Multiple sequence alignment - TraesCS7A01G498700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G498700 chr7A 100.000 2201 0 0 1 2201 689251468 689253668 0.000000e+00 4065.0
1 TraesCS7A01G498700 chr7A 87.482 711 72 14 536 1235 680244344 680245048 0.000000e+00 804.0
2 TraesCS7A01G498700 chr7A 91.525 59 5 0 2143 2201 664118576 664118634 5.040000e-12 82.4
3 TraesCS7A01G498700 chr7D 89.150 1364 95 33 533 1874 596092635 596093967 0.000000e+00 1650.0
4 TraesCS7A01G498700 chr7D 90.194 775 59 12 540 1304 588409063 588409830 0.000000e+00 994.0
5 TraesCS7A01G498700 chr7D 84.973 925 88 26 536 1426 588472011 588471104 0.000000e+00 891.0
6 TraesCS7A01G498700 chr7D 90.964 332 17 4 179 500 596092311 596092639 3.360000e-118 435.0
7 TraesCS7A01G498700 chr7D 92.784 97 7 0 88 184 481573846 481573750 8.190000e-30 141.0
8 TraesCS7A01G498700 chr7D 96.875 32 1 0 412 443 588435197 588435166 1.000000e-03 54.7
9 TraesCS7A01G498700 chr7B 92.005 888 53 7 533 1403 674194088 674194974 0.000000e+00 1230.0
10 TraesCS7A01G498700 chr7B 86.957 897 89 21 536 1419 661716435 661717316 0.000000e+00 983.0
11 TraesCS7A01G498700 chr7B 86.927 895 92 15 538 1419 661998765 661999647 0.000000e+00 981.0
12 TraesCS7A01G498700 chr7B 89.894 752 59 10 540 1282 662311719 662310976 0.000000e+00 952.0
13 TraesCS7A01G498700 chr7B 91.679 673 41 11 538 1201 662010203 662009537 0.000000e+00 918.0
14 TraesCS7A01G498700 chr7B 88.663 688 62 10 537 1212 661468909 661469592 0.000000e+00 824.0
15 TraesCS7A01G498700 chr7B 90.022 451 39 5 831 1279 661913343 661913789 1.470000e-161 579.0
16 TraesCS7A01G498700 chr7B 89.545 440 26 9 1446 1874 674196674 674197104 6.910000e-150 540.0
17 TraesCS7A01G498700 chr7B 92.908 141 7 2 268 408 674193777 674193914 3.710000e-48 202.0
18 TraesCS7A01G498700 chr7B 83.333 204 29 4 179 379 661911727 661911928 1.340000e-42 183.0
19 TraesCS7A01G498700 chr7B 90.291 103 8 2 87 187 412543666 412543768 1.370000e-27 134.0
20 TraesCS7A01G498700 chr7B 93.182 88 6 0 179 266 674193583 674193670 1.770000e-26 130.0
21 TraesCS7A01G498700 chr7B 85.217 115 14 2 248 362 661707437 661707548 4.970000e-22 115.0
22 TraesCS7A01G498700 chr7B 90.476 84 5 2 1280 1362 662310946 662310865 8.310000e-20 108.0
23 TraesCS7A01G498700 chr7B 90.789 76 6 1 179 254 661598318 661598392 1.390000e-17 100.0
24 TraesCS7A01G498700 chr7B 96.429 56 2 0 2146 2201 674186615 674186560 2.330000e-15 93.5
25 TraesCS7A01G498700 chr7B 92.063 63 5 0 1392 1454 674196103 674196165 3.010000e-14 89.8
26 TraesCS7A01G498700 chr7B 94.545 55 3 0 2147 2201 723758859 723758805 3.890000e-13 86.1
27 TraesCS7A01G498700 chr7B 90.476 63 4 2 2139 2201 644538070 644538130 5.040000e-12 82.4
28 TraesCS7A01G498700 chr6B 88.450 329 30 2 1214 1534 637179819 637180147 7.370000e-105 390.0
29 TraesCS7A01G498700 chr6B 87.847 288 26 3 1595 1874 637180149 637180435 1.630000e-86 329.0
30 TraesCS7A01G498700 chr6B 92.632 95 7 0 93 187 639915411 639915317 1.060000e-28 137.0
31 TraesCS7A01G498700 chr6B 93.220 59 3 1 2143 2201 696244750 696244807 3.890000e-13 86.1
32 TraesCS7A01G498700 chr1B 87.240 337 35 2 1223 1551 468218422 468218086 5.740000e-101 377.0
33 TraesCS7A01G498700 chr1B 90.034 291 19 4 1593 1874 468218089 468217800 3.450000e-98 368.0
34 TraesCS7A01G498700 chr1B 93.548 93 6 0 90 182 625931369 625931461 2.950000e-29 139.0
35 TraesCS7A01G498700 chr1B 94.643 56 2 1 2146 2201 629666829 629666883 3.890000e-13 86.1
36 TraesCS7A01G498700 chr3D 93.522 247 15 1 1873 2118 94886603 94886849 1.240000e-97 366.0
37 TraesCS7A01G498700 chr3D 94.191 241 13 1 1873 2112 129016584 129016824 1.240000e-97 366.0
38 TraesCS7A01G498700 chr3D 93.173 249 15 2 1867 2113 327381964 327381716 4.470000e-97 364.0
39 TraesCS7A01G498700 chr3D 92.632 95 6 1 95 188 475298913 475298819 3.810000e-28 135.0
40 TraesCS7A01G498700 chr2D 94.191 241 12 2 1873 2112 642827074 642827313 1.240000e-97 366.0
41 TraesCS7A01G498700 chr1D 94.191 241 13 1 1873 2112 16231993 16232233 1.240000e-97 366.0
42 TraesCS7A01G498700 chr1D 91.667 96 7 1 91 185 287427985 287427890 4.930000e-27 132.0
43 TraesCS7A01G498700 chr5D 93.496 246 15 1 1870 2114 112357929 112358174 4.470000e-97 364.0
44 TraesCS7A01G498700 chr5D 92.000 100 7 1 92 190 44425353 44425254 2.950000e-29 139.0
45 TraesCS7A01G498700 chr4D 93.496 246 15 1 1870 2114 30506423 30506668 4.470000e-97 364.0
46 TraesCS7A01G498700 chr4D 93.173 249 15 2 1865 2112 490889399 490889646 4.470000e-97 364.0
47 TraesCS7A01G498700 chr4D 95.402 87 4 0 94 180 259809000 259809086 2.950000e-29 139.0
48 TraesCS7A01G498700 chr4D 91.753 97 8 0 87 183 191234792 191234888 3.810000e-28 135.0
49 TraesCS7A01G498700 chr4D 91.837 98 7 1 91 187 320593825 320593728 3.810000e-28 135.0
50 TraesCS7A01G498700 chr4D 89.216 102 9 2 89 189 133475416 133475316 2.290000e-25 126.0
51 TraesCS7A01G498700 chr6D 93.145 248 15 2 1870 2116 388228701 388228947 1.610000e-96 363.0
52 TraesCS7A01G498700 chr6D 91.089 101 9 0 93 193 440409500 440409600 1.060000e-28 137.0
53 TraesCS7A01G498700 chr6D 93.333 90 6 0 93 182 129165093 129165182 1.370000e-27 134.0
54 TraesCS7A01G498700 chr6D 91.667 96 7 1 89 183 206553861 206553956 4.930000e-27 132.0
55 TraesCS7A01G498700 chr6D 91.579 95 7 1 96 189 271233443 271233537 1.770000e-26 130.0
56 TraesCS7A01G498700 chr2A 100.000 85 0 0 96 180 753716269 753716353 8.140000e-35 158.0
57 TraesCS7A01G498700 chr3A 97.727 88 2 0 93 180 506803650 506803737 3.780000e-33 152.0
58 TraesCS7A01G498700 chr3A 90.909 110 8 2 81 188 220743748 220743639 1.760000e-31 147.0
59 TraesCS7A01G498700 chr3A 91.346 104 7 2 83 185 8632777 8632675 8.190000e-30 141.0
60 TraesCS7A01G498700 chr1A 91.818 110 6 3 85 192 41368719 41368611 1.360000e-32 150.0
61 TraesCS7A01G498700 chrUn 92.784 97 7 0 93 189 77489855 77489759 8.190000e-30 141.0
62 TraesCS7A01G498700 chrUn 92.553 94 7 0 88 181 301349934 301350027 3.810000e-28 135.0
63 TraesCS7A01G498700 chrUn 92.553 94 7 0 88 181 348118301 348118208 3.810000e-28 135.0
