTCTAACAACCACT 57.752 34.615 0.00 0.00 0.00 4.00
3399 3601 9.359653 ACTACTCTACTTTTCTAACAACCACTA 57.640 33.333 0.00 0.00 0.00 2.74
3402 3604 9.708092 ACTCTACTTTTCTAACAACCACTATTC 57.292 33.333 0.00 0.00 0.00 1.75
3403 3605 9.930693 CTCTACTTTTCTAACAACCACTATTCT 57.069 33.333 0.00 0.00 0.00 2.40
3412 3614 9.403583 TCTAACAACCACTATTCTTTTTGTTCT 57.596 29.630 1.03 0.00 38.02 3.01
3440 3642 7.867445 AAAACACTATTATGCTTTTGGAACG 57.133 32.000 0.00 0.00 0.00 3.95
3441 3643 5.560966 ACACTATTATGCTTTTGGAACGG 57.439 39.130 0.00 0.00 0.00 4.44
3442 3644 5.250200 ACACTATTATGCTTTTGGAACGGA 58.750 37.500 0.00 0.00 0.00 4.69
3443 3645 5.708230 ACACTATTATGCTTTTGGAACGGAA 59.292 36.000 0.00 0.00 0.00 4.30
3444 3646 6.207810 ACACTATTATGCTTTTGGAACGGAAA 59.792 34.615 0.00 0.00 0.00 3.13
3445 3647 7.093945 ACACTATTATGCTTTTGGAACGGAAAT 60.094 33.333 0.00 0.00 0.00 2.17
3446 3648 7.759433 CACTATTATGCTTTTGGAACGGAAATT 59.241 33.333 0.00 0.00 0.00 1.82
3447 3649 8.311109 ACTATTATGCTTTTGGAACGGAAATTT 58.689 29.630 0.00 0.00 0.00 1.82
3448 3650 7.977789 ATTATGCTTTTGGAACGGAAATTTT 57.022 28.000 0.00 0.00 0.00 1.82
3449 3651 7.793927 TTATGCTTTTGGAACGGAAATTTTT 57.206 28.000 0.00 0.00 0.00 1.94
3450 3652 5.476752 TGCTTTTGGAACGGAAATTTTTG 57.523 34.783 0.00 0.00 0.00 2.44
3451 3653 5.178797 TGCTTTTGGAACGGAAATTTTTGA 58.821 33.333 0.00 0.00 0.00 2.69
3452 3654 5.643777 TGCTTTTGGAACGGAAATTTTTGAA 59.356 32.000 0.00 0.00 0.00 2.69
3453 3655 6.149474 TGCTTTTGGAACGGAAATTTTTGAAA 59.851 30.769 0.00 0.00 0.00 2.69
3454 3656 7.024171 GCTTTTGGAACGGAAATTTTTGAAAA 58.976 30.769 0.00 0.00 0.00 2.29
3455 3657 7.218014 GCTTTTGGAACGGAAATTTTTGAAAAG 59.782 33.333 0.00 0.00 32.42 2.27
3456 3658 7.907214 TTTGGAACGGAAATTTTTGAAAAGA 57.093 28.000 0.00 0.00 0.00 2.52
3457 3659 7.907214 TTGGAACGGAAATTTTTGAAAAGAA 57.093 28.000 0.00 0.00 0.00 2.52
3458 3660 7.907214 TGGAACGGAAATTTTTGAAAAGAAA 57.093 28.000 0.00 0.00 0.00 2.52
3459 3661 8.499403 TGGAACGGAAATTTTTGAAAAGAAAT 57.501 26.923 0.00 0.00 0.00 2.17
3460 3662 8.608317 TGGAACGGAAATTTTTGAAAAGAAATC 58.392 29.630 0.00 0.00 0.00 2.17
3461 3663 8.608317 GGAACGGAAATTTTTGAAAAGAAATCA 58.392 29.630 0.00 0.00 0.00 2.57
3464 3666 9.323985 ACGGAAATTTTTGAAAAGAAATCATCA 57.676 25.926 0.00 0.00 0.00 3.07
3465 3667 9.584839 CGGAAATTTTTGAAAAGAAATCATCAC 57.415 29.630 0.00 0.00 0.00 3.06
3466 3668 9.882996 GGAAATTTTTGAAAAGAAATCATCACC 57.117 29.630 0.00 0.00 0.00 4.02
3469 3671 9.617523 AATTTTTGAAAAGAAATCATCACCAGT 57.382 25.926 0.00 0.00 0.00 4.00
3470 3672 8.422973 TTTTTGAAAAGAAATCATCACCAGTG 57.577 30.769 0.00 0.00 0.00 3.66
3471 3673 5.125100 TGAAAAGAAATCATCACCAGTGC 57.875 39.130 0.00 0.00 0.00 4.40
3472 3674 4.022068 TGAAAAGAAATCATCACCAGTGCC 60.022 41.667 0.00 0.00 0.00 5.01
3473 3675 3.446442 AAGAAATCATCACCAGTGCCT 57.554 42.857 0.00 0.00 0.00 4.75
3474 3676 4.574674 AAGAAATCATCACCAGTGCCTA 57.425 40.909 0.00 0.00 0.00 3.93
3475 3677 4.574674 AGAAATCATCACCAGTGCCTAA 57.425 40.909 0.00 0.00 0.00 2.69
3476 3678 5.121380 AGAAATCATCACCAGTGCCTAAT 57.879 39.130 0.00 0.00 0.00 1.73
3477 3679 6.252599 AGAAATCATCACCAGTGCCTAATA 57.747 37.500 0.00 0.00 0.00 0.98
3478 3680 6.662755 AGAAATCATCACCAGTGCCTAATAA 58.337 36.000 0.00 0.00 0.00 1.40
3479 3681 7.293073 AGAAATCATCACCAGTGCCTAATAAT 58.707 34.615 0.00 0.00 0.00 1.28
3480 3682 8.439971 AGAAATCATCACCAGTGCCTAATAATA 58.560 33.333 0.00 0.00 0.00 0.98
3481 3683 9.236006 GAAATCATCACCAGTGCCTAATAATAT 57.764 33.333 0.00 0.00 0.00 1.28
3482 3684 8.798859 AATCATCACCAGTGCCTAATAATATC 57.201 34.615 0.00 0.00 0.00 1.63
3483 3685 7.559335 TCATCACCAGTGCCTAATAATATCT 57.441 36.000 0.00 0.00 0.00 1.98
3484 3686 7.977818 TCATCACCAGTGCCTAATAATATCTT 58.022 34.615 0.00 0.00 0.00 2.40
3485 3687 7.879677 TCATCACCAGTGCCTAATAATATCTTG 59.120 37.037 0.00 0.00 0.00 3.02
3486 3688 7.373617 TCACCAGTGCCTAATAATATCTTGA 57.626 36.000 0.00 0.00 0.00 3.02
3487 3689 7.977818 TCACCAGTGCCTAATAATATCTTGAT 58.022 34.615 0.00 0.00 0.00 2.57
