Multiple sequence alignment - TraesCS7A01G500300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G500300 chr7A 100.000 3065 0 0 1 3065 690411432 690414496 0.000000e+00 5661.0
1 TraesCS7A01G500300 chr7A 86.973 806 103 2 1531 2334 690400387 690401192 0.000000e+00 905.0
2 TraesCS7A01G500300 chr7A 77.604 1277 221 39 1011 2233 690438754 690440019 0.000000e+00 713.0
3 TraesCS7A01G500300 chr7A 83.565 718 95 11 837 1536 690399646 690400358 0.000000e+00 651.0
4 TraesCS7A01G500300 chr7A 80.702 798 134 16 1566 2352 690195151 690194363 1.220000e-168 603.0
5 TraesCS7A01G500300 chr7A 76.778 956 186 26 1292 2214 690425715 690426667 1.270000e-138 503.0
6 TraesCS7A01G500300 chr7A 76.302 557 87 21 1011 1526 690517279 690517831 3.920000e-64 255.0
7 TraesCS7A01G500300 chr7B 93.611 1080 58 7 1531 2602 676424690 676425766 0.000000e+00 1602.0
8 TraesCS7A01G500300 chr7B 91.500 800 59 7 737 1535 676423869 676424660 0.000000e+00 1092.0
9 TraesCS7A01G500300 chr7B 91.398 465 37 3 2603 3065 676425796 676426259 4.310000e-178 634.0
10 TraesCS7A01G500300 chr7B 80.989 789 128 14 1574 2350 676210396 676209618 9.400000e-170 606.0
11 TraesCS7A01G500300 chr7B 87.576 491 44 10 278 753 676423352 676423840 1.240000e-153 553.0
12 TraesCS7A01G500300 chr7B 80.301 665 129 2 1571 2234 676993961 676994624 4.560000e-138 501.0
13 TraesCS7A01G500300 chr7B 80.153 655 110 14 1708 2352 676215556 676214912 3.580000e-129 472.0
14 TraesCS7A01G500300 chr7B 76.277 548 74 28 1029 1526 676534931 676534390 1.100000e-59 241.0
15 TraesCS7A01G500300 chr7B 83.425 181 26 4 100 279 251329324 251329501 6.800000e-37 165.0
16 TraesCS7A01G500300 chr7B 86.957 138 17 1 100 237 466267790 466267654 1.470000e-33 154.0
17 TraesCS7A01G500300 chr7D 92.537 1072 78 1 1531 2602 597653773 597652704 0.000000e+00 1535.0
18 TraesCS7A01G500300 chr7D 95.975 795 30 1 742 1536 597654594 597653802 0.000000e+00 1290.0
19 TraesCS7A01G500300 chr7D 95.320 406 18 1 348 753 597655032 597654628 0.000000e+00 643.0
20 TraesCS7A01G500300 chr7D 81.273 801 128 17 1563 2352 597965794 597966583 2.010000e-176 628.0
21 TraesCS7A01G500300 chr7D 77.390 973 185 25 1295 2236 597574844 597573876 2.080000e-151 545.0
22 TraesCS7A01G500300 chr7D 85.981 428 59 1 2636 3063 597652646 597652220 1.000000e-124 457.0
23 TraesCS7A01G500300 chr7D 76.623 539 81 21 1029 1526 597546405 597545871 3.920000e-64 255.0
24 TraesCS7A01G500300 chr7D 76.514 545 79 27 1029 1526 597570225 597569683 5.070000e-63 252.0
25 TraesCS7A01G500300 chr7D 77.027 444 86 14 2603 3039 102588865 102588431 1.100000e-59 241.0
26 TraesCS7A01G500300 chr7D 75.850 559 86 30 1011 1526 597619806 597620358 3.950000e-59 239.0
27 TraesCS7A01G500300 chr4D 79.279 444 75 17 2603 3039 49780965 49780532 8.310000e-76 294.0
28 TraesCS7A01G500300 chr5A 78.243 478 86 8 2603 3065 11930610 11931084 1.080000e-74 291.0
29 TraesCS7A01G500300 chr5D 78.667 450 81 13 2603 3044 549353000 549353442 5.000000e-73 285.0
30 TraesCS7A01G500300 chr5D 83.851 161 25 1 100 260 491652722 491652881 5.290000e-33 152.0
31 TraesCS7A01G500300 chr5D 93.151 73 3 1 2441 2513 549333886 549333956 4.180000e-19 106.0
32 TraesCS7A01G500300 chr1B 77.928 444 83 13 2603 3039 17717491 17717926 2.340000e-66 263.0
33 TraesCS7A01G500300 chr1B 77.703 444 84 12 2603 3039 17712020 17712455 1.090000e-64 257.0
34 TraesCS7A01G500300 chr1B 84.868 152 21 2 100 250 49318967 49319117 5.290000e-33 152.0
35 TraesCS7A01G500300 chr4B 81.155 329 54 8 2713 3039 599634303 599633981 1.090000e-64 257.0
36 TraesCS7A01G500300 chr5B 77.753 445 76 18 2603 3039 550753297 550752868 5.070000e-63 252.0
37 TraesCS7A01G500300 chr5B 77.528 445 77 18 2603 3039 550767539 550767110 2.360000e-61 246.0
38 TraesCS7A01G500300 chr5B 81.955 133 22 2 2423 2554 81771693 81771562 8.980000e-21 111.0
39 TraesCS7A01G500300 chr6D 77.354 446 83 14 2603 3039 86127441 86127877 6.560000e-62 248.0
40 TraesCS7A01G500300 chr3D 84.530 181 26 2 99 279 400278361 400278539 8.730000e-41 178.0
41 TraesCS7A01G500300 chr3D 84.358 179 26 2 99 277 27888490 27888666 1.130000e-39 174.0
42 TraesCS7A01G500300 chr4A 83.784 185 27 3 94 277 737573757 737573575 4.060000e-39 172.0
43 TraesCS7A01G500300 chr4A 83.065 124 19 1 2423 2546 47147275 47147396 8.980000e-21 111.0
44 TraesCS7A01G500300 chr4A 86.957 92 9 2 2423 2513 621013038 621013127 1.940000e-17 100.0
45 TraesCS7A01G500300 chr4A 84.375 96 9 4 2453 2546 418136568 418136477 4.210000e-14 89.8
46 TraesCS7A01G500300 chr2B 86.806 144 17 2 100 242 801156722 801156864 3.160000e-35 159.0
47 TraesCS7A01G500300 chr2B 83.784 111 13 3 2431 2540 363354602 363354708 1.940000e-17 100.0
48 TraesCS7A01G500300 chr6B 84.472 161 21 4 126 285 46348540 46348697 4.090000e-34 156.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G500300 chr7A 690411432 690414496 3064 False 5661.00 5661 100.00000 1 3065 1 chr7A.!!$F1 3064
1 TraesCS7A01G500300 chr7A 690399646 690401192 1546 False 778.00 905 85.26900 837 2334 2 chr7A.!!$F5 1497
2 TraesCS7A01G500300 chr7A 690438754 690440019 1265 False 713.00 713 77.60400 1011 2233 1 chr7A.!!$F3 1222
3 TraesCS7A01G500300 chr7A 690194363 690195151 788 True 603.00 603 80.70200 1566 2352 1 chr7A.!!$R1 786
4 TraesCS7A01G500300 chr7A 690425715 690426667 952 False 503.00 503 76.77800 1292 2214 1 chr7A.!!$F2 922
5 TraesCS7A01G500300 chr7A 690517279 690517831 552 False 255.00 255 76.30200 1011 1526 1 chr7A.!!$F4 515
6 TraesCS7A01G500300 chr7B 676423352 676426259 2907 False 970.25 1602 91.02125 278 3065 4 chr7B.!!$F3 2787
