Multiple sequence alignment - TraesCS7A01G499600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G499600 chr7A 100.000 7918 0 0 1 7918 689926980 689919063 0.000000e+00 14622.0
1 TraesCS7A01G499600 chr7D 93.602 4361 248 16 2761 7102 596710418 596706070 0.000000e+00 6479.0
2 TraesCS7A01G499600 chr7D 94.457 1281 39 4 884 2138 596711735 596710461 0.000000e+00 1943.0
3 TraesCS7A01G499600 chr7D 89.568 671 56 10 1 665 153293614 153294276 0.000000e+00 839.0
4 TraesCS7A01G499600 chr7D 88.341 669 65 8 1 665 494671736 494672395 0.000000e+00 791.0
5 TraesCS7A01G499600 chr7D 97.149 456 12 1 5059 5514 596717681 596717227 0.000000e+00 769.0
6 TraesCS7A01G499600 chr7D 96.850 381 7 4 7508 7886 596705851 596705474 4.030000e-177 632.0
7 TraesCS7A01G499600 chr7D 94.643 168 8 1 7110 7276 596706010 596705843 7.880000e-65 259.0
8 TraesCS7A01G499600 chr7D 97.015 67 2 0 1643 1709 596712049 596712115 6.490000e-21 113.0
9 TraesCS7A01G499600 chr7D 100.000 33 0 0 7095 7127 596706054 596706022 2.390000e-05 62.1
10 TraesCS7A01G499600 chr7B 92.792 4356 272 19 2674 7006 675317799 675313463 0.000000e+00 6266.0
11 TraesCS7A01G499600 chr7B 92.470 1182 42 4 977 2138 675319510 675318356 0.000000e+00 1646.0
12 TraesCS7A01G499600 chr7B 94.146 410 13 6 7107 7505 675313404 675312995 1.460000e-171 614.0
13 TraesCS7A01G499600 chr7B 87.179 429 14 14 2288 2675 675318364 675317936 4.360000e-122 449.0
14 TraesCS7A01G499600 chr7B 92.958 142 7 2 748 887 675319751 675319611 3.750000e-48 204.0
15 TraesCS7A01G499600 chr7B 85.000 80 1 4 884 963 675319576 675319508 3.960000e-08 71.3
16 TraesCS7A01G499600 chr4D 90.691 666 51 5 1 665 37497452 37496797 0.000000e+00 876.0
17 TraesCS7A01G499600 chr3A 89.985 669 59 6 1 665 649636963 649636299 0.000000e+00 857.0
18 TraesCS7A01G499600 chr6D 89.940 666 58 4 1 665 156574602 156573945 0.000000e+00 850.0
19 TraesCS7A01G499600 chr6D 88.868 521 40 9 4 520 312686043 312685537 6.750000e-175 625.0
20 TraesCS7A01G499600 chr1D 88.064 687 58 16 1 665 63917920 63917236 0.000000e+00 793.0
21 TraesCS7A01G499600 chr1D 78.814 236 44 5 3719 3952 405099389 405099158 3.830000e-33 154.0
22 TraesCS7A01G499600 chr4B 85.799 676 83 9 1 665 63929120 63929793 0.000000e+00 704.0
23 TraesCS7A01G499600 chr4B 100.000 32 0 0 4037 4068 639292344 639292375 8.580000e-05 60.2
24 TraesCS7A01G499600 chr6A 85.821 670 71 16 1 665 473048877 473048227 0.000000e+00 689.0
25 TraesCS7A01G499600 chr5A 85.544 671 73 13 1 664 92212885 92212232 0.000000e+00 680.0
26 TraesCS7A01G499600 chr3B 85.163 674 79 14 1 665 677611129 677611790 0.000000e+00 671.0
27 TraesCS7A01G499600 chr3B 100.000 31 0 0 4038 4068 628726214 628726184 3.090000e-04 58.4
28 TraesCS7A01G499600 chr4A 89.773 528 39 10 1 523 455921153 455921670 0.000000e+00 662.0
29 TraesCS7A01G499600 chr3D 88.179 313 29 2 347 659 39162252 39161948 4.510000e-97 366.0
30 TraesCS7A01G499600 chr2D 79.264 299 50 5 4204 4490 584780206 584780504 1.740000e-46 198.0
31 TraesCS7A01G499600 chr1A 76.974 304 61 8 3648 3947 547734978 547734680 1.770000e-36 165.0
32 TraesCS7A01G499600 chr1A 100.000 31 0 0 4038 4068 430013481 430013451 3.090000e-04 58.4
33 TraesCS7A01G499600 chr5D 77.027 222 40 10 4127 4344 130460413 130460199 5.020000e-22 117.0
34 TraesCS7A01G499600 chr5D 83.486 109 16 1 3843 3949 3578135 3578243 5.060000e-17 100.0
35 TraesCS7A01G499600 chr2B 88.172 93 11 0 3859 3951 704954017 704954109 2.340000e-20 111.0
36 TraesCS7A01G499600 chr2B 100.000 31 0 0 4038 4068 15713519 15713549 3.090000e-04 58.4
37 TraesCS7A01G499600 chr2B 100.000 31 0 0 4038 4068 15777104 15777134 3.090000e-04 58.4
38 TraesCS7A01G499600 chr2B 100.000 31 0 0 4038 4068 15849712 15849742 3.090000e-04 58.4
39 TraesCS7A01G499600 chr2B 100.000 31 0 0 4038 4068 15948326 15948356 3.090000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G499600 chr7A 689919063 689926980 7917 True 14622.000000 14622 100.0000 1 7918 1 chr7A.!!$R1 7917
1 TraesCS7A01G499600 chr7D 596705474 596711735 6261 True 1875.020000 6479 95.9104 884 7886 5 chr7D.!!$R2 7002
2 TraesCS7A01G499600 chr7D 153293614 153294276 662 False 839.000000 839 89.5680 1 665 1 chr7D.!!$F1 664
3 TraesCS7A01G499600 chr7D 494671736 494672395 659 False 791.000000 791 88.3410 1 665 1 chr7D.!!$F2 664
4 TraesCS7A01G499600 chr7B 675312995 675319751 6756 True 1541.716667 6266 90.7575 748 7505 6 chr7B.!!$R1 6757
5 TraesCS7A01G499600 chr4D 37496797 37497452 655 True 876.000000 876 90.6910 1 665 1 chr4D.!!$R1 664
6 TraesCS7A01G499600 chr3A 649636299 649636963 664 True 857.000000 857 89.9850 1 665 1 chr3A.!!$R1 664
7 TraesCS7A01G499600 chr6D 156573945 156574602 657 True 850.000000 850 89.9400 1 665 1 chr6D.!!$R1 664
8 TraesCS7A01G499600 chr6D 312685537 312686043 506 True 625.000000 625 88.8680 4 520 1 chr6D.!!$R2 516
9 TraesCS7A01G499600 chr1D 63917236 63917920 684 True 793.000000 793 88.0640 1 665 1 chr1D.!!$R1 664
10 TraesCS7A01G499600 chr4B 63929120 63929793 673 False 704.000000 704 85.7990 1 665 1 chr4B.!!$F1 664
11 TraesCS7A01G499600 chr6A 473048227 473048877 650 True 689.000000 689 85.8210 1 665 1 chr6A.!!$R1 664
12 TraesCS7A01G499600 chr5A 92212232 92212885 653 True 680.000000 680 85.5440 1 664 1 chr5A.!!$R1 663
13 TraesCS7A01G499600 chr3B 677611129 677611790 661 False 671.000000 671 85.1630 1 665 1 chr3B.!!$F1 664
14 TraesCS7A01G499600 chr4A 455921153 455921670 517 False 662.000000 662 89.7730 1 523 1 chr4A.!!$F1 522

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
732 784 0.032952 AGACGCTGTTAACGGAGCAA 59.967 50.000 18.81 0.00 34.69 3.91 F
2168 2296 0.102300 AGGTTTGTCAAACTTGCGGC 59.898 50.000 24.02 9.53 41.14 6.53 F
3062 3372 0.031178 CAAAGTCCACAGCCTGCAAC 59.969 55.000 0.00 0.00 0.00 4.17 F
3063 3373 0.395586 AAAGTCCACAGCCTGCAACA 60.396 50.000 0.00 0.00 0.00 3.33 F
3357 3677 1.006571 GTCTTTCCACGCCGTGAGA 60.007 57.895 20.57 11.01 35.23 3.27 F
5134 5471 1.066787 TCGGGTGCGACATTCAATACA 60.067 47.619 0.00 0.00 0.00 2.29 F
5883 6220 0.031994 GGCACGTTTGATTGTTGGCT 59.968 50.000 0.00 0.00 0.00 4.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2196 2324 0.031857 TTGTTTTCACTGGCGCCATG 59.968 50.000 32.87 27.57 0.00 3.66 R
3342 3662 0.174845 CCTATCTCACGGCGTGGAAA 59.825 55.000 36.30 23.02 33.87 3.13 R
3937 4259 1.252904 GGGACCGTGCAGTACCACTA 61.253 60.000 2.44 0.00 40.89 2.74 R
4395 4727 1.298788 CGCGGACACAAACCCAAAC 60.299 57.895 0.00 0.00 0.00 2.93 R
5279 5616 4.437239 CTTCAGAAATCCATCTGCGTACT 58.563 43.478 0.00 0.00 45.21 2.73 R
5968 6305 0.108804 TAGTTTGCCGAGCTCTTCCG 60.109 55.000 12.85 0.00 0.00 4.30 R
7871 8276 1.366854 GGCGAACTTGGGATCCGTTC 61.367 60.000 16.78 16.78 35.04 3.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
72 73 3.639094 GCAAGAGAGTGCTAGGAAGGATA 59.361 47.826 0.00 0.00 41.51 2.59
132 134 4.307432 CATCGTTCGGTTCCTGCTAATAT 58.693 43.478 0.00 0.00 0.00 1.28
276 278 3.305181 TGCCTGAGCATGGAGTAGA 57.695 52.632 0.00 0.00 46.52 2.59
277 279 1.571955 TGCCTGAGCATGGAGTAGAA 58.428 50.000 0.00 0.00 46.52 2.10
297 299 4.096382 AGAAGCAACGTTTGAACAGTTCAT 59.904 37.500 16.89 0.00 39.84 2.57
372 376 8.413309 AATGATTTGATTGAGTATATGTGGGG 57.587 34.615 0.00 0.00 0.00 4.96
387 391 2.635443 GGGGTCATGTTGGCAACCG 61.635 63.158 26.31 17.62 32.34 4.44
425 430 9.737427 TTCTTTTATTCGTTTGCAAAACTATGA 57.263 25.926 14.67 0.00 0.00 2.15
426 431 9.737427 TCTTTTATTCGTTTGCAAAACTATGAA 57.263 25.926 14.67 9.60 0.00 2.57
546 597 1.136828 AATATTGGGTAGCCAGCCGA 58.863 50.000 14.38 0.00 45.92 5.54
665 717 1.520564 CGGACGAAATCGCCATCCA 60.521 57.895 2.15 0.00 44.43 3.41
666 718 1.762222 CGGACGAAATCGCCATCCAC 61.762 60.000 2.15 0.00 44.43 4.02
667 719 0.742990 GGACGAAATCGCCATCCACA 60.743 55.000 2.15 0.00 44.43 4.17
668 720 1.083489 GACGAAATCGCCATCCACAA 58.917 50.000 2.15 0.00 44.43 3.33
669 721 0.802494 ACGAAATCGCCATCCACAAC 59.198 50.000 2.15 0.00 44.43 3.32
670 722 0.247655 CGAAATCGCCATCCACAACG 60.248 55.000 0.00 0.00 0.00 4.10
671 723 1.083489 GAAATCGCCATCCACAACGA 58.917 50.000 0.00 0.00 39.11 3.85
672 724 0.802494 AAATCGCCATCCACAACGAC 59.198 50.000 0.00 0.00 37.37 4.34
673 725 1.024579 AATCGCCATCCACAACGACC 61.025 55.000 0.00 0.00 37.37 4.79
674 726 1.899437 ATCGCCATCCACAACGACCT 61.899 55.000 0.00 0.00 37.37 3.85
675 727 1.216977 CGCCATCCACAACGACCTA 59.783 57.895 0.00 0.00 0.00 3.08
676 728 0.390603 CGCCATCCACAACGACCTAA 60.391 55.000 0.00 0.00 0.00 2.69
677 729 1.816074 GCCATCCACAACGACCTAAA 58.184 50.000 0.00 0.00 0.00 1.85
678 730 1.467342 GCCATCCACAACGACCTAAAC 59.533 52.381 0.00 0.00 0.00 2.01