64 TraesCS7A01G498700 chrUn 91.398 93 8 0 96 188 316007525 316007617 6.380000e-26 128.0
65 TraesCS7A01G498700 chrUn 89.000 100 9 2 84 183 286308695 286308792 2.970000e-24 122.0
66 TraesCS7A01G498700 chrUn 89.000 100 9 2 84 183 286314978 286315075 2.970000e-24 122.0
67 TraesCS7A01G498700 chrUn 89.000 100 9 2 84 183 295781577 295781480 2.970000e-24 122.0
68 TraesCS7A01G498700 chrUn 90.323 93 9 0 92 184 359670008 359670100 2.970000e-24 122.0
69 TraesCS7A01G498700 chrUn 89.474 95 9 1 96 189 326632952 326633046 3.840000e-23 119.0
70 TraesCS7A01G498700 chrUn 85.981 107 13 2 88 194 320256188 320256084 1.790000e-21 113.0
71 TraesCS7A01G498700 chrUn 98.000 50 1 0 2151 2200 82234272 82234223 1.080000e-13 87.9
72 TraesCS7A01G498700 chr2B 92.708 96 7 0 88 183 550399779 550399684 2.950000e-29 139.0
73 TraesCS7A01G498700 chr6A 92.553 94 7 0 90 183 286321109 286321202 3.810000e-28 135.0
74 TraesCS7A01G498700 chr6A 88.991 109 9 3 80 186 51480517 51480624 4.930000e-27 132.0
75 TraesCS7A01G498700 chr4B 90.000 100 9 1 86 184 652887470 652887569 6.380000e-26 128.0
76 TraesCS7A01G498700 chr5B 94.643 56 2 1 2146 2201 689871355 689871301 3.890000e-13 86.1
77 TraesCS7A01G498700 chr3B 93.103 58 3 1 2145 2201 188231364 188231421 1.400000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G498700 chr7A 689251468 689253668 2200 False 4065.00 4065 100.0000 1 2201 1 chr7A.!!$F3 2200
1 TraesCS7A01G498700 chr7A 680244344 680245048 704 False 804.00 804 87.4820 536 1235 1 chr7A.!!$F2 699
2 TraesCS7A01G498700 chr7D 596092311 596093967 1656 False 1042.50 1650 90.0570 179 1874 2 chr7D.!!$F2 1695
3 TraesCS7A01G498700 chr7D 588409063 588409830 767 False 994.00 994 90.1940 540 1304 1 chr7D.!!$F1 764
4 TraesCS7A01G498700 chr7D 588471104 588472011 907 True 891.00 891 84.9730 536 1426 1 chr7D.!!$R3 890
5 TraesCS7A01G498700 chr7B 661716435 661717316 881 False 983.00 983 86.9570 536 1419 1 chr7B.!!$F6 883
6 TraesCS7A01G498700 chr7B 661998765 661999647 882 False 981.00 981 86.9270 538 1419 1 chr7B.!!$F7 881
7 TraesCS7A01G498700 chr7B 662009537 662010203 666 True 918.00 918 91.6790 538 1201 1 chr7B.!!$R1 663
8 TraesCS7A01G498700 chr7B 661468909 661469592 683 False 824.00 824 88.6630 537 1212 1 chr7B.!!$F3 675
9 TraesCS7A01G498700 chr7B 662310865 662311719 854 True 530.00 952 90.1850 540 1362 2 chr7B.!!$R4 822
10 TraesCS7A01G498700 chr7B 674193583 674197104 3521 False 438.36 1230 91.9406 179 1874 5 chr7B.!!$F9 1695
11 TraesCS7A01G498700 chr7B 661911727 661913789 2062 False 381.00 579 86.6775 179 1279 2 chr7B.!!$F8 1100
12 TraesCS7A01G498700 chr6B 637179819 637180435 616 False 359.50 390 88.1485 1214 1874 2 chr6B.!!$F2 660
13 TraesCS7A01G498700 chr1B 468217800 468218422 622 True 372.50 377 88.6370 1223 1874 2 chr1B.!!$R1 651

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
502 1413 0.107017 CTCTCCGCCCACCATTCAAT 60.107 55.0 0.0 0.0 0.0 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2070 4914 0.032017 AGTGCTTCCTCTATCCCCGT 60.032 55.0 0.0 0.0 0.0 5.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.932619 TTTCCAGTAGTATGCTTGCTAGA 57.067 39.130 0.00 0.00 0.00 2.43
23 24 5.932619 TTCCAGTAGTATGCTTGCTAGAA 57.067 39.130 0.00 0.00 0.00 2.10
24 25 6.485830 TTCCAGTAGTATGCTTGCTAGAAT 57.514 37.500 0.00 0.00 0.00 2.40
25 26 6.485830 TCCAGTAGTATGCTTGCTAGAATT 57.514 37.500 0.00 0.00 0.00 2.17
26 27 6.283694 TCCAGTAGTATGCTTGCTAGAATTG 58.716 40.000 0.00 0.00 0.00 2.32
27 28 6.051717 CCAGTAGTATGCTTGCTAGAATTGT 58.948 40.000 0.00 0.00 0.00 2.71
28 29 6.540189 CCAGTAGTATGCTTGCTAGAATTGTT 59.460 38.462 0.00 0.00 0.00 2.83
29 30 7.254590 CCAGTAGTATGCTTGCTAGAATTGTTC 60.255 40.741 0.00 0.00 0.00 3.18
30 31 7.493971 CAGTAGTATGCTTGCTAGAATTGTTCT 59.506 37.037 0.00 0.00 43.72 3.01
31 32 8.043710 AGTAGTATGCTTGCTAGAATTGTTCTT 58.956 33.333 0.00 0.00 41.14 2.52
32 33 9.314321 GTAGTATGCTTGCTAGAATTGTTCTTA 57.686 33.333 0.00 0.00 41.14 2.10
33 34 8.202745 AGTATGCTTGCTAGAATTGTTCTTAC 57.797 34.615 0.00 0.00 41.14 2.34
34 35 8.043710 AGTATGCTTGCTAGAATTGTTCTTACT 58.956 33.333 0.00 0.00 41.14 2.24
35 36 7.693969 ATGCTTGCTAGAATTGTTCTTACTT 57.306 32.000 0.00 0.00 41.14 2.24
36 37 7.510549 TGCTTGCTAGAATTGTTCTTACTTT 57.489 32.000 0.00 0.00 41.14 2.66
37 38 8.615878 TGCTTGCTAGAATTGTTCTTACTTTA 57.384 30.769 0.00 0.00 41.14 1.85
38 39 9.231297 TGCTTGCTAGAATTGTTCTTACTTTAT 57.769 29.630 0.00 0.00 41.14 1.40
76 77 8.443953 ACTAGAATATTGTTCTTGCATCCTTC 57.556 34.615 0.00 0.00 0.00 3.46
77 78 8.270744 ACTAGAATATTGTTCTTGCATCCTTCT 58.729 33.333 0.00 0.00 0.00 2.85
78 79 7.951347 AGAATATTGTTCTTGCATCCTTCTT 57.049 32.000 0.00 0.00 0.00 2.52
80 81 9.638176 AGAATATTGTTCTTGCATCCTTCTTAT 57.362 29.630 0.00 0.00 0.00 1.73
86 87 9.912634 TTGTTCTTGCATCCTTCTTATTTAAAG 57.087 29.630 0.00 0.00 0.00 1.85
87 88 9.077885 TGTTCTTGCATCCTTCTTATTTAAAGT 57.922 29.630 0.00 0.00 0.00 2.66
105 106 9.828039 ATTTAAAGTAAATTAGTACTCCCTCCG 57.172 33.333 0.00 0.00 34.91 4.63
106 107 6.864151 AAAGTAAATTAGTACTCCCTCCGT 57.136 37.500 0.00 0.00 33.05 4.69
107 108 7.961326 AAAGTAAATTAGTACTCCCTCCGTA 57.039 36.000 0.00 0.00 33.05 4.02
108 109 7.961326 AAGTAAATTAGTACTCCCTCCGTAA 57.039 36.000 0.00 0.00 33.05 3.18
109 110 7.961326 AGTAAATTAGTACTCCCTCCGTAAA 57.039 36.000 0.00 0.00 27.56 2.01
110 111 8.544687 AGTAAATTAGTACTCCCTCCGTAAAT 57.455 34.615 0.00 0.00 27.56 1.40
111 112 8.985922 AGTAAATTAGTACTCCCTCCGTAAATT 58.014 33.333 0.00 0.00 27.56 1.82
122 123 8.312564 ACTCCCTCCGTAAATTAATATAAGAGC 58.687 37.037 0.00 0.00 0.00 4.09
123 124 8.197592 TCCCTCCGTAAATTAATATAAGAGCA 57.802 34.615 0.00 0.00 0.00 4.26
124 125 8.822805 TCCCTCCGTAAATTAATATAAGAGCAT 58.177 33.333 0.00 0.00 0.00 3.79
125 126 9.449719 CCCTCCGTAAATTAATATAAGAGCATT 57.550 33.333 0.00 0.00 0.00 3.56
274 388 6.045955 AGCTCTCTAAACTTATGCTTGCTAC 58.954 40.000 0.00 0.00 0.00 3.58
391 507 3.613432 GCTCCTGAAAGCAAAATGTCCAG 60.613 47.826 0.00 0.00 42.05 3.86
443 1353 2.747855 GCCACGGAGAAAGCCCAG 60.748 66.667 0.00 0.00 0.00 4.45