7 TraesCS7A01G500300 chr7B 676209618 676210396 778 True 606.00 606 80.98900 1574 2350 1 chr7B.!!$R2 776
8 TraesCS7A01G500300 chr7B 676993961 676994624 663 False 501.00 501 80.30100 1571 2234 1 chr7B.!!$F2 663
9 TraesCS7A01G500300 chr7B 676214912 676215556 644 True 472.00 472 80.15300 1708 2352 1 chr7B.!!$R3 644
10 TraesCS7A01G500300 chr7B 676534390 676534931 541 True 241.00 241 76.27700 1029 1526 1 chr7B.!!$R4 497
11 TraesCS7A01G500300 chr7D 597652220 597655032 2812 True 981.25 1535 92.45325 348 3063 4 chr7D.!!$R4 2715
12 TraesCS7A01G500300 chr7D 597965794 597966583 789 False 628.00 628 81.27300 1563 2352 1 chr7D.!!$F2 789
13 TraesCS7A01G500300 chr7D 597569683 597574844 5161 True 398.50 545 76.95200 1029 2236 2 chr7D.!!$R3 1207
14 TraesCS7A01G500300 chr7D 597545871 597546405 534 True 255.00 255 76.62300 1029 1526 1 chr7D.!!$R2 497
15 TraesCS7A01G500300 chr7D 597619806 597620358 552 False 239.00 239 75.85000 1011 1526 1 chr7D.!!$F1 515

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
135 136 0.456221 AGCGTCGCTAATAGCACACT 59.544 50.0 20.25 6.36 42.58 3.55 F
1599 1730 0.178995 TGTGATCAGCTGCCACCAAA 60.179 50.0 25.71 12.36 0.00 3.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1699 1836 0.036388 ATCACGTCGGGCATGAACTT 60.036 50.0 0.0 0.0 0.00 2.66 R
2970 8109 0.669318 GAAGTGATCGTTGGCGTCCA 60.669 55.0 0.0 0.0 39.49 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.757947 TCACATCCCTCTAGAAGTCCA 57.242 47.619 0.00 0.00 0.00 4.02
22 23 4.271807 TCACATCCCTCTAGAAGTCCAT 57.728 45.455 0.00 0.00 0.00 3.41
23 24 4.624913 TCACATCCCTCTAGAAGTCCATT 58.375 43.478 0.00 0.00 0.00 3.16
24 25 5.032846 TCACATCCCTCTAGAAGTCCATTT 58.967 41.667 0.00 0.00 0.00 2.32
25 26 5.104776 TCACATCCCTCTAGAAGTCCATTTG 60.105 44.000 0.00 0.00 0.00 2.32
26 27 5.032846 ACATCCCTCTAGAAGTCCATTTGA 58.967 41.667 0.00 0.00 0.00 2.69
27 28 5.669447 ACATCCCTCTAGAAGTCCATTTGAT 59.331 40.000 0.00 0.00 0.00 2.57
28 29 5.878406 TCCCTCTAGAAGTCCATTTGATC 57.122 43.478 0.00 0.00 0.00 2.92
29 30 5.533112 TCCCTCTAGAAGTCCATTTGATCT 58.467 41.667 0.00 0.00 0.00 2.75
30 31 6.683537 TCCCTCTAGAAGTCCATTTGATCTA 58.316 40.000 0.00 0.00 0.00 1.98
31 32 7.132805 TCCCTCTAGAAGTCCATTTGATCTAA 58.867 38.462 0.00 0.00 0.00 2.10
32 33 7.791766 TCCCTCTAGAAGTCCATTTGATCTAAT 59.208 37.037 0.00 0.00 0.00 1.73
33 34 8.093927 CCCTCTAGAAGTCCATTTGATCTAATC 58.906 40.741 0.00 0.00 0.00 1.75
34 35 8.646004 CCTCTAGAAGTCCATTTGATCTAATCA 58.354 37.037 0.00 0.00 37.55 2.57
35 36 9.695526 CTCTAGAAGTCCATTTGATCTAATCAG 57.304 37.037 0.00 0.00 40.94 2.90
36 37 9.426534 TCTAGAAGTCCATTTGATCTAATCAGA 57.573 33.333 0.00 0.00 40.94 3.27
37 38 9.695526 CTAGAAGTCCATTTGATCTAATCAGAG 57.304 37.037 0.00 0.00 40.94 3.35
38 39 7.507829 AGAAGTCCATTTGATCTAATCAGAGG 58.492 38.462 0.00 0.00 40.94 3.69
39 40 6.185114 AGTCCATTTGATCTAATCAGAGGG 57.815 41.667 5.15 5.15 44.05 4.30
40 41 5.072872 AGTCCATTTGATCTAATCAGAGGGG 59.927 44.000 10.18 0.00 43.22 4.79
41 42 4.352001 TCCATTTGATCTAATCAGAGGGGG 59.648 45.833 10.18 0.00 43.22 5.40
60 61 5.813513 GGGGGCAATAATTTCTTGATCAT 57.186 39.130 0.00 0.00 0.00 2.45
61 62 5.787380 GGGGGCAATAATTTCTTGATCATC 58.213 41.667 0.00 0.00 0.00 2.92
62 63 5.305128 GGGGGCAATAATTTCTTGATCATCA 59.695 40.000 0.00 0.00 0.00 3.07
63 64 6.183360 GGGGGCAATAATTTCTTGATCATCAA 60.183 38.462 0.00 0.00 34.79 2.57
72 73 2.719739 CTTGATCATCAAGTGTGGCCT 58.280 47.619 18.08 0.00 46.50 5.19
73 74 3.877559 CTTGATCATCAAGTGTGGCCTA 58.122 45.455 18.08 0.00 46.50 3.93
74 75 4.458397 CTTGATCATCAAGTGTGGCCTAT 58.542 43.478 18.08 0.00 46.50 2.57
75 76 4.077300 TGATCATCAAGTGTGGCCTATC 57.923 45.455 3.32 0.00 0.00 2.08
76 77 3.713248 TGATCATCAAGTGTGGCCTATCT 59.287 43.478 3.32 0.00 0.00 1.98
77 78 4.164796 TGATCATCAAGTGTGGCCTATCTT 59.835 41.667 3.32 2.53 0.00 2.40
78 79 4.574674 TCATCAAGTGTGGCCTATCTTT 57.425 40.909 3.32 0.00 0.00 2.52
79 80 4.517285 TCATCAAGTGTGGCCTATCTTTC 58.483 43.478 3.32 0.00 0.00 2.62
80 81 4.225942 TCATCAAGTGTGGCCTATCTTTCT 59.774 41.667 3.32 0.00 0.00 2.52
81 82 3.942829 TCAAGTGTGGCCTATCTTTCTG 58.057 45.455 3.32 0.00 0.00 3.02
82 83 3.327757 TCAAGTGTGGCCTATCTTTCTGT 59.672 43.478 3.32 0.00 0.00 3.41
83 84 4.074970 CAAGTGTGGCCTATCTTTCTGTT 58.925 43.478 3.32 0.00 0.00 3.16
84 85 3.944087 AGTGTGGCCTATCTTTCTGTTC 58.056 45.455 3.32 0.00 0.00 3.18
85 86 3.584848 AGTGTGGCCTATCTTTCTGTTCT 59.415 43.478 3.32 0.00 0.00 3.01
86 87 4.777896 AGTGTGGCCTATCTTTCTGTTCTA 59.222 41.667 3.32 0.00 0.00 2.10
87 88 5.426833 AGTGTGGCCTATCTTTCTGTTCTAT 59.573 40.000 3.32 0.00 0.00 1.98
88 89 6.611642 AGTGTGGCCTATCTTTCTGTTCTATA 59.388 38.462 3.32 0.00 0.00 1.31
89 90 7.291182 AGTGTGGCCTATCTTTCTGTTCTATAT 59.709 37.037 3.32 0.00 0.00 0.86
90 91 8.585881 GTGTGGCCTATCTTTCTGTTCTATATA 58.414 37.037 3.32 0.00 0.00 0.86
91 92 9.154632 TGTGGCCTATCTTTCTGTTCTATATAA 57.845 33.333 3.32 0.00 0.00 0.98
92 93 9.425577 GTGGCCTATCTTTCTGTTCTATATAAC 57.574 37.037 3.32 0.00 0.00 1.89
93 94 9.381038 TGGCCTATCTTTCTGTTCTATATAACT 57.619 33.333 3.32 0.00 0.00 2.24
94 95 9.863845 GGCCTATCTTTCTGTTCTATATAACTC 57.136 37.037 0.00 0.00 0.00 3.01
122 123 5.556690 AAAAATAGCGAACTATAGCGTCG 57.443 39.130 17.78 17.78 38.18 5.12
124 125 4.610844 GCGAACTATAGCGTCGCT 57.389 55.556 30.02 25.08 45.01 4.93
125 126 3.742290 GCGAACTATAGCGTCGCTA 57.258 52.632 30.02 27.81 45.55 4.26
126 127 2.028287 GCGAACTATAGCGTCGCTAA 57.972 50.000 30.02 17.28 44.62 3.09
127 128 2.582687 GCGAACTATAGCGTCGCTAAT 58.417 47.619 30.02 19.24 44.62 1.73
128 129 3.740590 GCGAACTATAGCGTCGCTAATA 58.259 45.455 30.02 19.32 44.62 0.98