3488 3690 9.100197 TCACCAGTGCCTAATAATATCTTGATA 57.900 33.333 0.00 0.00 0.00 2.15
3489 3691 9.725019 CACCAGTGCCTAATAATATCTTGATAA 57.275 33.333 0.00 0.00 0.00 1.75
3490 3692 9.726438 ACCAGTGCCTAATAATATCTTGATAAC 57.274 33.333 0.00 0.00 0.00 1.89
3491 3693 9.725019 CCAGTGCCTAATAATATCTTGATAACA 57.275 33.333 0.00 0.00 0.00 2.41
3556 3758 8.846943 ATAAAACATTTTTGGTTGGATTCTCC 57.153 30.769 0.00 0.00 36.96 3.71
3557 3759 4.890158 ACATTTTTGGTTGGATTCTCCC 57.110 40.909 0.00 0.00 35.03 4.30
3558 3760 3.582647 ACATTTTTGGTTGGATTCTCCCC 59.417 43.478 0.00 0.00 35.03 4.81
3559 3761 3.628832 TTTTTGGTTGGATTCTCCCCT 57.371 42.857 0.00 0.00 35.03 4.79
3560 3762 2.899303 TTTGGTTGGATTCTCCCCTC 57.101 50.000 0.00 0.00 35.03 4.30
3561 3763 2.059756 TTGGTTGGATTCTCCCCTCT 57.940 50.000 0.00 0.00 35.03 3.69
3562 3764 1.584724 TGGTTGGATTCTCCCCTCTC 58.415 55.000 0.00 0.00 35.03 3.20
3563 3765 0.840617 GGTTGGATTCTCCCCTCTCC 59.159 60.000 0.00 0.00 35.03 3.71
3564 3766 1.626631 GGTTGGATTCTCCCCTCTCCT 60.627 57.143 0.00 0.00 35.03 3.69
3565 3767 1.765904 GTTGGATTCTCCCCTCTCCTC 59.234 57.143 0.00 0.00 35.03 3.71
3566 3768 0.266152 TGGATTCTCCCCTCTCCTCC 59.734 60.000 0.00 0.00 35.03 4.30
3567 3769 0.472925 GGATTCTCCCCTCTCCTCCC 60.473 65.000 0.00 0.00 0.00 4.30
3568 3770 0.472925 GATTCTCCCCTCTCCTCCCC 60.473 65.000 0.00 0.00 0.00 4.81
3569 3771 1.979389 ATTCTCCCCTCTCCTCCCCC 61.979 65.000 0.00 0.00 0.00 5.40
3585 3787 2.489938 CCCCCTCTTCATGTTCGAAA 57.510 50.000 0.00 0.00 0.00 3.46
3586 3788 3.004752 CCCCCTCTTCATGTTCGAAAT 57.995 47.619 0.00 0.00 0.00 2.17
3587 3789 2.684881 CCCCCTCTTCATGTTCGAAATG 59.315 50.000 0.00 6.70 0.00 2.32
3588 3790 3.609853 CCCCTCTTCATGTTCGAAATGA 58.390 45.455 14.83 14.83 32.24 2.57
3589 3791 4.202441 CCCCTCTTCATGTTCGAAATGAT 58.798 43.478 17.71 2.82 34.14 2.45
3590 3792 4.036027 CCCCTCTTCATGTTCGAAATGATG 59.964 45.833 17.71 18.41 34.14 3.07
3591 3793 4.497006 CCCTCTTCATGTTCGAAATGATGC 60.497 45.833 17.71 0.30 34.14 3.91
3592 3794 4.095334 CCTCTTCATGTTCGAAATGATGCA 59.905 41.667 17.71 5.39 34.14 3.96
3593 3795 5.392272 CCTCTTCATGTTCGAAATGATGCAA 60.392 40.000 17.71 7.53 34.14 4.08
3594 3796 5.393124 TCTTCATGTTCGAAATGATGCAAC 58.607 37.500 17.71 0.00 34.14 4.17
3595 3797 4.095410 TCATGTTCGAAATGATGCAACC 57.905 40.909 14.83 0.00 0.00 3.77
3596 3798 3.505293 TCATGTTCGAAATGATGCAACCA 59.495 39.130 14.83 0.00 0.00 3.67
3597 3799 4.158209 TCATGTTCGAAATGATGCAACCAT 59.842 37.500 14.83 0.00 0.00 3.55
3598 3800 4.517952 TGTTCGAAATGATGCAACCATT 57.482 36.364 0.00 10.73 35.92 3.16
3599 3801 4.880759 TGTTCGAAATGATGCAACCATTT 58.119 34.783 22.45 22.45 44.23 2.32
3600 3802 5.295950 TGTTCGAAATGATGCAACCATTTT 58.704 33.333 22.87 12.40 42.35 1.82
3601 3803 5.757320 TGTTCGAAATGATGCAACCATTTTT 59.243 32.000 22.87 9.94 42.35 1.94
3621 3823 4.788925 TTTTCCCTTGAAGAGAGGAACA 57.211 40.909 0.00 0.00 35.65 3.18
3622 3824 3.771577 TTCCCTTGAAGAGAGGAACAC 57.228 47.619 0.00 0.00 36.33 3.32
3623 3825 2.689658 TCCCTTGAAGAGAGGAACACA 58.310 47.619 0.00 0.00 36.33 3.72
3624 3826 2.634940 TCCCTTGAAGAGAGGAACACAG 59.365 50.000 0.00 0.00 36.33 3.66
3625 3827 2.421619 CCTTGAAGAGAGGAACACAGC 58.578 52.381 0.00 0.00 36.33 4.40
3626 3828 2.038295 CCTTGAAGAGAGGAACACAGCT 59.962 50.000 0.00 0.00 36.33 4.24
3627 3829 3.495806 CCTTGAAGAGAGGAACACAGCTT 60.496 47.826 0.00 0.00 36.33 3.74
3628 3830 3.393089 TGAAGAGAGGAACACAGCTTC 57.607 47.619 0.00 0.00 34.94 3.86
3629 3831 2.968574 TGAAGAGAGGAACACAGCTTCT 59.031 45.455 0.00 0.00 35.21 2.85
3630 3832 4.152647 TGAAGAGAGGAACACAGCTTCTA 58.847 43.478 0.00 0.00 35.21 2.10
3631 3833 4.219507 TGAAGAGAGGAACACAGCTTCTAG 59.780 45.833 0.00 0.00 35.21 2.43
3632 3834 3.773560 AGAGAGGAACACAGCTTCTAGT 58.226 45.455 0.00 0.00 0.00 2.57
3633 3835 4.156477 AGAGAGGAACACAGCTTCTAGTT 58.844 43.478 0.00 0.00 0.00 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.488126 TTCTTTCAACATGCAGTGTAGC 57.512 40.909 0.00 0.00 41.14 3.58
34 35 1.098050 GCCATTCTAACTGCCACTGG 58.902 55.000 0.00 0.00 0.00 4.00
