Multiple sequence alignment - TraesCS7A01G500600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G500600 chr7A 100.000 3321 0 0 1 3321 690516254 690519574 0.000000e+00 6133.0
1 TraesCS7A01G500600 chr7A 90.667 900 77 4 1634 2529 690439325 690440221 0.000000e+00 1190.0
2 TraesCS7A01G500600 chr7A 90.694 677 49 6 882 1544 690438604 690439280 0.000000e+00 889.0
3 TraesCS7A01G500600 chr7A 77.872 1297 226 35 1040 2327 690399846 690401090 0.000000e+00 749.0
4 TraesCS7A01G500600 chr7A 82.623 305 33 13 190 480 567433608 567433906 5.500000e-63 252.0
5 TraesCS7A01G500600 chr7D 94.635 2684 74 19 160 2784 597547317 597544645 0.000000e+00 4095.0
6 TraesCS7A01G500600 chr7D 94.360 1649 82 6 882 2523 597619656 597621300 0.000000e+00 2519.0
7 TraesCS7A01G500600 chr7D 90.562 1674 126 17 882 2529 597570393 597568726 0.000000e+00 2187.0
8 TraesCS7A01G500600 chr7D 81.541 1051 161 19 1318 2359 597574872 597573846 0.000000e+00 835.0
9 TraesCS7A01G500600 chr7D 88.147 734 43 15 181 886 597622146 597621429 0.000000e+00 833.0
10 TraesCS7A01G500600 chr7D 90.236 297 19 9 2698 2990 597544688 597544398 2.420000e-101 379.0
11 TraesCS7A01G500600 chr7D 95.954 173 5 2 1 171 597558485 597558313 2.520000e-71 279.0
12 TraesCS7A01G500600 chr7D 93.043 115 7 1 2842 2956 514100444 514100331 2.050000e-37 167.0
13 TraesCS7A01G500600 chr7D 80.921 152 22 4 2835 2986 99815545 99815401 2.710000e-21 113.0
14 TraesCS7A01G500600 chr7B 93.333 1665 91 9 882 2530 676535099 676533439 0.000000e+00 2442.0
15 TraesCS7A01G500600 chr7B 93.926 1383 75 6 1153 2530 676862213 676860835 0.000000e+00 2080.0
16 TraesCS7A01G500600 chr7B 90.863 1379 114 10 1124 2497 676993419 676994790 0.000000e+00 1838.0
17 TraesCS7A01G500600 chr7B 81.719 1466 226 26 882 2327 676211175 676209732 0.000000e+00 1184.0
18 TraesCS7A01G500600 chr7B 84.056 715 97 12 882 1585 676217128 676216420 0.000000e+00 673.0
19 TraesCS7A01G500600 chr7B 88.201 517 27 15 160 646 676862613 676863125 1.330000e-163 586.0
20 TraesCS7A01G500600 chr7B 81.202 649 99 12 959 1589 676452262 676452905 4.950000e-138 501.0
21 TraesCS7A01G500600 chr7B 84.728 478 36 17 160 609 676532613 676533081 8.450000e-121 444.0
22 TraesCS7A01G500600 chr7B 91.509 318 23 3 160 477 676859840 676860153 5.090000e-118 435.0
23 TraesCS7A01G500600 chr7B 89.790 333 34 0 551 883 676860378 676860710 8.510000e-116 427.0
24 TraesCS7A01G500600 chr7B 87.554 233 15 4 653 883 676533091 676533311 1.180000e-64 257.0
25 TraesCS7A01G500600 chr7B 91.057 123 11 0 2408 2530 676863526 676863404 2.050000e-37 167.0
26 TraesCS7A01G500600 chr3D 89.024 492 25 3 2528 2990 611592517 611593008 1.720000e-162 582.0
27 TraesCS7A01G500600 chr3D 81.600 125 21 2 3020 3143 553221208 553221085 5.860000e-18 102.0
28 TraesCS7A01G500600 chr3D 80.000 115 21 2 3030 3143 528128037 528127924 2.120000e-12 84.2
29 TraesCS7A01G500600 chr2B 91.260 389 32 1 497 883 754024450 754024838 2.270000e-146 529.0
30 TraesCS7A01G500600 chr6B 94.942 257 13 0 2528 2784 184034068 184033812 1.430000e-108 403.0
31 TraesCS7A01G500600 chr6B 90.997 311 8 2 2700 2990 184033853 184033543 5.160000e-108 401.0
32 TraesCS7A01G500600 chr6B 87.970 133 15 1 3004 3135 43355701 43355569 4.440000e-34 156.0
33 TraesCS7A01G500600 chr6B 95.349 43 2 0 2698 2740 184033812 184033770 5.950000e-08 69.4
34 TraesCS7A01G500600 chr4A 89.262 298 29 3 494 790 693523880 693524175 1.460000e-98 370.0
35 TraesCS7A01G500600 chr6D 88.725 204 18 3 2545 2743 469583559 469583356 9.200000e-61 244.0
36 TraesCS7A01G500600 chr6D 93.478 138 8 1 2820 2956 469582915 469582778 1.560000e-48 204.0
37 TraesCS7A01G500600 chr2D 89.706 136 10 4 1 133 521662288 521662422 1.580000e-38 171.0
38 TraesCS7A01G500600 chr5B 93.939 99 6 0 2858 2956 687028390 687028488 2.060000e-32 150.0
39 TraesCS7A01G500600 chr5B 80.833 120 21 2 3017 3135 474275135 474275253 3.530000e-15 93.5
40 TraesCS7A01G500600 chr5B 82.432 74 10 2 2879 2950 305600945 305601017 9.950000e-06 62.1
41 TraesCS7A01G500600 chr5B 100.000 29 0 0 553 581 117835673 117835701 2.000000e-03 54.7
42 TraesCS7A01G500600 chrUn 87.121 132 16 1 3004 3134 94195204 94195073 7.420000e-32 148.0
43 TraesCS7A01G500600 chr5D 93.939 99 5 1 2858 2956 544630117 544630214 7.420000e-32 148.0
44 TraesCS7A01G500600 chr5D 79.426 209 21 13 2755 2943 403153079 403152873 9.670000e-26 128.0
45 TraesCS7A01G500600 chr3A 80.435 184 29 5 160 340 52044737 52044916 2.080000e-27 134.0
46 TraesCS7A01G500600 chr1B 85.950 121 14 3 52 169 590523697 590523577 3.480000e-25 126.0
47 TraesCS7A01G500600 chr3B 79.042 167 19 6 2755 2905 308425623 308425457 2.110000e-17 100.0
48 TraesCS7A01G500600 chr5A 100.000 29 0 0 553 581 110660812 110660840 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G500600 chr7A 690516254 690519574 3320 False 6133.000000 6133 100.000000 1 3321 1 chr7A.!!$F3 3320
1 TraesCS7A01G500600 chr7A 690438604 690440221 1617 False 1039.500000 1190 90.680500 882 2529 2 chr7A.!!$F4 1647
2 TraesCS7A01G500600 chr7A 690399846 690401090 1244 False 749.000000 749 77.872000 1040 2327 1 chr7A.!!$F2 1287
3 TraesCS7A01G500600 chr7D 597619656 597621300 1644 False 2519.000000 2519 94.360000 882 2523 1 chr7D.!!$F1 1641
4 TraesCS7A01G500600 chr7D 597544398 597547317 2919 True 2237.000000 4095 92.435500 160 2990 2 chr7D.!!$R5 2830
5 TraesCS7A01G500600 chr7D 597568726 597574872 6146 True 1511.000000 2187 86.051500 882 2529 2 chr7D.!!$R6 1647
6 TraesCS7A01G500600 chr7D 597621429 597622146 717 True 833.000000 833 88.147000 181 886 1 chr7D.!!$R4 705
7 TraesCS7A01G500600 chr7B 676533439 676535099 1660 True 2442.000000 2442 93.333000 882 2530 1 chr7B.!!$R3 1648
8 TraesCS7A01G500600 chr7B 676993419 676994790 1371 False 1838.000000 1838 90.863000 1124 2497 1 chr7B.!!$F2 1373
9 TraesCS7A01G500600 chr7B 676209732 676211175 1443 True 1184.000000 1184 81.719000 882 2327 1 chr7B.!!$R1 1445
10 TraesCS7A01G500600 chr7B 676860835 676863526 2691 True 1123.500000 2080 92.491500 1153 2530 2 chr7B.!!$R4 1377
11 TraesCS7A01G500600 chr7B 676216420 676217128 708 True 673.000000 673 84.056000 882 1585 1 chr7B.!!$R2 703
12 TraesCS7A01G500600 chr7B 676452262 676452905 643 False 501.000000 501 81.202000 959 1589 1 chr7B.!!$F1 630