679 731 2.773487 CCATCCACAACGACCTAAACA 58.227 47.619 0.00 0.00 0.00 2.83
680 732 3.142951 CCATCCACAACGACCTAAACAA 58.857 45.455 0.00 0.00 0.00 2.83
681 733 3.566322 CCATCCACAACGACCTAAACAAA 59.434 43.478 0.00 0.00 0.00 2.83
682 734 4.217550 CCATCCACAACGACCTAAACAAAT 59.782 41.667 0.00 0.00 0.00 2.32
683 735 4.822036 TCCACAACGACCTAAACAAATG 57.178 40.909 0.00 0.00 0.00 2.32
684 736 3.003897 TCCACAACGACCTAAACAAATGC 59.996 43.478 0.00 0.00 0.00 3.56
685 737 2.970609 CACAACGACCTAAACAAATGCG 59.029 45.455 0.00 0.00 0.00 4.73
686 738 2.031508 ACAACGACCTAAACAAATGCGG 60.032 45.455 0.00 0.00 0.00 5.69
687 739 1.161843 ACGACCTAAACAAATGCGGG 58.838 50.000 0.00 0.00 0.00 6.13
688 740 0.179174 CGACCTAAACAAATGCGGGC 60.179 55.000 0.00 0.00 0.00 6.13
689 741 0.885196 GACCTAAACAAATGCGGGCA 59.115 50.000 0.00 0.00 0.00 5.36
690 742 0.887933 ACCTAAACAAATGCGGGCAG 59.112 50.000 0.00 0.00 0.00 4.85
691 743 1.173043 CCTAAACAAATGCGGGCAGA 58.827 50.000 0.00 0.00 0.00 4.26
692 744 1.750778 CCTAAACAAATGCGGGCAGAT 59.249 47.619 0.00 0.00 0.00 2.90
693 745 2.480073 CCTAAACAAATGCGGGCAGATG 60.480 50.000 0.00 3.40 0.00 2.90
694 746 1.255882 AAACAAATGCGGGCAGATGA 58.744 45.000 13.34 0.00 0.00 2.92
695 747 1.255882 AACAAATGCGGGCAGATGAA 58.744 45.000 13.34 0.00 0.00 2.57
696 748 1.255882 ACAAATGCGGGCAGATGAAA 58.744 45.000 13.34 0.00 0.00 2.69
697 749 1.826720 ACAAATGCGGGCAGATGAAAT 59.173 42.857 13.34 0.00 0.00 2.17
698 750 2.198406 CAAATGCGGGCAGATGAAATG 58.802 47.619 0.00 0.00 0.00 2.32
699 751 1.477553 AATGCGGGCAGATGAAATGT 58.522 45.000 0.00 0.00 0.00 2.71
700 752 2.346766 ATGCGGGCAGATGAAATGTA 57.653 45.000 0.00 0.00 0.00 2.29
701 753 2.346766 TGCGGGCAGATGAAATGTAT 57.653 45.000 0.00 0.00 0.00 2.29
702 754 2.221169 TGCGGGCAGATGAAATGTATC 58.779 47.619 0.00 0.00 0.00 2.24
703 755 1.195448 GCGGGCAGATGAAATGTATCG 59.805 52.381 0.00 0.00 0.00 2.92
704 756 1.195448 CGGGCAGATGAAATGTATCGC 59.805 52.381 0.00 0.00 0.00 4.58
705 757 2.498167 GGGCAGATGAAATGTATCGCT 58.502 47.619 0.00 0.00 0.00 4.93
706 758 2.225019 GGGCAGATGAAATGTATCGCTG 59.775 50.000 0.00 0.00 0.00 5.18
707 759 2.350197 GGCAGATGAAATGTATCGCTGC 60.350 50.000 0.00 0.00 43.66 5.25
708 760 2.661169 GCAGATGAAATGTATCGCTGCG 60.661 50.000 17.25 17.25 39.15 5.18
709 761 2.541346 CAGATGAAATGTATCGCTGCGT 59.459 45.455 22.48 11.78 0.00 5.24
710 762 3.001634 CAGATGAAATGTATCGCTGCGTT 59.998 43.478 22.48 16.36 0.00 4.84
711 763 2.804421 TGAAATGTATCGCTGCGTTG 57.196 45.000 22.48 0.00 0.00 4.10
712 764 1.396648 TGAAATGTATCGCTGCGTTGG 59.603 47.619 22.48 0.00 0.00 3.77
713 765 1.663643 GAAATGTATCGCTGCGTTGGA 59.336 47.619 22.48 2.28 0.00 3.53
714 766 1.290203 AATGTATCGCTGCGTTGGAG 58.710 50.000 22.48 0.00 0.00 3.86
715 767 0.459899 ATGTATCGCTGCGTTGGAGA 59.540 50.000 22.48 1.00 0.00 3.71
716 768 0.457853 TGTATCGCTGCGTTGGAGAC 60.458 55.000 22.48 10.43 0.00 3.36
726 778 0.433492 CGTTGGAGACGCTGTTAACG 59.567 55.000 0.26 0.00 45.86 3.18
727 779 0.788391 GTTGGAGACGCTGTTAACGG 59.212 55.000 10.24 10.24 34.00 4.44
728 780 0.675083 TTGGAGACGCTGTTAACGGA 59.325 50.000 18.81 0.00 34.00 4.69
729 781 0.242825 TGGAGACGCTGTTAACGGAG 59.757 55.000 18.81 17.16 34.00 4.63
730 782 1.077089 GGAGACGCTGTTAACGGAGC 61.077 60.000 18.81 12.73 34.00 4.70
731 783 0.388134 GAGACGCTGTTAACGGAGCA 60.388 55.000 18.81 0.00 34.69 4.26
732 784 0.032952 AGACGCTGTTAACGGAGCAA 59.967 50.000 18.81 0.00 34.69 3.91
733 785 0.863144 GACGCTGTTAACGGAGCAAA 59.137 50.000 18.81 0.00 34.69 3.68
734 786 0.865769 ACGCTGTTAACGGAGCAAAG 59.134 50.000 18.81 4.51 34.69 2.77
735 787 0.865769 CGCTGTTAACGGAGCAAAGT 59.134 50.000 18.81 0.00 34.69 2.66
736 788 1.136336 CGCTGTTAACGGAGCAAAGTC 60.136 52.381 18.81 0.00 34.69 3.01
737 789 1.136336 GCTGTTAACGGAGCAAAGTCG 60.136 52.381 18.81 0.00 35.15 4.18
738 790 2.132762 CTGTTAACGGAGCAAAGTCGT 58.867 47.619 8.90 0.00 38.89 4.34
739 791 2.542595 CTGTTAACGGAGCAAAGTCGTT 59.457 45.455 8.90 0.00 46.66 3.85
740 792 2.285756 TGTTAACGGAGCAAAGTCGTTG 59.714 45.455 10.04 0.00 45.04 4.10
741 793 1.504359 TAACGGAGCAAAGTCGTTGG 58.496 50.000 10.04 0.00 45.04 3.77
782 834 2.758648 TGCTGAGGCAAGTAGTGGA 58.241 52.632 0.00 0.00 46.36 4.02
783 835 0.321671 TGCTGAGGCAAGTAGTGGAC 59.678 55.000 0.00 0.00 46.36 4.02
799 853 4.142790 AGTGGACGAGACTGTAGAAAGAA 58.857 43.478 0.00 0.00 0.00 2.52
855 909 0.183492 TGTCCCTGCAAAGCTGTCTT 59.817 50.000 0.00 0.00 0.00 3.01
875 929 3.878160 TCGTGCTGTATACCATGTGAA 57.122 42.857 0.00 0.00 0.00 3.18
878 932 3.182372 CGTGCTGTATACCATGTGAATCG 59.818 47.826 0.00 0.00 0.00 3.34
968 1070 1.774110 AGCCCAAATCAACACACACA 58.226 45.000 0.00 0.00 0.00 3.72
969 1071 1.408702 AGCCCAAATCAACACACACAC 59.591 47.619 0.00 0.00 0.00 3.82
970 1072 1.135915 GCCCAAATCAACACACACACA 59.864 47.619 0.00 0.00 0.00 3.72
971 1073 2.808244 CCCAAATCAACACACACACAC 58.192 47.619 0.00 0.00 0.00 3.82
972 1074 2.165234 CCCAAATCAACACACACACACA 59.835 45.455 0.00 0.00 0.00 3.72
973 1075 3.178267 CCAAATCAACACACACACACAC 58.822 45.455 0.00 0.00 0.00 3.82
974 1076 3.366781 CCAAATCAACACACACACACACA 60.367 43.478 0.00 0.00 0.00 3.72
975 1077 3.485947 AATCAACACACACACACACAC 57.514 42.857 0.00 0.00 0.00 3.82
976 1078 1.884235 TCAACACACACACACACACA 58.116 45.000 0.00 0.00 0.00 3.72
977 1079 1.533299 TCAACACACACACACACACAC 59.467 47.619 0.00 0.00 0.00 3.82
978 1080 1.265365 CAACACACACACACACACACA 59.735 47.619 0.00 0.00 0.00 3.72
979 1081 1.155889 ACACACACACACACACACAG 58.844 50.000 0.00 0.00 0.00 3.66
980 1082 1.270571 ACACACACACACACACACAGA 60.271 47.619 0.00 0.00 0.00 3.41
981 1083 1.394572 CACACACACACACACACAGAG 59.605 52.381 0.00 0.00 0.00 3.35
982 1084 1.275010 ACACACACACACACACAGAGA 59.725 47.619 0.00 0.00 0.00 3.10
983 1085 2.093500 ACACACACACACACACAGAGAT 60.093 45.455 0.00 0.00 0.00 2.75
984 1086 3.132111 ACACACACACACACACAGAGATA 59.868 43.478 0.00 0.00 0.00 1.98
985 1087 3.737774 CACACACACACACACAGAGATAG 59.262 47.826 0.00 0.00 0.00 2.08
986 1088 3.636764 ACACACACACACACAGAGATAGA 59.363 43.478 0.00 0.00 0.00 1.98
987 1089 4.233005 CACACACACACACAGAGATAGAG 58.767 47.826 0.00 0.00 0.00 2.43
988 1090 4.022849 CACACACACACACAGAGATAGAGA 60.023 45.833 0.00 0.00 0.00 3.10
989 1091 4.217334 ACACACACACACAGAGATAGAGAG 59.783 45.833 0.00 0.00 0.00 3.20
990 1092 3.192422 ACACACACACAGAGATAGAGAGC 59.808 47.826 0.00 0.00 0.00 4.09
1007 1109 2.879907 CAGAGCAACAATGGCGGG 59.120 61.111 0.00 0.00 36.08 6.13
1050 1152 1.076705 GGCAATGGGTTCCCTCCTC 60.077 63.158 9.43 0.00 0.00 3.71
1074 1176 3.559171 GGAAGTTGGGAGCTATGTTGACA 60.559 47.826 0.00 0.00 0.00 3.58
1171 1273 4.692228 GTTCCTCCTCAAGATGTCAGATC 58.308 47.826 0.00 0.00 0.00 2.75
1230 1332 1.442148 GGTGCGGGAGATGTCCTAC 59.558 63.158 9.08 5.98 43.36 3.18
1287 1395 1.079750 GGAACACGAGTCCTCCTGC 60.080 63.158 0.00 0.00 0.00 4.85
1396 1504 6.874288 AGAAGGTCAAAGACATCAAGAAAG 57.126 37.500 0.00 0.00 33.68 2.62
1424 1532 3.679389 AGGATGTCAGCGACAGATTTTT 58.321 40.909 14.80 0.28 46.04 1.94
1544 1652 4.386049 CACTCAAGGTACAAGATTGACGAC 59.614 45.833 0.00 0.00 0.00 4.34
1679 1787 2.641305 CTGAATGAGAAAGAGGGCCAG 58.359 52.381 6.18 0.00 0.00 4.85
1932 2040 6.443849 AGAATTCCTCCAAGACACAAGGTATA 59.556 38.462 0.65 0.00 0.00 1.47
1994 2122 8.193438 GCCTAGAATTTTGCTAATGAAGATTGT 58.807 33.333 0.00 0.00 0.00 2.71
2056 2184 7.616673 TGCGTTTAAAATTTGAAGTCATTGTG 58.383 30.769 0.00 0.00 0.00 3.33
2058 2186 7.787480 GCGTTTAAAATTTGAAGTCATTGTGTC 59.213 33.333 0.00 0.00 0.00 3.67
2086 2214 6.020281 GCAACTTATGTCGATCTGTTCACTAG 60.020 42.308 0.00 0.00 0.00 2.57
2111 2239 9.579768 AGAAGATATAGCTAAAATCTGTATGCG 57.420 33.333 17.96 0.00 30.50 4.73
2129 2257 1.971167 GGATTTCTGGCGCCACACA 60.971 57.895 29.03 9.60 0.00 3.72
2130 2258 1.315257 GGATTTCTGGCGCCACACAT 61.315 55.000 29.03 15.17 0.00 3.21
2131 2259 0.527565 GATTTCTGGCGCCACACATT 59.472 50.000 29.03 9.65 0.00 2.71
2132 2260 0.968405 ATTTCTGGCGCCACACATTT 59.032 45.000 29.03 5.45 0.00 2.32
2133 2261 0.749649 TTTCTGGCGCCACACATTTT 59.250 45.000 29.03 0.00 0.00 1.82
2134 2262 0.313672 TTCTGGCGCCACACATTTTC 59.686 50.000 29.03 0.00 0.00 2.29
2135 2263 0.537143 TCTGGCGCCACACATTTTCT 60.537 50.000 29.03 0.00 0.00 2.52
2136 2264 1.164411 CTGGCGCCACACATTTTCTA 58.836 50.000 29.03 0.00 0.00 2.10
2137 2265 1.539388 CTGGCGCCACACATTTTCTAA 59.461 47.619 29.03 0.00 0.00 2.10
2138 2266 2.164219 CTGGCGCCACACATTTTCTAAT 59.836 45.455 29.03 0.00 0.00 1.73
2139 2267 2.560542 TGGCGCCACACATTTTCTAATT 59.439 40.909 29.03 0.00 0.00 1.40
2140 2268 2.923020 GGCGCCACACATTTTCTAATTG 59.077 45.455 24.80 0.00 0.00 2.32
2141 2269 3.366883 GGCGCCACACATTTTCTAATTGA 60.367 43.478 24.80 0.00 0.00 2.57