446 1356 0.955919 CCACGGAGAAAGCCCAGTTC 60.956 60.000 0.00 0.00 0.00 3.01
450 1361 1.723220 GGAGAAAGCCCAGTTCGTAC 58.277 55.000 0.00 0.00 0.00 3.67
462 1373 0.248377 GTTCGTACTCCGTATGCGCT 60.248 55.000 9.73 0.00 37.94 5.92
498 1409 3.329889 TGCTCTCCGCCCACCATT 61.330 61.111 0.00 0.00 38.05 3.16
499 1410 2.514824 GCTCTCCGCCCACCATTC 60.515 66.667 0.00 0.00 0.00 2.67
502 1413 0.107017 CTCTCCGCCCACCATTCAAT 60.107 55.000 0.00 0.00 0.00 2.57
503 1414 0.107214 TCTCCGCCCACCATTCAATC 60.107 55.000 0.00 0.00 0.00 2.67
504 1415 1.077068 TCCGCCCACCATTCAATCC 60.077 57.895 0.00 0.00 0.00 3.01
505 1416 2.480610 CCGCCCACCATTCAATCCG 61.481 63.158 0.00 0.00 0.00 4.18
508 1419 1.379710 CCCACCATTCAATCCGCCA 60.380 57.895 0.00 0.00 0.00 5.69
509 1420 1.666209 CCCACCATTCAATCCGCCAC 61.666 60.000 0.00 0.00 0.00 5.01
510 1421 1.429021 CACCATTCAATCCGCCACG 59.571 57.895 0.00 0.00 0.00 4.94
511 1422 1.002624 ACCATTCAATCCGCCACGT 60.003 52.632 0.00 0.00 0.00 4.49
514 1425 1.616620 CATTCAATCCGCCACGTTTG 58.383 50.000 0.00 0.00 0.00 2.93
517 1428 0.250124 TCAATCCGCCACGTTTGTCT 60.250 50.000 0.00 0.00 0.00 3.41
518 1429 0.165944 CAATCCGCCACGTTTGTCTC 59.834 55.000 0.00 0.00 0.00 3.36
519 1430 0.250124 AATCCGCCACGTTTGTCTCA 60.250 50.000 0.00 0.00 0.00 3.27
520 1431 0.250124 ATCCGCCACGTTTGTCTCAA 60.250 50.000 0.00 0.00 0.00 3.02
521 1432 0.462225 TCCGCCACGTTTGTCTCAAA 60.462 50.000 0.00 0.00 0.00 2.69
522 1433 0.378962 CCGCCACGTTTGTCTCAAAA 59.621 50.000 0.00 0.00 0.00 2.44
523 1434 1.202200 CCGCCACGTTTGTCTCAAAAA 60.202 47.619 0.00 0.00 0.00 1.94
665 1581 1.153289 CCCTCCACCAATCAGAGCG 60.153 63.158 0.00 0.00 0.00 5.03
811 1756 2.943978 CGGAGAAGAAGCCGGTGGT 61.944 63.158 1.90 0.00 43.67 4.16
1044 2175 6.657966 TCATCAATGACATCTTTGAGAAGCTT 59.342 34.615 0.00 0.00 41.33 3.74
1113 2244 1.381327 GTCCCGGGAGATCCAGACA 60.381 63.158 27.72 0.00 37.99 3.41
1242 2373 2.429907 CCGATCGATGCCGCTCTC 60.430 66.667 18.66 0.00 35.37 3.20
1265 2398 7.553402 TCTCTAGTTAGTTAGCTGTTCCTACTG 59.447 40.741 0.00 0.00 0.00 2.74
1323 2488 7.986085 AGTAACAGTGCTGATTTATTCTGTT 57.014 32.000 6.17 11.88 44.51 3.16
1325 2490 8.850156 AGTAACAGTGCTGATTTATTCTGTTTT 58.150 29.630 12.32 1.77 43.01 2.43
1398 2570 6.882656 AGAGTTCTTGCTATGATCTTGCTTA 58.117 36.000 0.00 0.00 0.00 3.09
1449 3762 7.525688 TCGTGTATGAGTGAAATTCAGATTC 57.474 36.000 0.00 0.00 35.47 2.52
1473 4303 2.367894 TCCAGGAGCTCTGCATGAATAG 59.632 50.000 14.64 0.00 42.05 1.73
1498 4328 3.969117 TTCTGCACATCACACTGTTTC 57.031 42.857 0.00 0.00 0.00 2.78
1522 4352 2.288395 GGTTTTGTACAGCAGCTGCATT 60.288 45.455 38.24 26.42 45.16 3.56
1525 4355 1.730501 TGTACAGCAGCTGCATTCTC 58.269 50.000 38.24 23.40 45.16 2.87
1542 4374 8.846943 TGCATTCTCTGTCTTTAAATGTCTTA 57.153 30.769 0.00 0.00 31.52 2.10
1558 4390 8.409358 AAATGTCTTATTTTAGCAACACTCCT 57.591 30.769 0.00 0.00 0.00 3.69
1559 4391 6.801539 TGTCTTATTTTAGCAACACTCCTG 57.198 37.500 0.00 0.00 0.00 3.86
1560 4392 5.705441 TGTCTTATTTTAGCAACACTCCTGG 59.295 40.000 0.00 0.00 0.00 4.45
1561 4393 4.700213 TCTTATTTTAGCAACACTCCTGGC 59.300 41.667 0.00 0.00 0.00 4.85
1562 4394 2.656947 TTTTAGCAACACTCCTGGCT 57.343 45.000 0.00 0.00 40.26 4.75
1563 4395 1.896220 TTTAGCAACACTCCTGGCTG 58.104 50.000 0.00 0.00 37.17 4.85
1564 4396 0.764890 TTAGCAACACTCCTGGCTGT 59.235 50.000 0.00 0.00 37.17 4.40
1565 4397 0.321671 TAGCAACACTCCTGGCTGTC 59.678 55.000 0.00 0.00 37.17 3.51
1569 4401 0.036952 AACACTCCTGGCTGTCGATG 60.037 55.000 0.00 0.00 0.00 3.84
1582 4414 4.261783 GGCTGTCGATGATTGATCTACTGA 60.262 45.833 0.00 0.00 31.17 3.41
1643 4475 5.448360 GCAAAGTAGAGAATGATTGGAGCAC 60.448 44.000 0.00 0.00 0.00 4.40
1698 4533 2.111756 CTTTGTTTTCTGTCAGTGCGC 58.888 47.619 0.00 0.00 0.00 6.09
1711 4546 1.398390 CAGTGCGCCTATGTTTTCTCC 59.602 52.381 4.18 0.00 0.00 3.71
1717 4552 3.002759 GCGCCTATGTTTTCTCCATCTTC 59.997 47.826 0.00 0.00 0.00 2.87
1727 4562 1.134699 TCTCCATCTTCACGACATGGC 60.135 52.381 0.00 0.00 37.57 4.40
1742 4577 2.352651 ACATGGCGATCTTGAATCGTTG 59.647 45.455 8.96 7.23 42.90 4.10
1792 4631 0.647410 CATACGTGCTCTTTGGCGAG 59.353 55.000 0.00 0.00 34.52 5.03
1876 4720 6.526566 AAACTGAATGTTTCTCACGTACTC 57.473 37.500 0.00 0.00 44.81 2.59
1877 4721 4.557205 ACTGAATGTTTCTCACGTACTCC 58.443 43.478 0.00 0.00 0.00 3.85
1878 4722 3.921677 TGAATGTTTCTCACGTACTCCC 58.078 45.455 0.00 0.00 0.00 4.30
1879 4723 3.576982 TGAATGTTTCTCACGTACTCCCT 59.423 43.478 0.00 0.00 0.00 4.20
1880 4724 3.870633 ATGTTTCTCACGTACTCCCTC 57.129 47.619 0.00 0.00 0.00 4.30
1881 4725 1.891150 TGTTTCTCACGTACTCCCTCC 59.109 52.381 0.00 0.00 0.00 4.30
1882 4726 1.891150 GTTTCTCACGTACTCCCTCCA 59.109 52.381 0.00 0.00 0.00 3.86
1883 4727 2.496470 GTTTCTCACGTACTCCCTCCAT 59.504 50.000 0.00 0.00 0.00 3.41
1884 4728 2.526888 TCTCACGTACTCCCTCCATT 57.473 50.000 0.00 0.00 0.00 3.16
1885 4729 2.376109 TCTCACGTACTCCCTCCATTC 58.624 52.381 0.00 0.00 0.00 2.67
1886 4730 1.409427 CTCACGTACTCCCTCCATTCC 59.591 57.143 0.00 0.00 0.00 3.01
1887 4731 1.191535 CACGTACTCCCTCCATTCCA 58.808 55.000 0.00 0.00 0.00 3.53
1888 4732 1.553248 CACGTACTCCCTCCATTCCAA 59.447 52.381 0.00 0.00 0.00 3.53
1889 4733 2.027561 CACGTACTCCCTCCATTCCAAA 60.028 50.000 0.00 0.00 0.00 3.28
1890 4734 2.844348 ACGTACTCCCTCCATTCCAAAT 59.156 45.455 0.00 0.00 0.00 2.32
1891 4735 3.265995 ACGTACTCCCTCCATTCCAAATT 59.734 43.478 0.00 0.00 0.00 1.82
1892 4736 4.472108 ACGTACTCCCTCCATTCCAAATTA 59.528 41.667 0.00 0.00 0.00 1.40
1893 4737 5.132144 ACGTACTCCCTCCATTCCAAATTAT 59.868 40.000 0.00 0.00 0.00 1.28
1894 4738 6.328148 ACGTACTCCCTCCATTCCAAATTATA 59.672 38.462 0.00 0.00 0.00 0.98
1895 4739 6.874134 CGTACTCCCTCCATTCCAAATTATAG 59.126 42.308 0.00 0.00 0.00 1.31
1896 4740 6.848562 ACTCCCTCCATTCCAAATTATAGT 57.151 37.500 0.00 0.00 0.00 2.12
1897 4741 6.605119 ACTCCCTCCATTCCAAATTATAGTG 58.395 40.000 0.00 0.00 0.00 2.74
1898 4742 6.160459 ACTCCCTCCATTCCAAATTATAGTGT 59.840 38.462 0.00 0.00 0.00 3.55
1899 4743 6.364701 TCCCTCCATTCCAAATTATAGTGTG 58.635 40.000 0.00 0.00 0.00 3.82