13 TraesCS7A01G500600 chr7B 676859840 676863125 3285 False 482.666667 586 89.833333 160 883 3 chr7B.!!$F4 723
14 TraesCS7A01G500600 chr7B 676532613 676533311 698 False 350.500000 444 86.141000 160 883 2 chr7B.!!$F3 723
15 TraesCS7A01G500600 chr6B 184033543 184034068 525 True 291.133333 403 93.762667 2528 2990 3 chr6B.!!$R2 462
16 TraesCS7A01G500600 chr6D 469582778 469583559 781 True 224.000000 244 91.101500 2545 2956 2 chr6D.!!$R1 411

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
141 142 0.033504 ATTACTAGCCCGTGCCATCG 59.966 55.0 0.00 0.00 38.69 3.84 F
158 159 0.319211 TCGCACGGGTTGTTGACTAG 60.319 55.0 0.00 0.00 0.00 2.57 F
1634 7543 0.393402 TCAGGCCACATGTCTGCATC 60.393 55.0 16.42 3.03 31.99 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1897 7827 0.320374 CTCTGAGGTAAACCGGCACA 59.680 55.000 0.00 0.00 42.08 4.57 R
2022 7952 2.383527 GGGTTCTGCGACTTGAGCG 61.384 63.158 0.00 0.00 37.44 5.03 R
3281 9850 0.108424 GACCAGACAGGCTGCTACAG 60.108 60.000 15.89 2.38 43.50 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.916914 GTCTTTGCTTTTCCTATAACCTACA 57.083 36.000 0.00 0.00 0.00 2.74
25 26 7.975750 GTCTTTGCTTTTCCTATAACCTACAG 58.024 38.462 0.00 0.00 0.00 2.74
26 27 7.606839 GTCTTTGCTTTTCCTATAACCTACAGT 59.393 37.037 0.00 0.00 0.00 3.55
27 28 8.161425 TCTTTGCTTTTCCTATAACCTACAGTT 58.839 33.333 0.00 0.00 42.83 3.16
29 30 7.253905 TGCTTTTCCTATAACCTACAGTTCT 57.746 36.000 0.00 0.00 40.05 3.01
31 32 8.818860 TGCTTTTCCTATAACCTACAGTTCTTA 58.181 33.333 0.00 0.00 40.05 2.10
32 33 9.662947 GCTTTTCCTATAACCTACAGTTCTTAA 57.337 33.333 0.00 0.00 40.05 1.85
48 49 9.715121 ACAGTTCTTAAATAAACTACATTCCGA 57.285 29.630 0.00 0.00 34.05 4.55
58 59 9.893305 AATAAACTACATTCCGAAAGAAAACTG 57.107 29.630 0.00 0.00 38.21 3.16
59 60 5.358298 ACTACATTCCGAAAGAAAACTGC 57.642 39.130 0.00 0.00 38.21 4.40
60 61 5.063880 ACTACATTCCGAAAGAAAACTGCT 58.936 37.500 0.00 0.00 38.21 4.24
61 62 4.918810 ACATTCCGAAAGAAAACTGCTT 57.081 36.364 0.00 0.00 38.21 3.91
64 65 4.712122 TTCCGAAAGAAAACTGCTTTGT 57.288 36.364 0.00 0.00 35.83 2.83
68 69 5.043248 CCGAAAGAAAACTGCTTTGTCATT 58.957 37.500 0.00 0.00 35.83 2.57
70 71 5.743398 CGAAAGAAAACTGCTTTGTCATTCA 59.257 36.000 0.00 0.00 35.83 2.57
76 77 2.887152 ACTGCTTTGTCATTCAGGGAAC 59.113 45.455 0.00 0.00 0.00 3.62
119 120 9.905713 AGCATCTCCTAATTTGTGTATCTAAAA 57.094 29.630 0.00 0.00 0.00 1.52
133 134 7.493320 TGTGTATCTAAAACAATTACTAGCCCG 59.507 37.037 0.00 0.00 0.00 6.13
134 135 7.493645 GTGTATCTAAAACAATTACTAGCCCGT 59.506 37.037 0.00 0.00 0.00 5.28
135 136 6.920569 ATCTAAAACAATTACTAGCCCGTG 57.079 37.500 0.00 0.00 0.00 4.94
136 137 3.842732 AAAACAATTACTAGCCCGTGC 57.157 42.857 0.00 0.00 37.95 5.34
138 139 0.616371 ACAATTACTAGCCCGTGCCA 59.384 50.000 0.00 0.00 38.69 4.92
139 140 1.211949 ACAATTACTAGCCCGTGCCAT 59.788 47.619 0.00 0.00 38.69 4.40
140 141 1.873591 CAATTACTAGCCCGTGCCATC 59.126 52.381 0.00 0.00 38.69 3.51
141 142 0.033504 ATTACTAGCCCGTGCCATCG 59.966 55.000 0.00 0.00 38.69 3.84
142 143 2.638330 TTACTAGCCCGTGCCATCGC 62.638 60.000 0.00 0.00 38.69 4.58
152 153 3.361977 GCCATCGCACGGGTTGTT 61.362 61.111 0.00 0.00 34.03 2.83
153 154 2.560861 CCATCGCACGGGTTGTTG 59.439 61.111 0.00 0.00 0.00 3.33
154 155 1.963855 CCATCGCACGGGTTGTTGA 60.964 57.895 0.00 0.00 0.00 3.18
158 159 0.319211 TCGCACGGGTTGTTGACTAG 60.319 55.000 0.00 0.00 0.00 2.57
198 199 7.494298 GGAAGCAAACACTATTTTCTTTGGAAA 59.506 33.333 0.00 0.00 39.38 3.13
288 289 2.350522 CAATCTCGTTGGACAAGGGAG 58.649 52.381 5.09 5.97 34.06 4.30
299 301 6.389906 GTTGGACAAGGGAGACAAAATATTG 58.610 40.000 0.00 0.00 42.46 1.90
512 724 4.079253 ACCGTGGAAGCAGTATTTTGATT 58.921 39.130 0.00 0.00 0.00 2.57
820 1034 1.675714 CCACGTAATCAGCTCCAGCAA 60.676 52.381 0.48 0.00 45.16 3.91
844 1058 5.116528 AGTTTTAATTTTAGAAACTGCGCGC 59.883 36.000 27.26 27.26 40.86 6.86
890 5580 8.294954 AGCGGCTATACACACTTCTATTATAT 57.705 34.615 0.00 0.00 0.00 0.86
1270 7133 2.014857 TCATCGACTTCTACGGTGAGG 58.985 52.381 0.00 0.00 44.13 3.86
1271 7134 0.739561 ATCGACTTCTACGGTGAGGC 59.260 55.000 0.00 0.00 0.00 4.70
1273 7136 1.313812 CGACTTCTACGGTGAGGCCT 61.314 60.000 3.86 3.86 34.25 5.19
1603 7512 6.452494 ACATACGTTACAGTCAGCTTATCT 57.548 37.500 0.00 0.00 0.00 1.98
1604 7513 7.563888 ACATACGTTACAGTCAGCTTATCTA 57.436 36.000 0.00 0.00 0.00 1.98
1605 7514 7.416022 ACATACGTTACAGTCAGCTTATCTAC 58.584 38.462 0.00 0.00 0.00 2.59
1607 7516 5.881447 ACGTTACAGTCAGCTTATCTACTG 58.119 41.667 0.00 0.00 43.90 2.74
1616 7525 7.865385 CAGTCAGCTTATCTACTGTCCTTAATC 59.135 40.741 0.00 0.00 35.66 1.75
1634 7543 0.393402 TCAGGCCACATGTCTGCATC 60.393 55.000 16.42 3.03 31.99 3.91
2022 7952 4.092675 GCTACTGAAACAAGAGATCAGCAC 59.907 45.833 0.00 0.00 43.41 4.40
2181 8111 1.303888 CAGGCCATGAGTGCAACCT 60.304 57.895 5.01 0.00 37.80 3.50
2285 8215 2.130821 TAATGGGGTGCTCAACGGCA 62.131 55.000 0.00 0.00 40.15 5.69
2425 8358 3.889196 TGTTTTGGTGACGTCTTATGC 57.111 42.857 17.92 1.94 0.00 3.14
2581 8538 3.066900 CAGACTAGTGGAACATCGTAGGG 59.933 52.174 0.00 0.00 44.52 3.53
2618 8575 3.573110 GCCGTCCAATCTACTAGTATGGT 59.427 47.826 16.94 1.28 32.90 3.55
2644 8601 3.321682 CACATGGACTGTTGGTTTGGAAT 59.678 43.478 0.00 0.00 35.29 3.01
2701 8662 2.123597 TCCCCTACCATCGTCCCG 60.124 66.667 0.00 0.00 0.00 5.14
2753 8714 1.065709 TCCTAATTCCCGCACCTGTTC 60.066 52.381 0.00 0.00 0.00 3.18
2760 8721 0.748005 CCCGCACCTGTTCATTAGGG 60.748 60.000 0.00 0.00 39.71 3.53
2990 9559 9.459640 CATGGAAGCATTATTCTTTGTCAATAG 57.540 33.333 0.00 0.00 0.00 1.73
2991 9560 8.579850 TGGAAGCATTATTCTTTGTCAATAGT 57.420 30.769 0.00 0.00 0.00 2.12
2992 9561 9.023962 TGGAAGCATTATTCTTTGTCAATAGTT 57.976 29.630 0.00 0.00 0.00 2.24
2993 9562 9.294030 GGAAGCATTATTCTTTGTCAATAGTTG 57.706 33.333 0.00 0.00 0.00 3.16
2994 9563 8.693542 AAGCATTATTCTTTGTCAATAGTTGC 57.306 30.769 0.00 0.00 32.32 4.17
2995 9564 7.829725 AGCATTATTCTTTGTCAATAGTTGCA 58.170 30.769 0.00 0.00 33.42 4.08
2996 9565 7.972277 AGCATTATTCTTTGTCAATAGTTGCAG 59.028 33.333 0.00 0.00 33.42 4.41
2997 9566 7.756722 GCATTATTCTTTGTCAATAGTTGCAGT 59.243 33.333 0.00 0.00 32.39 4.40
2998 9567 9.282247 CATTATTCTTTGTCAATAGTTGCAGTC 57.718 33.333 0.00 0.00 0.00 3.51
3001 9570 5.610398 TCTTTGTCAATAGTTGCAGTCTGA 58.390 37.500 3.32 0.00 0.00 3.27
3003 9572 5.673337 TTGTCAATAGTTGCAGTCTGAAC 57.327 39.130 3.32 5.64 0.00 3.18