2142 2270 4.423732 GCGCCACACATTTTCTAATTGAT 58.576 39.130 0.00 0.00 0.00 2.57
2143 2271 4.864247 GCGCCACACATTTTCTAATTGATT 59.136 37.500 0.00 0.00 0.00 2.57
2144 2272 5.220265 GCGCCACACATTTTCTAATTGATTG 60.220 40.000 0.00 0.00 0.00 2.67
2145 2273 5.220265 CGCCACACATTTTCTAATTGATTGC 60.220 40.000 0.00 0.00 0.00 3.56
2146 2274 5.063817 GCCACACATTTTCTAATTGATTGCC 59.936 40.000 0.00 0.00 0.00 4.52
2147 2275 6.164876 CCACACATTTTCTAATTGATTGCCA 58.835 36.000 0.00 0.00 0.00 4.92
2148 2276 6.091169 CCACACATTTTCTAATTGATTGCCAC 59.909 38.462 0.00 0.00 0.00 5.01
2149 2277 6.645827 CACACATTTTCTAATTGATTGCCACA 59.354 34.615 0.00 0.00 0.00 4.17
2150 2278 6.869913 ACACATTTTCTAATTGATTGCCACAG 59.130 34.615 0.00 0.00 0.00 3.66
2151 2279 6.311935 CACATTTTCTAATTGATTGCCACAGG 59.688 38.462 0.00 0.00 0.00 4.00
2152 2280 6.014327 ACATTTTCTAATTGATTGCCACAGGT 60.014 34.615 0.00 0.00 0.00 4.00
2153 2281 6.418057 TTTTCTAATTGATTGCCACAGGTT 57.582 33.333 0.00 0.00 0.00 3.50
2154 2282 6.418057 TTTCTAATTGATTGCCACAGGTTT 57.582 33.333 0.00 0.00 0.00 3.27
2155 2283 5.389859 TCTAATTGATTGCCACAGGTTTG 57.610 39.130 0.00 0.00 0.00 2.93
2156 2284 4.832266 TCTAATTGATTGCCACAGGTTTGT 59.168 37.500 0.00 0.00 38.31 2.83
2157 2285 3.665745 ATTGATTGCCACAGGTTTGTC 57.334 42.857 0.00 0.00 34.62 3.18
2158 2286 2.064434 TGATTGCCACAGGTTTGTCA 57.936 45.000 0.00 0.00 34.62 3.58
2159 2287 2.382882 TGATTGCCACAGGTTTGTCAA 58.617 42.857 0.00 0.00 34.62 3.18
2160 2288 2.762887 TGATTGCCACAGGTTTGTCAAA 59.237 40.909 0.00 0.00 34.62 2.69
2161 2289 2.663826 TTGCCACAGGTTTGTCAAAC 57.336 45.000 18.43 18.43 40.65 2.93
2162 2290 1.846007 TGCCACAGGTTTGTCAAACT 58.154 45.000 24.02 10.49 41.14 2.66
2163 2291 2.175202 TGCCACAGGTTTGTCAAACTT 58.825 42.857 24.02 16.40 41.14 2.66
2167 2295 1.838913 CAGGTTTGTCAAACTTGCGG 58.161 50.000 22.82 7.92 40.76 5.69
2168 2296 0.102300 AGGTTTGTCAAACTTGCGGC 59.898 50.000 24.02 9.53 41.14 6.53
2169 2297 0.102300 GGTTTGTCAAACTTGCGGCT 59.898 50.000 24.02 0.00 41.14 5.52
2170 2298 1.335496 GGTTTGTCAAACTTGCGGCTA 59.665 47.619 24.02 0.00 41.14 3.93
2171 2299 2.030274 GGTTTGTCAAACTTGCGGCTAT 60.030 45.455 24.02 0.00 41.14 2.97
2172 2300 2.979813 GTTTGTCAAACTTGCGGCTATG 59.020 45.455 19.19 0.00 38.35 2.23
2173 2301 1.890876 TGTCAAACTTGCGGCTATGT 58.109 45.000 0.00 0.00 0.00 2.29
2174 2302 2.226330 TGTCAAACTTGCGGCTATGTT 58.774 42.857 0.00 0.85 0.00 2.71
2175 2303 2.225491 TGTCAAACTTGCGGCTATGTTC 59.775 45.455 0.00 0.00 0.00 3.18
2176 2304 2.484264 GTCAAACTTGCGGCTATGTTCT 59.516 45.455 0.00 0.00 0.00 3.01
2177 2305 2.483877 TCAAACTTGCGGCTATGTTCTG 59.516 45.455 0.00 5.67 0.00 3.02
2178 2306 2.185004 AACTTGCGGCTATGTTCTGT 57.815 45.000 0.00 0.00 0.00 3.41
2179 2307 2.185004 ACTTGCGGCTATGTTCTGTT 57.815 45.000 0.00 0.00 0.00 3.16
2180 2308 2.504367 ACTTGCGGCTATGTTCTGTTT 58.496 42.857 0.00 0.00 0.00 2.83
2181 2309 3.670625 ACTTGCGGCTATGTTCTGTTTA 58.329 40.909 0.00 0.00 0.00 2.01
2182 2310 4.261801 ACTTGCGGCTATGTTCTGTTTAT 58.738 39.130 0.00 0.00 0.00 1.40
2183 2311 4.700213 ACTTGCGGCTATGTTCTGTTTATT 59.300 37.500 0.00 0.00 0.00 1.40
2184 2312 5.878116 ACTTGCGGCTATGTTCTGTTTATTA 59.122 36.000 0.00 0.00 0.00 0.98
2185 2313 6.373216 ACTTGCGGCTATGTTCTGTTTATTAA 59.627 34.615 0.00 0.00 0.00 1.40
2186 2314 6.745159 TGCGGCTATGTTCTGTTTATTAAA 57.255 33.333 0.00 0.00 0.00 1.52
2187 2315 7.328277 TGCGGCTATGTTCTGTTTATTAAAT 57.672 32.000 0.00 0.00 0.00 1.40
2188 2316 8.439993 TGCGGCTATGTTCTGTTTATTAAATA 57.560 30.769 0.00 0.00 0.00 1.40
2189 2317 8.894731 TGCGGCTATGTTCTGTTTATTAAATAA 58.105 29.630 0.00 0.00 0.00 1.40
2190 2318 9.893305 GCGGCTATGTTCTGTTTATTAAATAAT 57.107 29.630 0.00 0.00 0.00 1.28
2202 2330 9.295214 TGTTTATTAAATAATTGTGACATGGCG 57.705 29.630 0.00 0.00 0.00 5.69
2203 2331 7.922505 TTATTAAATAATTGTGACATGGCGC 57.077 32.000 4.75 4.75 0.00 6.53
2204 2332 2.869233 AATAATTGTGACATGGCGCC 57.131 45.000 22.73 22.73 0.00 6.53
2205 2333 1.761449 ATAATTGTGACATGGCGCCA 58.239 45.000 34.80 34.80 0.00 5.69
2206 2334 1.093972 TAATTGTGACATGGCGCCAG 58.906 50.000 35.36 26.66 0.00 4.85
2207 2335 0.895100 AATTGTGACATGGCGCCAGT 60.895 50.000 35.36 29.58 0.00 4.00
2208 2336 1.588824 ATTGTGACATGGCGCCAGTG 61.589 55.000 35.36 30.29 0.00 3.66
2209 2337 2.358615 GTGACATGGCGCCAGTGA 60.359 61.111 35.36 22.66 0.00 3.41
2210 2338 1.965930 GTGACATGGCGCCAGTGAA 60.966 57.895 35.36 17.62 0.00 3.18
2211 2339 1.228094 TGACATGGCGCCAGTGAAA 60.228 52.632 35.36 20.28 0.00 2.69
2212 2340 0.821301 TGACATGGCGCCAGTGAAAA 60.821 50.000 35.36 14.94 0.00 2.29
2213 2341 0.387239 GACATGGCGCCAGTGAAAAC 60.387 55.000 35.36 16.59 0.00 2.43
2214 2342 1.106351 ACATGGCGCCAGTGAAAACA 61.106 50.000 35.36 7.66 0.00 2.83
2215 2343 0.031857 CATGGCGCCAGTGAAAACAA 59.968 50.000 35.36 6.78 0.00 2.83
2216 2344 0.968405 ATGGCGCCAGTGAAAACAAT 59.032 45.000 35.36 11.04 0.00 2.71
2217 2345 1.610363 TGGCGCCAGTGAAAACAATA 58.390 45.000 29.03 0.00 0.00 1.90
2218 2346 1.539388 TGGCGCCAGTGAAAACAATAG 59.461 47.619 29.03 0.00 0.00 1.73
2219 2347 1.810151 GGCGCCAGTGAAAACAATAGA 59.190 47.619 24.80 0.00 0.00 1.98
2220 2348 2.414161 GGCGCCAGTGAAAACAATAGAC 60.414 50.000 24.80 0.00 0.00 2.59
2221 2349 2.484264 GCGCCAGTGAAAACAATAGACT 59.516 45.455 0.00 0.00 0.00 3.24
2222 2350 3.682858 GCGCCAGTGAAAACAATAGACTA 59.317 43.478 0.00 0.00 0.00 2.59
2223 2351 4.435651 GCGCCAGTGAAAACAATAGACTAC 60.436 45.833 0.00 0.00 0.00 2.73
2224 2352 4.688879 CGCCAGTGAAAACAATAGACTACA 59.311 41.667 0.00 0.00 0.00 2.74
2225 2353 5.351465 CGCCAGTGAAAACAATAGACTACAT 59.649 40.000 0.00 0.00 0.00 2.29
2226 2354 6.546395 GCCAGTGAAAACAATAGACTACATG 58.454 40.000 0.00 0.00 0.00 3.21
2227 2355 6.546395 CCAGTGAAAACAATAGACTACATGC 58.454 40.000 0.00 0.00 0.00 4.06
2228 2356 6.149308 CCAGTGAAAACAATAGACTACATGCA 59.851 38.462 0.00 0.00 0.00 3.96
2229 2357 7.308529 CCAGTGAAAACAATAGACTACATGCAA 60.309 37.037 0.00 0.00 0.00 4.08
2230 2358 8.239314 CAGTGAAAACAATAGACTACATGCAAT 58.761 33.333 0.00 0.00 0.00 3.56
2231 2359 8.796475 AGTGAAAACAATAGACTACATGCAATT 58.204 29.630 0.00 0.00 0.00 2.32
2232 2360 9.065871 GTGAAAACAATAGACTACATGCAATTC 57.934 33.333 0.00 0.00 0.00 2.17
2233 2361 8.243426 TGAAAACAATAGACTACATGCAATTCC 58.757 33.333 0.00 0.00 0.00 3.01
2234 2362 6.699575 AACAATAGACTACATGCAATTCCC 57.300 37.500 0.00 0.00 0.00 3.97
2235 2363 6.006275 ACAATAGACTACATGCAATTCCCT 57.994 37.500 0.00 0.00 0.00 4.20
2236 2364 6.426587 ACAATAGACTACATGCAATTCCCTT 58.573 36.000 0.00 0.00 0.00 3.95
2237 2365 6.891908 ACAATAGACTACATGCAATTCCCTTT 59.108 34.615 0.00 0.00 0.00 3.11
2238 2366 7.397192 ACAATAGACTACATGCAATTCCCTTTT 59.603 33.333 0.00 0.00 0.00 2.27
2239 2367 7.961326 ATAGACTACATGCAATTCCCTTTTT 57.039 32.000 0.00 0.00 0.00 1.94
2261 2389 6.517914 TTTTTCACAAACAAATATCCGCAC 57.482 33.333 0.00 0.00 0.00 5.34
2262 2390 3.463533 TCACAAACAAATATCCGCACG 57.536 42.857 0.00 0.00 0.00 5.34
2263 2391 1.910819 CACAAACAAATATCCGCACGC 59.089 47.619 0.00 0.00 0.00 5.34
2264 2392 1.537638 ACAAACAAATATCCGCACGCA 59.462 42.857 0.00 0.00 0.00 5.24
2265 2393 1.910819 CAAACAAATATCCGCACGCAC 59.089 47.619 0.00 0.00 0.00 5.34
2266 2394 1.448985 AACAAATATCCGCACGCACT 58.551 45.000 0.00 0.00 0.00 4.40
2267 2395 2.303163 ACAAATATCCGCACGCACTA 57.697 45.000 0.00 0.00 0.00 2.74
2268 2396 1.931172 ACAAATATCCGCACGCACTAC 59.069 47.619 0.00 0.00 0.00 2.73
2269 2397 1.930503 CAAATATCCGCACGCACTACA 59.069 47.619 0.00 0.00 0.00 2.74
2270 2398 2.526304 AATATCCGCACGCACTACAT 57.474 45.000 0.00 0.00 0.00 2.29
2271 2399 1.783284 ATATCCGCACGCACTACATG 58.217 50.000 0.00 0.00 0.00 3.21
2272 2400 0.741915 TATCCGCACGCACTACATGA 59.258 50.000 0.00 0.00 0.00 3.07
2273 2401 0.806102 ATCCGCACGCACTACATGAC 60.806 55.000 0.00 0.00 0.00 3.06
2274 2402 1.446099 CCGCACGCACTACATGACT 60.446 57.895 0.00 0.00 0.00 3.41
2275 2403 1.686566 CCGCACGCACTACATGACTG 61.687 60.000 0.00 0.00 0.00 3.51
2276 2404 1.421485 GCACGCACTACATGACTGC 59.579 57.895 0.00 1.67 0.00 4.40
2277 2405 1.291184 GCACGCACTACATGACTGCA 61.291 55.000 0.00 0.00 0.00 4.41
2278 2406 1.147473 CACGCACTACATGACTGCAA 58.853 50.000 0.00 0.00 0.00 4.08
2279 2407 1.530720 CACGCACTACATGACTGCAAA 59.469 47.619 0.00 0.00 0.00 3.68
2280 2408 2.160219 CACGCACTACATGACTGCAAAT 59.840 45.455 0.00 0.00 0.00 2.32
2281 2409 3.370672 CACGCACTACATGACTGCAAATA 59.629 43.478 0.00 0.00 0.00 1.40
2282 2410 4.034394 CACGCACTACATGACTGCAAATAT 59.966 41.667 0.00 0.00 0.00 1.28
2283 2411 5.234116 CACGCACTACATGACTGCAAATATA 59.766 40.000 0.00 0.00 0.00 0.86
2284 2412 5.991606 ACGCACTACATGACTGCAAATATAT 59.008 36.000 0.00 0.00 0.00 0.86
2285 2413 6.146184 ACGCACTACATGACTGCAAATATATC 59.854 38.462 0.00 0.00 0.00 1.63