1900 4744 6.069088 TCCCTCCATTCCAAATTATAGTGTGT 60.069 38.462 0.00 0.00 0.00 3.72
1901 4745 6.263168 CCCTCCATTCCAAATTATAGTGTGTC 59.737 42.308 0.00 0.00 0.00 3.67
1902 4746 6.263168 CCTCCATTCCAAATTATAGTGTGTCC 59.737 42.308 0.00 0.00 0.00 4.02
1903 4747 5.820423 TCCATTCCAAATTATAGTGTGTCCG 59.180 40.000 0.00 0.00 0.00 4.79
1904 4748 5.505654 CCATTCCAAATTATAGTGTGTCCGC 60.506 44.000 0.00 0.00 0.00 5.54
1905 4749 3.191669 TCCAAATTATAGTGTGTCCGCG 58.808 45.455 0.00 0.00 0.00 6.46
1906 4750 2.286184 CCAAATTATAGTGTGTCCGCGC 60.286 50.000 0.00 0.00 0.00 6.86
1907 4751 2.596904 AATTATAGTGTGTCCGCGCT 57.403 45.000 5.56 0.00 0.00 5.92
1908 4752 2.596904 ATTATAGTGTGTCCGCGCTT 57.403 45.000 5.56 0.00 0.00 4.68
1909 4753 1.917273 TTATAGTGTGTCCGCGCTTC 58.083 50.000 5.56 0.00 0.00 3.86
1910 4754 0.101759 TATAGTGTGTCCGCGCTTCC 59.898 55.000 5.56 0.00 0.00 3.46
1911 4755 2.573609 ATAGTGTGTCCGCGCTTCCC 62.574 60.000 5.56 0.00 0.00 3.97
1912 4756 4.980805 GTGTGTCCGCGCTTCCCA 62.981 66.667 5.56 0.00 0.00 4.37
1913 4757 4.680237 TGTGTCCGCGCTTCCCAG 62.680 66.667 5.56 0.00 0.00 4.45
1914 4758 4.373116 GTGTCCGCGCTTCCCAGA 62.373 66.667 5.56 0.00 0.00 3.86
1915 4759 3.390521 TGTCCGCGCTTCCCAGAT 61.391 61.111 5.56 0.00 0.00 2.90
1916 4760 2.586357 GTCCGCGCTTCCCAGATC 60.586 66.667 5.56 0.00 0.00 2.75
1917 4761 4.207281 TCCGCGCTTCCCAGATCG 62.207 66.667 5.56 0.00 0.00 3.69
1918 4762 4.207281 CCGCGCTTCCCAGATCGA 62.207 66.667 5.56 0.00 0.00 3.59
1919 4763 2.202743 CGCGCTTCCCAGATCGAA 60.203 61.111 5.56 0.00 0.00 3.71
1920 4764 2.517450 CGCGCTTCCCAGATCGAAC 61.517 63.158 5.56 0.00 0.00 3.95
1921 4765 1.153549 GCGCTTCCCAGATCGAACT 60.154 57.895 0.00 0.00 0.00 3.01
1922 4766 0.741221 GCGCTTCCCAGATCGAACTT 60.741 55.000 0.00 0.00 0.00 2.66
1923 4767 1.726853 CGCTTCCCAGATCGAACTTT 58.273 50.000 0.00 0.00 0.00 2.66
1924 4768 1.394917 CGCTTCCCAGATCGAACTTTG 59.605 52.381 0.00 0.00 0.00 2.77
1925 4769 2.699954 GCTTCCCAGATCGAACTTTGA 58.300 47.619 0.00 0.00 0.00 2.69
1926 4770 2.416893 GCTTCCCAGATCGAACTTTGAC 59.583 50.000 0.00 0.00 0.00 3.18
1927 4771 2.762535 TCCCAGATCGAACTTTGACC 57.237 50.000 0.00 0.00 0.00 4.02
1928 4772 1.974957 TCCCAGATCGAACTTTGACCA 59.025 47.619 0.00 0.00 0.00 4.02
1929 4773 2.571653 TCCCAGATCGAACTTTGACCAT 59.428 45.455 0.00 0.00 0.00 3.55
1930 4774 3.772572 TCCCAGATCGAACTTTGACCATA 59.227 43.478 0.00 0.00 0.00 2.74
1931 4775 4.224147 TCCCAGATCGAACTTTGACCATAA 59.776 41.667 0.00 0.00 0.00 1.90
1932 4776 4.941263 CCCAGATCGAACTTTGACCATAAA 59.059 41.667 0.00 0.00 0.00 1.40
1933 4777 5.590259 CCCAGATCGAACTTTGACCATAAAT 59.410 40.000 0.00 0.00 0.00 1.40
1934 4778 6.095440 CCCAGATCGAACTTTGACCATAAATT 59.905 38.462 0.00 0.00 0.00 1.82
1935 4779 7.362920 CCCAGATCGAACTTTGACCATAAATTT 60.363 37.037 0.00 0.00 0.00 1.82
1936 4780 8.673711 CCAGATCGAACTTTGACCATAAATTTA 58.326 33.333 0.00 0.00 0.00 1.40
1939 4783 8.889849 ATCGAACTTTGACCATAAATTTAACG 57.110 30.769 1.21 0.00 0.00 3.18
1940 4784 7.863666 TCGAACTTTGACCATAAATTTAACGT 58.136 30.769 1.21 1.28 0.00 3.99
1941 4785 7.799447 TCGAACTTTGACCATAAATTTAACGTG 59.201 33.333 1.21 0.00 0.00 4.49
1942 4786 7.408921 CGAACTTTGACCATAAATTTAACGTGC 60.409 37.037 1.21 0.00 0.00 5.34
1943 4787 5.854338 ACTTTGACCATAAATTTAACGTGCG 59.146 36.000 1.21 0.00 0.00 5.34
1944 4788 5.608676 TTGACCATAAATTTAACGTGCGA 57.391 34.783 1.21 0.00 0.00 5.10
1945 4789 5.211266 TGACCATAAATTTAACGTGCGAG 57.789 39.130 1.21 0.00 0.00 5.03
1946 4790 4.930405 TGACCATAAATTTAACGTGCGAGA 59.070 37.500 1.21 0.00 0.00 4.04
1947 4791 5.163933 TGACCATAAATTTAACGTGCGAGAC 60.164 40.000 1.21 0.00 0.00 3.36
1948 4792 4.093850 ACCATAAATTTAACGTGCGAGACC 59.906 41.667 1.21 0.00 0.00 3.85
1949 4793 2.867456 AAATTTAACGTGCGAGACCG 57.133 45.000 0.00 0.00 39.16 4.79
1950 4794 2.068837 AATTTAACGTGCGAGACCGA 57.931 45.000 0.00 0.00 38.22 4.69
1951 4795 2.288961 ATTTAACGTGCGAGACCGAT 57.711 45.000 0.00 0.00 38.22 4.18
1952 4796 2.068837 TTTAACGTGCGAGACCGATT 57.931 45.000 0.00 0.00 38.22 3.34
1953 4797 1.342555 TTAACGTGCGAGACCGATTG 58.657 50.000 0.00 0.00 38.22 2.67
1954 4798 1.074319 TAACGTGCGAGACCGATTGC 61.074 55.000 0.00 0.00 38.22 3.56
1955 4799 3.902063 CGTGCGAGACCGATTGCG 61.902 66.667 0.00 0.00 38.22 4.85
1966 4810 2.864589 GATTGCGGCGGACGAAAA 59.135 55.556 7.81 0.00 44.79 2.29
1967 4811 1.208103 GATTGCGGCGGACGAAAAA 59.792 52.632 7.81 0.00 44.79 1.94
2022 4866 9.722056 ACGAATTCACTGATATAATTTTTGCTC 57.278 29.630 6.22 0.00 0.00 4.26
2023 4867 9.173939 CGAATTCACTGATATAATTTTTGCTCC 57.826 33.333 6.22 0.00 0.00 4.70
2024 4868 9.468532 GAATTCACTGATATAATTTTTGCTCCC 57.531 33.333 0.00 0.00 0.00 4.30
2025 4869 7.953005 TTCACTGATATAATTTTTGCTCCCA 57.047 32.000 0.00 0.00 0.00 4.37
2026 4870 7.333528 TCACTGATATAATTTTTGCTCCCAC 57.666 36.000 0.00 0.00 0.00 4.61
2027 4871 6.321181 TCACTGATATAATTTTTGCTCCCACC 59.679 38.462 0.00 0.00 0.00 4.61
2028 4872 5.299279 ACTGATATAATTTTTGCTCCCACCG 59.701 40.000 0.00 0.00 0.00 4.94
2029 4873 2.959507 ATAATTTTTGCTCCCACCGC 57.040 45.000 0.00 0.00 0.00 5.68
2030 4874 1.621992 TAATTTTTGCTCCCACCGCA 58.378 45.000 0.00 0.00 35.22 5.69
2031 4875 0.755686 AATTTTTGCTCCCACCGCAA 59.244 45.000 0.00 0.00 44.83 4.85
2032 4876 0.975887 ATTTTTGCTCCCACCGCAAT 59.024 45.000 0.00 0.00 45.67 3.56
2033 4877 0.316841 TTTTTGCTCCCACCGCAATC 59.683 50.000 0.00 0.00 45.67 2.67
2034 4878 1.861542 TTTTGCTCCCACCGCAATCG 61.862 55.000 0.00 0.00 45.67 3.34
2049 4893 5.712217 CGCAATCGGTCTTGATAGTTAAA 57.288 39.130 0.00 0.00 0.00 1.52
2050 4894 6.287107 CGCAATCGGTCTTGATAGTTAAAT 57.713 37.500 0.00 0.00 0.00 1.40
2051 4895 6.715464 CGCAATCGGTCTTGATAGTTAAATT 58.285 36.000 0.00 0.00 0.00 1.82
2052 4896 7.186804 CGCAATCGGTCTTGATAGTTAAATTT 58.813 34.615 0.00 0.00 0.00 1.82
2053 4897 8.332464 CGCAATCGGTCTTGATAGTTAAATTTA 58.668 33.333 0.00 0.00 0.00 1.40
2054 4898 9.434559 GCAATCGGTCTTGATAGTTAAATTTAC 57.565 33.333 0.00 0.00 0.00 2.01
2055 4899 9.632969 CAATCGGTCTTGATAGTTAAATTTACG 57.367 33.333 0.00 0.00 0.00 3.18