3004 9573 4.702831 TGTCAATAGTTGCAGTCTGAACA 58.297 39.130 3.32 0.00 0.00 3.18
3005 9574 5.308014 TGTCAATAGTTGCAGTCTGAACAT 58.692 37.500 3.32 0.73 0.00 2.71
3007 9576 7.105588 TGTCAATAGTTGCAGTCTGAACATAT 58.894 34.615 3.32 3.70 0.00 1.78
3008 9577 7.607607 TGTCAATAGTTGCAGTCTGAACATATT 59.392 33.333 3.32 8.29 0.00 1.28
3010 9579 9.013229 TCAATAGTTGCAGTCTGAACATATTTT 57.987 29.630 3.32 0.00 0.00 1.82
3011 9580 9.630098 CAATAGTTGCAGTCTGAACATATTTTT 57.370 29.630 3.32 0.00 0.00 1.94
3012 9581 9.846248 AATAGTTGCAGTCTGAACATATTTTTC 57.154 29.630 3.32 0.00 0.00 2.29
3013 9582 6.373779 AGTTGCAGTCTGAACATATTTTTCG 58.626 36.000 3.32 0.00 0.00 3.46
3014 9583 5.295431 TGCAGTCTGAACATATTTTTCGG 57.705 39.130 3.32 0.00 0.00 4.30
3015 9584 4.155826 TGCAGTCTGAACATATTTTTCGGG 59.844 41.667 3.32 0.00 31.26 5.14
3016 9585 4.438744 GCAGTCTGAACATATTTTTCGGGG 60.439 45.833 3.32 0.00 31.26 5.73
3017 9586 4.941263 CAGTCTGAACATATTTTTCGGGGA 59.059 41.667 0.00 0.00 31.26 4.81
3018 9587 5.065218 CAGTCTGAACATATTTTTCGGGGAG 59.935 44.000 0.00 0.00 31.26 4.30
3019 9588 4.335594 GTCTGAACATATTTTTCGGGGAGG 59.664 45.833 3.74 0.00 31.26 4.30
3020 9589 3.626930 TGAACATATTTTTCGGGGAGGG 58.373 45.455 0.00 0.00 0.00 4.30
3021 9590 2.748209 ACATATTTTTCGGGGAGGGG 57.252 50.000 0.00 0.00 0.00 4.79
3022 9591 1.328279 CATATTTTTCGGGGAGGGGC 58.672 55.000 0.00 0.00 0.00 5.80
3023 9592 0.179001 ATATTTTTCGGGGAGGGGCG 60.179 55.000 0.00 0.00 0.00 6.13
3024 9593 1.564483 TATTTTTCGGGGAGGGGCGT 61.564 55.000 0.00 0.00 0.00 5.68
3025 9594 2.435120 ATTTTTCGGGGAGGGGCGTT 62.435 55.000 0.00 0.00 0.00 4.84
3030 9599 4.295199 GGGGAGGGGCGTTTTGGT 62.295 66.667 0.00 0.00 0.00 3.67
3031 9600 2.989253 GGGAGGGGCGTTTTGGTG 60.989 66.667 0.00 0.00 0.00 4.17
3032 9601 3.680786 GGAGGGGCGTTTTGGTGC 61.681 66.667 0.00 0.00 0.00 5.01
3037 9606 3.989787 GGCGTTTTGGTGCCCAGG 61.990 66.667 0.00 0.00 45.73 4.45
3038 9607 4.662961 GCGTTTTGGTGCCCAGGC 62.663 66.667 0.38 0.38 42.35 4.85
3040 9609 2.919494 CGTTTTGGTGCCCAGGCTC 61.919 63.158 10.58 6.18 42.51 4.70
3042 9611 1.531365 TTTTGGTGCCCAGGCTCAG 60.531 57.895 10.58 0.00 42.51 3.35
3043 9612 4.666253 TTGGTGCCCAGGCTCAGC 62.666 66.667 10.58 6.44 42.51 4.26
3052 9621 2.284921 AGGCTCAGCTGCACCCTA 60.285 61.111 18.16 0.00 34.04 3.53
3053 9622 1.920325 AGGCTCAGCTGCACCCTAA 60.920 57.895 18.16 0.00 34.04 2.69
3055 9624 0.394899 GGCTCAGCTGCACCCTAAAT 60.395 55.000 9.47 0.00 34.04 1.40
3056 9625 1.020437 GCTCAGCTGCACCCTAAATC 58.980 55.000 9.47 0.00 0.00 2.17
3057 9626 1.679944 GCTCAGCTGCACCCTAAATCA 60.680 52.381 9.47 0.00 0.00 2.57
3058 9627 2.928334 CTCAGCTGCACCCTAAATCAT 58.072 47.619 9.47 0.00 0.00 2.45
3059 9628 2.617308 CTCAGCTGCACCCTAAATCATG 59.383 50.000 9.47 0.00 0.00 3.07
3060 9629 1.679680 CAGCTGCACCCTAAATCATGG 59.320 52.381 0.00 0.00 0.00 3.66
3061 9630 1.285962 AGCTGCACCCTAAATCATGGT 59.714 47.619 1.02 0.00 0.00 3.55
3062 9631 1.678101 GCTGCACCCTAAATCATGGTC 59.322 52.381 0.00 0.00 0.00 4.02
3063 9632 1.942657 CTGCACCCTAAATCATGGTCG 59.057 52.381 0.00 0.00 0.00 4.79
3064 9633 1.280710 TGCACCCTAAATCATGGTCGT 59.719 47.619 0.00 0.00 0.00 4.34
3065 9634 1.940613 GCACCCTAAATCATGGTCGTC 59.059 52.381 0.00 0.00 0.00 4.20
3066 9635 2.561569 CACCCTAAATCATGGTCGTCC 58.438 52.381 0.00 0.00 0.00 4.79
3068 9637 1.217882 CCTAAATCATGGTCGTCCGC 58.782 55.000 0.00 0.00 36.30 5.54
3069 9638 1.202533 CCTAAATCATGGTCGTCCGCT 60.203 52.381 0.00 0.00 36.30 5.52
3070 9639 1.860950 CTAAATCATGGTCGTCCGCTG 59.139 52.381 0.00 0.00 36.30 5.18
3073 9642 0.179100 ATCATGGTCGTCCGCTGAAG 60.179 55.000 7.61 0.00 33.71 3.02
3074 9643 2.125512 ATGGTCGTCCGCTGAAGC 60.126 61.111 0.00 0.00 36.30 3.86
3075 9644 2.942796 ATGGTCGTCCGCTGAAGCA 61.943 57.895 2.79 0.00 42.21 3.91
3076 9645 2.125512 GGTCGTCCGCTGAAGCAT 60.126 61.111 2.79 0.00 42.21 3.79
3077 9646 1.741770 GGTCGTCCGCTGAAGCATT 60.742 57.895 2.79 0.00 42.21 3.56
3078 9647 1.421485 GTCGTCCGCTGAAGCATTG 59.579 57.895 2.79 0.00 42.21 2.82
3079 9648 1.741401 TCGTCCGCTGAAGCATTGG 60.741 57.895 2.79 0.00 42.21 3.16
3080 9649 2.753966 CGTCCGCTGAAGCATTGGG 61.754 63.158 2.79 0.00 42.21 4.12
3082 9651 0.960364 GTCCGCTGAAGCATTGGGAA 60.960 55.000 2.79 0.00 42.21 3.97
3083 9652 0.677731 TCCGCTGAAGCATTGGGAAG 60.678 55.000 2.79 0.00 42.21 3.46
3084 9653 0.677731 CCGCTGAAGCATTGGGAAGA 60.678 55.000 2.79 0.00 42.21 2.87
3085 9654 0.731417 CGCTGAAGCATTGGGAAGAG 59.269 55.000 2.79 0.00 42.21 2.85
3086 9655 1.676916 CGCTGAAGCATTGGGAAGAGA 60.677 52.381 2.79 0.00 42.21 3.10
3087 9656 2.015587 GCTGAAGCATTGGGAAGAGAG 58.984 52.381 0.00 0.00 41.59 3.20
3089 9658 3.871463 GCTGAAGCATTGGGAAGAGAGAA 60.871 47.826 0.00 0.00 41.59 2.87
3090 9659 4.330250 CTGAAGCATTGGGAAGAGAGAAA 58.670 43.478 0.00 0.00 0.00 2.52
3091 9660 4.330250 TGAAGCATTGGGAAGAGAGAAAG 58.670 43.478 0.00 0.00 0.00 2.62
3092 9661 4.202503 TGAAGCATTGGGAAGAGAGAAAGT 60.203 41.667 0.00 0.00 0.00 2.66
3093 9662 3.949132 AGCATTGGGAAGAGAGAAAGTC 58.051 45.455 0.00 0.00 0.00 3.01
3094 9663 3.013219 GCATTGGGAAGAGAGAAAGTCC 58.987 50.000 0.00 0.00 0.00 3.85
3096 9665 4.260170 CATTGGGAAGAGAGAAAGTCCAG 58.740 47.826 0.00 0.00 31.30 3.86
3098 9667 2.261729 GGGAAGAGAGAAAGTCCAGGT 58.738 52.381 0.00 0.00 31.30 4.00
3099 9668 2.027653 GGGAAGAGAGAAAGTCCAGGTG 60.028 54.545 0.00 0.00 31.30 4.00
3100 9669 2.027653 GGAAGAGAGAAAGTCCAGGTGG 60.028 54.545 0.00 0.00 0.00 4.61
3101 9670 0.980423 AGAGAGAAAGTCCAGGTGGC 59.020 55.000 0.00 0.00 34.44 5.01
3102 9671 0.687354 GAGAGAAAGTCCAGGTGGCA 59.313 55.000 0.00 0.00 34.44 4.92
3103 9672 0.398318 AGAGAAAGTCCAGGTGGCAC 59.602 55.000 9.70 9.70 34.44 5.01
3106 9675 1.145738 AGAAAGTCCAGGTGGCACAAT 59.854 47.619 20.82 4.15 44.16 2.71
3108 9677 2.496899 AAGTCCAGGTGGCACAATAG 57.503 50.000 20.82 4.92 44.16 1.73
3110 9679 1.279271 AGTCCAGGTGGCACAATAGTC 59.721 52.381 20.82 0.04 44.16 2.59
3111 9680 1.279271 GTCCAGGTGGCACAATAGTCT 59.721 52.381 20.82 2.74 44.16 3.24
3112 9681 1.555075 TCCAGGTGGCACAATAGTCTC 59.445 52.381 20.82 0.00 44.16 3.36
3113 9682 1.278985 CCAGGTGGCACAATAGTCTCA 59.721 52.381 20.82 0.00 44.16 3.27
3114 9683 2.625737 CAGGTGGCACAATAGTCTCAG 58.374 52.381 20.82 0.00 44.16 3.35
3116 9685 1.373570 GTGGCACAATAGTCTCAGGC 58.626 55.000 13.86 0.00 44.16 4.85
3117 9686 0.253044 TGGCACAATAGTCTCAGGCC 59.747 55.000 0.00 0.00 40.29 5.19