129 130 3.779758 GCGAACTATAGCGTCGCTAATAG 59.220 47.826 30.02 26.90 44.62 1.73
130 131 3.779758 CGAACTATAGCGTCGCTAATAGC 59.220 47.826 29.13 16.46 44.62 2.97
131 132 4.668431 CGAACTATAGCGTCGCTAATAGCA 60.668 45.833 29.13 9.37 44.62 3.49
132 133 4.080969 ACTATAGCGTCGCTAATAGCAC 57.919 45.455 29.13 8.59 44.62 4.40
133 134 3.501062 ACTATAGCGTCGCTAATAGCACA 59.499 43.478 29.13 7.80 44.62 4.57
134 135 2.115348 TAGCGTCGCTAATAGCACAC 57.885 50.000 24.13 7.13 42.58 3.82
135 136 0.456221 AGCGTCGCTAATAGCACACT 59.544 50.000 20.25 6.36 42.58 3.55
136 137 1.674441 AGCGTCGCTAATAGCACACTA 59.326 47.619 20.25 0.00 42.58 2.74
137 138 2.293677 AGCGTCGCTAATAGCACACTAT 59.706 45.455 20.25 0.00 42.58 2.12
138 139 3.501062 AGCGTCGCTAATAGCACACTATA 59.499 43.478 20.25 0.00 42.58 1.31
139 140 3.846896 GCGTCGCTAATAGCACACTATAG 59.153 47.826 10.68 0.00 42.58 1.31
140 141 3.846896 CGTCGCTAATAGCACACTATAGC 59.153 47.826 13.15 0.00 42.58 2.97
141 142 3.846896 GTCGCTAATAGCACACTATAGCG 59.153 47.826 16.73 16.73 46.43 4.26
142 143 3.501062 TCGCTAATAGCACACTATAGCGT 59.499 43.478 20.51 0.00 45.94 5.07
143 144 4.023450 TCGCTAATAGCACACTATAGCGTT 60.023 41.667 20.51 0.00 45.94 4.84
144 145 4.680110 CGCTAATAGCACACTATAGCGTTT 59.320 41.667 13.15 0.00 43.92 3.60
145 146 5.164177 CGCTAATAGCACACTATAGCGTTTC 60.164 44.000 13.15 0.00 43.92 2.78
146 147 5.921408 GCTAATAGCACACTATAGCGTTTCT 59.079 40.000 7.49 0.00 41.89 2.52
147 148 6.088350 GCTAATAGCACACTATAGCGTTTCTC 59.912 42.308 7.49 0.00 41.89 2.87
148 149 3.868757 AGCACACTATAGCGTTTCTCA 57.131 42.857 0.00 0.00 35.48 3.27
149 150 4.392921 AGCACACTATAGCGTTTCTCAT 57.607 40.909 0.00 0.00 35.48 2.90
150 151 5.515797 AGCACACTATAGCGTTTCTCATA 57.484 39.130 0.00 0.00 35.48 2.15
151 152 5.902681 AGCACACTATAGCGTTTCTCATAA 58.097 37.500 0.00 0.00 35.48 1.90
152 153 6.516718 AGCACACTATAGCGTTTCTCATAAT 58.483 36.000 0.00 0.00 35.48 1.28
153 154 6.986817 AGCACACTATAGCGTTTCTCATAATT 59.013 34.615 0.00 0.00 35.48 1.40
154 155 7.042456 AGCACACTATAGCGTTTCTCATAATTG 60.042 37.037 0.00 0.00 35.48 2.32
155 156 7.254455 GCACACTATAGCGTTTCTCATAATTGT 60.254 37.037 0.00 0.00 0.00 2.71
156 157 8.269424 CACACTATAGCGTTTCTCATAATTGTC 58.731 37.037 0.00 0.00 0.00 3.18
157 158 8.198109 ACACTATAGCGTTTCTCATAATTGTCT 58.802 33.333 0.00 0.00 0.00 3.41
158 159 8.695284 CACTATAGCGTTTCTCATAATTGTCTC 58.305 37.037 0.00 0.00 0.00 3.36
159 160 6.755461 ATAGCGTTTCTCATAATTGTCTCG 57.245 37.500 0.00 0.00 0.00 4.04
160 161 3.307242 AGCGTTTCTCATAATTGTCTCGC 59.693 43.478 0.00 0.00 40.14 5.03
161 162 3.307242 GCGTTTCTCATAATTGTCTCGCT 59.693 43.478 0.00 0.00 37.55 4.93
162 163 4.503007 GCGTTTCTCATAATTGTCTCGCTA 59.497 41.667 0.00 0.00 37.55 4.26
163 164 5.005394 GCGTTTCTCATAATTGTCTCGCTAA 59.995 40.000 0.00 0.00 37.55 3.09
164 165 6.455113 GCGTTTCTCATAATTGTCTCGCTAAA 60.455 38.462 0.00 0.00 37.55 1.85
165 166 7.621991 CGTTTCTCATAATTGTCTCGCTAAAT 58.378 34.615 0.00 0.00 0.00 1.40
166 167 8.752254 CGTTTCTCATAATTGTCTCGCTAAATA 58.248 33.333 0.00 0.00 0.00 1.40
175 176 7.849804 ATTGTCTCGCTAAATAAATCAGTGT 57.150 32.000 0.00 0.00 0.00 3.55
176 177 8.942338 ATTGTCTCGCTAAATAAATCAGTGTA 57.058 30.769 0.00 0.00 0.00 2.90
177 178 7.751047 TGTCTCGCTAAATAAATCAGTGTAC 57.249 36.000 0.00 0.00 0.00 2.90
178 179 7.317390 TGTCTCGCTAAATAAATCAGTGTACA 58.683 34.615 0.00 0.00 0.00 2.90
179 180 7.815549 TGTCTCGCTAAATAAATCAGTGTACAA 59.184 33.333 0.00 0.00 0.00 2.41
180 181 8.818057 GTCTCGCTAAATAAATCAGTGTACAAT 58.182 33.333 0.00 0.00 0.00 2.71
181 182 9.378551 TCTCGCTAAATAAATCAGTGTACAATT 57.621 29.630 0.00 0.00 0.00 2.32
182 183 9.638300 CTCGCTAAATAAATCAGTGTACAATTC 57.362 33.333 0.00 0.00 0.00 2.17
183 184 8.609176 TCGCTAAATAAATCAGTGTACAATTCC 58.391 33.333 0.00 0.00 0.00 3.01
184 185 8.612619 CGCTAAATAAATCAGTGTACAATTCCT 58.387 33.333 0.00 0.00 0.00 3.36
185 186 9.937175 GCTAAATAAATCAGTGTACAATTCCTC 57.063 33.333 0.00 0.00 0.00 3.71
187 188 4.946784 AAATCAGTGTACAATTCCTCGC 57.053 40.909 0.00 0.00 0.00 5.03
188 189 3.895232 ATCAGTGTACAATTCCTCGCT 57.105 42.857 0.00 0.00 0.00 4.93
189 190 5.339008 AATCAGTGTACAATTCCTCGCTA 57.661 39.130 0.00 0.00 0.00 4.26
190 191 4.794278 TCAGTGTACAATTCCTCGCTAA 57.206 40.909 0.00 0.00 0.00 3.09
191 192 5.339008 TCAGTGTACAATTCCTCGCTAAT 57.661 39.130 0.00 0.00 0.00 1.73
192 193 6.459670 TCAGTGTACAATTCCTCGCTAATA 57.540 37.500 0.00 0.00 0.00 0.98
193 194 6.504398 TCAGTGTACAATTCCTCGCTAATAG 58.496 40.000 0.00 0.00 0.00 1.73
194 195 5.175856 CAGTGTACAATTCCTCGCTAATAGC 59.824 44.000 1.41 1.41 38.02 2.97
195 196 5.047847 GTGTACAATTCCTCGCTAATAGCA 58.952 41.667 13.15 0.00 42.58 3.49
196 197 5.047847 TGTACAATTCCTCGCTAATAGCAC 58.952 41.667 13.15 0.00 42.58 4.40
197 198 3.123804 ACAATTCCTCGCTAATAGCACG 58.876 45.455 13.15 2.14 42.58 5.34
198 199 1.784525 ATTCCTCGCTAATAGCACGC 58.215 50.000 13.15 0.00 42.58 5.34
199 200 0.744874 TTCCTCGCTAATAGCACGCT 59.255 50.000 13.15 0.00 42.58 5.07
200 201 1.601166 TCCTCGCTAATAGCACGCTA 58.399 50.000 13.15 0.39 42.58 4.26
201 202 2.160205 TCCTCGCTAATAGCACGCTAT 58.840 47.619 13.15 5.72 42.58 2.97
202 203 3.340928 TCCTCGCTAATAGCACGCTATA 58.659 45.455 13.15 1.16 42.58 1.31
203 204 3.374367 TCCTCGCTAATAGCACGCTATAG 59.626 47.826 13.15 10.32 42.58 1.31
204 205 3.102276 CTCGCTAATAGCACGCTATAGC 58.898 50.000 15.09 15.09 42.58 2.97
224 225 9.847706 CTATAGCGGGATATAGCACATTAATAG 57.152 37.037 0.00 0.00 30.96 1.73
225 226 5.360591 AGCGGGATATAGCACATTAATAGC 58.639 41.667 4.36 4.36 35.48 2.97
226 227 5.104941 AGCGGGATATAGCACATTAATAGCA 60.105 40.000 12.83 2.32 35.48 3.49
227 228 5.760253 GCGGGATATAGCACATTAATAGCAT 59.240 40.000 12.83 7.88 0.00 3.79