2056 4900 7.760131 TCGGTCTTGATAGTTAAATTTACGG 57.240 36.000 0.00 0.00 0.00 4.02
2057 4901 7.322664 TCGGTCTTGATAGTTAAATTTACGGT 58.677 34.615 0.00 0.00 0.00 4.83
2058 4902 7.489113 TCGGTCTTGATAGTTAAATTTACGGTC 59.511 37.037 0.00 0.00 0.00 4.79
2059 4903 7.276218 CGGTCTTGATAGTTAAATTTACGGTCA 59.724 37.037 0.00 0.00 0.00 4.02
2060 4904 8.938906 GGTCTTGATAGTTAAATTTACGGTCAA 58.061 33.333 0.00 6.02 0.00 3.18
2061 4905 9.968743 GTCTTGATAGTTAAATTTACGGTCAAG 57.031 33.333 21.53 21.53 39.91 3.02
2062 4906 9.158233 TCTTGATAGTTAAATTTACGGTCAAGG 57.842 33.333 24.03 14.87 39.53 3.61
2063 4907 8.851541 TTGATAGTTAAATTTACGGTCAAGGT 57.148 30.769 0.00 0.00 0.00 3.50
2064 4908 8.851541 TGATAGTTAAATTTACGGTCAAGGTT 57.148 30.769 0.00 0.00 0.00 3.50
2065 4909 8.723311 TGATAGTTAAATTTACGGTCAAGGTTG 58.277 33.333 0.00 0.00 0.00 3.77
2066 4910 8.851541 ATAGTTAAATTTACGGTCAAGGTTGA 57.148 30.769 0.00 0.00 34.20 3.18
2067 4911 7.571080 AGTTAAATTTACGGTCAAGGTTGAA 57.429 32.000 0.00 0.00 39.21 2.69
2068 4912 7.645402 AGTTAAATTTACGGTCAAGGTTGAAG 58.355 34.615 0.00 0.00 39.21 3.02
2069 4913 4.499037 AATTTACGGTCAAGGTTGAAGC 57.501 40.909 0.00 0.00 39.21 3.86
2070 4914 2.623878 TTACGGTCAAGGTTGAAGCA 57.376 45.000 0.00 0.00 39.21 3.91
2071 4915 1.873698 TACGGTCAAGGTTGAAGCAC 58.126 50.000 0.00 0.00 39.21 4.40
2072 4916 1.157870 ACGGTCAAGGTTGAAGCACG 61.158 55.000 0.00 0.77 39.21 5.34
2073 4917 1.841663 CGGTCAAGGTTGAAGCACGG 61.842 60.000 0.00 0.00 39.21 4.94
2074 4918 1.515521 GGTCAAGGTTGAAGCACGGG 61.516 60.000 0.00 0.00 39.21 5.28
2075 4919 1.228124 TCAAGGTTGAAGCACGGGG 60.228 57.895 0.00 0.00 33.55 5.73
2076 4920 1.228124 CAAGGTTGAAGCACGGGGA 60.228 57.895 0.00 0.00 0.00 4.81
2077 4921 0.609131 CAAGGTTGAAGCACGGGGAT 60.609 55.000 0.00 0.00 0.00 3.85
2078 4922 0.988832 AAGGTTGAAGCACGGGGATA 59.011 50.000 0.00 0.00 0.00 2.59
2079 4923 0.541863 AGGTTGAAGCACGGGGATAG 59.458 55.000 0.00 0.00 0.00 2.08
2080 4924 0.539986 GGTTGAAGCACGGGGATAGA 59.460 55.000 0.00 0.00 0.00 1.98
2081 4925 1.473434 GGTTGAAGCACGGGGATAGAG 60.473 57.143 0.00 0.00 0.00 2.43
2082 4926 0.830648 TTGAAGCACGGGGATAGAGG 59.169 55.000 0.00 0.00 0.00 3.69
2083 4927 0.032515 TGAAGCACGGGGATAGAGGA 60.033 55.000 0.00 0.00 0.00 3.71
2084 4928 1.120530 GAAGCACGGGGATAGAGGAA 58.879 55.000 0.00 0.00 0.00 3.36
2085 4929 1.069358 GAAGCACGGGGATAGAGGAAG 59.931 57.143 0.00 0.00 0.00 3.46
2086 4930 1.069935 GCACGGGGATAGAGGAAGC 59.930 63.158 0.00 0.00 0.00 3.86
2087 4931 1.686325 GCACGGGGATAGAGGAAGCA 61.686 60.000 0.00 0.00 0.00 3.91
2088 4932 0.105039 CACGGGGATAGAGGAAGCAC 59.895 60.000 0.00 0.00 0.00 4.40
2089 4933 0.032017 ACGGGGATAGAGGAAGCACT 60.032 55.000 0.00 0.00 0.00 4.40
2090 4934 1.217183 ACGGGGATAGAGGAAGCACTA 59.783 52.381 0.00 0.00 0.00 2.74
2091 4935 1.614413 CGGGGATAGAGGAAGCACTAC 59.386 57.143 0.00 0.00 0.00 2.73
2092 4936 2.679082 GGGGATAGAGGAAGCACTACA 58.321 52.381 0.00 0.00 0.00 2.74
2093 4937 3.243724 GGGGATAGAGGAAGCACTACAT 58.756 50.000 0.00 0.00 0.00 2.29
2094 4938 3.648545 GGGGATAGAGGAAGCACTACATT 59.351 47.826 0.00 0.00 0.00 2.71
2095 4939 4.838986 GGGGATAGAGGAAGCACTACATTA 59.161 45.833 0.00 0.00 0.00 1.90
2096 4940 5.485708 GGGGATAGAGGAAGCACTACATTAT 59.514 44.000 0.00 0.00 0.00 1.28
2097 4941 6.402222 GGGATAGAGGAAGCACTACATTATG 58.598 44.000 0.00 0.00 0.00 1.90
2098 4942 6.402222 GGATAGAGGAAGCACTACATTATGG 58.598 44.000 0.00 0.00 0.00 2.74
2099 4943 6.211584 GGATAGAGGAAGCACTACATTATGGA 59.788 42.308 0.00 0.00 0.00 3.41
2100 4944 5.957771 AGAGGAAGCACTACATTATGGAA 57.042 39.130 0.00 0.00 0.00 3.53
2101 4945 6.506538 AGAGGAAGCACTACATTATGGAAT 57.493 37.500 0.00 0.00 0.00 3.01
2102 4946 6.294473 AGAGGAAGCACTACATTATGGAATG 58.706 40.000 0.00 0.00 46.77 2.67
2103 4947 5.380043 AGGAAGCACTACATTATGGAATGG 58.620 41.667 0.00 0.00 45.83 3.16
2104 4948 5.132648 AGGAAGCACTACATTATGGAATGGA 59.867 40.000 0.00 0.00 45.83 3.41
2110 4954 5.832539 CTACATTATGGAATGGAGGGAGT 57.167 43.478 2.44 0.00 46.58 3.85
2111 4955 6.935240 CTACATTATGGAATGGAGGGAGTA 57.065 41.667 2.44 0.00 46.58 2.59
2112 4956 7.316393 CTACATTATGGAATGGAGGGAGTAA 57.684 40.000 2.44 0.00 46.58 2.24
2113 4957 6.786843 ACATTATGGAATGGAGGGAGTAAT 57.213 37.500 0.00 0.00 45.83 1.89
2114 4958 7.166758 ACATTATGGAATGGAGGGAGTAATT 57.833 36.000 0.00 0.00 45.83 1.40
2115 4959 7.006509 ACATTATGGAATGGAGGGAGTAATTG 58.993 38.462 0.00 0.00 45.83 2.32
2116 4960 6.590656 TTATGGAATGGAGGGAGTAATTGT 57.409 37.500 0.00 0.00 0.00 2.71
2117 4961 4.946160 TGGAATGGAGGGAGTAATTGTT 57.054 40.909 0.00 0.00 0.00 2.83
2118 4962 5.269554 TGGAATGGAGGGAGTAATTGTTT 57.730 39.130 0.00 0.00 0.00 2.83
2119 4963 5.016173 TGGAATGGAGGGAGTAATTGTTTG 58.984 41.667 0.00 0.00 0.00 2.93
2120 4964 5.016831 GGAATGGAGGGAGTAATTGTTTGT 58.983 41.667 0.00 0.00 0.00 2.83
2121 4965 5.480422 GGAATGGAGGGAGTAATTGTTTGTT 59.520 40.000 0.00 0.00 0.00 2.83
2122 4966 6.014584 GGAATGGAGGGAGTAATTGTTTGTTT 60.015 38.462 0.00 0.00 0.00 2.83
2123 4967 5.782893 TGGAGGGAGTAATTGTTTGTTTG 57.217 39.130 0.00 0.00 0.00 2.93
2124 4968 5.450453 TGGAGGGAGTAATTGTTTGTTTGA 58.550 37.500 0.00 0.00 0.00 2.69
2125 4969 5.894393 TGGAGGGAGTAATTGTTTGTTTGAA 59.106 36.000 0.00 0.00 0.00 2.69
2126 4970 6.183360 TGGAGGGAGTAATTGTTTGTTTGAAC 60.183 38.462 0.00 0.00 0.00 3.18
2127 4971 6.183360 GGAGGGAGTAATTGTTTGTTTGAACA 60.183 38.462 0.00 0.00 37.73 3.18
2128 4972 6.805713 AGGGAGTAATTGTTTGTTTGAACAG 58.194 36.000 0.00 0.00 40.33 3.16
2129 4973 5.462068 GGGAGTAATTGTTTGTTTGAACAGC 59.538 40.000 0.00 0.00 40.33 4.40
2130 4974 6.273071 GGAGTAATTGTTTGTTTGAACAGCT 58.727 36.000 0.00 0.00 40.33 4.24
2131 4975 6.417930 GGAGTAATTGTTTGTTTGAACAGCTC 59.582 38.462 0.00 0.00 40.33 4.09
2132 4976 6.273071 AGTAATTGTTTGTTTGAACAGCTCC 58.727 36.000 0.00 0.00 40.33 4.70
2133 4977 4.734398 ATTGTTTGTTTGAACAGCTCCA 57.266 36.364 0.00 0.00 40.33 3.86
2134 4978 3.781079 TGTTTGTTTGAACAGCTCCAG 57.219 42.857 0.00 0.00 40.50 3.86
2135 4979 3.088532 TGTTTGTTTGAACAGCTCCAGT 58.911 40.909 0.00 0.00 40.50 4.00