3118 9687 0.253044 GGCACAATAGTCTCAGGCCA 59.747 55.000 5.01 0.00 39.66 5.36
3120 9689 1.945394 GCACAATAGTCTCAGGCCATG 59.055 52.381 5.01 0.00 0.00 3.66
3121 9690 2.569059 CACAATAGTCTCAGGCCATGG 58.431 52.381 7.63 7.63 0.00 3.66
3122 9691 2.171237 CACAATAGTCTCAGGCCATGGA 59.829 50.000 18.40 0.00 0.00 3.41
3123 9692 2.846206 ACAATAGTCTCAGGCCATGGAA 59.154 45.455 18.40 0.00 0.00 3.53
3125 9694 4.263905 ACAATAGTCTCAGGCCATGGAAAA 60.264 41.667 18.40 0.00 0.00 2.29
3126 9695 4.803329 ATAGTCTCAGGCCATGGAAAAT 57.197 40.909 18.40 0.00 0.00 1.82
3127 9696 5.912149 ATAGTCTCAGGCCATGGAAAATA 57.088 39.130 18.40 0.00 0.00 1.40
3128 9697 4.162040 AGTCTCAGGCCATGGAAAATAG 57.838 45.455 18.40 5.57 0.00 1.73
3129 9698 3.782523 AGTCTCAGGCCATGGAAAATAGA 59.217 43.478 18.40 8.01 0.00 1.98
3131 9700 4.040047 TCTCAGGCCATGGAAAATAGAGA 58.960 43.478 18.40 14.63 0.00 3.10
3132 9701 4.662179 TCTCAGGCCATGGAAAATAGAGAT 59.338 41.667 18.40 0.00 0.00 2.75
3134 9703 5.869579 TCAGGCCATGGAAAATAGAGATAC 58.130 41.667 18.40 0.00 0.00 2.24
3135 9704 4.692625 CAGGCCATGGAAAATAGAGATACG 59.307 45.833 18.40 0.00 0.00 3.06
3136 9705 4.003648 GGCCATGGAAAATAGAGATACGG 58.996 47.826 18.40 0.00 0.00 4.02
3138 9707 5.279809 GGCCATGGAAAATAGAGATACGGTA 60.280 44.000 18.40 0.00 0.00 4.02
3139 9708 5.869888 GCCATGGAAAATAGAGATACGGTAG 59.130 44.000 18.40 0.00 0.00 3.18
3140 9709 5.869888 CCATGGAAAATAGAGATACGGTAGC 59.130 44.000 5.56 0.00 0.00 3.58
3141 9710 5.117355 TGGAAAATAGAGATACGGTAGCG 57.883 43.478 13.69 13.69 0.00 4.26
3142 9711 4.823442 TGGAAAATAGAGATACGGTAGCGA 59.177 41.667 22.88 5.08 0.00 4.93
3143 9712 5.048921 TGGAAAATAGAGATACGGTAGCGAG 60.049 44.000 22.88 0.00 0.00 5.03
3145 9714 5.359716 AAATAGAGATACGGTAGCGAGTG 57.640 43.478 22.88 0.00 0.00 3.51
3146 9715 2.616634 AGAGATACGGTAGCGAGTGA 57.383 50.000 22.88 3.40 0.00 3.41
3147 9716 2.915349 AGAGATACGGTAGCGAGTGAA 58.085 47.619 22.88 1.04 0.00 3.18
3148 9717 2.873472 AGAGATACGGTAGCGAGTGAAG 59.127 50.000 22.88 0.00 0.00 3.02
3149 9718 1.948145 AGATACGGTAGCGAGTGAAGG 59.052 52.381 22.88 0.00 0.00 3.46
3150 9719 1.674962 GATACGGTAGCGAGTGAAGGT 59.325 52.381 22.88 0.00 0.00 3.50
3151 9720 2.401583 TACGGTAGCGAGTGAAGGTA 57.598 50.000 22.88 0.00 0.00 3.08
3152 9721 0.807496 ACGGTAGCGAGTGAAGGTAC 59.193 55.000 22.88 0.00 40.62 3.34
3154 9723 2.283298 CGGTAGCGAGTGAAGGTACTA 58.717 52.381 9.07 0.00 38.49 1.82
3158 9727 4.097589 GGTAGCGAGTGAAGGTACTACAAT 59.902 45.833 0.00 0.00 38.49 2.71
3159 9728 5.297776 GGTAGCGAGTGAAGGTACTACAATA 59.702 44.000 0.00 0.00 38.49 1.90
3160 9729 5.909621 AGCGAGTGAAGGTACTACAATAA 57.090 39.130 0.00 0.00 38.49 1.40
3161 9730 5.648572 AGCGAGTGAAGGTACTACAATAAC 58.351 41.667 0.00 0.00 38.49 1.89
3162 9731 5.184479 AGCGAGTGAAGGTACTACAATAACA 59.816 40.000 0.00 0.00 38.49 2.41
3163 9732 6.040878 GCGAGTGAAGGTACTACAATAACAT 58.959 40.000 0.00 0.00 38.49 2.71
3164 9733 7.067859 AGCGAGTGAAGGTACTACAATAACATA 59.932 37.037 0.00 0.00 38.49 2.29
3165 9734 7.167136 GCGAGTGAAGGTACTACAATAACATAC 59.833 40.741 0.00 0.00 38.49 2.39
3166 9735 7.375280 CGAGTGAAGGTACTACAATAACATACG 59.625 40.741 0.00 0.00 38.49 3.06
3167 9736 7.486647 AGTGAAGGTACTACAATAACATACGG 58.513 38.462 0.00 0.00 38.49 4.02
3168 9737 7.123247 AGTGAAGGTACTACAATAACATACGGT 59.877 37.037 0.00 0.00 38.49 4.83
3169 9738 7.221452 GTGAAGGTACTACAATAACATACGGTG 59.779 40.741 0.00 0.00 38.49 4.94
3170 9739 6.152932 AGGTACTACAATAACATACGGTGG 57.847 41.667 0.00 0.00 36.02 4.61
3171 9740 5.069516 AGGTACTACAATAACATACGGTGGG 59.930 44.000 0.00 0.00 36.02 4.61
3172 9741 3.800531 ACTACAATAACATACGGTGGGC 58.199 45.455 0.00 0.00 0.00 5.36
3173 9742 2.047002 ACAATAACATACGGTGGGCC 57.953 50.000 0.00 0.00 0.00 5.80
3176 9745 3.020984 CAATAACATACGGTGGGCCTTT 58.979 45.455 4.53 0.00 0.00 3.11
3177 9746 2.883122 TAACATACGGTGGGCCTTTT 57.117 45.000 4.53 0.00 0.00 2.27
3178 9747 1.541379 AACATACGGTGGGCCTTTTC 58.459 50.000 4.53 0.00 0.00 2.29
3180 9749 0.322997 CATACGGTGGGCCTTTTCCA 60.323 55.000 4.53 0.00 0.00 3.53
3181 9750 0.406361 ATACGGTGGGCCTTTTCCAA 59.594 50.000 4.53 0.00 35.86 3.53
3183 9752 0.471022 ACGGTGGGCCTTTTCCAAAT 60.471 50.000 4.53 0.00 35.86 2.32
3184 9753 0.684535 CGGTGGGCCTTTTCCAAATT 59.315 50.000 4.53 0.00 35.86 1.82
3185 9754 1.337728 CGGTGGGCCTTTTCCAAATTC 60.338 52.381 4.53 0.00 35.86 2.17
3187 9756 1.003118 GTGGGCCTTTTCCAAATTCCC 59.997 52.381 4.53 0.00 35.86 3.97
3188 9757 0.249120 GGGCCTTTTCCAAATTCCCG 59.751 55.000 0.84 0.00 0.00 5.14
3189 9758 0.249120 GGCCTTTTCCAAATTCCCGG 59.751 55.000 0.00 0.00 0.00 5.73
3190 9759 0.249120 GCCTTTTCCAAATTCCCGGG 59.751 55.000 16.85 16.85 0.00 5.73
3191 9760 0.249120 CCTTTTCCAAATTCCCGGGC 59.751 55.000 18.49 0.00 0.00 6.13
3194 9763 1.245376 TTTCCAAATTCCCGGGCGTC 61.245 55.000 18.49 0.00 0.00 5.19
3195 9764 3.138128 CCAAATTCCCGGGCGTCC 61.138 66.667 18.49 0.00 0.00 4.79
3196 9765 2.045340 CAAATTCCCGGGCGTCCT 60.045 61.111 18.49 0.00 0.00 3.85
3197 9766 2.112815 CAAATTCCCGGGCGTCCTC 61.113 63.158 18.49 0.00 0.00 3.71
3199 9768 2.814913 AAATTCCCGGGCGTCCTCAC 62.815 60.000 18.49 0.00 0.00 3.51
3207 9776 4.295119 GCGTCCTCACGGGTGTGT 62.295 66.667 0.00 0.00 46.80 3.72
3210 9779 1.495584 CGTCCTCACGGGTGTGTTTG 61.496 60.000 0.00 0.00 46.49 2.93
3211 9780 1.147376 TCCTCACGGGTGTGTTTGG 59.853 57.895 0.00 0.00 46.49 3.28
3212 9781 1.896660 CCTCACGGGTGTGTTTGGG 60.897 63.158 0.00 0.00 46.49 4.12
3213 9782 1.147376 CTCACGGGTGTGTTTGGGA 59.853 57.895 0.00 0.00 46.49 4.37
3214 9783 0.464735 CTCACGGGTGTGTTTGGGAA 60.465 55.000 0.00 0.00 46.49 3.97
3215 9784 0.183971 TCACGGGTGTGTTTGGGAAT 59.816 50.000 0.00 0.00 46.49 3.01
3216 9785 0.313672 CACGGGTGTGTTTGGGAATG 59.686 55.000 0.00 0.00 41.34 2.67
3217 9786 0.106419 ACGGGTGTGTTTGGGAATGT 60.106 50.000 0.00 0.00 0.00 2.71
3219 9788 1.817740 CGGGTGTGTTTGGGAATGTCT 60.818 52.381 0.00 0.00 0.00 3.41
3220 9789 1.886542 GGGTGTGTTTGGGAATGTCTC 59.113 52.381 0.00 0.00 0.00 3.36
3222 9791 2.554032 GGTGTGTTTGGGAATGTCTCTG 59.446 50.000 0.00 0.00 0.00 3.35
3223 9792 3.214328 GTGTGTTTGGGAATGTCTCTGT 58.786 45.455 0.00 0.00 0.00 3.41
3224 9793 4.385825 GTGTGTTTGGGAATGTCTCTGTA 58.614 43.478 0.00 0.00 0.00 2.74
3225 9794 4.819630 GTGTGTTTGGGAATGTCTCTGTAA 59.180 41.667 0.00 0.00 0.00 2.41
3226 9795 4.819630 TGTGTTTGGGAATGTCTCTGTAAC 59.180 41.667 0.00 0.00 0.00 2.50