228 229 6.929049 GCGGGATATAGCACATTAATAGCATA 59.071 38.462 12.83 9.28 0.00 3.14
229 230 7.604164 GCGGGATATAGCACATTAATAGCATAT 59.396 37.037 12.83 12.29 0.00 1.78
230 231 9.494271 CGGGATATAGCACATTAATAGCATATT 57.506 33.333 12.83 0.00 0.00 1.28
238 239 8.306761 AGCACATTAATAGCATATTTTAAGGGC 58.693 33.333 12.83 0.00 0.00 5.19
239 240 7.545615 GCACATTAATAGCATATTTTAAGGGCC 59.454 37.037 0.00 0.00 0.00 5.80
240 241 8.584157 CACATTAATAGCATATTTTAAGGGCCA 58.416 33.333 6.18 0.00 0.00 5.36
241 242 8.585018 ACATTAATAGCATATTTTAAGGGCCAC 58.415 33.333 6.18 0.00 0.00 5.01
242 243 8.584157 CATTAATAGCATATTTTAAGGGCCACA 58.416 33.333 6.18 0.00 0.00 4.17
243 244 6.405278 AATAGCATATTTTAAGGGCCACAC 57.595 37.500 6.18 0.00 0.00 3.82
244 245 3.981212 AGCATATTTTAAGGGCCACACT 58.019 40.909 6.18 0.00 0.00 3.55
245 246 5.124036 AGCATATTTTAAGGGCCACACTA 57.876 39.130 6.18 0.00 0.00 2.74
246 247 5.705400 AGCATATTTTAAGGGCCACACTAT 58.295 37.500 6.18 0.00 0.00 2.12
247 248 6.136155 AGCATATTTTAAGGGCCACACTATT 58.864 36.000 6.18 0.00 0.00 1.73
248 249 6.611236 AGCATATTTTAAGGGCCACACTATTT 59.389 34.615 6.18 0.00 0.00 1.40
249 250 7.125659 AGCATATTTTAAGGGCCACACTATTTT 59.874 33.333 6.18 0.00 0.00 1.82
250 251 7.224557 GCATATTTTAAGGGCCACACTATTTTG 59.775 37.037 6.18 0.00 0.00 2.44
251 252 6.680148 ATTTTAAGGGCCACACTATTTTGT 57.320 33.333 6.18 0.00 0.00 2.83
252 253 5.715434 TTTAAGGGCCACACTATTTTGTC 57.285 39.130 6.18 0.00 0.00 3.18
253 254 2.969821 AGGGCCACACTATTTTGTCA 57.030 45.000 6.18 0.00 0.00 3.58
254 255 3.456380 AGGGCCACACTATTTTGTCAT 57.544 42.857 6.18 0.00 0.00 3.06
255 256 4.584638 AGGGCCACACTATTTTGTCATA 57.415 40.909 6.18 0.00 0.00 2.15
256 257 4.526970 AGGGCCACACTATTTTGTCATAG 58.473 43.478 6.18 0.00 33.50 2.23
257 258 3.066760 GGGCCACACTATTTTGTCATAGC 59.933 47.826 4.39 0.00 30.74 2.97
258 259 3.694072 GGCCACACTATTTTGTCATAGCA 59.306 43.478 0.00 0.00 30.74 3.49
259 260 4.438744 GGCCACACTATTTTGTCATAGCAC 60.439 45.833 0.00 0.00 30.74 4.40
260 261 4.727734 GCCACACTATTTTGTCATAGCACG 60.728 45.833 0.00 0.00 30.74 5.34
261 262 4.391830 CCACACTATTTTGTCATAGCACGT 59.608 41.667 0.00 0.00 30.74 4.49
262 263 5.106712 CCACACTATTTTGTCATAGCACGTT 60.107 40.000 0.00 0.00 30.74 3.99
263 264 6.091577 CCACACTATTTTGTCATAGCACGTTA 59.908 38.462 0.00 0.00 30.74 3.18
264 265 6.953743 CACACTATTTTGTCATAGCACGTTAC 59.046 38.462 0.00 0.00 30.74 2.50
265 266 6.647481 ACACTATTTTGTCATAGCACGTTACA 59.353 34.615 0.00 0.00 30.74 2.41
266 267 7.333423 ACACTATTTTGTCATAGCACGTTACAT 59.667 33.333 0.00 0.00 30.74 2.29
267 268 8.175069 CACTATTTTGTCATAGCACGTTACATT 58.825 33.333 0.00 0.00 30.74 2.71
268 269 8.726988 ACTATTTTGTCATAGCACGTTACATTT 58.273 29.630 0.00 0.00 30.74 2.32
269 270 9.554724 CTATTTTGTCATAGCACGTTACATTTT 57.445 29.630 0.00 0.00 0.00 1.82
270 271 8.810652 ATTTTGTCATAGCACGTTACATTTTT 57.189 26.923 0.00 0.00 0.00 1.94
271 272 7.845617 TTTGTCATAGCACGTTACATTTTTC 57.154 32.000 0.00 0.00 0.00 2.29
272 273 5.933790 TGTCATAGCACGTTACATTTTTCC 58.066 37.500 0.00 0.00 0.00 3.13
273 274 5.470437 TGTCATAGCACGTTACATTTTTCCA 59.530 36.000 0.00 0.00 0.00 3.53
274 275 6.150307 TGTCATAGCACGTTACATTTTTCCAT 59.850 34.615 0.00 0.00 0.00 3.41
275 276 7.027161 GTCATAGCACGTTACATTTTTCCATT 58.973 34.615 0.00 0.00 0.00 3.16
276 277 7.008266 GTCATAGCACGTTACATTTTTCCATTG 59.992 37.037 0.00 0.00 0.00 2.82
333 334 8.927411 TCTTCTATGTCATCAATTCATCCACTA 58.073 33.333 0.00 0.00 0.00 2.74
422 425 4.272018 GGTGTAGAGCATCAGCATTAACTG 59.728 45.833 0.00 0.00 45.49 3.16
436 439 9.617523 TCAGCATTAACTGATGAAATATTGAGA 57.382 29.630 4.17 0.00 46.79 3.27
600 615 6.827586 AGAAAAACTTACAAGGACAACACA 57.172 33.333 0.00 0.00 0.00 3.72
673 688 5.966335 GCATGAATTAATGCCTTAAAAGCG 58.034 37.500 16.04 0.00 45.93 4.68
687 702 8.303876 TGCCTTAAAAGCGAAATCTTATCTTTT 58.696 29.630 0.00 0.00 39.43 2.27
879 940 4.102649 TCAATACGTCTTGATACACGCTG 58.897 43.478 11.90 0.00 39.73 5.18
923 984 2.562296 AGGGAAGCAAAGGACCTCATA 58.438 47.619 0.00 0.00 0.00 2.15
1151 1226 4.844420 CTCAGGTTCGATCTGGGC 57.156 61.111 13.90 0.00 33.36 5.36
1189 1264 1.846439 CCTACTTCCACCATCCCACAT 59.154 52.381 0.00 0.00 0.00 3.21
1229 1304 3.119955 CGTCTCATTGTGGACTTCTACGA 60.120 47.826 0.00 0.00 0.00 3.43
1239 1314 3.508402 TGGACTTCTACGATAAGTGCACA 59.492 43.478 21.04 0.00 46.29 4.57
1264 1339 1.037493 ACGCAGGTGTACTTCACTCA 58.963 50.000 0.00 0.00 45.50 3.41
1286 1361 5.183713 TCATGCTCGATTTCTGAATTTGGTT 59.816 36.000 0.00 0.00 0.00 3.67
1353 1432 1.000486 CCTGAGGAGAAGACGGGGA 60.000 63.158 0.00 0.00 0.00 4.81
1384 1463 2.515057 TGCCAACTTCGCCGTGTT 60.515 55.556 0.00 0.00 0.00 3.32
1385 1464 1.227586 TGCCAACTTCGCCGTGTTA 60.228 52.632 0.00 0.00 0.00 2.41
1416 1495 0.395311 CCTGAGCCCGGACTACTACA 60.395 60.000 0.73 0.00 0.00 2.74
1418 1497 0.330604 TGAGCCCGGACTACTACAGT 59.669 55.000 0.73 0.00 41.47 3.55
1459 1541 2.047844 CCACTGGTGCCTCGACTG 60.048 66.667 0.00 0.00 0.00 3.51
1461 1543 3.314331 ACTGGTGCCTCGACTGGG 61.314 66.667 0.00 0.00 0.00 4.45
1472 1554 2.344203 CGACTGGGAGCTCGGTTCT 61.344 63.158 7.83 0.00 0.00 3.01
1523 1605 4.636206 CCTGGAAAAGGTAAGTACTCATGC 59.364 45.833 0.00 0.00 41.74 4.06
1526 1608 5.472137 TGGAAAAGGTAAGTACTCATGCAAC 59.528 40.000 0.00 0.00 0.00 4.17
1527 1609 5.390567 GGAAAAGGTAAGTACTCATGCAACG 60.391 44.000 0.00 0.00 0.00 4.10
1540 1657 6.948353 ACTCATGCAACGAAATATATCACAC 58.052 36.000 0.00 0.00 0.00 3.82
1545 1662 8.684655 CATGCAACGAAATATATCACACATTTC 58.315 33.333 0.00 0.00 36.01 2.17
1549 1666 9.438291 CAACGAAATATATCACACATTTCTTCC 57.562 33.333 0.00 0.00 36.81 3.46