2286 2414 6.367149 CGCACTACATGACTGCAAATATATCT 59.633 38.462 0.00 0.00 0.00 1.98
2307 2435 2.762535 TCTTCTAAGGACCCAAAGCG 57.237 50.000 0.00 0.00 0.00 4.68
2308 2436 1.975680 TCTTCTAAGGACCCAAAGCGT 59.024 47.619 0.00 0.00 0.00 5.07
2331 2467 3.717707 CAGACCACTGTTACCGGATATG 58.282 50.000 9.46 0.00 39.11 1.78
2332 2468 2.102588 AGACCACTGTTACCGGATATGC 59.897 50.000 9.46 0.00 0.00 3.14
2333 2469 2.102588 GACCACTGTTACCGGATATGCT 59.897 50.000 9.46 0.00 0.00 3.79
2368 2506 7.422399 GTTTGTGATTAGCCACTTTAAGAACA 58.578 34.615 0.00 0.00 37.89 3.18
2491 2657 1.203994 GACCAGCCTGACTAGCGTAAA 59.796 52.381 0.00 0.00 34.64 2.01
2493 2659 2.038033 ACCAGCCTGACTAGCGTAAAAA 59.962 45.455 0.00 0.00 34.64 1.94
2577 2746 2.205074 CGCAGACCCACTCAATATGTC 58.795 52.381 0.00 0.00 0.00 3.06
2578 2747 2.418609 CGCAGACCCACTCAATATGTCA 60.419 50.000 0.00 0.00 0.00 3.58
2651 2820 2.425668 GGTAATCCCCACCATTGTTTCG 59.574 50.000 0.00 0.00 36.01 3.46
2668 2837 5.461526 TGTTTCGATATCTATCCTCTTGCG 58.538 41.667 0.34 0.00 0.00 4.85
2694 3001 2.223923 TGGCAGTGGCAAAACATTGTAC 60.224 45.455 18.31 0.00 43.71 2.90
2738 3045 2.584418 CTCGGCCTGAGCATGTCG 60.584 66.667 10.89 0.00 42.56 4.35
2751 3058 3.614092 AGCATGTCGTCAAGGAATTCAT 58.386 40.909 7.93 0.00 0.00 2.57
2782 3089 6.539173 TCCTCTTGGTTGTTAAATCTTGCTA 58.461 36.000 0.00 0.00 34.23 3.49
2857 3165 5.738619 TGTATCTAAGAGCAACTCCAACA 57.261 39.130 0.00 0.00 0.00 3.33
2889 3198 6.586844 CGGAGTTTTTGTTTACTTTTTGTCCA 59.413 34.615 0.00 0.00 0.00 4.02
2971 3280 4.563580 CCAATATGGCCTACGCATTAGTCT 60.564 45.833 3.32 0.00 36.38 3.24
2973 3282 1.191535 TGGCCTACGCATTAGTCTGT 58.808 50.000 3.32 0.00 36.38 3.41
2974 3283 1.134818 TGGCCTACGCATTAGTCTGTG 60.135 52.381 3.32 0.00 36.38 3.66
3054 3364 1.675552 AAACCGGTCAAAGTCCACAG 58.324 50.000 8.04 0.00 0.00 3.66
3055 3365 0.818040 AACCGGTCAAAGTCCACAGC 60.818 55.000 8.04 0.00 0.00 4.40
3056 3366 1.966451 CCGGTCAAAGTCCACAGCC 60.966 63.158 0.00 0.00 0.00 4.85
3057 3367 1.071471 CGGTCAAAGTCCACAGCCT 59.929 57.895 0.00 0.00 0.00 4.58
3058 3368 1.230635 CGGTCAAAGTCCACAGCCTG 61.231 60.000 0.00 0.00 0.00 4.85
3059 3369 1.518903 GGTCAAAGTCCACAGCCTGC 61.519 60.000 0.00 0.00 0.00 4.85
3060 3370 0.819259 GTCAAAGTCCACAGCCTGCA 60.819 55.000 0.00 0.00 0.00 4.41
3061 3371 0.106769 TCAAAGTCCACAGCCTGCAA 60.107 50.000 0.00 0.00 0.00 4.08
3062 3372 0.031178 CAAAGTCCACAGCCTGCAAC 59.969 55.000 0.00 0.00 0.00 4.17
3063 3373 0.395586 AAAGTCCACAGCCTGCAACA 60.396 50.000 0.00 0.00 0.00 3.33
3064 3374 0.395586 AAGTCCACAGCCTGCAACAA 60.396 50.000 0.00 0.00 0.00 2.83
3068 3378 2.295909 GTCCACAGCCTGCAACAAAATA 59.704 45.455 0.00 0.00 0.00 1.40
3071 3381 4.040217 TCCACAGCCTGCAACAAAATAAAT 59.960 37.500 0.00 0.00 0.00 1.40
3072 3382 5.244851 TCCACAGCCTGCAACAAAATAAATA 59.755 36.000 0.00 0.00 0.00 1.40
3075 3385 7.119553 CCACAGCCTGCAACAAAATAAATAATT 59.880 33.333 0.00 0.00 0.00 1.40
3175 3487 4.007644 CTGGCGGCTCAGACCACA 62.008 66.667 11.43 0.00 36.93 4.17
3262 3582 1.380785 TCCTCCTCGTACGCCCAAT 60.381 57.895 11.24 0.00 0.00 3.16
3357 3677 1.006571 GTCTTTCCACGCCGTGAGA 60.007 57.895 20.57 11.01 35.23 3.27
3369 3689 2.737830 GTGAGATAGGCCGCCTCC 59.262 66.667 17.40 9.46 34.61 4.30
3375 3695 2.723464 GATAGGCCGCCTCCTCCTCT 62.723 65.000 17.40 0.00 37.66 3.69
3422 3742 3.075005 CACCCACTCCCGGACGAT 61.075 66.667 0.73 0.00 0.00 3.73
3514 3834 2.580601 GGTGGTGGCAGGTAGACGT 61.581 63.158 0.00 0.00 0.00 4.34
3522 3842 1.071567 GCAGGTAGACGTTGTCGCTC 61.072 60.000 0.00 0.00 41.18 5.03
3571 3893 3.721706 CAGGCCACCAGGAGTCCC 61.722 72.222 5.01 0.00 36.89 4.46
3764 4086 1.685491 CCAGTTAGGGGAGTCTAGCGT 60.685 57.143 0.00 0.00 0.00 5.07
3806 4128 2.626780 CCGACGTCAGGAGAGCACA 61.627 63.158 17.16 0.00 0.00 4.57
3811 4133 2.203640 TCAGGAGAGCACACCCGT 60.204 61.111 0.00 0.00 0.00 5.28
3833 4155 1.884926 GGATCTTCTTGGCTCGCGG 60.885 63.158 6.13 0.00 0.00 6.46
3837 4159 3.916392 CTTCTTGGCTCGCGGACGT 62.916 63.158 6.13 0.00 41.18 4.34
3840 4162 4.287781 TTGGCTCGCGGACGTTCA 62.288 61.111 6.13 0.00 41.18 3.18
3841 4163 3.793775 TTGGCTCGCGGACGTTCAA 62.794 57.895 6.13 0.18 41.18 2.69
3848 4170 2.247267 CGGACGTTCAAACCACGC 59.753 61.111 0.00 0.00 41.53 5.34
3921 4243 3.224324 ACGTCCAGCCACGACAGT 61.224 61.111 7.40 0.00 42.69 3.55
3937 4259 3.066814 GTGGGACGCGGTACTCCT 61.067 66.667 12.47 0.00 0.00 3.69
4114 4436 3.576982 TGATGACTAGGGTTTTCTGTCGT 59.423 43.478 0.00 0.00 0.00 4.34
4159 4481 2.359355 GGAGTGGGAGGAGAAGTGGATA 60.359 54.545 0.00 0.00 0.00 2.59
4200 4522 4.869297 CCATTGCAATTAAAAAGGATGCGA 59.131 37.500 9.83 0.00 39.81 5.10
4208 4530 5.713792 TTAAAAAGGATGCGATTTGGACA 57.286 34.783 0.00 0.00 0.00 4.02
4368 4700 3.882288 GTGCAAATTTGGGTTGGAAATGT 59.118 39.130 19.47 0.00 0.00 2.71
4406 4738 1.378124 CGGACGTGGTTTGGGTTTGT 61.378 55.000 0.00 0.00 0.00 2.83
4537 4869 7.060421 AGTTGTTATCTTTGAGTTTCTTCCCA 58.940 34.615 0.00 0.00 0.00 4.37
4646 4978 9.378551 GATGTTAGACAATTACATCAAGGTGTA 57.621 33.333 11.67 0.00 44.67 2.90
5134 5471 1.066787 TCGGGTGCGACATTCAATACA 60.067 47.619 0.00 0.00 0.00 2.29
5279 5616 3.426787 TTGATTGGAAGGAAGCGGTTA 57.573 42.857 0.00 0.00 0.00 2.85
5369 5706 6.721318 AGAGGAATATTTTCACCAGCTTGTA 58.279 36.000 0.00 0.00 33.23 2.41
5394 5731 3.381908 CAGAAGTCTAATACAGCCCGACT 59.618 47.826 0.00 0.00 36.58 4.18
5415 5752 2.394632 ACATAGGGTATGACGGCAAGA 58.605 47.619 0.00 0.00 39.45 3.02
5602 5939 0.388520 TCACACGCTCGGTCAATCAG 60.389 55.000 0.00 0.00 0.00 2.90
5673 6010 1.859398 CGCGTGCTAGACTTGCAAA 59.141 52.632 13.23 0.00 42.41 3.68
5674 6011 0.234625 CGCGTGCTAGACTTGCAAAA 59.765 50.000 13.23 0.00 42.41 2.44
5679 6016 1.264020 TGCTAGACTTGCAAAACTGCG 59.736 47.619 9.22 7.09 37.51 5.18
5680 6017 1.400242 GCTAGACTTGCAAAACTGCGG 60.400 52.381 13.15 0.00 37.69 5.69
5817 6154 4.056740 TCTAGAGACGCTAGTTACATCCG 58.943 47.826 12.30 0.00 45.60 4.18
5881 6218 1.066908 ACTGGCACGTTTGATTGTTGG 59.933 47.619 0.00 0.00 0.00 3.77
5883 6220 0.031994 GGCACGTTTGATTGTTGGCT 59.968 50.000 0.00 0.00 0.00 4.75
5921 6258 3.194116 CAGATGGGTTGGGAAACTTGATG 59.806 47.826 0.00 0.00 0.00 3.07
5939 6276 3.251729 TGATGAACTTGCAAGAGCTTGAC 59.748 43.478 32.50 16.04 42.93 3.18
5947 6284 0.236711 CAAGAGCTTGACTGCGTTGG 59.763 55.000 4.22 0.00 42.93 3.77
5957 6294 2.911509 TGCGTTGGTGCCTTGCAT 60.912 55.556 0.00 0.00 41.91 3.96
5968 6305 0.725117 GCCTTGCATTTGAAGCATGC 59.275 50.000 10.51 10.51 46.25 4.06
6007 6344 7.807977 AACTAACAAATCTGAGAAAGCTGAA 57.192 32.000 0.00 0.00 0.00 3.02
6014 6351 8.510505 ACAAATCTGAGAAAGCTGAAGATTAAC 58.489 33.333 8.95 0.00 35.02 2.01
6018 6355 7.220030 TCTGAGAAAGCTGAAGATTAACTTGT 58.780 34.615 0.00 0.00 39.13 3.16
6024 6361 7.659652 AAGCTGAAGATTAACTTGTACACTC 57.340 36.000 0.00 0.00 39.13 3.51
6051 6388 6.101997 GGGATTGAAGGCAACAAATTAGAAG 58.898 40.000 1.05 0.00 36.72 2.85
6170 6507 1.198759 AGCCGTTCCTCCCTGCTTTA 61.199 55.000 0.00 0.00 0.00 1.85
6180 6517 3.458189 CTCCCTGCTTTAGGTTGTATCG 58.542 50.000 0.00 0.00 45.80 2.92
6190 6527 5.750352 TTAGGTTGTATCGAGGAGGTTTT 57.250 39.130 0.00 0.00 0.00 2.43
6199 6536 8.014070 TGTATCGAGGAGGTTTTTGTATATGA 57.986 34.615 0.00 0.00 0.00 2.15
6253 6590 2.767505 GTCACTTCCCAACCTACACAG 58.232 52.381 0.00 0.00 0.00 3.66
6264 6601 2.951229 CCTACACAGGTTGGTTTCCT 57.049 50.000 0.00 0.00 37.15 3.36
6330 6667 6.173427 TGATACCCAATCTGATCGATTTGA 57.827 37.500 8.75 6.46 40.33 2.69
6343 6680 5.637810 TGATCGATTTGACACTGTCTTTACC 59.362 40.000 10.54 0.00 33.15 2.85
6344 6681 3.985279 TCGATTTGACACTGTCTTTACCG 59.015 43.478 10.54 7.67 33.15 4.02
6345 6682 3.122948 CGATTTGACACTGTCTTTACCGG 59.877 47.826 10.54 0.00 33.15 5.28
6346 6683 2.536761 TTGACACTGTCTTTACCGGG 57.463 50.000 6.32 0.00 33.15 5.73
6376 6713 1.718757 GCTGGGCGGTTCATCATCAC 61.719 60.000 0.00 0.00 0.00 3.06
6408 6745 5.232838 GGATTTCAACAGTTGCAGAGTTTTG 59.767 40.000 8.58 0.00 0.00 2.44
6409 6746 5.384063 TTTCAACAGTTGCAGAGTTTTGA 57.616 34.783 8.58 0.00 0.00 2.69
6411 6748 3.111098 CAACAGTTGCAGAGTTTTGAGC 58.889 45.455 0.00 0.00 0.00 4.26
6415 6752 4.040376 CAGTTGCAGAGTTTTGAGCTTTC 58.960 43.478 0.00 0.00 0.00 2.62
6418 6755 1.068954 GCAGAGTTTTGAGCTTTCCGG 60.069 52.381 0.00 0.00 0.00 5.14
6421 6758 3.433615 CAGAGTTTTGAGCTTTCCGGTAG 59.566 47.826 0.00 1.12 0.00 3.18
6483 6823 3.879427 CTCAAGGAGCTTATACTCGACG 58.121 50.000 0.00 0.00 37.57 5.12
6492 6832 4.575236 AGCTTATACTCGACGACTTCATCA 59.425 41.667 0.00 0.00 0.00 3.07
6493 6833 4.907010 GCTTATACTCGACGACTTCATCAG 59.093 45.833 0.00 0.00 0.00 2.90
6573 6913 0.528017 TCGCCTCACTGTCAGCTTAG 59.472 55.000 0.00 0.00 0.00 2.18