3229 9798 2.253610 TGGGAATGTCTCTGTAACGGT 58.746 47.619 0.00 0.00 0.00 4.83
3230 9799 2.028476 TGGGAATGTCTCTGTAACGGTG 60.028 50.000 0.00 0.00 0.00 4.94
3233 9802 4.322198 GGGAATGTCTCTGTAACGGTGTTA 60.322 45.833 0.00 0.00 0.00 2.41
3234 9803 5.232463 GGAATGTCTCTGTAACGGTGTTAA 58.768 41.667 0.00 0.00 0.00 2.01
3235 9804 5.347907 GGAATGTCTCTGTAACGGTGTTAAG 59.652 44.000 0.00 0.00 0.00 1.85
3236 9805 3.645884 TGTCTCTGTAACGGTGTTAAGC 58.354 45.455 0.00 0.00 0.00 3.09
3237 9806 3.319972 TGTCTCTGTAACGGTGTTAAGCT 59.680 43.478 0.00 0.00 0.00 3.74
3238 9807 3.673809 GTCTCTGTAACGGTGTTAAGCTG 59.326 47.826 0.00 0.00 0.00 4.24
3240 9809 3.386486 TCTGTAACGGTGTTAAGCTGTG 58.614 45.455 0.00 0.00 0.00 3.66
3241 9810 1.868498 TGTAACGGTGTTAAGCTGTGC 59.132 47.619 0.00 0.00 0.00 4.57
3242 9811 1.196127 GTAACGGTGTTAAGCTGTGCC 59.804 52.381 0.00 0.00 0.00 5.01
3244 9813 0.250727 ACGGTGTTAAGCTGTGCCAT 60.251 50.000 0.00 0.00 0.00 4.40
3245 9814 0.168788 CGGTGTTAAGCTGTGCCATG 59.831 55.000 0.00 0.00 0.00 3.66
3248 9817 0.403655 TGTTAAGCTGTGCCATGGGA 59.596 50.000 15.13 8.24 0.00 4.37
3249 9818 1.005805 TGTTAAGCTGTGCCATGGGAT 59.994 47.619 15.13 0.00 0.00 3.85
3250 9819 2.240921 TGTTAAGCTGTGCCATGGGATA 59.759 45.455 15.13 8.43 0.00 2.59
3251 9820 2.880890 GTTAAGCTGTGCCATGGGATAG 59.119 50.000 23.30 23.30 0.00 2.08
3252 9821 0.184451 AAGCTGTGCCATGGGATAGG 59.816 55.000 27.28 13.77 0.00 2.57
3253 9822 0.695462 AGCTGTGCCATGGGATAGGA 60.695 55.000 27.28 4.84 0.00 2.94
3255 9824 0.250038 CTGTGCCATGGGATAGGACG 60.250 60.000 20.49 0.00 0.00 4.79
3262 9831 3.056749 GCCATGGGATAGGACGTTAGTAG 60.057 52.174 15.13 0.00 0.00 2.57
3263 9832 3.510360 CCATGGGATAGGACGTTAGTAGG 59.490 52.174 2.85 0.00 0.00 3.18
3264 9833 3.959495 TGGGATAGGACGTTAGTAGGT 57.041 47.619 0.00 0.00 0.00 3.08
3267 9836 5.133221 TGGGATAGGACGTTAGTAGGTAAC 58.867 45.833 0.00 0.00 38.16 2.50
3268 9837 4.520874 GGGATAGGACGTTAGTAGGTAACC 59.479 50.000 0.00 0.00 38.27 2.85
3269 9838 4.520874 GGATAGGACGTTAGTAGGTAACCC 59.479 50.000 0.00 0.00 38.27 4.11
3270 9839 3.456380 AGGACGTTAGTAGGTAACCCA 57.544 47.619 0.00 0.00 38.27 4.51
3271 9840 3.778265 AGGACGTTAGTAGGTAACCCAA 58.222 45.455 0.00 0.00 38.27 4.12
3272 9841 4.159557 AGGACGTTAGTAGGTAACCCAAA 58.840 43.478 0.00 0.00 38.27 3.28
3273 9842 4.221482 AGGACGTTAGTAGGTAACCCAAAG 59.779 45.833 0.00 0.00 38.27 2.77
3275 9844 5.511373 GGACGTTAGTAGGTAACCCAAAGTT 60.511 44.000 0.00 0.00 38.27 2.66
3276 9845 5.299949 ACGTTAGTAGGTAACCCAAAGTTG 58.700 41.667 0.00 0.00 39.67 3.16
3277 9846 4.152938 CGTTAGTAGGTAACCCAAAGTTGC 59.847 45.833 0.00 0.00 39.67 4.17
3278 9847 5.311265 GTTAGTAGGTAACCCAAAGTTGCT 58.689 41.667 0.00 0.00 40.60 3.91
3280 9849 2.287977 AGGTAACCCAAAGTTGCTCC 57.712 50.000 0.00 0.00 40.60 4.70
3281 9850 1.203013 AGGTAACCCAAAGTTGCTCCC 60.203 52.381 0.00 0.00 40.60 4.30
3284 9853 0.261696 AACCCAAAGTTGCTCCCTGT 59.738 50.000 0.00 0.00 37.29 4.00
3286 9855 1.073923 ACCCAAAGTTGCTCCCTGTAG 59.926 52.381 0.00 0.00 0.00 2.74
3287 9856 1.168714 CCAAAGTTGCTCCCTGTAGC 58.831 55.000 0.00 0.00 43.08 3.58
3293 9862 2.188994 GCTCCCTGTAGCAGCCTG 59.811 66.667 0.00 0.00 42.30 4.85
3295 9864 1.519719 CTCCCTGTAGCAGCCTGTC 59.480 63.158 0.00 0.00 0.00 3.51
3297 9866 1.220206 CCCTGTAGCAGCCTGTCTG 59.780 63.158 0.00 0.00 45.62 3.51
3298 9867 1.220206 CCTGTAGCAGCCTGTCTGG 59.780 63.158 0.00 0.00 43.06 3.86
3305 9874 1.233285 GCAGCCTGTCTGGTCTGTTG 61.233 60.000 16.08 3.57 43.06 3.33
3313 9932 5.551233 CCTGTCTGGTCTGTTGAAATCTTA 58.449 41.667 0.00 0.00 0.00 2.10
3316 9935 7.175641 CCTGTCTGGTCTGTTGAAATCTTATTT 59.824 37.037 0.00 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.606839 ACTGTAGGTTATAGGAAAAGCAAAGAC 59.393 37.037 0.00 0.00 0.00 3.01
5 6 7.253905 AGAACTGTAGGTTATAGGAAAAGCA 57.746 36.000 0.00 0.00 38.41 3.91
6 7 9.662947 TTAAGAACTGTAGGTTATAGGAAAAGC 57.337 33.333 0.00 0.00 38.41 3.51
32 33 9.893305 CAGTTTTCTTTCGGAATGTAGTTTATT 57.107 29.630 3.88 0.00 33.53 1.40
33 34 8.021396 GCAGTTTTCTTTCGGAATGTAGTTTAT 58.979 33.333 3.88 0.00 33.53 1.40
36 37 5.531287 AGCAGTTTTCTTTCGGAATGTAGTT 59.469 36.000 3.88 0.00 33.53 2.24
38 39 5.613358 AGCAGTTTTCTTTCGGAATGTAG 57.387 39.130 3.88 0.00 33.53 2.74
40 41 4.918810 AAGCAGTTTTCTTTCGGAATGT 57.081 36.364 3.88 0.00 33.53 2.71
41 42 5.043248 ACAAAGCAGTTTTCTTTCGGAATG 58.957 37.500 0.00 0.00 31.94 2.67
43 44 4.156922 TGACAAAGCAGTTTTCTTTCGGAA 59.843 37.500 0.00 0.00 31.94 4.30
44 45 3.692101 TGACAAAGCAGTTTTCTTTCGGA 59.308 39.130 0.00 0.00 31.94 4.55
46 47 5.743398 TGAATGACAAAGCAGTTTTCTTTCG 59.257 36.000 0.00 0.00 31.94 3.46
48 49 6.044682 CCTGAATGACAAAGCAGTTTTCTTT 58.955 36.000 0.00 0.00 34.37 2.52
49 50 5.452356 CCCTGAATGACAAAGCAGTTTTCTT 60.452 40.000 0.00 0.00 0.00 2.52
50 51 4.038402 CCCTGAATGACAAAGCAGTTTTCT 59.962 41.667 0.00 0.00 0.00 2.52
52 53 3.960102 TCCCTGAATGACAAAGCAGTTTT 59.040 39.130 0.00 0.00 0.00 2.43
54 55 3.228188 TCCCTGAATGACAAAGCAGTT 57.772 42.857 0.00 0.00 0.00 3.16
55 56 2.887152 GTTCCCTGAATGACAAAGCAGT 59.113 45.455 0.00 0.00 0.00 4.40
56 57 2.229784 GGTTCCCTGAATGACAAAGCAG 59.770 50.000 0.00 0.00 0.00 4.24
57 58 2.238521 GGTTCCCTGAATGACAAAGCA 58.761 47.619 0.00 0.00 0.00 3.91
58 59 2.238521 TGGTTCCCTGAATGACAAAGC 58.761 47.619 0.00 0.00 0.00 3.51
59 60 4.935352 TTTGGTTCCCTGAATGACAAAG 57.065 40.909 0.00 0.00 0.00 2.77
60 61 5.683876 TTTTTGGTTCCCTGAATGACAAA 57.316 34.783 0.00 0.00 0.00 2.83
87 88 5.105997 ACACAAATTAGGAGATGCTCTTTGC 60.106 40.000 0.00 0.00 43.25 3.68
88 89 6.506500 ACACAAATTAGGAGATGCTCTTTG 57.493 37.500 0.00 0.00 32.18 2.77
89 90 8.270744 AGATACACAAATTAGGAGATGCTCTTT 58.729 33.333 0.00 0.00 0.00 2.52
90 91 7.800092 AGATACACAAATTAGGAGATGCTCTT 58.200 34.615 0.00 0.00 0.00 2.85
92 93 9.547753 TTTAGATACACAAATTAGGAGATGCTC 57.452 33.333 0.00 0.00 0.00 4.26
93 94 9.905713 TTTTAGATACACAAATTAGGAGATGCT 57.094 29.630 0.00 0.00 0.00 3.79
94 95 9.937175 GTTTTAGATACACAAATTAGGAGATGC 57.063 33.333 0.00 0.00 0.00 3.91
106 107 9.169592 GGGCTAGTAATTGTTTTAGATACACAA 57.830 33.333 0.00 0.00 34.97 3.33
107 108 7.493320 CGGGCTAGTAATTGTTTTAGATACACA 59.507 37.037 0.00 0.00 0.00 3.72
108 109 7.493645 ACGGGCTAGTAATTGTTTTAGATACAC 59.506 37.037 0.00 0.00 0.00 2.90
110 111 7.517893 GCACGGGCTAGTAATTGTTTTAGATAC 60.518 40.741 0.00 0.00 36.96 2.24