35 36 0.729116 CGCCATTCTAACTGCCACTG 59.271 55.000 0.00 0.00 0.00 3.66
36 37 0.613260 TCGCCATTCTAACTGCCACT 59.387 50.000 0.00 0.00 0.00 4.00
37 38 1.668419 ATCGCCATTCTAACTGCCAC 58.332 50.000 0.00 0.00 0.00 5.01
38 39 2.418368 AATCGCCATTCTAACTGCCA 57.582 45.000 0.00 0.00 0.00 4.92
39 40 2.223572 CCAAATCGCCATTCTAACTGCC 60.224 50.000 0.00 0.00 0.00 4.85
40 41 2.423538 ACCAAATCGCCATTCTAACTGC 59.576 45.455 0.00 0.00 0.00 4.40
41 42 4.634004 TGTACCAAATCGCCATTCTAACTG 59.366 41.667 0.00 0.00 0.00 3.16
42 43 4.839121 TGTACCAAATCGCCATTCTAACT 58.161 39.130 0.00 0.00 0.00 2.24
43 44 4.035208 CCTGTACCAAATCGCCATTCTAAC 59.965 45.833 0.00 0.00 0.00 2.34
44 45 4.080807 TCCTGTACCAAATCGCCATTCTAA 60.081 41.667 0.00 0.00 0.00 2.10
45 46 3.452990 TCCTGTACCAAATCGCCATTCTA 59.547 43.478 0.00 0.00 0.00 2.10
46 47 2.238646 TCCTGTACCAAATCGCCATTCT 59.761 45.455 0.00 0.00 0.00 2.40
47 48 2.614057 CTCCTGTACCAAATCGCCATTC 59.386 50.000 0.00 0.00 0.00 2.67
48 49 2.026262 ACTCCTGTACCAAATCGCCATT 60.026 45.455 0.00 0.00 0.00 3.16
49 50 1.559682 ACTCCTGTACCAAATCGCCAT 59.440 47.619 0.00 0.00 0.00 4.40
50 51 0.981183 ACTCCTGTACCAAATCGCCA 59.019 50.000 0.00 0.00 0.00 5.69
51 52 1.338769 ACACTCCTGTACCAAATCGCC 60.339 52.381 0.00 0.00 0.00 5.54
52 53 2.094762 ACACTCCTGTACCAAATCGC 57.905 50.000 0.00 0.00 0.00 4.58
53 54 4.713824 TCTACACTCCTGTACCAAATCG 57.286 45.455 0.00 0.00 0.00 3.34
54 55 6.640518 TCATTCTACACTCCTGTACCAAATC 58.359 40.000 0.00 0.00 0.00 2.17
55 56 6.620877 TCATTCTACACTCCTGTACCAAAT 57.379 37.500 0.00 0.00 0.00 2.32
56 57 6.620877 ATCATTCTACACTCCTGTACCAAA 57.379 37.500 0.00 0.00 0.00 3.28
57 58 6.620877 AATCATTCTACACTCCTGTACCAA 57.379 37.500 0.00 0.00 0.00 3.67
58 59 6.895756 ACTAATCATTCTACACTCCTGTACCA 59.104 38.462 0.00 0.00 0.00 3.25
59 60 7.349412 ACTAATCATTCTACACTCCTGTACC 57.651 40.000 0.00 0.00 0.00 3.34
76 77 9.170890 ACTCCTTCCCATGAATAATACTAATCA 57.829 33.333 0.00 0.00 0.00 2.57
77 78 9.442047 CACTCCTTCCCATGAATAATACTAATC 57.558 37.037 0.00 0.00 0.00 1.75
78 79 8.949421 ACACTCCTTCCCATGAATAATACTAAT 58.051 33.333 0.00 0.00 0.00 1.73
79 80 8.331931 ACACTCCTTCCCATGAATAATACTAA 57.668 34.615 0.00 0.00 0.00 2.24
80 81 7.931015 ACACTCCTTCCCATGAATAATACTA 57.069 36.000 0.00 0.00 0.00 1.82
81 82 6.831664 ACACTCCTTCCCATGAATAATACT 57.168 37.500 0.00 0.00 0.00 2.12
82 83 7.963532 TCTACACTCCTTCCCATGAATAATAC 58.036 38.462 0.00 0.00 0.00 1.89
83 84 8.429641 GTTCTACACTCCTTCCCATGAATAATA 58.570 37.037 0.00 0.00 0.00 0.98
84 85 7.283329 GTTCTACACTCCTTCCCATGAATAAT 58.717 38.462 0.00 0.00 0.00 1.28
85 86 6.629515 CGTTCTACACTCCTTCCCATGAATAA 60.630 42.308 0.00 0.00 0.00 1.40
86 87 5.163447 CGTTCTACACTCCTTCCCATGAATA 60.163 44.000 0.00 0.00 0.00 1.75
87 88 4.383118 CGTTCTACACTCCTTCCCATGAAT 60.383 45.833 0.00 0.00 0.00 2.57
88 89 3.056107 CGTTCTACACTCCTTCCCATGAA 60.056 47.826 0.00 0.00 0.00 2.57
89 90 2.496070 CGTTCTACACTCCTTCCCATGA 59.504 50.000 0.00 0.00 0.00 3.07
90 91 2.496070 TCGTTCTACACTCCTTCCCATG 59.504 50.000 0.00 0.00 0.00 3.66
91 92 2.816411 TCGTTCTACACTCCTTCCCAT 58.184 47.619 0.00 0.00 0.00 4.00
92 93 2.297698 TCGTTCTACACTCCTTCCCA 57.702 50.000 0.00 0.00 0.00 4.37
93 94 3.447944 AGAATCGTTCTACACTCCTTCCC 59.552 47.826 0.00 0.00 38.49 3.97
94 95 4.082136 ACAGAATCGTTCTACACTCCTTCC 60.082 45.833 0.87 0.00 38.11 3.46
95 96 4.859798 CACAGAATCGTTCTACACTCCTTC 59.140 45.833 0.87 0.00 38.11 3.46
96 97 4.322049 CCACAGAATCGTTCTACACTCCTT 60.322 45.833 0.87 0.00 38.11 3.36
97 98 3.193691 CCACAGAATCGTTCTACACTCCT 59.806 47.826 0.87 0.00 38.11 3.69
98 99 3.512680 CCACAGAATCGTTCTACACTCC 58.487 50.000 0.87 0.00 38.11 3.85
99 100 3.512680 CCCACAGAATCGTTCTACACTC 58.487 50.000 0.87 0.00 38.11 3.51
100 101 2.353803 GCCCACAGAATCGTTCTACACT 60.354 50.000 0.87 0.00 38.11 3.55
101 102 2.000447 GCCCACAGAATCGTTCTACAC 59.000 52.381 0.87 0.00 38.11 2.90
102 103 1.403647 CGCCCACAGAATCGTTCTACA 60.404 52.381 0.87 0.00 38.11 2.74
103 104 1.278238 CGCCCACAGAATCGTTCTAC 58.722 55.000 0.87 0.00 38.11 2.59