6574 6914 1.080995 CGCCTCACTGTCAGCTTAGC 61.081 60.000 0.00 0.00 0.00 3.09
6579 6919 0.036577 CACTGTCAGCTTAGCCTGCT 60.037 55.000 0.00 0.00 42.06 4.24
6580 6920 1.205655 CACTGTCAGCTTAGCCTGCTA 59.794 52.381 0.00 0.00 38.92 3.49
6582 6922 2.102252 ACTGTCAGCTTAGCCTGCTATC 59.898 50.000 0.00 0.00 38.92 2.08
6693 7033 3.668447 AGACTTTATCCGCAGCATATGG 58.332 45.455 4.56 0.00 0.00 2.74
6792 7132 7.812690 AGATCAAAAGATGTGCATATGCTTA 57.187 32.000 27.13 16.57 42.66 3.09
6916 7256 3.591023 TGATTGGATGCTGCAACAAATG 58.409 40.909 16.12 0.00 28.29 2.32
6952 7295 0.245539 TTCGGGCTACCTCTTTGTCG 59.754 55.000 0.00 0.00 33.28 4.35
6994 7337 2.575694 TTTGTGTTGCGCAACTGATT 57.424 40.000 42.62 0.00 41.67 2.57
7003 7346 2.736721 TGCGCAACTGATTCTTCTGTAC 59.263 45.455 8.16 0.00 34.05 2.90
7033 7376 6.884832 TGGAAGTATCACGAATTAGTGGAAT 58.115 36.000 17.23 8.15 42.10 3.01
7036 7379 7.657761 GGAAGTATCACGAATTAGTGGAATGAT 59.342 37.037 17.23 6.90 42.10 2.45
7073 7416 6.326375 AGACAAGTATCACGAATTCAGAGTC 58.674 40.000 6.22 6.27 0.00 3.36
7074 7417 6.025749 ACAAGTATCACGAATTCAGAGTCA 57.974 37.500 6.22 0.00 0.00 3.41
7288 7686 7.280876 GCAGTAATCAGATCCACATTTGTTCTA 59.719 37.037 0.00 0.00 0.00 2.10
7317 7715 2.092968 TGTGCCCTTGGATCATACTCAC 60.093 50.000 0.00 0.00 0.00 3.51
7628 8033 6.183360 CGGTCAAAGATGCGTATTAAAAGACT 60.183 38.462 0.00 0.00 0.00 3.24
7629 8034 7.009815 CGGTCAAAGATGCGTATTAAAAGACTA 59.990 37.037 0.00 0.00 0.00 2.59
7742 8147 7.811653 TGTAATTTGAATTAACATGCAGACGA 58.188 30.769 0.00 0.00 33.05 4.20
7783 8188 3.805422 TGTACATCAAAGACCACGTCAAC 59.195 43.478 0.00 0.00 34.60 3.18
7845 8250 5.904362 GGAAAGGATCCCATATATGTTGC 57.096 43.478 8.55 2.16 43.00 4.17
7888 8293 2.763651 GGAACGGATCCCAAGTTCG 58.236 57.895 18.91 4.74 43.57 3.95
7889 8294 1.366854 GGAACGGATCCCAAGTTCGC 61.367 60.000 18.91 11.62 43.57 4.70
7890 8295 1.366854 GAACGGATCCCAAGTTCGCC 61.367 60.000 13.22 0.00 35.56 5.54
7891 8296 2.513897 CGGATCCCAAGTTCGCCC 60.514 66.667 6.06 0.00 0.00 6.13
7892 8297 2.124278 GGATCCCAAGTTCGCCCC 60.124 66.667 0.00 0.00 0.00 5.80
7893 8298 2.674754 GATCCCAAGTTCGCCCCA 59.325 61.111 0.00 0.00 0.00 4.96
7894 8299 1.452108 GATCCCAAGTTCGCCCCAG 60.452 63.158 0.00 0.00 0.00 4.45
7895 8300 1.910580 GATCCCAAGTTCGCCCCAGA 61.911 60.000 0.00 0.00 0.00 3.86
7896 8301 1.497309 ATCCCAAGTTCGCCCCAGAA 61.497 55.000 0.00 0.00 0.00 3.02
7897 8302 1.675641 CCCAAGTTCGCCCCAGAAG 60.676 63.158 0.00 0.00 0.00 2.85
7898 8303 2.335712 CCAAGTTCGCCCCAGAAGC 61.336 63.158 0.00 0.00 0.00 3.86
7899 8304 2.034221 AAGTTCGCCCCAGAAGCC 59.966 61.111 0.00 0.00 0.00 4.35
7900 8305 3.901797 AAGTTCGCCCCAGAAGCCG 62.902 63.158 0.00 0.00 0.00 5.52
7901 8306 4.699522 GTTCGCCCCAGAAGCCGT 62.700 66.667 0.00 0.00 0.00 5.68
7902 8307 3.948719 TTCGCCCCAGAAGCCGTT 61.949 61.111 0.00 0.00 0.00 4.44
7903 8308 2.585341 TTCGCCCCAGAAGCCGTTA 61.585 57.895 0.00 0.00 0.00 3.18
7904 8309 1.906105 TTCGCCCCAGAAGCCGTTAT 61.906 55.000 0.00 0.00 0.00 1.89
7905 8310 1.451387 CGCCCCAGAAGCCGTTATT 60.451 57.895 0.00 0.00 0.00 1.40
7906 8311 1.029947 CGCCCCAGAAGCCGTTATTT 61.030 55.000 0.00 0.00 0.00 1.40
7907 8312 0.455815 GCCCCAGAAGCCGTTATTTG 59.544 55.000 0.00 0.00 0.00 2.32
7908 8313 1.953311 GCCCCAGAAGCCGTTATTTGA 60.953 52.381 0.00 0.00 0.00 2.69
7909 8314 2.442413 CCCCAGAAGCCGTTATTTGAA 58.558 47.619 0.00 0.00 0.00 2.69
7910 8315 2.823154 CCCCAGAAGCCGTTATTTGAAA 59.177 45.455 0.00 0.00 0.00 2.69
7911 8316 3.447229 CCCCAGAAGCCGTTATTTGAAAT 59.553 43.478 0.00 0.00 0.00 2.17
7912 8317 4.081697 CCCCAGAAGCCGTTATTTGAAATT 60.082 41.667 0.00 0.00 0.00 1.82
7913 8318 5.126384 CCCCAGAAGCCGTTATTTGAAATTA 59.874 40.000 0.00 0.00 0.00 1.40
7914 8319 6.350612 CCCCAGAAGCCGTTATTTGAAATTAA 60.351 38.462 0.00 0.00 0.00 1.40
7915 8320 7.093992 CCCAGAAGCCGTTATTTGAAATTAAA 58.906 34.615 0.00 0.00 0.00 1.52
7916 8321 7.600752 CCCAGAAGCCGTTATTTGAAATTAAAA 59.399 33.333 0.00 0.00 0.00 1.52
7917 8322 9.150348 CCAGAAGCCGTTATTTGAAATTAAAAT 57.850 29.630 0.00 0.00 0.00 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
72 73 2.034879 CACCAAAGGCACGCTCGAT 61.035 57.895 0.00 0.00 0.00 3.59
132 134 1.220529 CAGTTTCTGCGTGCTTCAGA 58.779 50.000 0.00 0.20 38.67 3.27
276 278 3.840890 TGAACTGTTCAAACGTTGCTT 57.159 38.095 20.14 0.00 36.59 3.91
277 279 3.243068 GGATGAACTGTTCAAACGTTGCT 60.243 43.478 25.26 7.92 43.95 3.91
297 299 3.758023 ACGCATGTCTTGATGAAATTGGA 59.242 39.130 0.00 0.00 0.00 3.53
356 360 5.912149 ACATGACCCCACATATACTCAAT 57.088 39.130 0.00 0.00 0.00 2.57
372 376 2.627945 TCTATCGGTTGCCAACATGAC 58.372 47.619 10.18 0.00 0.00 3.06
435 440 9.930693 ACAAGCCGGATACAAATAAAAATAAAA 57.069 25.926 5.05 0.00 0.00 1.52
520 550 5.594317 GGCTGGCTACCCAATATTATATTGG 59.406 44.000 28.19 28.19 46.11 3.16
536 577 4.175337 GGCATGGTCGGCTGGCTA 62.175 66.667 0.00 0.00 35.25 3.93
546 597 2.513666 CATACGTGCCGGCATGGT 60.514 61.111 42.89 36.40 41.21 3.55
559 610 2.398036 CAACGCGCCGAACCATAC 59.602 61.111 5.73 0.00 0.00 2.39
665 717 2.031508 CCGCATTTGTTTAGGTCGTTGT 60.032 45.455 0.00 0.00 0.00 3.32
666 718 2.580589 CCGCATTTGTTTAGGTCGTTG 58.419 47.619 0.00 0.00 0.00 4.10
667 719 1.538075 CCCGCATTTGTTTAGGTCGTT 59.462 47.619 0.00 0.00 0.00 3.85
668 720 1.161843 CCCGCATTTGTTTAGGTCGT 58.838 50.000 0.00 0.00 0.00 4.34
669 721 0.179174 GCCCGCATTTGTTTAGGTCG 60.179 55.000 0.00 0.00 0.00 4.79
670 722 0.885196 TGCCCGCATTTGTTTAGGTC 59.115 50.000 0.00 0.00 0.00 3.85
671 723 0.887933 CTGCCCGCATTTGTTTAGGT 59.112 50.000 0.00 0.00 0.00 3.08
672 724 1.173043 TCTGCCCGCATTTGTTTAGG 58.827 50.000 0.00 0.00 0.00 2.69
673 725 2.423185 TCATCTGCCCGCATTTGTTTAG 59.577 45.455 0.00 0.00 0.00 1.85
674 726 2.441410 TCATCTGCCCGCATTTGTTTA 58.559 42.857 0.00 0.00 0.00 2.01
675 727 1.255882 TCATCTGCCCGCATTTGTTT 58.744 45.000 0.00 0.00 0.00 2.83
676 728 1.255882 TTCATCTGCCCGCATTTGTT 58.744 45.000 0.00 0.00 0.00 2.83
677 729 1.255882 TTTCATCTGCCCGCATTTGT 58.744 45.000 0.00 0.00 0.00 2.83
678 730 2.198406 CATTTCATCTGCCCGCATTTG 58.802 47.619 0.00 0.00 0.00 2.32
679 731 1.826720 ACATTTCATCTGCCCGCATTT 59.173 42.857 0.00 0.00 0.00 2.32
680 732 1.477553 ACATTTCATCTGCCCGCATT 58.522 45.000 0.00 0.00 0.00 3.56
681 733 2.346766 TACATTTCATCTGCCCGCAT 57.653 45.000 0.00 0.00 0.00 4.73
682 734 2.221169 GATACATTTCATCTGCCCGCA 58.779 47.619 0.00 0.00 0.00 5.69
683 735 1.195448 CGATACATTTCATCTGCCCGC 59.805 52.381 0.00 0.00 0.00 6.13
684 736 1.195448 GCGATACATTTCATCTGCCCG 59.805 52.381 0.00 0.00 0.00 6.13
685 737 2.225019 CAGCGATACATTTCATCTGCCC 59.775 50.000 0.00 0.00 0.00 5.36
686 738 2.350197 GCAGCGATACATTTCATCTGCC 60.350 50.000 0.00 0.00 36.59 4.85
687 739 2.661169 CGCAGCGATACATTTCATCTGC 60.661 50.000 9.98 0.00 37.96 4.26
688 740 2.541346 ACGCAGCGATACATTTCATCTG 59.459 45.455 24.65 0.00 0.00 2.90
689 741 2.826428 ACGCAGCGATACATTTCATCT 58.174 42.857 24.65 0.00 0.00 2.90
690 742 3.283256 CAACGCAGCGATACATTTCATC 58.717 45.455 24.65 0.00 0.00 2.92
691 743 2.032054 CCAACGCAGCGATACATTTCAT 59.968 45.455 24.65 0.00 0.00 2.57
692 744 1.396648 CCAACGCAGCGATACATTTCA 59.603 47.619 24.65 0.00 0.00 2.69
693 745 1.663643 TCCAACGCAGCGATACATTTC 59.336 47.619 24.65 0.00 0.00 2.17
694 746 1.665679 CTCCAACGCAGCGATACATTT 59.334 47.619 24.65 0.00 0.00 2.32
695 747 1.134818 TCTCCAACGCAGCGATACATT 60.135 47.619 24.65 0.87 0.00 2.71
696 748 0.459899 TCTCCAACGCAGCGATACAT 59.540 50.000 24.65 0.00 0.00 2.29
697 749 0.457853 GTCTCCAACGCAGCGATACA 60.458 55.000 24.65 1.17 0.00 2.29
698 750 1.472276 CGTCTCCAACGCAGCGATAC 61.472 60.000 24.65 3.49 45.76 2.24
699 751 1.226575 CGTCTCCAACGCAGCGATA 60.227 57.895 24.65 2.27 45.76 2.92
700 752 2.507102 CGTCTCCAACGCAGCGAT 60.507 61.111 24.65 6.83 45.76 4.58
708 760 0.788391 CCGTTAACAGCGTCTCCAAC 59.212 55.000 6.39 0.00 0.00 3.77
709 761 0.675083 TCCGTTAACAGCGTCTCCAA 59.325 50.000 6.39 0.00 0.00 3.53
710 762 0.242825 CTCCGTTAACAGCGTCTCCA 59.757 55.000 6.39 0.00 0.00 3.86
711 763 1.077089 GCTCCGTTAACAGCGTCTCC 61.077 60.000 6.39 0.00 0.00 3.71
712 764 0.388134 TGCTCCGTTAACAGCGTCTC 60.388 55.000 11.92 0.00 38.59 3.36
713 765 0.032952 TTGCTCCGTTAACAGCGTCT 59.967 50.000 11.92 0.00 38.59 4.18
714 766 0.863144 TTTGCTCCGTTAACAGCGTC 59.137 50.000 11.92 0.00 38.59 5.19
715 767 0.865769 CTTTGCTCCGTTAACAGCGT 59.134 50.000 11.92 0.00 38.59 5.07
716 768 0.865769 ACTTTGCTCCGTTAACAGCG 59.134 50.000 11.92 2.77 38.59 5.18
717 769 1.136336 CGACTTTGCTCCGTTAACAGC 60.136 52.381 10.26 10.26 36.08 4.40
718 770 2.132762 ACGACTTTGCTCCGTTAACAG 58.867 47.619 6.39 0.00 32.03 3.16
719 771 2.228138 ACGACTTTGCTCCGTTAACA 57.772 45.000 6.39 0.00 32.03 2.41
720 772 2.349155 CCAACGACTTTGCTCCGTTAAC 60.349 50.000 0.00 0.00 43.51 2.01