111 112 6.480981 GCACGGGCTAGTAATTGTTTTAGATA 59.519 38.462 0.00 0.00 36.96 1.98
112 113 5.296035 GCACGGGCTAGTAATTGTTTTAGAT 59.704 40.000 0.00 0.00 36.96 1.98
113 114 4.632688 GCACGGGCTAGTAATTGTTTTAGA 59.367 41.667 0.00 0.00 36.96 2.10
114 115 4.201881 GGCACGGGCTAGTAATTGTTTTAG 60.202 45.833 10.74 0.00 40.87 1.85
116 117 2.490509 GGCACGGGCTAGTAATTGTTTT 59.509 45.455 10.74 0.00 40.87 2.43
117 118 2.089201 GGCACGGGCTAGTAATTGTTT 58.911 47.619 10.74 0.00 40.87 2.83
119 120 0.616371 TGGCACGGGCTAGTAATTGT 59.384 50.000 10.74 0.00 40.87 2.71
122 123 0.033504 CGATGGCACGGGCTAGTAAT 59.966 55.000 10.74 0.00 40.87 1.89
123 124 1.440060 CGATGGCACGGGCTAGTAA 59.560 57.895 10.74 0.00 40.87 2.24
126 127 4.529219 TGCGATGGCACGGGCTAG 62.529 66.667 10.74 0.00 46.21 3.42
135 136 3.361977 AACAACCCGTGCGATGGC 61.362 61.111 0.00 0.00 40.52 4.40
136 137 1.963855 TCAACAACCCGTGCGATGG 60.964 57.895 0.00 0.00 0.00 3.51
138 139 0.319083 TAGTCAACAACCCGTGCGAT 59.681 50.000 0.00 0.00 0.00 4.58
139 140 0.319211 CTAGTCAACAACCCGTGCGA 60.319 55.000 0.00 0.00 0.00 5.10
140 141 0.599204 ACTAGTCAACAACCCGTGCG 60.599 55.000 0.00 0.00 0.00 5.34
141 142 2.443887 TACTAGTCAACAACCCGTGC 57.556 50.000 0.00 0.00 0.00 5.34
142 143 4.753107 ACAAATACTAGTCAACAACCCGTG 59.247 41.667 0.00 0.00 0.00 4.94
144 145 6.647895 AGTTACAAATACTAGTCAACAACCCG 59.352 38.462 0.00 0.00 0.00 5.28
146 147 8.219105 CGAAGTTACAAATACTAGTCAACAACC 58.781 37.037 0.00 0.00 0.00 3.77
147 148 8.219105 CCGAAGTTACAAATACTAGTCAACAAC 58.781 37.037 0.00 0.00 0.00 3.32
150 151 8.524870 TTCCGAAGTTACAAATACTAGTCAAC 57.475 34.615 0.00 0.00 0.00 3.18
152 153 6.810182 GCTTCCGAAGTTACAAATACTAGTCA 59.190 38.462 9.87 0.00 0.00 3.41
153 154 6.810182 TGCTTCCGAAGTTACAAATACTAGTC 59.190 38.462 9.87 0.00 0.00 2.59
154 155 6.694447 TGCTTCCGAAGTTACAAATACTAGT 58.306 36.000 9.87 0.00 0.00 2.57
158 159 6.358822 GTGTTTGCTTCCGAAGTTACAAATAC 59.641 38.462 16.32 16.32 33.91 1.89
198 199 0.537143 TGCTTCCATCAACGGTGCTT 60.537 50.000 0.00 0.00 0.00 3.91
199 200 0.537143 TTGCTTCCATCAACGGTGCT 60.537 50.000 0.00 0.00 0.00 4.40
288 289 7.859325 TGCTTCCTACCTACAATATTTTGTC 57.141 36.000 4.71 0.00 42.43 3.18
299 301 6.349363 CCAGTTTGAATTTGCTTCCTACCTAC 60.349 42.308 0.00 0.00 32.49 3.18
820 1034 5.116528 GCGCGCAGTTTCTAAAATTAAAACT 59.883 36.000 29.10 0.00 42.39 2.66
890 5580 2.135189 CAGGTTCCCTTCATCCCCATA 58.865 52.381 0.00 0.00 0.00 2.74
909 5599 1.136690 CTACGTTTCGTTGAGCAGCA 58.863 50.000 0.00 0.00 41.54 4.41
1283 7150 2.611751 CGAACTGTTGGAACACACATGA 59.388 45.455 0.00 0.00 39.29 3.07
1548 7445 0.839277 TACGTACCATCTCCCGGAGA 59.161 55.000 19.70 19.70 43.20 3.71
1610 7519 2.357009 GCAGACATGTGGCCTGATTAAG 59.643 50.000 15.27 0.00 0.00 1.85
1611 7520 2.290832 TGCAGACATGTGGCCTGATTAA 60.291 45.455 15.27 0.00 0.00 1.40
1616 7525 1.381928 GGATGCAGACATGTGGCCTG 61.382 60.000 1.15 5.81 36.35 4.85
1634 7543 0.950836 TGACCAAGAACGCAATGTGG 59.049 50.000 0.00 0.00 35.39 4.17
1897 7827 0.320374 CTCTGAGGTAAACCGGCACA 59.680 55.000 0.00 0.00 42.08 4.57
2022 7952 2.383527 GGGTTCTGCGACTTGAGCG 61.384 63.158 0.00 0.00 37.44 5.03
2181 8111 3.758172 GGCAAACCTTCGCCTTCA 58.242 55.556 0.00 0.00 45.29 3.02
2361 8291 3.048600 AGGGAGTATTCATTAGCTGCCA 58.951 45.455 0.00 0.00 41.14 4.92
2406 8338 4.483476 AAGCATAAGACGTCACCAAAAC 57.517 40.909 19.50 0.60 0.00 2.43
2581 8538 3.060602 GGACGGCTATGATGCTTCTAAC 58.939 50.000 0.88 0.00 0.00 2.34
2644 8601 9.866655 AGCAATTATAGGAGGAATCAATTAACA 57.133 29.630 0.00 0.00 0.00 2.41
2701 8662 6.330278 GGATTGTTTCCTAATTAACAGGTGC 58.670 40.000 5.15 0.00 41.78 5.01
2731 8692 2.404559 ACAGGTGCGGGAATTAGGATA 58.595 47.619 0.00 0.00 0.00 2.59
2760 8721 5.921962 ATTAGGAAGCAAAGGGATTGTTC 57.078 39.130 0.00 0.00 41.32 3.18
2799 9201 2.120232 GTATGCTGATCCTCACGTTCG 58.880 52.381 0.00 0.00 0.00 3.95
2990 9559 5.569059 CCGAAAAATATGTTCAGACTGCAAC 59.431 40.000 0.00 4.44 0.00 4.17
2991 9560 5.335583 CCCGAAAAATATGTTCAGACTGCAA 60.336 40.000 0.00 0.00 0.00 4.08
2992 9561 4.155826 CCCGAAAAATATGTTCAGACTGCA 59.844 41.667 0.00 0.00 0.00 4.41
2993 9562 4.438744 CCCCGAAAAATATGTTCAGACTGC 60.439 45.833 0.00 0.00 0.00 4.40
2994 9563 4.941263 TCCCCGAAAAATATGTTCAGACTG 59.059 41.667 0.00 0.00 0.00 3.51
2995 9564 5.174037 TCCCCGAAAAATATGTTCAGACT 57.826 39.130 0.00 0.00 0.00 3.24
2996 9565 4.335594 CCTCCCCGAAAAATATGTTCAGAC 59.664 45.833 0.00 0.00 0.00 3.51
2997 9566 4.523083 CCTCCCCGAAAAATATGTTCAGA 58.477 43.478 0.00 0.00 0.00 3.27
2998 9567 3.632145 CCCTCCCCGAAAAATATGTTCAG 59.368 47.826 0.00 0.00 0.00 3.02
3001 9570 2.953161 GCCCCTCCCCGAAAAATATGTT 60.953 50.000 0.00 0.00 0.00 2.71
3003 9572 1.328279 GCCCCTCCCCGAAAAATATG 58.672 55.000 0.00 0.00 0.00 1.78
3004 9573 0.179001 CGCCCCTCCCCGAAAAATAT 60.179 55.000 0.00 0.00 0.00 1.28
3005 9574 1.225148 CGCCCCTCCCCGAAAAATA 59.775 57.895 0.00 0.00 0.00 1.40
3007 9576 2.643788 AAACGCCCCTCCCCGAAAAA 62.644 55.000 0.00 0.00 0.00 1.94
3008 9577 2.643788 AAAACGCCCCTCCCCGAAAA 62.644 55.000 0.00 0.00 0.00 2.29
3010 9579 3.572222 AAAACGCCCCTCCCCGAA 61.572 61.111 0.00 0.00 0.00 4.30
3011 9580 4.338710 CAAAACGCCCCTCCCCGA 62.339 66.667 0.00 0.00 0.00 5.14
3013 9582 4.295199 ACCAAAACGCCCCTCCCC 62.295 66.667 0.00 0.00 0.00 4.81
3014 9583 2.989253 CACCAAAACGCCCCTCCC 60.989 66.667 0.00 0.00 0.00 4.30
3015 9584 3.680786 GCACCAAAACGCCCCTCC 61.681 66.667 0.00 0.00 0.00 4.30
3016 9585 3.680786 GGCACCAAAACGCCCCTC 61.681 66.667 0.00 0.00 42.82 4.30
3034 9603 2.189191 TTAGGGTGCAGCTGAGCCTG 62.189 60.000 30.64 0.00 41.49 4.85
3036 9605 0.394899 ATTTAGGGTGCAGCTGAGCC 60.395 55.000 20.43 20.29 0.00 4.70
3037 9606 1.020437 GATTTAGGGTGCAGCTGAGC 58.980 55.000 20.43 12.09 0.00 4.26
3038 9607 2.408271 TGATTTAGGGTGCAGCTGAG 57.592 50.000 20.43 0.00 0.00 3.35
3040 9609 1.679680 CCATGATTTAGGGTGCAGCTG 59.320 52.381 16.65 10.11 0.00 4.24
3042 9611 1.678101 GACCATGATTTAGGGTGCAGC 59.322 52.381 7.55 7.55 45.06 5.25
3043 9612 1.942657 CGACCATGATTTAGGGTGCAG 59.057 52.381 0.00 0.00 45.06 4.41
3044 9613 1.280710 ACGACCATGATTTAGGGTGCA 59.719 47.619 0.00 0.00 45.06 4.57
3045 9614 1.940613 GACGACCATGATTTAGGGTGC 59.059 52.381 0.00 0.00 45.06 5.01
3046 9615 2.561569 GGACGACCATGATTTAGGGTG 58.438 52.381 0.00 0.00 45.06 4.61
3048 9617 1.865865 CGGACGACCATGATTTAGGG 58.134 55.000 4.48 0.00 35.97 3.53