180 186 2.060326 CGCTAACGTGGAGTTCTTGA 57.940 50.000 0.00 0.00 43.06 3.02
229 235 2.974692 AAGGTGCACCGCATGGAACA 62.975 55.000 29.68 0.00 39.26 3.18
249 255 1.694696 GGCTGGGATTCTGTAGTAGGG 59.305 57.143 0.00 0.00 0.00 3.53
287 293 8.983702 ACCTTAACGGGCTAATAAAAATGATA 57.016 30.769 0.00 0.00 36.97 2.15
290 296 6.689669 CGAACCTTAACGGGCTAATAAAAATG 59.310 38.462 0.00 0.00 36.97 2.32
293 299 4.635324 CCGAACCTTAACGGGCTAATAAAA 59.365 41.667 0.00 0.00 44.59 1.52
297 303 2.320745 CCGAACCTTAACGGGCTAAT 57.679 50.000 0.00 0.00 44.59 1.73
304 310 1.196127 GCAAACCTCCGAACCTTAACG 59.804 52.381 0.00 0.00 0.00 3.18
310 316 2.668550 AGCGCAAACCTCCGAACC 60.669 61.111 11.47 0.00 0.00 3.62
321 327 3.005472 ACAGTAGTTAAGAGTGAGCGCAA 59.995 43.478 11.47 0.00 0.00 4.85
323 329 3.172824 GACAGTAGTTAAGAGTGAGCGC 58.827 50.000 0.00 0.00 0.00 5.92
325 331 6.217294 ACTTTGACAGTAGTTAAGAGTGAGC 58.783 40.000 0.00 0.00 31.97 4.26
384 394 6.205464 TCGAGCAAAAAGTTTTCATCTGATCT 59.795 34.615 11.93 0.00 0.00 2.75
386 396 6.317789 TCGAGCAAAAAGTTTTCATCTGAT 57.682 33.333 0.32 0.00 0.00 2.90
412 422 7.444792 AGTTTGCATCTCATATGAAGAATCTCC 59.555 37.037 6.90 0.00 0.00 3.71
414 424 9.491675 CTAGTTTGCATCTCATATGAAGAATCT 57.508 33.333 6.90 3.28 0.00 2.40
424 436 6.737720 AGTGGATCTAGTTTGCATCTCATA 57.262 37.500 0.00 0.00 0.00 2.15
443 455 7.504924 TTGTAACATCTAACAAAGGAAGTGG 57.495 36.000 0.00 0.00 32.86 4.00
467 479 6.011122 AGAAGCTGGAATGGAGTTATCAAT 57.989 37.500 0.00 0.00 0.00 2.57
502 521 4.743493 TCAAAACAAAACTGAGCTCCAAC 58.257 39.130 12.15 0.00 0.00 3.77
541 579 7.702386 TCAGTAAACATATTGTAAATGCGCAT 58.298 30.769 19.28 19.28 0.00 4.73
559 597 8.791675 TGTTCTGCAATGTAATTCATCAGTAAA 58.208 29.630 0.00 0.00 31.22 2.01
599 637 6.932356 AATGGACTCTGTAATGTAAGCATG 57.068 37.500 0.00 0.00 35.15 4.06
607 645 5.500234 TCCCTGAAAATGGACTCTGTAATG 58.500 41.667 0.00 0.00 0.00 1.90
608 646 5.779241 TCCCTGAAAATGGACTCTGTAAT 57.221 39.130 0.00 0.00 0.00 1.89
609 647 5.500234 CATCCCTGAAAATGGACTCTGTAA 58.500 41.667 0.00 0.00 32.36 2.41
624 662 4.248174 TGGTATGAAAATGCATCCCTGA 57.752 40.909 0.00 0.00 0.00 3.86
628 670 4.122046 GGCTTTGGTATGAAAATGCATCC 58.878 43.478 0.00 0.00 0.00 3.51
652 694 4.283722 GGAAGTTTCTAGACTGGTTCCAGA 59.716 45.833 23.45 2.59 37.49 3.86
654 696 3.971305 TGGAAGTTTCTAGACTGGTTCCA 59.029 43.478 16.03 16.03 33.71 3.53
658 701 4.168101 TGGATGGAAGTTTCTAGACTGGT 58.832 43.478 0.00 0.00 0.00 4.00
698 741 9.489084 TTGCCAGTTTGCTAATACTATATACTG 57.511 33.333 0.00 0.00 0.00 2.74
844 887 3.103911 CGCGAACGGTGACTGGAC 61.104 66.667 0.00 0.00 34.97 4.02
855 898 0.110373 CTGTAAAAGGTGGCGCGAAC 60.110 55.000 12.10 7.13 0.00 3.95
954 997 6.491714 AGTACTATGATCTTTGCTGGTGAT 57.508 37.500 0.00 0.00 0.00 3.06
958 1001 7.041721 TGTGTTAGTACTATGATCTTTGCTGG 58.958 38.462 2.79 0.00 0.00 4.85
968 1011 7.696992 TGATGTGACTGTGTTAGTACTATGA 57.303 36.000 2.79 0.00 40.53 2.15
973 1016 5.220228 GCGATTGATGTGACTGTGTTAGTAC 60.220 44.000 0.00 0.00 40.53 2.73
985 1032 0.740149 GCCATTGGCGATTGATGTGA 59.260 50.000 12.82 0.00 39.62 3.58
1019 1081 0.034756 TAGCAGCGCCACAAGAAGAA 59.965 50.000 2.29 0.00 0.00 2.52
1031 1093 1.020861 TGCCATTGACACTAGCAGCG 61.021 55.000 0.00 0.00 0.00 5.18
1038 1100 0.892358 CACCTGCTGCCATTGACACT 60.892 55.000 0.00 0.00 0.00 3.55
1197 1283 4.778415 CCGGACGCGGTGTGAGAG 62.778 72.222 12.47 0.00 0.00 3.20
1254 1340 2.517919 CCCCCATTAGCAGAGCCC 59.482 66.667 0.00 0.00 0.00 5.19
1275 1361 2.604174 CGAACCGCAACCGAAAGCT 61.604 57.895 0.00 0.00 36.29 3.74
1280 1366 3.301554 TACCCGAACCGCAACCGA 61.302 61.111 0.00 0.00 36.29 4.69
1332 1418 0.537188 ATGTGTCCAAGCCTACGGAG 59.463 55.000 0.00 0.00 29.98 4.63
1356 1442 1.946768 CTGACACCAACACCGACATTT 59.053 47.619 0.00 0.00 0.00 2.32
1377 1463 2.885644 CCACCATTCGAGCCGACG 60.886 66.667 0.00 0.00 34.89 5.12
1410 1496 0.109132 CGGTACCCGTGTTACAGTCC 60.109 60.000 6.25 0.00 42.73 3.85
1457 1543 4.974438 ACCCAGAGCCCGAACCCA 62.974 66.667 0.00 0.00 0.00 4.51