1559 1687 5.769662 TCACACATTTCTTCCTGCATTAGTT 59.230 36.000 0.00 0.00 0.00 2.24
1569 1697 6.701841 TCTTCCTGCATTAGTTAGCTAATTCG 59.298 38.462 9.88 1.53 43.31 3.34
1599 1730 0.178995 TGTGATCAGCTGCCACCAAA 60.179 50.000 25.71 12.36 0.00 3.28
1600 1731 0.242017 GTGATCAGCTGCCACCAAAC 59.758 55.000 21.19 5.98 0.00 2.93
1620 1751 1.077357 TCTCCTCAGCGAGTCCCTC 60.077 63.158 0.00 0.00 0.00 4.30
1632 1763 1.825474 GAGTCCCTCATCGTCTTTGGA 59.175 52.381 0.00 0.00 0.00 3.53
1659 1790 3.443329 TCGGTGGCAACGACTATAACTTA 59.557 43.478 25.81 0.00 42.51 2.24
1667 1798 7.147863 TGGCAACGACTATAACTTATGGTTCTA 60.148 37.037 0.00 0.00 38.32 2.10
1674 1805 7.303998 ACTATAACTTATGGTTCTACGATCGC 58.696 38.462 16.60 0.00 39.17 4.58
1696 1833 4.664677 GCAGTCGTGACACGCCCT 62.665 66.667 22.99 17.05 42.21 5.19
1699 1836 0.736636 CAGTCGTGACACGCCCTATA 59.263 55.000 22.99 1.62 42.21 1.31
1703 1840 1.820519 TCGTGACACGCCCTATAAGTT 59.179 47.619 22.99 0.00 42.21 2.66
1833 6921 1.344953 ACCTGAGTGGGCACAAGACA 61.345 55.000 0.00 0.00 41.11 3.41
1845 6933 2.423538 GCACAAGACAAACAAGTCCACT 59.576 45.455 0.00 0.00 39.34 4.00
1878 6966 1.221840 CGGCTGCCTCAAGTGGTAT 59.778 57.895 17.92 0.00 0.00 2.73
1883 6971 3.343617 GCTGCCTCAAGTGGTATAACAA 58.656 45.455 0.00 0.00 0.00 2.83
1890 6978 6.702329 CCTCAAGTGGTATAACAAGTTCTCT 58.298 40.000 0.00 0.00 0.00 3.10
1923 7011 0.846693 AACTGTTGAGGCAGGAGGTT 59.153 50.000 0.00 0.00 40.59 3.50
1966 7054 1.204704 CTGGCGTGAAGGTCATCTACA 59.795 52.381 0.00 0.00 0.00 2.74
2012 7100 2.447047 AGTTTGTCAGGAACCCCAAGAT 59.553 45.455 0.00 0.00 33.88 2.40
2148 7236 0.322546 GGGACCAGGTTCACATGACC 60.323 60.000 0.00 0.00 0.00 4.02
2224 7312 4.389576 CGTTGCTCCACGCTTGCC 62.390 66.667 0.00 0.00 40.11 4.52
2260 7351 6.238484 CCTTTCGAGACTTGAAGAAATGTTGT 60.238 38.462 0.00 0.00 32.97 3.32
2280 7371 4.203226 TGTTGCAACCAAGATCTGTTACA 58.797 39.130 26.14 0.18 0.00 2.41
2290 7382 4.035278 AGATCTGTTACACGCTAGCTTC 57.965 45.455 13.93 0.00 0.00 3.86
2292 7384 3.936372 TCTGTTACACGCTAGCTTCTT 57.064 42.857 13.93 0.00 0.00 2.52
2296 7388 3.243941 TGTTACACGCTAGCTTCTTGGAA 60.244 43.478 13.93 4.71 0.00 3.53
2301 7393 5.001232 ACACGCTAGCTTCTTGGAATTTTA 58.999 37.500 13.93 0.00 0.00 1.52
2381 7487 1.531602 GGTCTGTTTTGGGCCAGCT 60.532 57.895 6.23 0.00 0.00 4.24
2419 7525 9.413048 CTCAGAATTCCTAATAAATCGTACCTC 57.587 37.037 0.65 0.00 0.00 3.85
2421 7527 9.712305 CAGAATTCCTAATAAATCGTACCTCAT 57.288 33.333 0.65 0.00 0.00 2.90
2440 7546 5.221722 CCTCATTCCCATACTGCTAGCTTAA 60.222 44.000 17.23 0.83 0.00 1.85
2518 7627 1.697284 AGAGGAGAGACATATGCGCA 58.303 50.000 14.96 14.96 0.00 6.09
2537 7646 4.070552 GCTCGTTCTCCGCCACCT 62.071 66.667 0.00 0.00 36.19 4.00
2678 7817 1.244019 GCATGTTTGGTTCGCCTCCT 61.244 55.000 0.00 0.00 38.36 3.69
2698 7837 5.017490 TCCTGTCTCTTCGTTTTATCTCCT 58.983 41.667 0.00 0.00 0.00 3.69
2805 7944 1.207089 CCACCGAGTTCCTGAGCATTA 59.793 52.381 0.00 0.00 0.00 1.90
2839 7978 0.332632 TCTTCCCCATCCCAGCTTTG 59.667 55.000 0.00 0.00 0.00 2.77
2843 7982 2.361610 CCATCCCAGCTTTGCGGT 60.362 61.111 0.00 0.00 0.00 5.68
2880 8019 3.181450 GGCATAGTAGGCATCTGAAACCT 60.181 47.826 9.30 6.99 37.61 3.50
2970 8109 6.078456 TGAACTCTTCATAATGGGTGGAAT 57.922 37.500 0.00 0.00 34.08 3.01
2978 8117 2.148723 AATGGGTGGAATGGACGCCA 62.149 55.000 1.01 1.01 40.25 5.69
3014 8153 0.596577 CGACGACTTCTTCCCTGACA 59.403 55.000 0.00 0.00 0.00 3.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.271807 TGGACTTCTAGAGGGATGTGAT 57.728 45.455 6.82 0.00 0.00 3.06
1 2 3.757947 TGGACTTCTAGAGGGATGTGA 57.242 47.619 6.82 0.00 0.00 3.58
2 3 5.104776 TCAAATGGACTTCTAGAGGGATGTG 60.105 44.000 6.82 1.57 0.00 3.21
3 4 5.032846 TCAAATGGACTTCTAGAGGGATGT 58.967 41.667 6.82 0.00 0.00 3.06
5 6 6.149616 AGATCAAATGGACTTCTAGAGGGAT 58.850 40.000 6.82 0.00 0.00 3.85
6 7 5.533112 AGATCAAATGGACTTCTAGAGGGA 58.467 41.667 6.82 0.00 0.00 4.20
7 8 5.885449 AGATCAAATGGACTTCTAGAGGG 57.115 43.478 6.82 0.28 0.00 4.30
8 9 8.646004 TGATTAGATCAAATGGACTTCTAGAGG 58.354 37.037 0.00 0.00 36.11 3.69
9 10 9.695526 CTGATTAGATCAAATGGACTTCTAGAG 57.304 37.037 0.00 0.00 39.11 2.43
10 11 9.426534 TCTGATTAGATCAAATGGACTTCTAGA 57.573 33.333 0.00 0.00 39.11 2.43
11 12 9.695526 CTCTGATTAGATCAAATGGACTTCTAG 57.304 37.037 0.00 0.00 39.11 2.43
12 13 8.646004 CCTCTGATTAGATCAAATGGACTTCTA 58.354 37.037 0.00 0.00 39.11 2.10
13 14 7.419981 CCCTCTGATTAGATCAAATGGACTTCT 60.420 40.741 0.00 0.00 39.11 2.85
14 15 6.709846 CCCTCTGATTAGATCAAATGGACTTC 59.290 42.308 0.00 0.00 39.11 3.01
15 16 6.410157 CCCCTCTGATTAGATCAAATGGACTT 60.410 42.308 0.00 0.00 39.11 3.01
16 17 5.072872 CCCCTCTGATTAGATCAAATGGACT 59.927 44.000 0.00 0.00 39.11 3.85
17 18 5.312079 CCCCTCTGATTAGATCAAATGGAC 58.688 45.833 0.00 0.00 39.11 4.02
18 19 4.352001 CCCCCTCTGATTAGATCAAATGGA 59.648 45.833 0.00 0.00 39.11 3.41
19 20 4.660168 CCCCCTCTGATTAGATCAAATGG 58.340 47.826 0.00 0.00 39.11 3.16
38 39 5.305128 TGATGATCAAGAAATTATTGCCCCC 59.695 40.000 0.00 0.00 0.00 5.40
39 40 6.409524 TGATGATCAAGAAATTATTGCCCC 57.590 37.500 0.00 0.00 0.00 5.80
53 54 2.885135 AGGCCACACTTGATGATCAA 57.115 45.000 5.01 7.73 34.79 2.57
54 55 3.713248 AGATAGGCCACACTTGATGATCA 59.287 43.478 5.01 0.00 0.00 2.92
55 56 4.348863 AGATAGGCCACACTTGATGATC 57.651 45.455 5.01 0.00 0.00 2.92
56 57 4.785346 AAGATAGGCCACACTTGATGAT 57.215 40.909 5.01 0.00 0.00 2.45
57 58 4.225942 AGAAAGATAGGCCACACTTGATGA 59.774 41.667 5.01 0.00 0.00 2.92
58 59 4.334759 CAGAAAGATAGGCCACACTTGATG 59.665 45.833 5.01 5.94 0.00 3.07
59 60 4.018960 ACAGAAAGATAGGCCACACTTGAT 60.019 41.667 5.01 0.00 0.00 2.57