3050 9619 1.860950 CAGCGGACGACCATGATTTAG 59.139 52.381 4.48 0.00 35.59 1.85
3052 9621 0.249120 TCAGCGGACGACCATGATTT 59.751 50.000 4.48 0.00 35.59 2.17
3053 9622 0.249120 TTCAGCGGACGACCATGATT 59.751 50.000 4.48 0.00 33.50 2.57
3055 9624 1.215382 CTTCAGCGGACGACCATGA 59.785 57.895 4.48 4.78 35.59 3.07
3056 9625 2.456119 GCTTCAGCGGACGACCATG 61.456 63.158 4.48 2.29 35.59 3.66
3057 9626 2.125512 GCTTCAGCGGACGACCAT 60.126 61.111 4.48 0.00 35.59 3.55
3058 9627 2.449031 AATGCTTCAGCGGACGACCA 62.449 55.000 4.48 0.00 45.83 4.02
3059 9628 1.741770 AATGCTTCAGCGGACGACC 60.742 57.895 0.00 0.00 45.83 4.79
3060 9629 1.421485 CAATGCTTCAGCGGACGAC 59.579 57.895 0.00 0.00 45.83 4.34
3061 9630 1.741401 CCAATGCTTCAGCGGACGA 60.741 57.895 0.00 0.00 45.83 4.20
3062 9631 2.753966 CCCAATGCTTCAGCGGACG 61.754 63.158 0.00 0.00 45.83 4.79
3063 9632 0.960364 TTCCCAATGCTTCAGCGGAC 60.960 55.000 0.00 0.00 45.83 4.79
3064 9633 0.677731 CTTCCCAATGCTTCAGCGGA 60.678 55.000 0.00 0.00 45.83 5.54
3065 9634 0.677731 TCTTCCCAATGCTTCAGCGG 60.678 55.000 0.00 0.00 45.83 5.52
3066 9635 0.731417 CTCTTCCCAATGCTTCAGCG 59.269 55.000 0.00 0.00 45.83 5.18
3068 9637 3.623906 TCTCTCTTCCCAATGCTTCAG 57.376 47.619 0.00 0.00 0.00 3.02
3069 9638 4.202503 ACTTTCTCTCTTCCCAATGCTTCA 60.203 41.667 0.00 0.00 0.00 3.02
3070 9639 4.331108 ACTTTCTCTCTTCCCAATGCTTC 58.669 43.478 0.00 0.00 0.00 3.86
3073 9642 3.013219 GGACTTTCTCTCTTCCCAATGC 58.987 50.000 0.00 0.00 0.00 3.56
3074 9643 4.260170 CTGGACTTTCTCTCTTCCCAATG 58.740 47.826 0.00 0.00 0.00 2.82
3075 9644 3.265479 CCTGGACTTTCTCTCTTCCCAAT 59.735 47.826 0.00 0.00 0.00 3.16
3076 9645 2.639839 CCTGGACTTTCTCTCTTCCCAA 59.360 50.000 0.00 0.00 0.00 4.12
3077 9646 2.260822 CCTGGACTTTCTCTCTTCCCA 58.739 52.381 0.00 0.00 0.00 4.37
3078 9647 2.027653 CACCTGGACTTTCTCTCTTCCC 60.028 54.545 0.00 0.00 0.00 3.97
3079 9648 2.027653 CCACCTGGACTTTCTCTCTTCC 60.028 54.545 0.00 0.00 37.39 3.46
3080 9649 2.614229 GCCACCTGGACTTTCTCTCTTC 60.614 54.545 0.00 0.00 37.39 2.87
3082 9651 0.980423 GCCACCTGGACTTTCTCTCT 59.020 55.000 0.00 0.00 37.39 3.10
3083 9652 0.687354 TGCCACCTGGACTTTCTCTC 59.313 55.000 0.00 0.00 37.39 3.20
3084 9653 0.398318 GTGCCACCTGGACTTTCTCT 59.602 55.000 0.00 0.00 37.39 3.10
3085 9654 0.108585 TGTGCCACCTGGACTTTCTC 59.891 55.000 0.00 0.00 37.39 2.87
3086 9655 0.550914 TTGTGCCACCTGGACTTTCT 59.449 50.000 0.00 0.00 37.39 2.52
3087 9656 1.620822 ATTGTGCCACCTGGACTTTC 58.379 50.000 0.00 0.00 37.39 2.62
3089 9658 1.705186 ACTATTGTGCCACCTGGACTT 59.295 47.619 0.00 0.00 37.39 3.01
3090 9659 1.279271 GACTATTGTGCCACCTGGACT 59.721 52.381 0.00 0.00 37.39 3.85
3091 9660 1.279271 AGACTATTGTGCCACCTGGAC 59.721 52.381 0.00 0.00 37.39 4.02
3092 9661 1.555075 GAGACTATTGTGCCACCTGGA 59.445 52.381 0.00 0.00 37.39 3.86
3093 9662 1.278985 TGAGACTATTGTGCCACCTGG 59.721 52.381 0.00 0.00 38.53 4.45
3094 9663 2.625737 CTGAGACTATTGTGCCACCTG 58.374 52.381 0.00 0.00 0.00 4.00
3096 9665 2.014068 GCCTGAGACTATTGTGCCACC 61.014 57.143 0.00 0.00 0.00 4.61
3098 9667 0.253044 GGCCTGAGACTATTGTGCCA 59.747 55.000 0.00 0.00 37.36 4.92
3099 9668 0.253044 TGGCCTGAGACTATTGTGCC 59.747 55.000 3.32 0.00 37.90 5.01
3100 9669 1.945394 CATGGCCTGAGACTATTGTGC 59.055 52.381 3.32 0.00 0.00 4.57
3101 9670 2.171237 TCCATGGCCTGAGACTATTGTG 59.829 50.000 6.96 0.00 0.00 3.33
3102 9671 2.481441 TCCATGGCCTGAGACTATTGT 58.519 47.619 6.96 0.00 0.00 2.71
3103 9672 3.565764 TTCCATGGCCTGAGACTATTG 57.434 47.619 6.96 0.00 0.00 1.90
3106 9675 4.968719 TCTATTTTCCATGGCCTGAGACTA 59.031 41.667 6.96 0.00 0.00 2.59
3108 9677 4.133078 CTCTATTTTCCATGGCCTGAGAC 58.867 47.826 6.96 0.00 0.00 3.36
3110 9679 4.428294 TCTCTATTTTCCATGGCCTGAG 57.572 45.455 6.96 8.50 0.00 3.35
3111 9680 5.511373 CGTATCTCTATTTTCCATGGCCTGA 60.511 44.000 6.96 0.00 0.00 3.86
3112 9681 4.692625 CGTATCTCTATTTTCCATGGCCTG 59.307 45.833 6.96 0.00 0.00 4.85
3113 9682 4.263068 CCGTATCTCTATTTTCCATGGCCT 60.263 45.833 6.96 0.00 0.00 5.19
3114 9683 4.003648 CCGTATCTCTATTTTCCATGGCC 58.996 47.826 6.96 0.00 0.00 5.36
3116 9685 5.869888 GCTACCGTATCTCTATTTTCCATGG 59.130 44.000 4.97 4.97 0.00 3.66
3117 9686 5.573282 CGCTACCGTATCTCTATTTTCCATG 59.427 44.000 0.00 0.00 0.00 3.66
3118 9687 5.475909 TCGCTACCGTATCTCTATTTTCCAT 59.524 40.000 0.00 0.00 35.54 3.41
3120 9689 5.048852 ACTCGCTACCGTATCTCTATTTTCC 60.049 44.000 0.00 0.00 35.54 3.13
3121 9690 5.852229 CACTCGCTACCGTATCTCTATTTTC 59.148 44.000 0.00 0.00 35.54 2.29
3122 9691 5.530171 TCACTCGCTACCGTATCTCTATTTT 59.470 40.000 0.00 0.00 35.54 1.82
3123 9692 5.061853 TCACTCGCTACCGTATCTCTATTT 58.938 41.667 0.00 0.00 35.54 1.40
3125 9694 4.268797 TCACTCGCTACCGTATCTCTAT 57.731 45.455 0.00 0.00 35.54 1.98
3126 9695 3.740631 TCACTCGCTACCGTATCTCTA 57.259 47.619 0.00 0.00 35.54 2.43
3127 9696 2.616634 TCACTCGCTACCGTATCTCT 57.383 50.000 0.00 0.00 35.54 3.10
3128 9697 2.031857 CCTTCACTCGCTACCGTATCTC 60.032 54.545 0.00 0.00 35.54 2.75
3129 9698 1.948145 CCTTCACTCGCTACCGTATCT 59.052 52.381 0.00 0.00 35.54 1.98
3131 9700 1.760192 ACCTTCACTCGCTACCGTAT 58.240 50.000 0.00 0.00 35.54 3.06
3132 9701 2.009774 GTACCTTCACTCGCTACCGTA 58.990 52.381 0.00 0.00 35.54 4.02
3134 9703 1.093159 AGTACCTTCACTCGCTACCG 58.907 55.000 0.00 0.00 0.00 4.02
3135 9704 3.012518 TGTAGTACCTTCACTCGCTACC 58.987 50.000 0.00 0.00 0.00 3.18
3136 9705 4.691860 TTGTAGTACCTTCACTCGCTAC 57.308 45.455 0.00 0.00 0.00 3.58
3138 9707 5.184479 TGTTATTGTAGTACCTTCACTCGCT 59.816 40.000 0.00 0.00 0.00 4.93
3139 9708 5.404946 TGTTATTGTAGTACCTTCACTCGC 58.595 41.667 0.00 0.00 0.00 5.03
3140 9709 7.375280 CGTATGTTATTGTAGTACCTTCACTCG 59.625 40.741 0.00 0.00 0.00 4.18
3141 9710 7.646922 CCGTATGTTATTGTAGTACCTTCACTC 59.353 40.741 0.00 0.00 0.00 3.51
3142 9711 7.123247 ACCGTATGTTATTGTAGTACCTTCACT 59.877 37.037 0.00 0.00 0.00 3.41
3143 9712 7.221452 CACCGTATGTTATTGTAGTACCTTCAC 59.779 40.741 0.00 0.00 0.00 3.18
3145 9714 6.698766 CCACCGTATGTTATTGTAGTACCTTC 59.301 42.308 0.00 0.00 0.00 3.46
3146 9715 6.407299 CCCACCGTATGTTATTGTAGTACCTT 60.407 42.308 0.00 0.00 0.00 3.50
3147 9716 5.069516 CCCACCGTATGTTATTGTAGTACCT 59.930 44.000 0.00 0.00 0.00 3.08
3148 9717 5.291971 CCCACCGTATGTTATTGTAGTACC 58.708 45.833 0.00 0.00 0.00 3.34
3149 9718 4.746611 GCCCACCGTATGTTATTGTAGTAC 59.253 45.833 0.00 0.00 0.00 2.73