721 773 1.868498 CCAACGACTTTGCTCCGTTAA 59.132 47.619 0.00 0.00 43.51 2.01
722 774 1.202557 ACCAACGACTTTGCTCCGTTA 60.203 47.619 0.00 0.00 43.51 3.18
723 775 0.463116 ACCAACGACTTTGCTCCGTT 60.463 50.000 0.00 0.00 45.82 4.44
724 776 0.390124 TACCAACGACTTTGCTCCGT 59.610 50.000 0.00 0.00 38.24 4.69
725 777 1.068474 CTACCAACGACTTTGCTCCG 58.932 55.000 0.00 0.00 33.34 4.63
726 778 2.067013 GACTACCAACGACTTTGCTCC 58.933 52.381 0.00 0.00 33.34 4.70
727 779 1.719780 CGACTACCAACGACTTTGCTC 59.280 52.381 0.00 0.00 33.34 4.26
728 780 1.604693 CCGACTACCAACGACTTTGCT 60.605 52.381 0.00 0.00 33.34 3.91
729 781 0.788391 CCGACTACCAACGACTTTGC 59.212 55.000 0.00 0.00 33.34 3.68
730 782 2.056577 GTCCGACTACCAACGACTTTG 58.943 52.381 0.00 0.00 34.63 2.77
731 783 1.000171 GGTCCGACTACCAACGACTTT 60.000 52.381 0.00 0.00 39.50 2.66
732 784 0.600057 GGTCCGACTACCAACGACTT 59.400 55.000 0.00 0.00 39.50 3.01
733 785 1.580845 CGGTCCGACTACCAACGACT 61.581 60.000 4.91 0.00 39.71 4.18
734 786 1.154150 CGGTCCGACTACCAACGAC 60.154 63.158 4.91 0.00 39.71 4.34
735 787 1.300971 CTCGGTCCGACTACCAACGA 61.301 60.000 10.71 0.00 39.71 3.85
736 788 1.136147 CTCGGTCCGACTACCAACG 59.864 63.158 10.71 0.00 39.71 4.10
737 789 1.153881 GCTCGGTCCGACTACCAAC 60.154 63.158 10.71 0.00 39.71 3.77
738 790 1.180456 TTGCTCGGTCCGACTACCAA 61.180 55.000 10.71 8.63 39.71 3.67
739 791 1.180456 TTTGCTCGGTCCGACTACCA 61.180 55.000 10.71 2.53 39.71 3.25
740 792 0.458025 CTTTGCTCGGTCCGACTACC 60.458 60.000 10.71 0.00 36.08 3.18
741 793 0.243095 ACTTTGCTCGGTCCGACTAC 59.757 55.000 10.71 3.49 0.00 2.73
742 794 1.825090 TACTTTGCTCGGTCCGACTA 58.175 50.000 10.71 0.00 0.00 2.59
743 795 0.963962 TTACTTTGCTCGGTCCGACT 59.036 50.000 10.71 0.00 0.00 4.18
744 796 2.005971 ATTACTTTGCTCGGTCCGAC 57.994 50.000 10.71 8.33 0.00 4.79
745 797 2.343101 CAATTACTTTGCTCGGTCCGA 58.657 47.619 14.54 14.54 0.00 4.55
746 798 2.806288 CAATTACTTTGCTCGGTCCG 57.194 50.000 4.39 4.39 0.00 4.79
774 826 3.977134 TCTACAGTCTCGTCCACTACT 57.023 47.619 0.00 0.00 0.00 2.57
780 832 4.158025 TGGATTCTTTCTACAGTCTCGTCC 59.842 45.833 0.00 0.00 0.00 4.79
781 833 5.096849 GTGGATTCTTTCTACAGTCTCGTC 58.903 45.833 0.00 0.00 35.96 4.20
782 834 4.379603 CGTGGATTCTTTCTACAGTCTCGT 60.380 45.833 0.00 0.00 35.66 4.18
783 835 4.099120 CGTGGATTCTTTCTACAGTCTCG 58.901 47.826 0.00 0.00 35.66 4.04
799 853 4.960938 TGCTCAAGATATAAAGCGTGGAT 58.039 39.130 0.00 0.00 37.57 3.41
855 909 3.878160 TTCACATGGTATACAGCACGA 57.122 42.857 5.01 0.00 34.37 4.35
875 929 0.320771 AGCCGACAAGACAAAGCGAT 60.321 50.000 0.00 0.00 0.00 4.58
878 932 0.884704 TGGAGCCGACAAGACAAAGC 60.885 55.000 0.00 0.00 0.00 3.51
920 1011 1.153208 GATGGCAGTGGAGAGCAGG 60.153 63.158 0.00 0.00 0.00 4.85
921 1012 1.521010 CGATGGCAGTGGAGAGCAG 60.521 63.158 0.00 0.00 0.00 4.24
922 1013 2.580815 CGATGGCAGTGGAGAGCA 59.419 61.111 0.00 0.00 0.00 4.26
923 1014 2.894387 GCGATGGCAGTGGAGAGC 60.894 66.667 0.00 0.00 39.62 4.09
924 1015 2.202987 GGCGATGGCAGTGGAGAG 60.203 66.667 1.01 0.00 42.47 3.20
925 1016 2.315781 GATGGCGATGGCAGTGGAGA 62.316 60.000 1.01 0.00 42.43 3.71
926 1017 1.890979 GATGGCGATGGCAGTGGAG 60.891 63.158 1.01 0.00 42.43 3.86
927 1018 2.190313 GATGGCGATGGCAGTGGA 59.810 61.111 1.01 0.00 42.43 4.02
928 1019 2.184830 CAGATGGCGATGGCAGTGG 61.185 63.158 1.01 0.00 42.43 4.00
929 1020 2.831366 GCAGATGGCGATGGCAGTG 61.831 63.158 1.01 0.70 42.43 3.66
930 1021 2.515523 GCAGATGGCGATGGCAGT 60.516 61.111 1.01 0.00 42.43 4.40
968 1070 3.192422 GCTCTCTATCTCTGTGTGTGTGT 59.808 47.826 0.00 0.00 0.00 3.72
969 1071 3.192212 TGCTCTCTATCTCTGTGTGTGTG 59.808 47.826 0.00 0.00 0.00 3.82
970 1072 3.425659 TGCTCTCTATCTCTGTGTGTGT 58.574 45.455 0.00 0.00 0.00 3.72
971 1073 3.693578 TCTGCTCTCTATCTCTGTGTGTG 59.306 47.826 0.00 0.00 0.00 3.82
972 1074 3.947196 CTCTGCTCTCTATCTCTGTGTGT 59.053 47.826 0.00 0.00 0.00 3.72
973 1075 3.243168 GCTCTGCTCTCTATCTCTGTGTG 60.243 52.174 0.00 0.00 0.00 3.82
974 1076 2.951642 GCTCTGCTCTCTATCTCTGTGT 59.048 50.000 0.00 0.00 0.00 3.72
975 1077 2.950975 TGCTCTGCTCTCTATCTCTGTG 59.049 50.000 0.00 0.00 0.00 3.66
976 1078 3.295585 TGCTCTGCTCTCTATCTCTGT 57.704 47.619 0.00 0.00 0.00 3.41
977 1079 3.380954 TGTTGCTCTGCTCTCTATCTCTG 59.619 47.826 0.00 0.00 0.00 3.35
978 1080 3.630168 TGTTGCTCTGCTCTCTATCTCT 58.370 45.455 0.00 0.00 0.00 3.10
979 1081 4.383850 TTGTTGCTCTGCTCTCTATCTC 57.616 45.455 0.00 0.00 0.00 2.75
980 1082 4.443175 CCATTGTTGCTCTGCTCTCTATCT 60.443 45.833 0.00 0.00 0.00 1.98
981 1083 3.808726 CCATTGTTGCTCTGCTCTCTATC 59.191 47.826 0.00 0.00 0.00 2.08
982 1084 3.806380 CCATTGTTGCTCTGCTCTCTAT 58.194 45.455 0.00 0.00 0.00 1.98
983 1085 2.679059 GCCATTGTTGCTCTGCTCTCTA 60.679 50.000 0.00 0.00 0.00 2.43
984 1086 1.949547 GCCATTGTTGCTCTGCTCTCT 60.950 52.381 0.00 0.00 0.00 3.10
985 1087 0.450983 GCCATTGTTGCTCTGCTCTC 59.549 55.000 0.00 0.00 0.00 3.20
986 1088 1.303799 CGCCATTGTTGCTCTGCTCT 61.304 55.000 0.00 0.00 0.00 4.09
987 1089 1.136147 CGCCATTGTTGCTCTGCTC 59.864 57.895 0.00 0.00 0.00 4.26
988 1090 2.338015 CCGCCATTGTTGCTCTGCT 61.338 57.895 0.00 0.00 0.00 4.24
989 1091 2.180017 CCGCCATTGTTGCTCTGC 59.820 61.111 0.00 0.00 0.00 4.26
990 1092 1.651240 CTCCCGCCATTGTTGCTCTG 61.651 60.000 0.00 0.00 0.00 3.35
1007 1109 1.086634 GGATGCGCTCACCAGAACTC 61.087 60.000 9.73 0.00 0.00 3.01
1050 1152 0.541863 ACATAGCTCCCAACTTCCGG 59.458 55.000 0.00 0.00 0.00 5.14
1074 1176 5.095145 TCTTGAGCAGCTTGTATTCATCT 57.905 39.130 0.00 0.00 0.00 2.90
1171 1273 1.216710 GTTCGTCAGGCTCCTCCAG 59.783 63.158 0.00 0.00 37.29 3.86
1230 1332 4.998788 TGTCGATGTTGTCCTCTATCTTG 58.001 43.478 0.00 0.00 0.00 3.02
1363 1471 0.035439 TTGACCTTCTTGGCGATCCC 60.035 55.000 0.00 0.00 40.22 3.85
1375 1483 7.645058 TTTCTTTCTTGATGTCTTTGACCTT 57.355 32.000 0.00 0.00 0.00 3.50
1396 1504 4.870426 TCTGTCGCTGACATCCTTAATTTC 59.130 41.667 10.93 0.00 41.94 2.17
1544 1652 0.897863 CCGGCATAGAGGAGGAGGAG 60.898 65.000 0.00 0.00 0.00 3.69
1679 1787 8.660373 CCAACAATAGAGACAGATTTAAGTGAC 58.340 37.037 0.00 0.00 0.00 3.67
1932 2040 8.478066 TGTTACTTTGTAGCAGATCTCACATAT 58.522 33.333 0.00 0.00 0.00 1.78
1994 2122 6.261158 TGAGGACGAATGTAAATCACACAAAA 59.739 34.615 0.00 0.00 40.86 2.44
2056 2184 4.627467 ACAGATCGACATAAGTTGCAAGAC 59.373 41.667 0.00 0.00 0.00 3.01
2058 2186 5.120674 TGAACAGATCGACATAAGTTGCAAG 59.879 40.000 0.00 0.00 0.00 4.01
2086 2214 8.812329 CCGCATACAGATTTTAGCTATATCTTC 58.188 37.037 13.46 0.62 0.00 2.87
2111 2239 1.315257 ATGTGTGGCGCCAGAAATCC 61.315 55.000 33.73 18.15 0.00 3.01
2129 2257 6.610075 ACCTGTGGCAATCAATTAGAAAAT 57.390 33.333 0.00 0.00 0.00 1.82
2130 2258 6.418057 AACCTGTGGCAATCAATTAGAAAA 57.582 33.333 0.00 0.00 0.00 2.29
2131 2259 6.183360 ACAAACCTGTGGCAATCAATTAGAAA 60.183 34.615 0.00 0.00 33.30 2.52
2132 2260 5.304101 ACAAACCTGTGGCAATCAATTAGAA 59.696 36.000 0.00 0.00 33.30 2.10
2133 2261 4.832266 ACAAACCTGTGGCAATCAATTAGA 59.168 37.500 0.00 0.00 33.30 2.10
2134 2262 5.138125 ACAAACCTGTGGCAATCAATTAG 57.862 39.130 0.00 0.00 33.30 1.73
2135 2263 4.586421 TGACAAACCTGTGGCAATCAATTA 59.414 37.500 0.00 0.00 32.03 1.40
2136 2264 3.387374 TGACAAACCTGTGGCAATCAATT 59.613 39.130 0.00 0.00 32.03 2.32
2137 2265 2.964464 TGACAAACCTGTGGCAATCAAT 59.036 40.909 0.00 0.00 32.03 2.57
2138 2266 2.382882 TGACAAACCTGTGGCAATCAA 58.617 42.857 0.00 0.00 32.03 2.57
2139 2267 2.064434 TGACAAACCTGTGGCAATCA 57.936 45.000 0.00 0.00 32.03 2.57
2140 2268 3.123050 GTTTGACAAACCTGTGGCAATC 58.877 45.455 18.52 0.00 45.85 2.67
2141 2269 2.765699 AGTTTGACAAACCTGTGGCAAT 59.234 40.909 24.09 3.06 45.85 3.56
2142 2270 2.175202 AGTTTGACAAACCTGTGGCAA 58.825 42.857 24.09 0.00 44.91 4.52
2143 2271 1.846007 AGTTTGACAAACCTGTGGCA 58.154 45.000 24.09 0.00 42.34 4.92
2144 2272 2.539476 CAAGTTTGACAAACCTGTGGC 58.461 47.619 24.09 1.34 42.34 5.01
2145 2273 2.539476 GCAAGTTTGACAAACCTGTGG 58.461 47.619 24.09 12.24 42.34 4.17
2146 2274 2.184448 CGCAAGTTTGACAAACCTGTG 58.816 47.619 24.09 23.07 42.34 3.66
2147 2275 1.134175 CCGCAAGTTTGACAAACCTGT 59.866 47.619 24.09 9.92 42.34 4.00
2148 2276 1.838913 CCGCAAGTTTGACAAACCTG 58.161 50.000 24.09 22.27 42.34 4.00
2149 2277 0.102300 GCCGCAAGTTTGACAAACCT 59.898 50.000 24.09 11.53 42.34 3.50
2150 2278 0.102300 AGCCGCAAGTTTGACAAACC 59.898 50.000 24.09 10.71 42.34 3.27
2151 2279 2.766970 TAGCCGCAAGTTTGACAAAC 57.233 45.000 21.09 21.09 41.69 2.93
2152 2280 2.621055 ACATAGCCGCAAGTTTGACAAA 59.379 40.909 0.00 0.00 0.00 2.83
2153 2281 2.226330 ACATAGCCGCAAGTTTGACAA 58.774 42.857 0.00 0.00 0.00 3.18
2154 2282 1.890876 ACATAGCCGCAAGTTTGACA 58.109 45.000 0.00 0.00 0.00 3.58