60 61 3.327757 ACAGAAAGATAGGCCACACTTGA 59.672 43.478 5.01 0.00 0.00 3.02
61 62 3.679389 ACAGAAAGATAGGCCACACTTG 58.321 45.455 5.01 0.00 0.00 3.16
62 63 4.042187 AGAACAGAAAGATAGGCCACACTT 59.958 41.667 5.01 3.83 0.00 3.16
63 64 3.584848 AGAACAGAAAGATAGGCCACACT 59.415 43.478 5.01 0.00 0.00 3.55
64 65 3.944087 AGAACAGAAAGATAGGCCACAC 58.056 45.455 5.01 0.00 0.00 3.82
65 66 5.957771 ATAGAACAGAAAGATAGGCCACA 57.042 39.130 5.01 0.00 0.00 4.17
66 67 9.425577 GTTATATAGAACAGAAAGATAGGCCAC 57.574 37.037 5.01 0.00 0.00 5.01
67 68 9.381038 AGTTATATAGAACAGAAAGATAGGCCA 57.619 33.333 12.51 0.00 0.00 5.36
68 69 9.863845 GAGTTATATAGAACAGAAAGATAGGCC 57.136 37.037 12.51 0.00 0.00 5.19
100 101 4.085210 GCGACGCTATAGTTCGCTATTTTT 60.085 41.667 28.94 1.61 45.01 1.94
101 102 3.424529 GCGACGCTATAGTTCGCTATTTT 59.575 43.478 28.94 2.18 45.01 1.82
102 103 2.978489 GCGACGCTATAGTTCGCTATTT 59.022 45.455 28.94 2.75 45.01 1.40
103 104 2.582687 GCGACGCTATAGTTCGCTATT 58.417 47.619 28.94 3.05 45.01 1.73
104 105 2.244281 GCGACGCTATAGTTCGCTAT 57.756 50.000 28.94 3.34 45.01 2.97
105 106 3.742290 GCGACGCTATAGTTCGCTA 57.258 52.632 28.94 0.00 45.01 4.26
106 107 4.610844 GCGACGCTATAGTTCGCT 57.389 55.556 28.94 8.34 45.01 4.93
108 109 3.779758 GCTATTAGCGACGCTATAGTTCG 59.220 47.826 28.67 17.00 41.01 3.95
109 110 4.554200 GTGCTATTAGCGACGCTATAGTTC 59.446 45.833 28.67 20.30 46.26 3.01
110 111 4.023450 TGTGCTATTAGCGACGCTATAGTT 60.023 41.667 28.67 16.35 46.26 2.24
111 112 3.501062 TGTGCTATTAGCGACGCTATAGT 59.499 43.478 28.67 19.42 46.26 2.12
112 113 3.846896 GTGTGCTATTAGCGACGCTATAG 59.153 47.826 28.67 26.76 46.26 1.31
113 114 3.501062 AGTGTGCTATTAGCGACGCTATA 59.499 43.478 28.67 19.32 46.26 1.31
114 115 2.293677 AGTGTGCTATTAGCGACGCTAT 59.706 45.455 28.67 19.98 46.26 2.97
115 116 1.674441 AGTGTGCTATTAGCGACGCTA 59.326 47.619 25.04 25.04 46.26 4.26
116 117 0.456221 AGTGTGCTATTAGCGACGCT 59.544 50.000 27.45 27.45 46.26 5.07
117 118 2.115348 TAGTGTGCTATTAGCGACGC 57.885 50.000 13.03 13.03 46.26 5.19
118 119 3.846896 GCTATAGTGTGCTATTAGCGACG 59.153 47.826 10.94 0.00 46.26 5.12
119 120 3.846896 CGCTATAGTGTGCTATTAGCGAC 59.153 47.826 15.33 9.75 46.18 5.19
120 121 3.501062 ACGCTATAGTGTGCTATTAGCGA 59.499 43.478 24.14 0.00 46.18 4.93
121 122 3.822996 ACGCTATAGTGTGCTATTAGCG 58.177 45.455 18.00 17.92 46.26 4.26
122 123 5.921408 AGAAACGCTATAGTGTGCTATTAGC 59.079 40.000 19.31 8.80 42.82 3.09
123 124 7.139392 TGAGAAACGCTATAGTGTGCTATTAG 58.861 38.462 19.31 0.00 38.71 1.73
124 125 7.034685 TGAGAAACGCTATAGTGTGCTATTA 57.965 36.000 19.31 7.74 38.71 0.98
125 126 5.902681 TGAGAAACGCTATAGTGTGCTATT 58.097 37.500 19.31 9.93 38.71 1.73
126 127 5.515797 TGAGAAACGCTATAGTGTGCTAT 57.484 39.130 19.31 7.56 40.69 2.97
127 128 4.976224 TGAGAAACGCTATAGTGTGCTA 57.024 40.909 19.31 2.93 38.96 3.49
128 129 3.868757 TGAGAAACGCTATAGTGTGCT 57.131 42.857 19.31 18.12 38.96 4.40
129 130 6.771188 ATTATGAGAAACGCTATAGTGTGC 57.229 37.500 19.31 14.08 38.96 4.57
130 131 8.131455 ACAATTATGAGAAACGCTATAGTGTG 57.869 34.615 19.31 5.33 38.96 3.82
131 132 8.198109 AGACAATTATGAGAAACGCTATAGTGT 58.802 33.333 13.24 13.24 41.05 3.55
132 133 8.581057 AGACAATTATGAGAAACGCTATAGTG 57.419 34.615 11.80 11.80 0.00 2.74
133 134 7.591795 CGAGACAATTATGAGAAACGCTATAGT 59.408 37.037 0.84 0.00 0.00 2.12
134 135 7.409874 GCGAGACAATTATGAGAAACGCTATAG 60.410 40.741 0.00 0.00 39.38 1.31
135 136 6.362551 GCGAGACAATTATGAGAAACGCTATA 59.637 38.462 0.00 0.00 39.38 1.31
136 137 5.175856 GCGAGACAATTATGAGAAACGCTAT 59.824 40.000 0.00 0.00 39.38 2.97
137 138 4.503007 GCGAGACAATTATGAGAAACGCTA 59.497 41.667 0.00 0.00 39.38 4.26
138 139 3.307242 GCGAGACAATTATGAGAAACGCT 59.693 43.478 0.00 0.00 39.38 5.07
139 140 3.307242 AGCGAGACAATTATGAGAAACGC 59.693 43.478 0.00 0.00 42.03 4.84
140 141 6.569228 TTAGCGAGACAATTATGAGAAACG 57.431 37.500 0.00 0.00 0.00 3.60
149 150 9.378551 ACACTGATTTATTTAGCGAGACAATTA 57.621 29.630 0.00 0.00 0.00 1.40
150 151 8.268850 ACACTGATTTATTTAGCGAGACAATT 57.731 30.769 0.00 0.00 0.00 2.32
151 152 7.849804 ACACTGATTTATTTAGCGAGACAAT 57.150 32.000 0.00 0.00 0.00 2.71
152 153 7.815549 TGTACACTGATTTATTTAGCGAGACAA 59.184 33.333 0.00 0.00 0.00 3.18
153 154 7.317390 TGTACACTGATTTATTTAGCGAGACA 58.683 34.615 0.00 0.00 0.00 3.41
154 155 7.751047 TGTACACTGATTTATTTAGCGAGAC 57.249 36.000 0.00 0.00 0.00 3.36
155 156 8.942338 ATTGTACACTGATTTATTTAGCGAGA 57.058 30.769 0.00 0.00 0.00 4.04
156 157 9.638300 GAATTGTACACTGATTTATTTAGCGAG 57.362 33.333 0.00 0.00 0.00 5.03
157 158 8.609176 GGAATTGTACACTGATTTATTTAGCGA 58.391 33.333 0.00 0.00 0.00 4.93
158 159 8.612619 AGGAATTGTACACTGATTTATTTAGCG 58.387 33.333 0.00 0.00 0.00 4.26
159 160 9.937175 GAGGAATTGTACACTGATTTATTTAGC 57.063 33.333 0.00 0.00 0.00 3.09
161 162 8.609176 GCGAGGAATTGTACACTGATTTATTTA 58.391 33.333 0.00 0.00 0.00 1.40
162 163 7.336931 AGCGAGGAATTGTACACTGATTTATTT 59.663 33.333 0.00 0.00 0.00 1.40
163 164 6.823689 AGCGAGGAATTGTACACTGATTTATT 59.176 34.615 0.00 0.00 0.00 1.40
164 165 6.349300 AGCGAGGAATTGTACACTGATTTAT 58.651 36.000 0.00 0.00 0.00 1.40
165 166 5.730550 AGCGAGGAATTGTACACTGATTTA 58.269 37.500 0.00 0.00 0.00 1.40
166 167 4.579869 AGCGAGGAATTGTACACTGATTT 58.420 39.130 0.00 0.00 0.00 2.17
167 168 4.207891 AGCGAGGAATTGTACACTGATT 57.792 40.909 0.00 0.00 0.00 2.57
168 169 3.895232 AGCGAGGAATTGTACACTGAT 57.105 42.857 0.00 0.00 0.00 2.90
169 170 4.794278 TTAGCGAGGAATTGTACACTGA 57.206 40.909 0.00 0.00 0.00 3.41
170 171 5.175856 GCTATTAGCGAGGAATTGTACACTG 59.824 44.000 0.00 0.00 0.00 3.66
171 172 5.163447 TGCTATTAGCGAGGAATTGTACACT 60.163 40.000 10.94 0.00 46.26 3.55