3150 9719 4.202243 GGCCCACCGTATGTTATTGTAGTA 60.202 45.833 0.00 0.00 0.00 1.82
3151 9720 3.432608 GGCCCACCGTATGTTATTGTAGT 60.433 47.826 0.00 0.00 0.00 2.73
3152 9721 3.135994 GGCCCACCGTATGTTATTGTAG 58.864 50.000 0.00 0.00 0.00 2.74
3153 9722 2.773087 AGGCCCACCGTATGTTATTGTA 59.227 45.455 0.00 0.00 42.76 2.41
3154 9723 1.562475 AGGCCCACCGTATGTTATTGT 59.438 47.619 0.00 0.00 42.76 2.71
3158 9727 2.618559 GGAAAAGGCCCACCGTATGTTA 60.619 50.000 0.00 0.00 42.76 2.41
3159 9728 1.541379 GAAAAGGCCCACCGTATGTT 58.459 50.000 0.00 0.00 42.76 2.71
3160 9729 0.323087 GGAAAAGGCCCACCGTATGT 60.323 55.000 0.00 0.00 42.76 2.29
3161 9730 0.322997 TGGAAAAGGCCCACCGTATG 60.323 55.000 0.00 0.00 42.76 2.39
3162 9731 0.406361 TTGGAAAAGGCCCACCGTAT 59.594 50.000 0.00 0.00 42.76 3.06
3163 9732 0.185416 TTTGGAAAAGGCCCACCGTA 59.815 50.000 0.00 0.00 42.76 4.02
3164 9733 0.471022 ATTTGGAAAAGGCCCACCGT 60.471 50.000 0.00 0.00 42.76 4.83
3165 9734 0.684535 AATTTGGAAAAGGCCCACCG 59.315 50.000 0.00 0.00 42.76 4.94
3166 9735 1.003118 GGAATTTGGAAAAGGCCCACC 59.997 52.381 0.00 0.00 32.58 4.61
3167 9736 1.003118 GGGAATTTGGAAAAGGCCCAC 59.997 52.381 0.00 0.00 34.25 4.61
3168 9737 1.357137 GGGAATTTGGAAAAGGCCCA 58.643 50.000 0.00 0.00 34.25 5.36
3169 9738 0.249120 CGGGAATTTGGAAAAGGCCC 59.751 55.000 0.00 0.00 0.00 5.80
3170 9739 0.249120 CCGGGAATTTGGAAAAGGCC 59.751 55.000 0.00 0.00 0.00 5.19
3171 9740 0.249120 CCCGGGAATTTGGAAAAGGC 59.751 55.000 18.48 0.00 0.00 4.35
3172 9741 0.249120 GCCCGGGAATTTGGAAAAGG 59.751 55.000 29.31 0.00 0.00 3.11
3173 9742 0.108851 CGCCCGGGAATTTGGAAAAG 60.109 55.000 29.31 0.00 0.00 2.27
3176 9745 1.676303 GACGCCCGGGAATTTGGAA 60.676 57.895 29.31 0.00 0.00 3.53
3177 9746 2.045731 GACGCCCGGGAATTTGGA 60.046 61.111 29.31 0.00 0.00 3.53
3178 9747 3.138128 GGACGCCCGGGAATTTGG 61.138 66.667 29.31 7.65 0.00 3.28
3180 9749 2.271173 GAGGACGCCCGGGAATTT 59.729 61.111 29.31 3.41 37.58 1.82
3181 9750 3.006728 TGAGGACGCCCGGGAATT 61.007 61.111 29.31 6.66 37.58 2.17
3195 9764 0.464735 TTCCCAAACACACCCGTGAG 60.465 55.000 0.96 0.00 46.80 3.51
3196 9765 0.183971 ATTCCCAAACACACCCGTGA 59.816 50.000 0.96 0.00 46.80 4.35
3199 9768 0.596082 GACATTCCCAAACACACCCG 59.404 55.000 0.00 0.00 0.00 5.28
3200 9769 1.886542 GAGACATTCCCAAACACACCC 59.113 52.381 0.00 0.00 0.00 4.61
3202 9771 3.214328 ACAGAGACATTCCCAAACACAC 58.786 45.455 0.00 0.00 0.00 3.82
3203 9772 3.576078 ACAGAGACATTCCCAAACACA 57.424 42.857 0.00 0.00 0.00 3.72
3205 9774 4.062293 CGTTACAGAGACATTCCCAAACA 58.938 43.478 0.00 0.00 0.00 2.83
3207 9776 3.071892 ACCGTTACAGAGACATTCCCAAA 59.928 43.478 0.00 0.00 0.00 3.28
3210 9779 2.028385 ACACCGTTACAGAGACATTCCC 60.028 50.000 0.00 0.00 0.00 3.97
3211 9780 3.314541 ACACCGTTACAGAGACATTCC 57.685 47.619 0.00 0.00 0.00 3.01
3212 9781 5.163982 GCTTAACACCGTTACAGAGACATTC 60.164 44.000 0.00 0.00 0.00 2.67
3213 9782 4.689345 GCTTAACACCGTTACAGAGACATT 59.311 41.667 0.00 0.00 0.00 2.71
3214 9783 4.021368 AGCTTAACACCGTTACAGAGACAT 60.021 41.667 0.00 0.00 0.00 3.06
3215 9784 3.319972 AGCTTAACACCGTTACAGAGACA 59.680 43.478 0.00 0.00 0.00 3.41
3216 9785 3.673809 CAGCTTAACACCGTTACAGAGAC 59.326 47.826 0.00 0.00 0.00 3.36
3217 9786 3.319972 ACAGCTTAACACCGTTACAGAGA 59.680 43.478 0.00 0.00 0.00 3.10
3219 9788 3.386486 CACAGCTTAACACCGTTACAGA 58.614 45.455 0.00 0.00 0.00 3.41
3220 9789 2.096417 GCACAGCTTAACACCGTTACAG 60.096 50.000 0.00 0.00 0.00 2.74
3222 9791 1.196127 GGCACAGCTTAACACCGTTAC 59.804 52.381 0.00 0.00 0.00 2.50
3223 9792 1.202663 TGGCACAGCTTAACACCGTTA 60.203 47.619 0.00 0.00 0.00 3.18
3224 9793 0.464735 TGGCACAGCTTAACACCGTT 60.465 50.000 0.00 0.00 0.00 4.44
3225 9794 1.147376 TGGCACAGCTTAACACCGT 59.853 52.632 0.00 0.00 0.00 4.83
3226 9795 4.057224 TGGCACAGCTTAACACCG 57.943 55.556 0.00 0.00 0.00 4.94
3238 9807 0.180406 AACGTCCTATCCCATGGCAC 59.820 55.000 6.09 0.00 0.00 5.01
3240 9809 1.692519 ACTAACGTCCTATCCCATGGC 59.307 52.381 6.09 0.00 0.00 4.40
3241 9810 3.510360 CCTACTAACGTCCTATCCCATGG 59.490 52.174 4.14 4.14 0.00 3.66
3242 9811 4.150359 ACCTACTAACGTCCTATCCCATG 58.850 47.826 0.00 0.00 0.00 3.66
3244 9813 3.959495 ACCTACTAACGTCCTATCCCA 57.041 47.619 0.00 0.00 0.00 4.37
3245 9814 4.520874 GGTTACCTACTAACGTCCTATCCC 59.479 50.000 0.00 0.00 36.33 3.85
3248 9817 5.129368 TGGGTTACCTACTAACGTCCTAT 57.871 43.478 0.00 0.00 36.33 2.57
3249 9818 4.584638 TGGGTTACCTACTAACGTCCTA 57.415 45.455 0.00 0.00 36.33 2.94
3250 9819 3.456380 TGGGTTACCTACTAACGTCCT 57.544 47.619 0.00 0.00 36.33 3.85
3251 9820 4.021104 ACTTTGGGTTACCTACTAACGTCC 60.021 45.833 0.00 0.00 36.33 4.79
3252 9821 5.139435 ACTTTGGGTTACCTACTAACGTC 57.861 43.478 0.00 0.00 36.33 4.34
3253 9822 5.299949 CAACTTTGGGTTACCTACTAACGT 58.700 41.667 0.00 0.00 36.33 3.99
3255 9824 5.311265 AGCAACTTTGGGTTACCTACTAAC 58.689 41.667 0.00 0.00 36.23 2.34
3262 9831 1.203013 AGGGAGCAACTTTGGGTTACC 60.203 52.381 0.00 0.00 36.23 2.85
3263 9832 1.886542 CAGGGAGCAACTTTGGGTTAC 59.113 52.381 0.00 0.00 36.23 2.50
3264 9833 1.497286 ACAGGGAGCAACTTTGGGTTA 59.503 47.619 0.00 0.00 36.23 2.85
3267 9836 1.826385 CTACAGGGAGCAACTTTGGG 58.174 55.000 0.00 0.00 0.00 4.12
3268 9837 1.168714 GCTACAGGGAGCAACTTTGG 58.831 55.000 0.00 0.00 42.36 3.28
3277 9846 0.975040 AGACAGGCTGCTACAGGGAG 60.975 60.000 15.89 0.00 36.41 4.30
3278 9847 1.079256 AGACAGGCTGCTACAGGGA 59.921 57.895 15.89 0.00 31.21 4.20
3280 9849 1.220206 CCAGACAGGCTGCTACAGG 59.780 63.158 15.89 9.01 43.50 4.00
3281 9850 0.108424 GACCAGACAGGCTGCTACAG 60.108 60.000 15.89 2.38 43.50 2.74
3284 9853 0.542938 ACAGACCAGACAGGCTGCTA 60.543 55.000 15.89 0.00 43.50 3.49
3286 9855 1.072159 AACAGACCAGACAGGCTGC 59.928 57.895 15.89 7.65 43.50 5.25
3287 9856 0.394192 TCAACAGACCAGACAGGCTG 59.606 55.000 14.16 14.16 43.14 4.85
3288 9857 1.131638 TTCAACAGACCAGACAGGCT 58.868 50.000 0.00 0.00 43.14 4.58
3289 9858 1.967319 TTTCAACAGACCAGACAGGC 58.033 50.000 0.00 0.00 43.14 4.85
3290 9859 4.013267 AGATTTCAACAGACCAGACAGG 57.987 45.455 0.00 0.00 45.67 4.00
3291 9860 7.678947 AATAAGATTTCAACAGACCAGACAG 57.321 36.000 0.00 0.00 0.00 3.51
3292 9861 8.352201 CAAAATAAGATTTCAACAGACCAGACA 58.648 33.333 0.00 0.00 0.00 3.41
3293 9862 8.352942 ACAAAATAAGATTTCAACAGACCAGAC 58.647 33.333 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.