1511 1603 1.448540 CCAGATGACTCACGCCCAC 60.449 63.158 0.00 0.00 0.00 4.61
1515 1607 2.205074 CCAATACCAGATGACTCACGC 58.795 52.381 0.00 0.00 0.00 5.34
1545 1637 1.610086 AACCCCGGACGATACACCA 60.610 57.895 0.73 0.00 0.00 4.17
1601 1693 2.364632 CAATGCCGGAACCACAAGATA 58.635 47.619 5.05 0.00 0.00 1.98
1618 1710 1.118838 CCACCAACAACACCACCAAT 58.881 50.000 0.00 0.00 0.00 3.16
1619 1711 1.608717 GCCACCAACAACACCACCAA 61.609 55.000 0.00 0.00 0.00 3.67
1650 1742 2.817258 AGTGCCCGAATTCGAATTTGAA 59.183 40.909 31.21 17.59 43.02 2.69
1651 1743 2.161410 CAGTGCCCGAATTCGAATTTGA 59.839 45.455 31.21 14.68 43.02 2.69
1652 1744 2.518949 CAGTGCCCGAATTCGAATTTG 58.481 47.619 28.76 25.31 43.02 2.32
1653 1745 1.472480 CCAGTGCCCGAATTCGAATTT 59.528 47.619 28.76 8.50 43.02 1.82
1654 1746 1.094785 CCAGTGCCCGAATTCGAATT 58.905 50.000 28.76 22.93 43.02 2.17
1655 1747 0.035439 ACCAGTGCCCGAATTCGAAT 60.035 50.000 28.76 4.39 43.02 3.34
1669 1761 0.398318 GAGTTGGAGCCTGAACCAGT 59.602 55.000 0.00 0.00 37.48 4.00
1689 1781 1.157870 CGGCATTCGACCCACCATAC 61.158 60.000 0.00 0.00 42.43 2.39
1695 1787 2.046700 GAACCGGCATTCGACCCA 60.047 61.111 0.00 0.00 42.43 4.51
1704 1796 2.756760 AGTATTCGAGTAAGAACCGGCA 59.243 45.455 0.00 0.00 32.39 5.69
1727 1819 3.965539 CTTGAGCCGGACCCAGCTG 62.966 68.421 5.05 6.78 40.11 4.24
1776 1868 2.982488 AGATGAACCTGAACCTGAACCT 59.018 45.455 0.00 0.00 0.00 3.50
1828 1927 4.201532 CGTGAATGTTAGCAACGAGAAGAG 60.202 45.833 0.00 0.00 0.00 2.85
1860 1961 1.663695 AAACCTTGGTGAGACACGTG 58.336 50.000 15.48 15.48 34.83 4.49
1861 1962 2.014128 CAAAACCTTGGTGAGACACGT 58.986 47.619 0.00 0.00 34.83 4.49
1862 1963 1.268539 GCAAAACCTTGGTGAGACACG 60.269 52.381 0.00 0.00 34.83 4.49
1863 1964 1.268539 CGCAAAACCTTGGTGAGACAC 60.269 52.381 0.00 0.00 32.76 3.67
1864 1965 1.021202 CGCAAAACCTTGGTGAGACA 58.979 50.000 0.00 0.00 32.76 3.41
1865 1966 1.021968 ACGCAAAACCTTGGTGAGAC 58.978 50.000 0.00 0.00 32.76 3.36
1866 1967 1.021202 CACGCAAAACCTTGGTGAGA 58.979 50.000 0.00 0.00 36.56 3.27
1876 1979 0.317020 GCACCTGAGACACGCAAAAC 60.317 55.000 0.00 0.00 0.00 2.43
1882 1985 3.865929 AAGCCGCACCTGAGACACG 62.866 63.158 0.00 0.00 0.00 4.49
1919 2022 2.833794 CAGAGTTGGAGTTTGAACCGA 58.166 47.619 0.00 0.00 0.00 4.69
1980 2083 1.134401 CCACTACCTGATGCACCGATT 60.134 52.381 0.00 0.00 0.00 3.34
1981 2084 0.465705 CCACTACCTGATGCACCGAT 59.534 55.000 0.00 0.00 0.00 4.18
2016 2119 2.542907 CGCACCCGAGTTTGCACTT 61.543 57.895 0.00 0.00 38.76 3.16
2017 2120 2.972505 CGCACCCGAGTTTGCACT 60.973 61.111 0.00 0.00 38.76 4.40
2076 2179 0.175989 CGGAGTTAGAGCTTGACCCC 59.824 60.000 0.00 0.00 0.00 4.95
2179 2288 0.035458 CTTGAGCCGGAACCTGAACT 59.965 55.000 5.05 0.00 0.00 3.01
2190 2299 2.178890 GGATGCTGAGCTTGAGCCG 61.179 63.158 5.83 0.00 43.38 5.52
2193 2302 0.175302 AGTCGGATGCTGAGCTTGAG 59.825 55.000 5.83 0.00 0.00 3.02
2202 2323 1.723608 CTGAGCTCGAGTCGGATGCT 61.724 60.000 21.68 21.68 36.63 3.79
2229 2350 5.320549 TCCAGTAATGACGAGGAGTAAAC 57.679 43.478 0.00 0.00 32.80 2.01
2236 2358 4.985538 AAGTACTCCAGTAATGACGAGG 57.014 45.455 0.00 0.00 31.52 4.63
2249 2371 3.617263 CGTGCAATCCTGTAAAGTACTCC 59.383 47.826 0.00 0.00 0.00 3.85
2250 2372 4.243270 ACGTGCAATCCTGTAAAGTACTC 58.757 43.478 0.00 0.00 0.00 2.59
2252 2377 4.449743 TCAACGTGCAATCCTGTAAAGTAC 59.550 41.667 0.00 0.00 0.00 2.73
2261 2386 5.182487 TGTTACATATCAACGTGCAATCCT 58.818 37.500 0.00 0.00 0.00 3.24
2262 2387 5.478233 TGTTACATATCAACGTGCAATCC 57.522 39.130 0.00 0.00 0.00 3.01
2263 2388 6.075415 GCAATGTTACATATCAACGTGCAATC 60.075 38.462 10.01 0.00 38.46 2.67
2288 2414 6.021596 GCAAACGTAGGATTAGAACATTGTG 58.978 40.000 0.00 0.00 0.00 3.33
2292 2418 6.178239 GTTGCAAACGTAGGATTAGAACAT 57.822 37.500 0.00 0.00 36.92 2.71
2293 2419 5.600908 GTTGCAAACGTAGGATTAGAACA 57.399 39.130 0.00 0.00 36.92 3.18
2320 2449 8.260433 GCAGTTGCAATGAATAAAACTTTTTG 57.740 30.769 0.59 0.00 41.59 2.44
2459 2590 2.279784 GCTCCGGAGAATGAGCCG 60.280 66.667 35.69 6.40 46.80 5.52