2155 2283 2.484264 AGAACATAGCCGCAAGTTTGAC 59.516 45.455 0.00 0.00 0.00 3.18
2156 2284 2.483877 CAGAACATAGCCGCAAGTTTGA 59.516 45.455 0.00 0.00 0.00 2.69
2157 2285 2.226437 ACAGAACATAGCCGCAAGTTTG 59.774 45.455 0.00 0.00 0.00 2.93
2158 2286 2.504367 ACAGAACATAGCCGCAAGTTT 58.496 42.857 0.00 0.00 0.00 2.66
2159 2287 2.185004 ACAGAACATAGCCGCAAGTT 57.815 45.000 0.00 0.00 0.00 2.66
2160 2288 2.185004 AACAGAACATAGCCGCAAGT 57.815 45.000 0.00 0.00 0.00 3.16
2161 2289 4.882671 ATAAACAGAACATAGCCGCAAG 57.117 40.909 0.00 0.00 0.00 4.01
2162 2290 6.745159 TTAATAAACAGAACATAGCCGCAA 57.255 33.333 0.00 0.00 0.00 4.85
2163 2291 6.745159 TTTAATAAACAGAACATAGCCGCA 57.255 33.333 0.00 0.00 0.00 5.69
2164 2292 9.893305 ATTATTTAATAAACAGAACATAGCCGC 57.107 29.630 1.28 0.00 0.00 6.53
2176 2304 9.295214 CGCCATGTCACAATTATTTAATAAACA 57.705 29.630 1.28 2.18 0.00 2.83
2177 2305 8.265998 GCGCCATGTCACAATTATTTAATAAAC 58.734 33.333 0.00 0.00 0.00 2.01
2178 2306 7.436673 GGCGCCATGTCACAATTATTTAATAAA 59.563 33.333 24.80 0.00 0.00 1.40
2179 2307 6.920758 GGCGCCATGTCACAATTATTTAATAA 59.079 34.615 24.80 0.00 0.00 1.40
2180 2308 6.039829 TGGCGCCATGTCACAATTATTTAATA 59.960 34.615 29.03 0.00 0.00 0.98
2181 2309 5.163468 TGGCGCCATGTCACAATTATTTAAT 60.163 36.000 29.03 0.00 0.00 1.40
2182 2310 4.158579 TGGCGCCATGTCACAATTATTTAA 59.841 37.500 29.03 0.00 0.00 1.52
2183 2311 3.696548 TGGCGCCATGTCACAATTATTTA 59.303 39.130 29.03 0.00 0.00 1.40
2184 2312 2.495270 TGGCGCCATGTCACAATTATTT 59.505 40.909 29.03 0.00 0.00 1.40
2185 2313 2.098614 TGGCGCCATGTCACAATTATT 58.901 42.857 29.03 0.00 0.00 1.40
2186 2314 1.677576 CTGGCGCCATGTCACAATTAT 59.322 47.619 32.87 0.00 0.00 1.28
2187 2315 1.093972 CTGGCGCCATGTCACAATTA 58.906 50.000 32.87 1.17 0.00 1.40
2188 2316 0.895100 ACTGGCGCCATGTCACAATT 60.895 50.000 32.87 3.40 0.00 2.32
2189 2317 1.303561 ACTGGCGCCATGTCACAAT 60.304 52.632 32.87 5.16 0.00 2.71
2190 2318 2.112928 ACTGGCGCCATGTCACAA 59.887 55.556 32.87 3.62 0.00 3.33
2191 2319 2.669229 CACTGGCGCCATGTCACA 60.669 61.111 32.87 4.54 0.00 3.58
2192 2320 1.514678 TTTCACTGGCGCCATGTCAC 61.515 55.000 32.87 0.00 0.00 3.67
2193 2321 0.821301 TTTTCACTGGCGCCATGTCA 60.821 50.000 32.87 14.39 0.00 3.58
2194 2322 0.387239 GTTTTCACTGGCGCCATGTC 60.387 55.000 32.87 13.31 0.00 3.06
2195 2323 1.106351 TGTTTTCACTGGCGCCATGT 61.106 50.000 32.87 25.87 0.00 3.21
2196 2324 0.031857 TTGTTTTCACTGGCGCCATG 59.968 50.000 32.87 27.57 0.00 3.66
2197 2325 0.968405 ATTGTTTTCACTGGCGCCAT 59.032 45.000 32.87 17.66 0.00 4.40
2198 2326 1.539388 CTATTGTTTTCACTGGCGCCA 59.461 47.619 30.59 30.59 0.00 5.69
2199 2327 1.810151 TCTATTGTTTTCACTGGCGCC 59.190 47.619 22.73 22.73 0.00 6.53
2200 2328 2.484264 AGTCTATTGTTTTCACTGGCGC 59.516 45.455 0.00 0.00 0.00 6.53
2201 2329 4.688879 TGTAGTCTATTGTTTTCACTGGCG 59.311 41.667 0.00 0.00 0.00 5.69
2202 2330 6.546395 CATGTAGTCTATTGTTTTCACTGGC 58.454 40.000 0.00 0.00 0.00 4.85
2203 2331 6.149308 TGCATGTAGTCTATTGTTTTCACTGG 59.851 38.462 0.00 0.00 0.00 4.00
2204 2332 7.132694 TGCATGTAGTCTATTGTTTTCACTG 57.867 36.000 0.00 0.00 0.00 3.66
2205 2333 7.744087 TTGCATGTAGTCTATTGTTTTCACT 57.256 32.000 0.00 0.00 0.00 3.41
2206 2334 8.970691 AATTGCATGTAGTCTATTGTTTTCAC 57.029 30.769 0.00 0.00 0.00 3.18
2207 2335 8.243426 GGAATTGCATGTAGTCTATTGTTTTCA 58.757 33.333 0.00 0.00 0.00 2.69
2208 2336 7.702348 GGGAATTGCATGTAGTCTATTGTTTTC 59.298 37.037 0.00 0.00 0.00 2.29
2209 2337 7.397192 AGGGAATTGCATGTAGTCTATTGTTTT 59.603 33.333 0.00 0.00 0.00 2.43
2210 2338 6.891908 AGGGAATTGCATGTAGTCTATTGTTT 59.108 34.615 0.00 0.00 0.00 2.83
2211 2339 6.426587 AGGGAATTGCATGTAGTCTATTGTT 58.573 36.000 0.00 0.00 0.00 2.83
2212 2340 6.006275 AGGGAATTGCATGTAGTCTATTGT 57.994 37.500 0.00 0.00 0.00 2.71
2213 2341 6.949352 AAGGGAATTGCATGTAGTCTATTG 57.051 37.500 0.00 0.00 0.00 1.90
2214 2342 7.961326 AAAAGGGAATTGCATGTAGTCTATT 57.039 32.000 0.00 0.00 0.00 1.73
2215 2343 7.961326 AAAAAGGGAATTGCATGTAGTCTAT 57.039 32.000 0.00 0.00 0.00 1.98
2238 2366 5.174035 CGTGCGGATATTTGTTTGTGAAAAA 59.826 36.000 0.00 0.00 0.00 1.94
2239 2367 4.677378 CGTGCGGATATTTGTTTGTGAAAA 59.323 37.500 0.00 0.00 0.00 2.29
2240 2368 4.222886 CGTGCGGATATTTGTTTGTGAAA 58.777 39.130 0.00 0.00 0.00 2.69
2241 2369 3.816091 CGTGCGGATATTTGTTTGTGAA 58.184 40.909 0.00 0.00 0.00 3.18
2242 2370 2.413502 GCGTGCGGATATTTGTTTGTGA 60.414 45.455 0.00 0.00 0.00 3.58
2243 2371 1.910819 GCGTGCGGATATTTGTTTGTG 59.089 47.619 0.00 0.00 0.00 3.33
2244 2372 1.537638 TGCGTGCGGATATTTGTTTGT 59.462 42.857 0.00 0.00 0.00 2.83
2245 2373 1.910819 GTGCGTGCGGATATTTGTTTG 59.089 47.619 0.00 0.00 0.00 2.93
2246 2374 1.810151 AGTGCGTGCGGATATTTGTTT 59.190 42.857 0.00 0.00 0.00 2.83
2247 2375 1.448985 AGTGCGTGCGGATATTTGTT 58.551 45.000 0.00 0.00 0.00 2.83
2248 2376 1.931172 GTAGTGCGTGCGGATATTTGT 59.069 47.619 0.00 0.00 0.00 2.83
2249 2377 1.930503 TGTAGTGCGTGCGGATATTTG 59.069 47.619 0.00 0.00 0.00 2.32
2250 2378 2.303163 TGTAGTGCGTGCGGATATTT 57.697 45.000 0.00 0.00 0.00 1.40
2251 2379 2.135139 CATGTAGTGCGTGCGGATATT 58.865 47.619 0.00 0.00 0.00 1.28
2252 2380 1.339929 TCATGTAGTGCGTGCGGATAT 59.660 47.619 0.00 0.00 34.19 1.63
2253 2381 0.741915 TCATGTAGTGCGTGCGGATA 59.258 50.000 0.00 0.00 34.19 2.59
2254 2382 0.806102 GTCATGTAGTGCGTGCGGAT 60.806 55.000 0.00 0.00 34.19 4.18
2255 2383 1.445410 GTCATGTAGTGCGTGCGGA 60.445 57.895 0.00 0.00 34.19 5.54
2256 2384 1.446099 AGTCATGTAGTGCGTGCGG 60.446 57.895 0.00 0.00 34.19 5.69
2257 2385 1.704010 CAGTCATGTAGTGCGTGCG 59.296 57.895 0.00 0.00 34.19 5.34
2258 2386 1.421485 GCAGTCATGTAGTGCGTGC 59.579 57.895 8.55 0.00 44.36 5.34
2275 2403 9.825109 GGGTCCTTAGAAGATAGATATATTTGC 57.175 37.037 0.00 0.00 0.00 3.68
2280 2408 9.036980 GCTTTGGGTCCTTAGAAGATAGATATA 57.963 37.037 0.00 0.00 0.00 0.86
2281 2409 7.310113 CGCTTTGGGTCCTTAGAAGATAGATAT 60.310 40.741 0.00 0.00 0.00 1.63
2282 2410 6.015350 CGCTTTGGGTCCTTAGAAGATAGATA 60.015 42.308 0.00 0.00 0.00 1.98
2283 2411 5.221541 CGCTTTGGGTCCTTAGAAGATAGAT 60.222 44.000 0.00 0.00 0.00 1.98
2284 2412 4.099573 CGCTTTGGGTCCTTAGAAGATAGA 59.900 45.833 0.00 0.00 0.00 1.98
2285 2413 4.141914 ACGCTTTGGGTCCTTAGAAGATAG 60.142 45.833 0.00 0.00 0.00 2.08
2286 2414 3.773119 ACGCTTTGGGTCCTTAGAAGATA 59.227 43.478 0.00 0.00 0.00 1.98
2307 2435 0.949105 CCGGTAACAGTGGTCTGCAC 60.949 60.000 0.00 0.00 44.77 4.57
2308 2436 1.116536 TCCGGTAACAGTGGTCTGCA 61.117 55.000 0.00 0.00 44.77 4.41
2331 2467 6.458342 GGCTAATCACAAACCTAATGTACAGC 60.458 42.308 0.33 0.00 0.00 4.40
2332 2468 6.597672 TGGCTAATCACAAACCTAATGTACAG 59.402 38.462 0.33 0.00 0.00 2.74
2333 2469 6.373216 GTGGCTAATCACAAACCTAATGTACA 59.627 38.462 0.00 0.00 37.57 2.90
2368 2506 7.314507 AGGTTTATAGCCTCTAGAAACCCTAT 58.685 38.462 26.57 14.24 45.11 2.57
2446 2584 6.462500 CGATCTGACCATGATTAATTCCTCT 58.538 40.000 0.00 0.00 0.00 3.69
2447 2585 5.641209 CCGATCTGACCATGATTAATTCCTC 59.359 44.000 0.00 0.00 0.00 3.71
2449 2587 5.409826 GTCCGATCTGACCATGATTAATTCC 59.590 44.000 6.01 0.00 0.00 3.01
2491 2657 7.430441 AGCAACAAACTACGGTTATCATTTTT 58.570 30.769 0.00 0.00 34.90 1.94
2493 2659 6.569179 AGCAACAAACTACGGTTATCATTT 57.431 33.333 0.00 0.00 34.90 2.32
2548 2714 1.074775 TGGGTCTGCGCCTCAATTT 59.925 52.632 4.18 0.00 0.00 1.82
2577 2746 7.941238 AGTTATTTCCTCATGATTGGTAGGATG 59.059 37.037 0.00 0.00 37.94 3.51
2578 2747 8.050316 AGTTATTTCCTCATGATTGGTAGGAT 57.950 34.615 0.00 0.00 37.94 3.24
2613 2782 8.467598 GGGGATTACCTATTTTCTTTTGTCTTC 58.532 37.037 0.00 0.00 40.03 2.87
2624 2793 5.849140 ACAATGGTGGGGATTACCTATTTT 58.151 37.500 0.00 0.00 39.01 1.82
2668 2837 1.202510 TGTTTTGCCACTGCCATGTTC 60.203 47.619 0.00 0.00 36.33 3.18
2718 3025 2.230994 GACATGCTCAGGCCGAGTCA 62.231 60.000 20.69 18.62 44.33 3.41
2735 3042 8.394667 GGAAAAATTATGAATTCCTTGACGAC 57.605 34.615 2.27 0.00 38.61 4.34
2815 3122 7.936847 AGATACAATTTGGTCGCAATATAAGGA 59.063 33.333 0.78 0.00 0.00 3.36
2857 3165 1.314730 AACAAAAACTCCGTCGGCAT 58.685 45.000 6.34 0.00 0.00 4.40
2889 3198 2.588877 CGCTCGGCCGATCCAAAT 60.589 61.111 31.19 0.00 34.01 2.32
2913 3222 0.387202 CAATGGCAAAACCGGACACA 59.613 50.000 9.46 0.00 43.94 3.72
2914 3223 0.319469 CCAATGGCAAAACCGGACAC 60.319 55.000 9.46 0.00 43.94 3.67
3123 3435 3.574445 CGCTCCGACGACGAGGAT 61.574 66.667 9.28 0.00 42.66 3.24
3175 3487 1.997874 CCTACCAGCAGGCCTTCCT 60.998 63.158 0.00 0.00 45.66 3.36
3214 3526 4.705519 CCAAGCAAAGCCACCGCG 62.706 66.667 0.00 0.00 41.18 6.46
3319 3639 1.837051 ACACGCTGGAGGAGGAACA 60.837 57.895 0.00 0.00 0.00 3.18
3342 3662 0.174845 CCTATCTCACGGCGTGGAAA 59.825 55.000 36.30 23.02 33.87 3.13