2136 4980 3.119531 TGTTTGTTTGAACAGCTCCAGTG 60.120 43.478 0.00 0.00 40.50 3.66
2137 4981 1.024271 TGTTTGAACAGCTCCAGTGC 58.976 50.000 0.00 0.00 34.30 4.40
2138 4982 1.312815 GTTTGAACAGCTCCAGTGCT 58.687 50.000 0.00 0.00 45.18 4.40
2139 4983 2.158827 TGTTTGAACAGCTCCAGTGCTA 60.159 45.455 0.00 0.00 41.98 3.49
2140 4984 3.077359 GTTTGAACAGCTCCAGTGCTAT 58.923 45.455 0.00 0.00 41.98 2.97
2141 4985 2.680312 TGAACAGCTCCAGTGCTATC 57.320 50.000 0.00 0.00 41.98 2.08
2142 4986 2.182827 TGAACAGCTCCAGTGCTATCT 58.817 47.619 0.00 0.00 41.98 1.98
2143 4987 2.167281 TGAACAGCTCCAGTGCTATCTC 59.833 50.000 0.00 0.00 41.98 2.75
2144 4988 2.157640 ACAGCTCCAGTGCTATCTCT 57.842 50.000 0.00 0.00 41.98 3.10
2145 4989 2.465813 ACAGCTCCAGTGCTATCTCTT 58.534 47.619 0.00 0.00 41.98 2.85
2146 4990 2.836981 ACAGCTCCAGTGCTATCTCTTT 59.163 45.455 0.00 0.00 41.98 2.52
2147 4991 3.196463 CAGCTCCAGTGCTATCTCTTTG 58.804 50.000 0.00 0.00 41.98 2.77
2148 4992 1.939255 GCTCCAGTGCTATCTCTTTGC 59.061 52.381 0.00 0.00 0.00 3.68
2149 4993 2.559440 CTCCAGTGCTATCTCTTTGCC 58.441 52.381 0.00 0.00 0.00 4.52
2150 4994 1.908619 TCCAGTGCTATCTCTTTGCCA 59.091 47.619 0.00 0.00 0.00 4.92
2151 4995 2.507058 TCCAGTGCTATCTCTTTGCCAT 59.493 45.455 0.00 0.00 0.00 4.40
2152 4996 2.877168 CCAGTGCTATCTCTTTGCCATC 59.123 50.000 0.00 0.00 0.00 3.51
2153 4997 3.433314 CCAGTGCTATCTCTTTGCCATCT 60.433 47.826 0.00 0.00 0.00 2.90
2154 4998 4.197750 CAGTGCTATCTCTTTGCCATCTT 58.802 43.478 0.00 0.00 0.00 2.40
2155 4999 5.363101 CAGTGCTATCTCTTTGCCATCTTA 58.637 41.667 0.00 0.00 0.00 2.10
2156 5000 5.466058 CAGTGCTATCTCTTTGCCATCTTAG 59.534 44.000 0.00 0.00 0.00 2.18
2157 5001 5.365025 AGTGCTATCTCTTTGCCATCTTAGA 59.635 40.000 0.00 0.00 0.00 2.10
2158 5002 5.695816 GTGCTATCTCTTTGCCATCTTAGAG 59.304 44.000 0.00 0.00 36.35 2.43
2159 5003 4.690280 GCTATCTCTTTGCCATCTTAGAGC 59.310 45.833 0.00 0.00 35.28 4.09
2160 5004 4.767578 ATCTCTTTGCCATCTTAGAGCA 57.232 40.909 0.00 0.00 35.28 4.26
2161 5005 4.767578 TCTCTTTGCCATCTTAGAGCAT 57.232 40.909 0.00 0.00 36.20 3.79
2162 5006 4.701765 TCTCTTTGCCATCTTAGAGCATC 58.298 43.478 0.00 0.00 36.20 3.91
2173 5017 3.805267 GAGCATCTCCAGCCGTTG 58.195 61.111 0.00 0.00 0.00 4.10
2195 5039 3.083386 CCCAGGGGGCGTCTAAAA 58.917 61.111 0.00 0.00 35.35 1.52
2196 5040 1.077716 CCCAGGGGGCGTCTAAAAG 60.078 63.158 0.00 0.00 35.35 2.27
2197 5041 1.749258 CCAGGGGGCGTCTAAAAGC 60.749 63.158 0.00 0.00 0.00 3.51
2198 5042 2.106683 CAGGGGGCGTCTAAAAGCG 61.107 63.158 0.00 0.00 0.00 4.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.932619 TCTAGCAAGCATACTACTGGAAA 57.067 39.130 0.00 0.00 0.00 3.13
1 2 5.932619 TTCTAGCAAGCATACTACTGGAA 57.067 39.130 0.00 0.00 31.45 3.53
2 3 6.127054 ACAATTCTAGCAAGCATACTACTGGA 60.127 38.462 0.00 0.00 0.00 3.86
3 4 6.051717 ACAATTCTAGCAAGCATACTACTGG 58.948 40.000 0.00 0.00 0.00 4.00
4 5 7.493971 AGAACAATTCTAGCAAGCATACTACTG 59.506 37.037 0.00 0.00 38.49 2.74
5 6 7.560368 AGAACAATTCTAGCAAGCATACTACT 58.440 34.615 0.00 0.00 38.49 2.57
6 7 7.778470 AGAACAATTCTAGCAAGCATACTAC 57.222 36.000 0.00 0.00 38.49 2.73
7 8 9.314321 GTAAGAACAATTCTAGCAAGCATACTA 57.686 33.333 0.00 0.00 39.61 1.82
8 9 8.043710 AGTAAGAACAATTCTAGCAAGCATACT 58.956 33.333 0.00 0.00 39.61 2.12
9 10 8.202745 AGTAAGAACAATTCTAGCAAGCATAC 57.797 34.615 0.00 0.00 39.61 2.39
10 11 8.792830 AAGTAAGAACAATTCTAGCAAGCATA 57.207 30.769 0.00 0.00 39.61 3.14
11 12 7.693969 AAGTAAGAACAATTCTAGCAAGCAT 57.306 32.000 0.00 0.00 39.61 3.79
12 13 7.510549 AAAGTAAGAACAATTCTAGCAAGCA 57.489 32.000 0.00 0.00 39.61 3.91
50 51 9.547753 GAAGGATGCAAGAACAATATTCTAGTA 57.452 33.333 0.00 0.00 0.00 1.82
51 52 8.270744 AGAAGGATGCAAGAACAATATTCTAGT 58.729 33.333 0.00 0.00 0.00 2.57
52 53 8.674263 AGAAGGATGCAAGAACAATATTCTAG 57.326 34.615 0.00 0.00 0.00 2.43
54 55 7.951347 AAGAAGGATGCAAGAACAATATTCT 57.049 32.000 0.00 0.00 0.00 2.40
60 61 9.912634 CTTTAAATAAGAAGGATGCAAGAACAA 57.087 29.630 0.00 0.00 0.00 2.83
61 62 9.077885 ACTTTAAATAAGAAGGATGCAAGAACA 57.922 29.630 0.00 0.00 0.00 3.18
79 80 9.828039 CGGAGGGAGTACTAATTTACTTTAAAT 57.172 33.333 0.00 0.00 39.92 1.40
80 81 8.815912 ACGGAGGGAGTACTAATTTACTTTAAA 58.184 33.333 0.00 0.00 32.17 1.52
81 82 8.366359 ACGGAGGGAGTACTAATTTACTTTAA 57.634 34.615 0.00 0.00 32.17 1.52
82 83 7.961326 ACGGAGGGAGTACTAATTTACTTTA 57.039 36.000 0.00 0.00 32.17 1.85
83 84 6.864151 ACGGAGGGAGTACTAATTTACTTT 57.136 37.500 0.00 0.00 32.17 2.66
84 85 7.961326 TTACGGAGGGAGTACTAATTTACTT 57.039 36.000 0.00 0.00 32.17 2.24
85 86 7.961326 TTTACGGAGGGAGTACTAATTTACT 57.039 36.000 0.00 0.00 34.86 2.24
96 97 8.312564 GCTCTTATATTAATTTACGGAGGGAGT 58.687 37.037 0.00 0.00 0.00 3.85
97 98 8.311836 TGCTCTTATATTAATTTACGGAGGGAG 58.688 37.037 0.00 0.00 0.00 4.30
98 99 8.197592 TGCTCTTATATTAATTTACGGAGGGA 57.802 34.615 0.00 0.00 0.00 4.20
99 100 9.449719 AATGCTCTTATATTAATTTACGGAGGG 57.550 33.333 0.00 0.00 0.00 4.30
168 169 9.762381 CTCTAGGATAAATAATACTCCCTCTGT 57.238 37.037 0.00 0.00 28.85 3.41
169 170 9.196139 CCTCTAGGATAAATAATACTCCCTCTG 57.804 40.741 0.00 0.00 37.39 3.35
170 171 8.348354 CCCTCTAGGATAAATAATACTCCCTCT 58.652 40.741 0.00 0.00 38.24 3.69
171 172 7.070198 GCCCTCTAGGATAAATAATACTCCCTC 59.930 44.444 0.00 0.00 38.24 4.30
172 173 6.904093 GCCCTCTAGGATAAATAATACTCCCT 59.096 42.308 0.00 0.00 38.24 4.20
173 174 6.904093 AGCCCTCTAGGATAAATAATACTCCC 59.096 42.308 0.00 0.00 38.24 4.30
174 175 7.981475 AGCCCTCTAGGATAAATAATACTCC 57.019 40.000 0.00 0.00 38.24 3.85
243 252 7.164803 AGCATAAGTTTAGAGAGCTTGTCTTT 58.835 34.615 4.97 0.00 34.71 2.52
274 388 6.536224 GCAAAATACCAAGATCCTTTTCATGG 59.464 38.462 0.00 0.00 39.74 3.66
351 467 6.998074 TCAGGAGCAAAACTATTTCTTTCAGA 59.002 34.615 0.00 0.00 0.00 3.27
406 676 3.308530 GCGGGAATTTTGAGTTCAACTG 58.691 45.455 0.00 0.00 35.28 3.16
498 1409 0.250124 AGACAAACGTGGCGGATTGA 60.250 50.000 13.33 0.00 38.10 2.57
499 1410 0.165944 GAGACAAACGTGGCGGATTG 59.834 55.000 0.00 0.00 38.10 2.67
502 1413 0.462225 TTTGAGACAAACGTGGCGGA 60.462 50.000 0.00 0.00 38.10 5.54