172 173 5.047847 TGCTATTAGCGAGGAATTGTACAC 58.952 41.667 10.94 0.00 46.26 2.90
173 174 5.047847 GTGCTATTAGCGAGGAATTGTACA 58.952 41.667 10.94 0.00 46.26 2.90
174 175 4.148348 CGTGCTATTAGCGAGGAATTGTAC 59.852 45.833 10.94 0.00 46.26 2.90
175 176 4.295870 CGTGCTATTAGCGAGGAATTGTA 58.704 43.478 10.94 0.00 46.26 2.41
176 177 3.123804 CGTGCTATTAGCGAGGAATTGT 58.876 45.455 10.94 0.00 46.26 2.71
177 178 2.096713 GCGTGCTATTAGCGAGGAATTG 60.097 50.000 10.94 0.00 46.26 2.32
178 179 2.135933 GCGTGCTATTAGCGAGGAATT 58.864 47.619 10.94 0.00 46.26 2.17
179 180 1.341531 AGCGTGCTATTAGCGAGGAAT 59.658 47.619 10.94 0.00 46.26 3.01
180 181 0.744874 AGCGTGCTATTAGCGAGGAA 59.255 50.000 10.94 0.00 46.26 3.36
181 182 1.601166 TAGCGTGCTATTAGCGAGGA 58.399 50.000 10.94 0.00 46.26 3.71
182 183 2.638556 ATAGCGTGCTATTAGCGAGG 57.361 50.000 8.54 7.17 46.26 4.63
183 184 3.102276 GCTATAGCGTGCTATTAGCGAG 58.898 50.000 18.62 11.00 46.26 5.03
184 185 3.132629 GCTATAGCGTGCTATTAGCGA 57.867 47.619 18.62 0.92 46.26 4.93
198 199 9.847706 CTATTAATGTGCTATATCCCGCTATAG 57.152 37.037 0.00 0.00 35.61 1.31
199 200 8.304596 GCTATTAATGTGCTATATCCCGCTATA 58.695 37.037 0.00 0.00 0.00 1.31
200 201 7.155328 GCTATTAATGTGCTATATCCCGCTAT 58.845 38.462 0.00 0.00 0.00 2.97
201 202 6.097696 TGCTATTAATGTGCTATATCCCGCTA 59.902 38.462 13.74 0.00 0.00 4.26
202 203 5.104941 TGCTATTAATGTGCTATATCCCGCT 60.105 40.000 13.74 0.00 0.00 5.52
203 204 5.116180 TGCTATTAATGTGCTATATCCCGC 58.884 41.667 13.74 0.00 0.00 6.13
204 205 9.494271 AATATGCTATTAATGTGCTATATCCCG 57.506 33.333 13.74 0.00 0.00 5.14
212 213 8.306761 GCCCTTAAAATATGCTATTAATGTGCT 58.693 33.333 13.74 5.31 0.00 4.40
213 214 7.545615 GGCCCTTAAAATATGCTATTAATGTGC 59.454 37.037 0.00 3.41 0.00 4.57
214 215 8.584157 TGGCCCTTAAAATATGCTATTAATGTG 58.416 33.333 0.00 0.00 0.00 3.21
215 216 8.585018 GTGGCCCTTAAAATATGCTATTAATGT 58.415 33.333 0.00 0.00 0.00 2.71
216 217 8.584157 TGTGGCCCTTAAAATATGCTATTAATG 58.416 33.333 0.00 0.00 0.00 1.90
217 218 8.585018 GTGTGGCCCTTAAAATATGCTATTAAT 58.415 33.333 0.00 0.00 0.00 1.40
218 219 7.782644 AGTGTGGCCCTTAAAATATGCTATTAA 59.217 33.333 0.00 0.00 0.00 1.40
219 220 7.294584 AGTGTGGCCCTTAAAATATGCTATTA 58.705 34.615 0.00 0.00 0.00 0.98
220 221 6.136155 AGTGTGGCCCTTAAAATATGCTATT 58.864 36.000 0.00 0.00 0.00 1.73
221 222 5.705400 AGTGTGGCCCTTAAAATATGCTAT 58.295 37.500 0.00 0.00 0.00 2.97
222 223 5.124036 AGTGTGGCCCTTAAAATATGCTA 57.876 39.130 0.00 0.00 0.00 3.49
223 224 3.981212 AGTGTGGCCCTTAAAATATGCT 58.019 40.909 0.00 0.00 0.00 3.79
224 225 6.405278 AATAGTGTGGCCCTTAAAATATGC 57.595 37.500 0.00 0.00 0.00 3.14
225 226 8.257306 ACAAAATAGTGTGGCCCTTAAAATATG 58.743 33.333 0.00 0.00 0.00 1.78
226 227 8.374184 ACAAAATAGTGTGGCCCTTAAAATAT 57.626 30.769 0.00 0.00 0.00 1.28
227 228 7.451877 TGACAAAATAGTGTGGCCCTTAAAATA 59.548 33.333 0.00 0.00 0.00 1.40
228 229 6.268847 TGACAAAATAGTGTGGCCCTTAAAAT 59.731 34.615 0.00 0.00 0.00 1.82
229 230 5.598830 TGACAAAATAGTGTGGCCCTTAAAA 59.401 36.000 0.00 0.00 0.00 1.52
230 231 5.141182 TGACAAAATAGTGTGGCCCTTAAA 58.859 37.500 0.00 0.00 0.00 1.52
231 232 4.730966 TGACAAAATAGTGTGGCCCTTAA 58.269 39.130 0.00 0.00 0.00 1.85
232 233 4.374689 TGACAAAATAGTGTGGCCCTTA 57.625 40.909 0.00 0.00 0.00 2.69
233 234 3.237268 TGACAAAATAGTGTGGCCCTT 57.763 42.857 0.00 0.00 0.00 3.95
234 235 2.969821 TGACAAAATAGTGTGGCCCT 57.030 45.000 0.00 0.00 0.00 5.19
235 236 3.066760 GCTATGACAAAATAGTGTGGCCC 59.933 47.826 0.00 0.00 33.42 5.80
236 237 3.694072 TGCTATGACAAAATAGTGTGGCC 59.306 43.478 0.00 0.00 33.42 5.36
237 238 4.662145 GTGCTATGACAAAATAGTGTGGC 58.338 43.478 0.00 0.00 33.42 5.01
238 239 4.391830 ACGTGCTATGACAAAATAGTGTGG 59.608 41.667 0.00 0.00 33.42 4.17
239 240 5.530519 ACGTGCTATGACAAAATAGTGTG 57.469 39.130 0.00 0.00 33.42 3.82
240 241 6.647481 TGTAACGTGCTATGACAAAATAGTGT 59.353 34.615 0.00 0.00 33.42 3.55
241 242 7.056002 TGTAACGTGCTATGACAAAATAGTG 57.944 36.000 0.00 0.00 33.42 2.74
242 243 7.843490 ATGTAACGTGCTATGACAAAATAGT 57.157 32.000 0.00 0.00 33.42 2.12
243 244 9.554724 AAAATGTAACGTGCTATGACAAAATAG 57.445 29.630 0.00 0.00 33.92 1.73
244 245 9.900710 AAAAATGTAACGTGCTATGACAAAATA 57.099 25.926 0.00 0.00 0.00 1.40
245 246 8.810652 AAAAATGTAACGTGCTATGACAAAAT 57.189 26.923 0.00 0.00 0.00 1.82
246 247 7.380065 GGAAAAATGTAACGTGCTATGACAAAA 59.620 33.333 0.00 0.00 0.00 2.44
247 248 6.858993 GGAAAAATGTAACGTGCTATGACAAA 59.141 34.615 0.00 0.00 0.00 2.83
248 249 6.017026 TGGAAAAATGTAACGTGCTATGACAA 60.017 34.615 0.00 0.00 0.00 3.18
249 250 5.470437 TGGAAAAATGTAACGTGCTATGACA 59.530 36.000 0.00 0.00 0.00 3.58
250 251 5.933790 TGGAAAAATGTAACGTGCTATGAC 58.066 37.500 0.00 0.00 0.00 3.06
251 252 6.751514 ATGGAAAAATGTAACGTGCTATGA 57.248 33.333 0.00 0.00 0.00 2.15
252 253 7.026562 TCAATGGAAAAATGTAACGTGCTATG 58.973 34.615 0.00 0.00 0.00 2.23
253 254 7.151999 TCAATGGAAAAATGTAACGTGCTAT 57.848 32.000 0.00 0.00 0.00 2.97
254 255 6.561737 TCAATGGAAAAATGTAACGTGCTA 57.438 33.333 0.00 0.00 0.00 3.49
255 256 5.446143 TCAATGGAAAAATGTAACGTGCT 57.554 34.783 0.00 0.00 0.00 4.40
256 257 6.804295 TGTATCAATGGAAAAATGTAACGTGC 59.196 34.615 0.00 0.00 0.00 5.34
257 258 8.735303 TTGTATCAATGGAAAAATGTAACGTG 57.265 30.769 0.00 0.00 0.00 4.49
258 259 9.921637 ATTTGTATCAATGGAAAAATGTAACGT 57.078 25.926 0.00 0.00 0.00 3.99
333 334 8.301252 ACCATATATCATGCATGCACATTTAT 57.699 30.769 25.37 17.94 0.00 1.40
336 337 5.712917 TGACCATATATCATGCATGCACATT 59.287 36.000 25.37 12.78 0.00 2.71
339 340 5.589050 AGATGACCATATATCATGCATGCAC 59.411 40.000 25.37 6.02 36.92 4.57