2465 2596 0.105246 AGGATCCTGCTCCGGAGAAT 60.105 55.000 35.69 20.35 40.46 2.40
2646 2777 1.525596 CGATCACTCGTTCACTCGAC 58.474 55.000 0.00 0.00 40.07 4.20
2669 2800 1.687563 AGGCCTTAAAAAGTGCACGT 58.312 45.000 12.01 5.01 0.00 4.49
2675 2806 3.057526 GCGTGATGAAGGCCTTAAAAAGT 60.058 43.478 20.54 0.00 33.42 2.66
2680 2811 0.036765 ACGCGTGATGAAGGCCTTAA 60.037 50.000 20.54 12.74 36.27 1.85
2681 2812 0.739462 CACGCGTGATGAAGGCCTTA 60.739 55.000 34.93 7.57 36.27 2.69
2682 2813 2.034879 CACGCGTGATGAAGGCCTT 61.035 57.895 34.93 20.65 36.27 4.35
2710 2841 1.828595 ACCACCCAACCAGAAACAAAC 59.171 47.619 0.00 0.00 0.00 2.93
2734 2866 2.414058 TAAACAAGTTGGTGCATGCG 57.586 45.000 14.09 0.00 0.00 4.73
2745 2877 5.984926 TCCACGAGACGTAAAATAAACAAGT 59.015 36.000 0.00 0.00 38.32 3.16
2746 2878 6.294363 GTCCACGAGACGTAAAATAAACAAG 58.706 40.000 0.00 0.00 38.32 3.16
2747 2879 6.214205 GTCCACGAGACGTAAAATAAACAA 57.786 37.500 0.00 0.00 38.32 2.83
2748 2880 5.827568 GTCCACGAGACGTAAAATAAACA 57.172 39.130 0.00 0.00 38.32 2.83
2812 2948 4.035091 TCCATGACTTGTTCTTCACAAACG 59.965 41.667 0.00 0.00 45.11 3.60
2818 2954 6.376864 TCAACTTTTCCATGACTTGTTCTTCA 59.623 34.615 0.00 0.00 0.00 3.02
2850 3023 1.006102 AACGTGACTTGCCGAGGAG 60.006 57.895 0.00 0.00 0.00 3.69
2995 3172 1.143838 CGTCTCATCGGCCCATTCA 59.856 57.895 0.00 0.00 0.00 2.57
3021 3203 1.016627 ACGGACGATCGAAACGGATA 58.983 50.000 24.34 0.00 34.93 2.59
3044 3236 3.622060 TAGCTTCCGTGCCCTTGCC 62.622 63.158 0.00 0.00 36.33 4.52
3048 3240 3.787001 GGCTAGCTTCCGTGCCCT 61.787 66.667 15.72 0.00 39.49 5.19
3066 3258 1.586541 CTTTGCCTCGCCCTTTTCC 59.413 57.895 0.00 0.00 0.00 3.13
3067 3259 1.586541 CCTTTGCCTCGCCCTTTTC 59.413 57.895 0.00 0.00 0.00 2.29
3068 3260 2.574018 GCCTTTGCCTCGCCCTTTT 61.574 57.895 0.00 0.00 0.00 2.27
3069 3261 2.991540 GCCTTTGCCTCGCCCTTT 60.992 61.111 0.00 0.00 0.00 3.11
3115 3307 4.899239 CAGATCGGGGAGCGGTGC 62.899 72.222 0.00 0.00 0.00 5.01
3116 3308 4.227134 CCAGATCGGGGAGCGGTG 62.227 72.222 3.59 0.00 0.00 4.94
3127 3319 4.783621 TGCGTGCCTGCCCAGATC 62.784 66.667 0.00 0.00 0.00 2.75
3187 3381 2.256764 CAGGATCGATCGCCGGAG 59.743 66.667 18.81 0.00 39.14 4.63
3265 3463 1.354337 CTCCATGTGCTCCACGAACG 61.354 60.000 0.00 0.00 37.14 3.95
3267 3465 1.375908 GCTCCATGTGCTCCACGAA 60.376 57.895 0.00 0.00 37.14 3.85
3310 3512 9.179909 TGAACAAAAAGAATAGTGGTTGTTAGA 57.820 29.630 0.00 0.00 38.82 2.10
3311 3513 9.450807 CTGAACAAAAAGAATAGTGGTTGTTAG 57.549 33.333 0.00 0.00 38.82 2.34
3312 3514 9.179909 TCTGAACAAAAAGAATAGTGGTTGTTA 57.820 29.630 0.00 0.00 38.82 2.41
3313 3515 8.062065 TCTGAACAAAAAGAATAGTGGTTGTT 57.938 30.769 0.00 0.00 40.76 2.83
3314 3516 7.639113 TCTGAACAAAAAGAATAGTGGTTGT 57.361 32.000 0.00 0.00 0.00 3.32
3315 3517 8.352201 TCATCTGAACAAAAAGAATAGTGGTTG 58.648 33.333 0.00 0.00 0.00 3.77
3316 3518 8.463930 TCATCTGAACAAAAAGAATAGTGGTT 57.536 30.769 0.00 0.00 0.00 3.67
3317 3519 8.463930 TTCATCTGAACAAAAAGAATAGTGGT 57.536 30.769 0.00 0.00 0.00 4.16
3318 3520 8.571336 ACTTCATCTGAACAAAAAGAATAGTGG 58.429 33.333 0.00 0.00 0.00 4.00
3319 3521 9.390795 CACTTCATCTGAACAAAAAGAATAGTG 57.609 33.333 0.00 0.00 0.00 2.74
3320 3522 8.571336 CCACTTCATCTGAACAAAAAGAATAGT 58.429 33.333 0.00 0.00 0.00 2.12
3321 3523 8.786898 TCCACTTCATCTGAACAAAAAGAATAG 58.213 33.333 0.00 0.00 0.00 1.73
3322 3524 8.567948 GTCCACTTCATCTGAACAAAAAGAATA 58.432 33.333 0.00 0.00 0.00 1.75
3323 3525 7.428826 GTCCACTTCATCTGAACAAAAAGAAT 58.571 34.615 0.00 0.00 0.00 2.40
3324 3526 6.458206 CGTCCACTTCATCTGAACAAAAAGAA 60.458 38.462 0.00 0.00 0.00 2.52
3325 3527 5.007626 CGTCCACTTCATCTGAACAAAAAGA 59.992 40.000 0.00 0.00 0.00 2.52
3326 3528 5.207768 CGTCCACTTCATCTGAACAAAAAG 58.792 41.667 0.00 0.00 0.00 2.27
3327 3529 4.638421 ACGTCCACTTCATCTGAACAAAAA 59.362 37.500 0.00 0.00 0.00 1.94
3328 3530 4.196193 ACGTCCACTTCATCTGAACAAAA 58.804 39.130 0.00 0.00 0.00 2.44
3329 3531 3.804036 ACGTCCACTTCATCTGAACAAA 58.196 40.909 0.00 0.00 0.00 2.83
3330 3532 3.469008 ACGTCCACTTCATCTGAACAA 57.531 42.857 0.00 0.00 0.00 2.83