503 1414 0.378962 TTTTGAGACAAACGTGGCGG 59.621 50.000 0.00 0.00 38.10 6.13
504 1415 2.181426 TTTTTGAGACAAACGTGGCG 57.819 45.000 0.00 0.00 38.10 5.69
521 1432 3.553917 CGTGGCGGATTGAAAAACTTTTT 59.446 39.130 0.00 0.00 0.00 1.94
522 1433 3.120041 CGTGGCGGATTGAAAAACTTTT 58.880 40.909 0.00 0.00 0.00 2.27
523 1434 2.100087 ACGTGGCGGATTGAAAAACTTT 59.900 40.909 0.00 0.00 0.00 2.66
524 1435 1.679153 ACGTGGCGGATTGAAAAACTT 59.321 42.857 0.00 0.00 0.00 2.66
525 1436 1.265905 GACGTGGCGGATTGAAAAACT 59.734 47.619 0.00 0.00 0.00 2.66
526 1437 1.002251 TGACGTGGCGGATTGAAAAAC 60.002 47.619 0.00 0.00 0.00 2.43
527 1438 1.265635 CTGACGTGGCGGATTGAAAAA 59.734 47.619 0.00 0.00 0.00 1.94
528 1439 0.871722 CTGACGTGGCGGATTGAAAA 59.128 50.000 0.00 0.00 0.00 2.29
529 1440 1.573829 GCTGACGTGGCGGATTGAAA 61.574 55.000 0.00 0.00 0.00 2.69
530 1441 2.032634 GCTGACGTGGCGGATTGAA 61.033 57.895 0.00 0.00 0.00 2.69
531 1442 2.434185 GCTGACGTGGCGGATTGA 60.434 61.111 0.00 0.00 0.00 2.57
665 1581 1.001068 GTTTATAGGAGGGGAGAGCGC 59.999 57.143 0.00 0.00 0.00 5.92
705 1624 1.654997 AGGTAGGAGTGGTGGGGAATA 59.345 52.381 0.00 0.00 0.00 1.75
811 1756 1.258445 GGTCTTCTCGGCCTTCTCCA 61.258 60.000 0.00 0.00 0.00 3.86
889 2017 4.357918 TCTTCTTTCCCTTCTTGTCAGG 57.642 45.455 0.00 0.00 0.00 3.86
890 2018 5.372373 ACTTCTTCTTTCCCTTCTTGTCAG 58.628 41.667 0.00 0.00 0.00 3.51
903 2034 4.061596 CGCTCTTCTTGGACTTCTTCTTT 58.938 43.478 0.00 0.00 0.00 2.52
1071 2202 2.969821 TGGTGGGCTTCTTGTTGTAT 57.030 45.000 0.00 0.00 0.00 2.29
1113 2244 4.816984 AGGACGAGGCGGACGGAT 62.817 66.667 0.00 0.00 34.93 4.18
1236 2367 4.886247 ACAGCTAACTAACTAGAGAGCG 57.114 45.455 0.00 0.00 38.59 5.03
1242 2373 7.094291 ACACAGTAGGAACAGCTAACTAACTAG 60.094 40.741 0.00 0.00 0.00 2.57
1265 2398 7.800380 CAGTTCATGAAACTTACAAGATGACAC 59.200 37.037 10.35 0.00 46.26 3.67
1398 2570 7.721399 ACAGAGAAAACAAGGATAAAGTCACAT 59.279 33.333 0.00 0.00 0.00 3.21
1498 4328 1.267806 CAGCTGCTGTACAAAACCTGG 59.732 52.381 21.21 0.00 0.00 4.45
1542 4374 2.821969 CAGCCAGGAGTGTTGCTAAAAT 59.178 45.455 0.00 0.00 31.69 1.82
1554 4386 1.137675 TCAATCATCGACAGCCAGGAG 59.862 52.381 0.00 0.00 0.00 3.69
1555 4387 1.194218 TCAATCATCGACAGCCAGGA 58.806 50.000 0.00 0.00 0.00 3.86
1556 4388 2.141517 GATCAATCATCGACAGCCAGG 58.858 52.381 0.00 0.00 0.00 4.45
1557 4389 3.109044 AGATCAATCATCGACAGCCAG 57.891 47.619 0.00 0.00 36.50 4.85
1558 4390 3.638627 AGTAGATCAATCATCGACAGCCA 59.361 43.478 0.00 0.00 39.10 4.75
1559 4391 3.986572 CAGTAGATCAATCATCGACAGCC 59.013 47.826 0.00 0.00 39.10 4.85
1560 4392 4.864633 TCAGTAGATCAATCATCGACAGC 58.135 43.478 0.00 0.00 39.10 4.40
1561 4393 6.075152 CGTTTCAGTAGATCAATCATCGACAG 60.075 42.308 0.00 0.00 39.10 3.51
1562 4394 5.743872 CGTTTCAGTAGATCAATCATCGACA 59.256 40.000 0.00 0.00 39.10 4.35
1563 4395 5.174035 CCGTTTCAGTAGATCAATCATCGAC 59.826 44.000 0.00 0.00 37.39 4.20
1564 4396 5.163550 ACCGTTTCAGTAGATCAATCATCGA 60.164 40.000 0.00 0.00 36.50 3.59
1565 4397 5.043903 ACCGTTTCAGTAGATCAATCATCG 58.956 41.667 0.00 0.00 36.50 3.84
1569 4401 4.391830 TGCAACCGTTTCAGTAGATCAATC 59.608 41.667 0.00 0.00 0.00 2.67
1582 4414 1.752694 ACAGGTGCTGCAACCGTTT 60.753 52.632 15.18 0.00 45.53 3.60
1698 4533 5.292101 GTCGTGAAGATGGAGAAAACATAGG 59.708 44.000 0.00 0.00 0.00 2.57
1711 4546 1.524355 GATCGCCATGTCGTGAAGATG 59.476 52.381 0.00 0.00 0.00 2.90
1717 4552 1.358877 TTCAAGATCGCCATGTCGTG 58.641 50.000 0.00 0.00 0.00 4.35
1727 4562 8.826546 ATAAAACAATCAACGATTCAAGATCG 57.173 30.769 6.85 6.85 46.02 3.69
1792 4631 4.094146 GCTGTTACAGAGGCAGAGAAATTC 59.906 45.833 17.40 0.00 32.44 2.17
1874 4718 6.488006 CACACTATAATTTGGAATGGAGGGAG 59.512 42.308 0.00 0.00 0.00 4.30
1875 4719 6.069088 ACACACTATAATTTGGAATGGAGGGA 60.069 38.462 0.00 0.00 0.00 4.20
1876 4720 6.129179 ACACACTATAATTTGGAATGGAGGG 58.871 40.000 0.00 0.00 0.00 4.30
1877 4721 6.263168 GGACACACTATAATTTGGAATGGAGG 59.737 42.308 0.00 0.00 0.00 4.30
1878 4722 6.017934 CGGACACACTATAATTTGGAATGGAG 60.018 42.308 0.00 0.00 0.00 3.86
1879 4723 5.820423 CGGACACACTATAATTTGGAATGGA 59.180 40.000 0.00 0.00 0.00 3.41
1880 4724 5.505654 GCGGACACACTATAATTTGGAATGG 60.506 44.000 0.00 0.00 0.00 3.16
1881 4725 5.510671 GCGGACACACTATAATTTGGAATG 58.489 41.667 0.00 0.00 0.00 2.67
1882 4726 4.272504 CGCGGACACACTATAATTTGGAAT 59.727 41.667 0.00 0.00 0.00 3.01
1883 4727 3.619483 CGCGGACACACTATAATTTGGAA 59.381 43.478 0.00 0.00 0.00 3.53
1884 4728 3.191669 CGCGGACACACTATAATTTGGA 58.808 45.455 0.00 0.00 0.00 3.53
1885 4729 2.286184 GCGCGGACACACTATAATTTGG 60.286 50.000 8.83 0.00 0.00 3.28
1886 4730 2.607635 AGCGCGGACACACTATAATTTG 59.392 45.455 8.83 0.00 0.00 2.32
1887 4731 2.901249 AGCGCGGACACACTATAATTT 58.099 42.857 8.83 0.00 0.00 1.82
1888 4732 2.596904 AGCGCGGACACACTATAATT 57.403 45.000 8.83 0.00 0.00 1.40
1889 4733 2.470821 GAAGCGCGGACACACTATAAT 58.529 47.619 8.83 0.00 0.00 1.28
1890 4734 1.470285 GGAAGCGCGGACACACTATAA 60.470 52.381 8.83 0.00 0.00 0.98
1891 4735 0.101759 GGAAGCGCGGACACACTATA 59.898 55.000 8.83 0.00 0.00 1.31
1892 4736 1.153628 GGAAGCGCGGACACACTAT 60.154 57.895 8.83 0.00 0.00 2.12
1893 4737 2.260434 GGAAGCGCGGACACACTA 59.740 61.111 8.83 0.00 0.00 2.74
1894 4738 4.681978 GGGAAGCGCGGACACACT 62.682 66.667 8.83 0.00 0.00 3.55
1895 4739 4.980805 TGGGAAGCGCGGACACAC 62.981 66.667 8.83 0.00 0.00 3.82
1896 4740 4.680237 CTGGGAAGCGCGGACACA 62.680 66.667 8.83 3.86 0.00 3.72
1897 4741 3.665675 ATCTGGGAAGCGCGGACAC 62.666 63.158 8.83 0.00 34.63 3.67
1898 4742 3.371097 GATCTGGGAAGCGCGGACA 62.371 63.158 8.83 0.00 34.63 4.02
1899 4743 2.586357 GATCTGGGAAGCGCGGAC 60.586 66.667 8.83 0.00 34.63 4.79
1900 4744 4.207281 CGATCTGGGAAGCGCGGA 62.207 66.667 8.83 0.00 36.20 5.54
1901 4745 3.716539 TTCGATCTGGGAAGCGCGG 62.717 63.158 8.83 0.00 0.00 6.46
1902 4746 2.202743 TTCGATCTGGGAAGCGCG 60.203 61.111 0.00 0.00 0.00 6.86
1903 4747 0.741221 AAGTTCGATCTGGGAAGCGC 60.741 55.000 0.00 0.00 0.00 5.92
1904 4748 1.394917 CAAAGTTCGATCTGGGAAGCG 59.605 52.381 0.00 0.00 0.00 4.68