568 575 9.052759 GTCCTTGTAAGTTTTTCTAACATCAGA 57.947 33.333 0.00 0.00 0.00 3.27
728 743 5.311265 TGCAATTAAATTTGTGGGCATTGA 58.689 33.333 0.00 0.00 0.00 2.57
821 881 6.759497 ATTTTTAGCAGGGTATGTGAAGAC 57.241 37.500 0.00 0.00 0.00 3.01
859 920 4.365899 TCAGCGTGTATCAAGACGTATT 57.634 40.909 0.00 0.00 43.82 1.89
864 925 2.000447 GGGTTCAGCGTGTATCAAGAC 59.000 52.381 0.00 0.00 0.00 3.01
879 940 8.021396 CCTTTTATAGCGCATTTTATAGGGTTC 58.979 37.037 11.47 0.00 0.00 3.62
923 984 9.533831 AGATCTAGTTTTGGTTTTGTATTCCAT 57.466 29.630 0.00 0.00 0.00 3.41
1017 1092 0.985490 AGACCAAGAGGAGGGCCATC 60.985 60.000 9.46 9.46 38.69 3.51
1107 1182 1.153449 GCCCGTGTCGATGATGGAA 60.153 57.895 7.13 0.00 0.00 3.53
1239 1314 0.245539 AAGTACACCTGCGTGCGTAT 59.754 50.000 0.00 0.00 44.40 3.06
1264 1339 5.649782 AACCAAATTCAGAAATCGAGCAT 57.350 34.783 0.00 0.00 0.00 3.79
1286 1361 2.715005 GCTTGCGCTGACACACAA 59.285 55.556 9.73 0.00 0.00 3.33
1337 1416 0.114560 ACTTCCCCGTCTTCTCCTCA 59.885 55.000 0.00 0.00 0.00 3.86
1353 1432 4.324991 GGCACCGGTCGGGAACTT 62.325 66.667 2.59 0.00 39.97 2.66
1391 1470 2.366301 TCCGGGCTCAGGGCAATA 60.366 61.111 0.00 0.00 44.01 1.90
1397 1476 0.395311 TGTAGTAGTCCGGGCTCAGG 60.395 60.000 14.54 0.00 0.00 3.86
1433 1512 1.200519 GGCACCAGTGGGACATACTA 58.799 55.000 15.21 0.00 44.52 1.82
1440 1519 3.311110 GTCGAGGCACCAGTGGGA 61.311 66.667 15.21 0.00 38.05 4.37
1459 1541 1.002087 TCTTGAAAGAACCGAGCTCCC 59.998 52.381 8.47 0.00 30.73 4.30
1461 1543 2.734079 CTGTCTTGAAAGAACCGAGCTC 59.266 50.000 2.73 2.73 36.68 4.09
1472 1554 0.937304 GTGCGAGCACTGTCTTGAAA 59.063 50.000 19.74 0.00 43.12 2.69
1523 1605 9.438291 GGAAGAAATGTGTGATATATTTCGTTG 57.562 33.333 5.94 0.00 45.90 4.10
1526 1608 7.800380 GCAGGAAGAAATGTGTGATATATTTCG 59.200 37.037 5.94 0.00 45.90 3.46
1527 1609 8.623903 TGCAGGAAGAAATGTGTGATATATTTC 58.376 33.333 3.79 3.79 43.36 2.17
1536 1618 5.633830 ACTAATGCAGGAAGAAATGTGTG 57.366 39.130 0.00 0.00 0.00 3.82
1540 1657 6.690194 AGCTAACTAATGCAGGAAGAAATG 57.310 37.500 0.00 0.00 0.00 2.32
1545 1662 6.480320 ACGAATTAGCTAACTAATGCAGGAAG 59.520 38.462 8.70 0.00 46.25 3.46
1549 1666 8.895932 AAAAACGAATTAGCTAACTAATGCAG 57.104 30.769 8.70 0.00 46.25 4.41
1599 1730 2.041686 GGACTCGCTGAGGAGACGT 61.042 63.158 9.75 0.00 37.49 4.34
1600 1731 2.766400 GGGACTCGCTGAGGAGACG 61.766 68.421 9.75 0.00 37.49 4.18
1620 1751 2.099921 ACCGATCTCTCCAAAGACGATG 59.900 50.000 0.00 0.00 0.00 3.84
1632 1763 1.215647 GTCGTTGCCACCGATCTCT 59.784 57.895 0.00 0.00 36.62 3.10
1659 1790 0.249489 GCTGGCGATCGTAGAACCAT 60.249 55.000 17.81 0.00 43.58 3.55
1674 1805 3.406361 GTGTCACGACTGCGCTGG 61.406 66.667 18.98 9.22 42.48 4.85
1686 1817 3.792401 CATGAACTTATAGGGCGTGTCA 58.208 45.455 0.00 0.00 0.00 3.58
1696 1833 2.427812 TCACGTCGGGCATGAACTTATA 59.572 45.455 0.00 0.00 0.00 0.98
1699 1836 0.036388 ATCACGTCGGGCATGAACTT 60.036 50.000 0.00 0.00 0.00 2.66
1703 1840 2.104132 CGATCACGTCGGGCATGA 59.896 61.111 0.00 0.00 46.47 3.07
1737 6825 0.253327 GGTTGATCACCTCCTGGACC 59.747 60.000 0.00 0.00 43.29 4.46
1758 6846 0.321564 CAAGGATCGTCTTGGCACCA 60.322 55.000 4.31 0.00 40.14 4.17
1845 6933 2.905075 CAGCCGAATTGGTCATAGTCA 58.095 47.619 0.00 0.00 41.21 3.41
1878 6966 5.276461 TGTGCTTCTGAGAGAACTTGTTA 57.724 39.130 0.00 0.00 29.89 2.41
1883 6971 2.435805 TGGTTGTGCTTCTGAGAGAACT 59.564 45.455 0.00 0.00 29.89 3.01
1890 6978 2.418368 ACAGTTGGTTGTGCTTCTGA 57.582 45.000 0.00 0.00 0.00 3.27
1923 7011 3.072468 CGAGACCTAACCCGGCCA 61.072 66.667 2.24 0.00 0.00 5.36
1930 7018 0.391263 CCAGGGTTGCGAGACCTAAC 60.391 60.000 7.45 0.00 39.71 2.34
1966 7054 2.842256 CGGCGCCATAGTAGTCGGT 61.842 63.158 28.98 0.00 0.00 4.69
2012 7100 2.511373 GGTCGTCGATGCCATGCA 60.511 61.111 11.70 0.00 44.86 3.96
2064 7152 2.595095 CACCCATGGCCGGTGTAT 59.405 61.111 17.63 0.00 44.87 2.29
2148 7236 2.654749 TGACACTGTATGCCTTCTCG 57.345 50.000 0.00 0.00 0.00 4.04
2260 7351 3.249799 CGTGTAACAGATCTTGGTTGCAA 59.750 43.478 15.19 0.00 40.41 4.08
2280 7371 6.569179 TTTAAAATTCCAAGAAGCTAGCGT 57.431 33.333 9.55 5.81 0.00 5.07
2290 7382 7.603404 TGGTGATGCAAGATTTAAAATTCCAAG 59.397 33.333 0.00 0.00 0.00 3.61
2292 7384 7.002250 TGGTGATGCAAGATTTAAAATTCCA 57.998 32.000 0.00 0.00 0.00 3.53
2296 7388 8.070034 TGAGATGGTGATGCAAGATTTAAAAT 57.930 30.769 0.00 0.00 0.00 1.82
2301 7393 6.338146 CAATTGAGATGGTGATGCAAGATTT 58.662 36.000 0.00 0.00 0.00 2.17
2381 7487 6.257994 AGGAATTCTGAGAATGGCTATTGA 57.742 37.500 8.68 0.00 0.00 2.57
2419 7525 6.820656 CCTATTAAGCTAGCAGTATGGGAATG 59.179 42.308 18.83 0.00 35.86 2.67
2421 7527 6.082031 TCCTATTAAGCTAGCAGTATGGGAA 58.918 40.000 18.83 5.70 35.86 3.97
2562 7671 2.813908 GACTCGTTTCCGCGGCAT 60.814 61.111 23.51 0.00 0.00 4.40
2596 7705 2.539274 GCAAAAACTTTTCAGCGCATCA 59.461 40.909 11.47 0.00 0.00 3.07
2678 7817 5.243060 TGACAGGAGATAAAACGAAGAGACA 59.757 40.000 0.00 0.00 0.00 3.41
2698 7837 2.280797 GGCGAACTGGCAGTGACA 60.281 61.111 22.83 0.00 44.08 3.58
2741 7880 2.028567 GTGTTTCTCTGGAGAGGAGTGG 60.029 54.545 3.83 0.00 42.30 4.00
2743 7882 2.630580 GTGTGTTTCTCTGGAGAGGAGT 59.369 50.000 3.83 0.00 42.30 3.85
2825 7964 3.142838 CCGCAAAGCTGGGATGGG 61.143 66.667 0.00 0.00 37.70 4.00
2857 7996 3.433598 GGTTTCAGATGCCTACTATGCCA 60.434 47.826 0.00 0.00 0.00 4.92
2880 8019 2.557056 CGTACAGGACTCAAAGAGGTGA 59.443 50.000 0.00 0.00 33.35 4.02
2970 8109 0.669318 GAAGTGATCGTTGGCGTCCA 60.669 55.000 0.00 0.00 39.49 4.02
2978 8117 0.682852 TCGTTGGGGAAGTGATCGTT 59.317 50.000 0.00 0.00 0.00 3.85
3014 8153 1.168407 TCGTCGAAGAGGTTGTCGGT 61.168 55.000 0.00 0.00 43.64 4.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.