3353 3673 1.531840 GAGGAGGCGGCCTATCTCA 60.532 63.158 30.75 0.00 38.73 3.27
3357 3677 2.203714 GAGGAGGAGGCGGCCTAT 60.204 66.667 23.92 14.15 38.73 2.57
3369 3689 4.504916 CTGGGCGCGACAGAGGAG 62.505 72.222 21.83 0.00 38.20 3.69
3422 3742 1.302949 GTCTACCAATGGCAGGGCA 59.697 57.895 0.00 0.00 0.00 5.36
3505 3825 1.500844 CGAGCGACAACGTCTACCT 59.499 57.895 0.00 0.00 41.98 3.08
3533 3853 3.274455 CTCGAGGACGCACTGCAGT 62.274 63.158 15.25 15.25 39.58 4.40
3673 3995 4.379243 CGAAGCACGCCCTCCACT 62.379 66.667 0.00 0.00 34.51 4.00
3781 4103 1.867919 CTCCTGACGTCGGAGCAGTT 61.868 60.000 29.93 0.00 41.39 3.16
3782 4104 2.282251 TCCTGACGTCGGAGCAGT 60.282 61.111 26.01 0.00 0.00 4.40
3806 4128 0.818296 CAAGAAGATCCGAGACGGGT 59.182 55.000 10.25 2.63 46.09 5.28
3811 4133 0.741326 CGAGCCAAGAAGATCCGAGA 59.259 55.000 0.00 0.00 0.00 4.04
3821 4143 3.909258 GAACGTCCGCGAGCCAAGA 62.909 63.158 8.23 0.00 42.00 3.02
3833 4155 1.010462 GTGGCGTGGTTTGAACGTC 60.010 57.895 0.00 0.00 45.56 4.34
3837 4159 2.181521 GTCCGTGGCGTGGTTTGAA 61.182 57.895 0.00 0.00 0.00 2.69
3840 4162 4.224274 TCGTCCGTGGCGTGGTTT 62.224 61.111 0.00 0.00 0.00 3.27
3841 4163 4.955774 GTCGTCCGTGGCGTGGTT 62.956 66.667 0.00 0.00 0.00 3.67
3921 4243 1.452651 CTAGGAGTACCGCGTCCCA 60.453 63.158 4.92 0.00 41.83 4.37
3937 4259 1.252904 GGGACCGTGCAGTACCACTA 61.253 60.000 2.44 0.00 40.89 2.74
4035 4357 3.655810 GACCACGAGGCTGGCTCAG 62.656 68.421 27.71 21.78 39.06 3.35
4114 4436 1.305297 ACATCTGCTCCCTCACCGA 60.305 57.895 0.00 0.00 0.00 4.69
4179 4501 7.414319 CCAAATCGCATCCTTTTTAATTGCAAT 60.414 33.333 5.99 5.99 32.94 3.56
4196 4518 3.006430 TGACTAGAAGTGTCCAAATCGCA 59.994 43.478 0.00 0.00 33.83 5.10
4200 4522 4.319177 GCAGTGACTAGAAGTGTCCAAAT 58.681 43.478 0.00 0.00 33.83 2.32
4208 4530 1.404717 CGCATGGCAGTGACTAGAAGT 60.405 52.381 0.00 0.00 0.00 3.01
4318 4650 3.491581 GTCCACACGAACACGAGAT 57.508 52.632 0.00 0.00 0.00 2.75
4395 4727 1.298788 CGCGGACACAAACCCAAAC 60.299 57.895 0.00 0.00 0.00 2.93
4646 4978 8.143673 ACATCTGTGTGCATCCTAGATATAAT 57.856 34.615 0.00 0.00 37.14 1.28
4742 5079 5.789643 ACCTGCAACACAGTTTTATGAAT 57.210 34.783 0.00 0.00 45.68 2.57
5134 5471 9.793259 TTATATCACTTTTGACCTTTGAAGAGT 57.207 29.630 0.00 0.00 33.38 3.24
5279 5616 4.437239 CTTCAGAAATCCATCTGCGTACT 58.563 43.478 0.00 0.00 45.21 2.73
5369 5706 4.222145 TCGGGCTGTATTAGACTTCTGTTT 59.778 41.667 0.00 0.00 33.66 2.83
5394 5731 3.319972 GTCTTGCCGTCATACCCTATGTA 59.680 47.826 0.00 0.00 37.45 2.29
5415 5752 0.968901 TGGACTCGGCAATACTCCGT 60.969 55.000 1.22 0.00 46.49 4.69
5602 5939 3.026694 AGCTTGATATCCCCAAAAGCAC 58.973 45.455 20.59 0.56 44.45 4.40
5679 6016 8.442632 TTGATATGATGATTTCTCAACTGACC 57.557 34.615 0.00 0.00 34.37 4.02
5680 6017 8.557864 CCTTGATATGATGATTTCTCAACTGAC 58.442 37.037 0.00 0.00 34.37 3.51
5817 6154 3.126831 CAGGAAGCTCACGTAATCCATC 58.873 50.000 1.38 0.00 32.47 3.51
5874 6211 2.415893 GCTTACAATCGCAGCCAACAAT 60.416 45.455 0.00 0.00 0.00 2.71
5881 6218 1.063174 CTGGAAGCTTACAATCGCAGC 59.937 52.381 13.58 0.00 0.00 5.25
5883 6220 2.760634 TCTGGAAGCTTACAATCGCA 57.239 45.000 13.58 0.00 0.00 5.10
5921 6258 2.604132 GCAGTCAAGCTCTTGCAAGTTC 60.604 50.000 25.19 17.31 42.74 3.01
5939 6276 2.424705 AATGCAAGGCACCAACGCAG 62.425 55.000 0.00 0.00 43.04 5.18
5947 6284 1.730064 CATGCTTCAAATGCAAGGCAC 59.270 47.619 0.00 0.00 43.04 5.01
5957 6294 0.523072 GCTCTTCCGCATGCTTCAAA 59.477 50.000 17.13 3.61 0.00 2.69
5968 6305 0.108804 TAGTTTGCCGAGCTCTTCCG 60.109 55.000 12.85 0.00 0.00 4.30
6007 6344 6.620877 TCCCATGAGTGTACAAGTTAATCT 57.379 37.500 0.00 0.00 0.00 2.40
6014 6351 4.637534 CCTTCAATCCCATGAGTGTACAAG 59.362 45.833 0.00 0.00 37.80 3.16
6018 6355 2.575735 TGCCTTCAATCCCATGAGTGTA 59.424 45.455 0.00 0.00 37.80 2.90
6024 6361 3.681593 TTTGTTGCCTTCAATCCCATG 57.318 42.857 0.00 0.00 34.29 3.66
6051 6388 1.882623 CACCAGCTTTTCCTTGGACTC 59.117 52.381 0.00 0.00 35.89 3.36
6170 6507 4.202430 ACAAAAACCTCCTCGATACAACCT 60.202 41.667 0.00 0.00 0.00 3.50
6180 6517 8.561738 TCTTGTTCATATACAAAAACCTCCTC 57.438 34.615 0.00 0.00 37.55 3.71
6190 6527 6.873605 CCGGCTGATATCTTGTTCATATACAA 59.126 38.462 3.98 0.00 36.63 2.41
6199 6536 4.202357 TGCTAATCCGGCTGATATCTTGTT 60.202 41.667 3.98 0.00 31.83 2.83
6253 6590 1.205417 TCGGATCGTAGGAAACCAACC 59.795 52.381 10.89 0.00 0.00 3.77
6258 6595 5.686159 TCTATCTTCGGATCGTAGGAAAC 57.314 43.478 0.00 0.00 36.01 2.78
6262 6599 3.075148 TGCTCTATCTTCGGATCGTAGG 58.925 50.000 0.00 0.00 36.01 3.18
6264 6601 2.484651 GCTGCTCTATCTTCGGATCGTA 59.515 50.000 0.00 0.00 36.01 3.43
6330 6667 1.764134 TGTTCCCGGTAAAGACAGTGT 59.236 47.619 0.00 0.00 0.00 3.55
6343 6680 2.805353 CAGCGTCGTCTGTTCCCG 60.805 66.667 8.07 0.00 0.00 5.14
6344 6681 2.432628 CCAGCGTCGTCTGTTCCC 60.433 66.667 13.22 0.00 32.32 3.97
6345 6682 2.432628 CCCAGCGTCGTCTGTTCC 60.433 66.667 13.22 0.00 32.32 3.62
6346 6683 3.112709 GCCCAGCGTCGTCTGTTC 61.113 66.667 13.22 3.96 32.32 3.18
6366 6703 1.067213 TCCTTCACGCGTGATGATGAA 60.067 47.619 40.51 26.59 39.64 2.57
6376 6713 1.531149 ACTGTTGAAATCCTTCACGCG 59.469 47.619 3.53 3.53 41.34 6.01
6408 6745 2.543238 CCATACGACTACCGGAAAGCTC 60.543 54.545 9.46 4.97 43.93 4.09
6409 6746 1.407979 CCATACGACTACCGGAAAGCT 59.592 52.381 9.46 0.00 43.93 3.74
6411 6748 2.026641 TCCCATACGACTACCGGAAAG 58.973 52.381 9.46 7.88 43.93 2.62
6415 6752 1.396653 AACTCCCATACGACTACCGG 58.603 55.000 0.00 0.00 43.93 5.28
6418 6755 8.385858 GTTCAAATAAAACTCCCATACGACTAC 58.614 37.037 0.00 0.00 0.00 2.73
6421 6758 6.549061 GGTTCAAATAAAACTCCCATACGAC 58.451 40.000 0.00 0.00 0.00 4.34
6475 6815 4.672024 GCTTTCTGATGAAGTCGTCGAGTA 60.672 45.833 2.34 0.00 34.69 2.59
6480 6820 2.003301 GGGCTTTCTGATGAAGTCGTC 58.997 52.381 0.00 0.00 33.28 4.20
6482 6822 2.099141 TGGGCTTTCTGATGAAGTCG 57.901 50.000 0.00 0.00 33.28 4.18
6483 6823 4.704057 AGATTTGGGCTTTCTGATGAAGTC 59.296 41.667 0.00 0.00 33.28 3.01
6492 6832 0.893447 GCAGCAGATTTGGGCTTTCT 59.107 50.000 0.00 0.00 38.56 2.52
6493 6833 0.457337 CGCAGCAGATTTGGGCTTTC 60.457 55.000 0.00 0.00 38.56 2.62
6693 7033 5.795939 CCATATCTATTTGCTCGTCTCGTAC 59.204 44.000 0.00 0.00 0.00 3.67
6792 7132 8.348285 TGAAATAGATGACCGGAAAAAGAATT 57.652 30.769 9.46 0.00 0.00 2.17
6916 7256 3.561725 CCCGAATAGAAATGTGGAGCTTC 59.438 47.826 0.00 0.00 0.00 3.86
6952 7295 2.031682 CACAAGAGTACACCAGCTTTGC 60.032 50.000 0.00 0.00 0.00 3.68
6994 7337 6.663523 TGATACTTCCAGACATGTACAGAAGA 59.336 38.462 26.06 15.73 35.73 2.87
7003 7346 6.980978 ACTAATTCGTGATACTTCCAGACATG 59.019 38.462 0.00 0.00 0.00 3.21
7088 7431 8.522830 CAATCTACTTATGCCCAAAAGAAAAGA 58.477 33.333 0.00 0.00 0.00 2.52
7089 7432 8.306761 ACAATCTACTTATGCCCAAAAGAAAAG 58.693 33.333 0.00 0.00 0.00 2.27
7093 7436 6.480763 TGACAATCTACTTATGCCCAAAAGA 58.519 36.000 0.00 0.00 0.00 2.52
7143 7539 8.689251 TCAAAGTCTCAATCTAAGAATACACG 57.311 34.615 0.00 0.00 0.00 4.49
7288 7686 4.806892 TGATCCAAGGGCACAATGAATAT 58.193 39.130 0.00 0.00 0.00 1.28
7297 7695 2.171448 AGTGAGTATGATCCAAGGGCAC 59.829 50.000 0.00 0.00 0.00 5.01
7317 7715 6.150976 TCCTCACAAACATTTAACTATGGCAG 59.849 38.462 0.00 0.00 0.00 4.85
7425 7825 9.123902 CTCCATATATGTTTTCTTGGATGTGAA 57.876 33.333 11.73 0.00 33.10 3.18
7463 7868 8.961294 TTTCACATTTTTCATCCAAGTTGAAT 57.039 26.923 3.87 0.00 33.37 2.57
7506 7911 8.416329 GCAGGGAACAATCTAATGATGTTATTT 58.584 33.333 0.00 0.00 32.44 1.40
7507 7912 7.560991 TGCAGGGAACAATCTAATGATGTTATT 59.439 33.333 0.00 0.00 32.44 1.40
7508 7913 7.062322 TGCAGGGAACAATCTAATGATGTTAT 58.938 34.615 0.00 0.00 32.44 1.89
7509 7914 6.422333 TGCAGGGAACAATCTAATGATGTTA 58.578 36.000 0.00 0.00 32.44 2.41
7604 8009 7.073342 AGTCTTTTAATACGCATCTTTGACC 57.927 36.000 0.00 0.00 0.00 4.02
7628 8033 7.105588 AGACTCACAATAAACATGCTGACATA 58.894 34.615 0.00 0.00 33.67 2.29
7629 8034 5.942236 AGACTCACAATAAACATGCTGACAT 59.058 36.000 0.00 0.00 36.79 3.06
7760 8165 3.649073 TGACGTGGTCTTTGATGTACAG 58.351 45.455 0.33 0.00 33.15 2.74
7783 8188 3.788434 AAACACAAATCTGTCTACGCG 57.212 42.857 3.53 3.53 31.64 6.01
7871 8276 1.366854 GGCGAACTTGGGATCCGTTC 61.367 60.000 16.78 16.78 35.04 3.95
7881 8286 2.335712 GGCTTCTGGGGCGAACTTG 61.336 63.158 0.00 0.00 0.00 3.16
7882 8287 2.034221 GGCTTCTGGGGCGAACTT 59.966 61.111 0.00 0.00 0.00 2.66
7888 8293 0.455815 CAAATAACGGCTTCTGGGGC 59.544 55.000 0.00 0.00 0.00 5.80
7889 8294 2.122783 TCAAATAACGGCTTCTGGGG 57.877 50.000 0.00 0.00 0.00 4.96
7890 8295 4.718940 ATTTCAAATAACGGCTTCTGGG 57.281 40.909 0.00 0.00 0.00 4.45
7891 8296 8.527567 TTTTAATTTCAAATAACGGCTTCTGG 57.472 30.769 0.00 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.