3331 3533 4.801330 ATACGTCCACTTCATCTGAACA 57.199 40.909 0.00 0.00 0.00 3.18
3332 3534 4.330074 CCAATACGTCCACTTCATCTGAAC 59.670 45.833 0.00 0.00 0.00 3.18
3333 3535 4.020573 ACCAATACGTCCACTTCATCTGAA 60.021 41.667 0.00 0.00 0.00 3.02
3334 3536 3.513912 ACCAATACGTCCACTTCATCTGA 59.486 43.478 0.00 0.00 0.00 3.27
3335 3537 3.618594 CACCAATACGTCCACTTCATCTG 59.381 47.826 0.00 0.00 0.00 2.90
3336 3538 3.260884 ACACCAATACGTCCACTTCATCT 59.739 43.478 0.00 0.00 0.00 2.90
3337 3539 3.596214 ACACCAATACGTCCACTTCATC 58.404 45.455 0.00 0.00 0.00 2.92
3338 3540 3.695830 ACACCAATACGTCCACTTCAT 57.304 42.857 0.00 0.00 0.00 2.57
3339 3541 3.056393 CCTACACCAATACGTCCACTTCA 60.056 47.826 0.00 0.00 0.00 3.02
3340 3542 3.056322 ACCTACACCAATACGTCCACTTC 60.056 47.826 0.00 0.00 0.00 3.01
3341 3543 2.901839 ACCTACACCAATACGTCCACTT 59.098 45.455 0.00 0.00 0.00 3.16
3342 3544 2.532843 ACCTACACCAATACGTCCACT 58.467 47.619 0.00 0.00 0.00 4.00
3343 3545 3.193267 TGTACCTACACCAATACGTCCAC 59.807 47.826 0.00 0.00 0.00 4.02
3344 3546 3.429492 TGTACCTACACCAATACGTCCA 58.571 45.455 0.00 0.00 0.00 4.02
3371 3573 9.971922 GTGGTTGTTAGAAAAGTAGAGTAGTAA 57.028 33.333 0.00 0.00 0.00 2.24
3372 3574 9.359653 AGTGGTTGTTAGAAAAGTAGAGTAGTA 57.640 33.333 0.00 0.00 0.00 1.82
3373 3575 8.247666 AGTGGTTGTTAGAAAAGTAGAGTAGT 57.752 34.615 0.00 0.00 0.00 2.73
3376 3578 9.708092 GAATAGTGGTTGTTAGAAAAGTAGAGT 57.292 33.333 0.00 0.00 0.00 3.24
3377 3579 9.930693 AGAATAGTGGTTGTTAGAAAAGTAGAG 57.069 33.333 0.00 0.00 0.00 2.43
3386 3588 9.403583 AGAACAAAAAGAATAGTGGTTGTTAGA 57.596 29.630 0.00 0.00 38.82 2.10
3415 3617 7.383843 CCGTTCCAAAAGCATAATAGTGTTTTT 59.616 33.333 0.00 0.00 41.26 1.94
3416 3618 6.866248 CCGTTCCAAAAGCATAATAGTGTTTT 59.134 34.615 0.00 0.00 34.59 2.43
3417 3619 6.207810 TCCGTTCCAAAAGCATAATAGTGTTT 59.792 34.615 0.00 0.00 0.00 2.83
3418 3620 5.708230 TCCGTTCCAAAAGCATAATAGTGTT 59.292 36.000 0.00 0.00 0.00 3.32
3419 3621 5.250200 TCCGTTCCAAAAGCATAATAGTGT 58.750 37.500 0.00 0.00 0.00 3.55
3420 3622 5.811399 TCCGTTCCAAAAGCATAATAGTG 57.189 39.130 0.00 0.00 0.00 2.74
3421 3623 6.827586 TTTCCGTTCCAAAAGCATAATAGT 57.172 33.333 0.00 0.00 0.00 2.12
3422 3624 8.702163 AAATTTCCGTTCCAAAAGCATAATAG 57.298 30.769 0.00 0.00 0.00 1.73
3423 3625 9.495572 AAAAATTTCCGTTCCAAAAGCATAATA 57.504 25.926 0.00 0.00 0.00 0.98
3424 3626 7.977789 AAAATTTCCGTTCCAAAAGCATAAT 57.022 28.000 0.00 0.00 0.00 1.28
3425 3627 7.495934 TCAAAAATTTCCGTTCCAAAAGCATAA 59.504 29.630 0.00 0.00 0.00 1.90
3426 3628 6.986817 TCAAAAATTTCCGTTCCAAAAGCATA 59.013 30.769 0.00 0.00 0.00 3.14
3427 3629 5.819901 TCAAAAATTTCCGTTCCAAAAGCAT 59.180 32.000 0.00 0.00 0.00 3.79
3428 3630 5.178797 TCAAAAATTTCCGTTCCAAAAGCA 58.821 33.333 0.00 0.00 0.00 3.91
3429 3631 5.726729 TCAAAAATTTCCGTTCCAAAAGC 57.273 34.783 0.00 0.00 0.00 3.51
3430 3632 8.447053 TCTTTTCAAAAATTTCCGTTCCAAAAG 58.553 29.630 0.00 1.07 0.00 2.27
3431 3633 8.324163 TCTTTTCAAAAATTTCCGTTCCAAAA 57.676 26.923 0.00 0.00 0.00 2.44
3432 3634 7.907214 TCTTTTCAAAAATTTCCGTTCCAAA 57.093 28.000 0.00 0.00 0.00 3.28
3433 3635 7.907214 TTCTTTTCAAAAATTTCCGTTCCAA 57.093 28.000 0.00 0.00 0.00 3.53
3434 3636 7.907214 TTTCTTTTCAAAAATTTCCGTTCCA 57.093 28.000 0.00 0.00 0.00 3.53
3435 3637 8.608317 TGATTTCTTTTCAAAAATTTCCGTTCC 58.392 29.630 0.00 0.00 0.00 3.62
3438 3640 9.323985 TGATGATTTCTTTTCAAAAATTTCCGT 57.676 25.926 0.00 0.00 0.00 4.69
3439 3641 9.584839 GTGATGATTTCTTTTCAAAAATTTCCG 57.415 29.630 0.00 0.00 0.00 4.30
3440 3642 9.882996 GGTGATGATTTCTTTTCAAAAATTTCC 57.117 29.630 0.00 0.00 0.00 3.13
3443 3645 9.617523 ACTGGTGATGATTTCTTTTCAAAAATT 57.382 25.926 0.00 0.00 0.00 1.82
3444 3646 9.048446 CACTGGTGATGATTTCTTTTCAAAAAT 57.952 29.630 0.00 0.00 0.00 1.82
3445 3647 7.011295 GCACTGGTGATGATTTCTTTTCAAAAA 59.989 33.333 4.79 0.00 0.00 1.94
3446 3648 6.479660 GCACTGGTGATGATTTCTTTTCAAAA 59.520 34.615 4.79 0.00 0.00 2.44
3447 3649 5.984926 GCACTGGTGATGATTTCTTTTCAAA 59.015 36.000 4.79 0.00 0.00 2.69
3448 3650 5.509501 GGCACTGGTGATGATTTCTTTTCAA 60.510 40.000 4.79 0.00 0.00 2.69
3449 3651 4.022068 GGCACTGGTGATGATTTCTTTTCA 60.022 41.667 4.79 0.00 0.00 2.69
3450 3652 4.219288 AGGCACTGGTGATGATTTCTTTTC 59.781 41.667 4.79 0.00 37.18 2.29
3451 3653 4.154942 AGGCACTGGTGATGATTTCTTTT 58.845 39.130 4.79 0.00 37.18 2.27
3452 3654 3.771216 AGGCACTGGTGATGATTTCTTT 58.229 40.909 4.79 0.00 37.18 2.52
3453 3655 3.446442 AGGCACTGGTGATGATTTCTT 57.554 42.857 4.79 0.00 37.18 2.52
3454 3656 4.574674 TTAGGCACTGGTGATGATTTCT 57.425 40.909 4.79 0.00 41.52 2.52
3455 3657 6.942532 TTATTAGGCACTGGTGATGATTTC 57.057 37.500 4.79 0.00 41.52 2.17
3456 3658 9.236006 GATATTATTAGGCACTGGTGATGATTT 57.764 33.333 4.79 0.00 41.52 2.17
3457 3659 8.609483 AGATATTATTAGGCACTGGTGATGATT 58.391 33.333 4.79 0.00 41.52 2.57
3458 3660 8.155620 AGATATTATTAGGCACTGGTGATGAT 57.844 34.615 4.79 0.00 41.52 2.45
3459 3661 7.559335 AGATATTATTAGGCACTGGTGATGA 57.441 36.000 4.79 0.00 41.52 2.92
3460 3662 7.879677 TCAAGATATTATTAGGCACTGGTGATG 59.120 37.037 4.79 0.00 41.52 3.07
3461 3663 7.977818 TCAAGATATTATTAGGCACTGGTGAT 58.022 34.615 4.79 0.00 41.52 3.06
3462 3664 7.373617 TCAAGATATTATTAGGCACTGGTGA 57.626 36.000 4.79 0.00 41.52 4.02
3463 3665 9.725019 TTATCAAGATATTATTAGGCACTGGTG 57.275 33.333 0.00 0.00 41.52 4.17
3464 3666 9.726438 GTTATCAAGATATTATTAGGCACTGGT 57.274 33.333 0.00 0.00 41.52 4.00
3465 3667 9.725019 TGTTATCAAGATATTATTAGGCACTGG 57.275 33.333 0.00 0.00 41.52 4.00
3549 3751 0.472925 GGGGAGGAGAGGGGAGAATC 60.473 65.000 0.00 0.00 0.00 2.52
3550 3752 1.635051 GGGGAGGAGAGGGGAGAAT 59.365 63.158 0.00 0.00 0.00 2.40
3551 3753 2.647949 GGGGGAGGAGAGGGGAGAA 61.648 68.421 0.00 0.00 0.00 2.87
3552 3754 3.036959 GGGGGAGGAGAGGGGAGA 61.037 72.222 0.00 0.00 0.00 3.71
3566 3768 2.489938 TTTCGAACATGAAGAGGGGG 57.510 50.000 0.00 0.00 0.00 5.40
3567 3769 3.609853 TCATTTCGAACATGAAGAGGGG 58.390 45.455 15.86 0.00 0.00 4.79
3568 3770 4.497006 GCATCATTTCGAACATGAAGAGGG 60.497 45.833 19.65 11.91 34.31 4.30
3569 3771 4.095334 TGCATCATTTCGAACATGAAGAGG 59.905 41.667 19.65 13.45 34.31 3.69
3570 3772 5.225899 TGCATCATTTCGAACATGAAGAG 57.774 39.130 19.65 15.21 34.31 2.85
3571 3773 5.393124 GTTGCATCATTTCGAACATGAAGA 58.607 37.500 19.65 2.07 34.31 2.87
3572 3774 4.560035 GGTTGCATCATTTCGAACATGAAG 59.440 41.667 19.65 17.33 34.31 3.02
3573 3775 4.022503 TGGTTGCATCATTTCGAACATGAA 60.023 37.500 19.65 7.13 34.31 2.57
3574 3776 3.505293 TGGTTGCATCATTTCGAACATGA 59.495 39.130 18.69 18.69 35.12 3.07
3575 3777 3.835779 TGGTTGCATCATTTCGAACATG 58.164 40.909 0.00 5.71 0.00 3.21
3576 3778 4.724074 ATGGTTGCATCATTTCGAACAT 57.276 36.364 0.00 0.00 0.00 2.71
3577 3779 4.517952 AATGGTTGCATCATTTCGAACA 57.482 36.364 0.00 0.00 31.49 3.18
3578 3780 5.844301 AAAATGGTTGCATCATTTCGAAC 57.156 34.783 21.17 0.81 42.06 3.95
3599 3801 4.887655 GTGTTCCTCTCTTCAAGGGAAAAA 59.112 41.667 0.00 0.00 36.61 1.94
3600 3802 4.080015 TGTGTTCCTCTCTTCAAGGGAAAA 60.080 41.667 0.00 0.00 36.61 2.29
3601 3803 3.458118 TGTGTTCCTCTCTTCAAGGGAAA 59.542 43.478 0.00 0.00 36.61 3.13
3602 3804 3.045634 TGTGTTCCTCTCTTCAAGGGAA 58.954 45.455 0.00 0.00 34.09 3.97
3603 3805 2.634940 CTGTGTTCCTCTCTTCAAGGGA 59.365 50.000 0.00 0.00 34.46 4.20
3604 3806 2.873649 GCTGTGTTCCTCTCTTCAAGGG 60.874 54.545 0.00 0.00 34.46 3.95
3605 3807 2.038295 AGCTGTGTTCCTCTCTTCAAGG 59.962 50.000 0.00 0.00 35.05 3.61
3606 3808 3.399440 AGCTGTGTTCCTCTCTTCAAG 57.601 47.619 0.00 0.00 0.00 3.02
3607 3809 3.389329 AGAAGCTGTGTTCCTCTCTTCAA 59.611 43.478 0.00 0.00 34.14 2.69
3608 3810 2.968574 AGAAGCTGTGTTCCTCTCTTCA 59.031 45.455 0.00 0.00 34.14 3.02
3609 3811 3.676291 AGAAGCTGTGTTCCTCTCTTC 57.324 47.619 0.00 0.00 0.00 2.87
3610 3812 4.156477 ACTAGAAGCTGTGTTCCTCTCTT 58.844 43.478 0.00 0.00 0.00 2.85
3611 3813 3.773560 ACTAGAAGCTGTGTTCCTCTCT 58.226 45.455 0.00 0.00 0.00 3.10
3612 3814 4.529109 AACTAGAAGCTGTGTTCCTCTC 57.471 45.455 0.00 0.00 0.00 3.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.