1905 4749 2.416893 GTCAAAGTTCGATCTGGGAAGC 59.583 50.000 0.00 0.00 0.00 3.86
1906 4750 3.003480 GGTCAAAGTTCGATCTGGGAAG 58.997 50.000 0.00 0.00 0.00 3.46
1907 4751 2.370519 TGGTCAAAGTTCGATCTGGGAA 59.629 45.455 0.00 0.00 0.00 3.97
1908 4752 1.974957 TGGTCAAAGTTCGATCTGGGA 59.025 47.619 0.00 0.00 0.00 4.37
1909 4753 2.472695 TGGTCAAAGTTCGATCTGGG 57.527 50.000 0.00 0.00 0.00 4.45
1910 4754 6.683974 ATTTATGGTCAAAGTTCGATCTGG 57.316 37.500 0.00 0.00 0.00 3.86
1913 4757 8.995906 CGTTAAATTTATGGTCAAAGTTCGATC 58.004 33.333 0.00 0.00 29.44 3.69
1914 4758 8.508875 ACGTTAAATTTATGGTCAAAGTTCGAT 58.491 29.630 0.00 0.00 29.44 3.59
1915 4759 7.799447 CACGTTAAATTTATGGTCAAAGTTCGA 59.201 33.333 0.00 0.00 29.44 3.71
1916 4760 7.408921 GCACGTTAAATTTATGGTCAAAGTTCG 60.409 37.037 0.00 0.00 29.44 3.95
1917 4761 7.408921 CGCACGTTAAATTTATGGTCAAAGTTC 60.409 37.037 0.00 0.00 29.44 3.01
1918 4762 6.361214 CGCACGTTAAATTTATGGTCAAAGTT 59.639 34.615 0.00 0.00 31.36 2.66
1919 4763 5.854338 CGCACGTTAAATTTATGGTCAAAGT 59.146 36.000 0.00 0.00 0.00 2.66
1920 4764 6.081049 TCGCACGTTAAATTTATGGTCAAAG 58.919 36.000 0.00 0.00 0.00 2.77
1921 4765 5.998553 TCGCACGTTAAATTTATGGTCAAA 58.001 33.333 0.00 0.00 0.00 2.69
1922 4766 5.408909 TCTCGCACGTTAAATTTATGGTCAA 59.591 36.000 0.00 0.00 0.00 3.18
1923 4767 4.930405 TCTCGCACGTTAAATTTATGGTCA 59.070 37.500 0.00 0.00 0.00 4.02
1924 4768 5.253335 GTCTCGCACGTTAAATTTATGGTC 58.747 41.667 0.00 0.00 0.00 4.02
1925 4769 4.093850 GGTCTCGCACGTTAAATTTATGGT 59.906 41.667 0.00 0.00 0.00 3.55
1926 4770 4.584394 GGTCTCGCACGTTAAATTTATGG 58.416 43.478 0.00 0.00 0.00 2.74
1927 4771 4.031991 TCGGTCTCGCACGTTAAATTTATG 59.968 41.667 0.00 0.00 36.13 1.90
1928 4772 4.175516 TCGGTCTCGCACGTTAAATTTAT 58.824 39.130 0.00 0.00 36.13 1.40
1929 4773 3.573598 TCGGTCTCGCACGTTAAATTTA 58.426 40.909 0.00 0.00 36.13 1.40
1930 4774 2.406130 TCGGTCTCGCACGTTAAATTT 58.594 42.857 0.00 0.00 36.13 1.82
1931 4775 2.068837 TCGGTCTCGCACGTTAAATT 57.931 45.000 0.00 0.00 36.13 1.82
1932 4776 2.288961 ATCGGTCTCGCACGTTAAAT 57.711 45.000 0.00 0.00 36.13 1.40
1933 4777 1.722464 CAATCGGTCTCGCACGTTAAA 59.278 47.619 0.00 0.00 36.13 1.52
1934 4778 1.342555 CAATCGGTCTCGCACGTTAA 58.657 50.000 0.00 0.00 36.13 2.01
1935 4779 1.074319 GCAATCGGTCTCGCACGTTA 61.074 55.000 0.00 0.00 36.13 3.18
1936 4780 2.380410 GCAATCGGTCTCGCACGTT 61.380 57.895 0.00 0.00 36.13 3.99
1937 4781 2.809601 GCAATCGGTCTCGCACGT 60.810 61.111 0.00 0.00 36.13 4.49
1938 4782 3.902063 CGCAATCGGTCTCGCACG 61.902 66.667 0.00 0.00 36.13 5.34
1948 4792 2.501607 TTTTTCGTCCGCCGCAATCG 62.502 55.000 0.00 0.00 36.19 3.34
1949 4793 1.208103 TTTTTCGTCCGCCGCAATC 59.792 52.632 0.00 0.00 36.19 2.67
1950 4794 3.346101 TTTTTCGTCCGCCGCAAT 58.654 50.000 0.00 0.00 36.19 3.56
1996 4840 9.722056 GAGCAAAAATTATATCAGTGAATTCGT 57.278 29.630 0.00 0.00 0.00 3.85
1997 4841 9.173939 GGAGCAAAAATTATATCAGTGAATTCG 57.826 33.333 0.00 0.00 0.00 3.34
1998 4842 9.468532 GGGAGCAAAAATTATATCAGTGAATTC 57.531 33.333 0.00 0.00 0.00 2.17
1999 4843 8.980596 TGGGAGCAAAAATTATATCAGTGAATT 58.019 29.630 0.00 0.00 0.00 2.17
2000 4844 8.416329 GTGGGAGCAAAAATTATATCAGTGAAT 58.584 33.333 0.00 0.00 0.00 2.57
2001 4845 7.147915 GGTGGGAGCAAAAATTATATCAGTGAA 60.148 37.037 0.00 0.00 0.00 3.18
2002 4846 6.321181 GGTGGGAGCAAAAATTATATCAGTGA 59.679 38.462 0.00 0.00 0.00 3.41
2003 4847 6.507023 GGTGGGAGCAAAAATTATATCAGTG 58.493 40.000 0.00 0.00 0.00 3.66
2004 4848 5.299279 CGGTGGGAGCAAAAATTATATCAGT 59.701 40.000 0.00 0.00 0.00 3.41
2005 4849 5.762045 CGGTGGGAGCAAAAATTATATCAG 58.238 41.667 0.00 0.00 0.00 2.90
2006 4850 4.037446 GCGGTGGGAGCAAAAATTATATCA 59.963 41.667 0.00 0.00 34.19 2.15
2007 4851 4.037446 TGCGGTGGGAGCAAAAATTATATC 59.963 41.667 0.00 0.00 42.18 1.63
2008 4852 3.957497 TGCGGTGGGAGCAAAAATTATAT 59.043 39.130 0.00 0.00 42.18 0.86
2009 4853 3.357203 TGCGGTGGGAGCAAAAATTATA 58.643 40.909 0.00 0.00 42.18 0.98
2010 4854 2.175202 TGCGGTGGGAGCAAAAATTAT 58.825 42.857 0.00 0.00 42.18 1.28
2011 4855 1.621992 TGCGGTGGGAGCAAAAATTA 58.378 45.000 0.00 0.00 42.18 1.40
2012 4856 2.435418 TGCGGTGGGAGCAAAAATT 58.565 47.368 0.00 0.00 42.18 1.82
2013 4857 4.189539 TGCGGTGGGAGCAAAAAT 57.810 50.000 0.00 0.00 42.18 1.82
2027 4871 5.712217 TTTAACTATCAAGACCGATTGCG 57.288 39.130 0.00 0.00 37.24 4.85
2028 4872 9.434559 GTAAATTTAACTATCAAGACCGATTGC 57.565 33.333 0.00 0.00 0.00 3.56
2029 4873 9.632969 CGTAAATTTAACTATCAAGACCGATTG 57.367 33.333 0.00 0.00 0.00 2.67
2030 4874 8.823818 CCGTAAATTTAACTATCAAGACCGATT 58.176 33.333 0.00 0.00 0.00 3.34
2031 4875 7.983484 ACCGTAAATTTAACTATCAAGACCGAT 59.017 33.333 0.00 0.00 0.00 4.18
2032 4876 7.322664 ACCGTAAATTTAACTATCAAGACCGA 58.677 34.615 0.00 0.00 0.00 4.69
2033 4877 7.276218 TGACCGTAAATTTAACTATCAAGACCG 59.724 37.037 0.00 0.00 0.00 4.79
2034 4878 8.483307 TGACCGTAAATTTAACTATCAAGACC 57.517 34.615 0.00 0.00 0.00 3.85
2035 4879 9.968743 CTTGACCGTAAATTTAACTATCAAGAC 57.031 33.333 22.98 4.48 37.99 3.01
2036 4880 9.158233 CCTTGACCGTAAATTTAACTATCAAGA 57.842 33.333 25.87 8.17 37.99 3.02
2037 4881 8.943002 ACCTTGACCGTAAATTTAACTATCAAG 58.057 33.333 21.76 21.76 36.83 3.02
2038 4882 8.851541 ACCTTGACCGTAAATTTAACTATCAA 57.148 30.769 0.00 7.22 0.00 2.57
2039 4883 8.723311 CAACCTTGACCGTAAATTTAACTATCA 58.277 33.333 0.00 0.00 0.00 2.15
2040 4884 8.938906 TCAACCTTGACCGTAAATTTAACTATC 58.061 33.333 0.00 0.00 31.01 2.08
2041 4885 8.851541 TCAACCTTGACCGTAAATTTAACTAT 57.148 30.769 0.00 0.00 31.01 2.12
2042 4886 8.674263 TTCAACCTTGACCGTAAATTTAACTA 57.326 30.769 0.00 0.00 36.83 2.24
2043 4887 7.571080 TTCAACCTTGACCGTAAATTTAACT 57.429 32.000 0.00 0.00 36.83 2.24
2044 4888 6.361481 GCTTCAACCTTGACCGTAAATTTAAC 59.639 38.462 0.00 0.00 36.83 2.01
2045 4889 6.039493 TGCTTCAACCTTGACCGTAAATTTAA 59.961 34.615 0.00 0.00 36.83 1.52
2046 4890 5.531659 TGCTTCAACCTTGACCGTAAATTTA 59.468 36.000 0.00 0.00 36.83 1.40
2047 4891 4.339814 TGCTTCAACCTTGACCGTAAATTT 59.660 37.500 0.00 0.00 36.83 1.82
2048 4892 3.886505 TGCTTCAACCTTGACCGTAAATT 59.113 39.130 0.00 0.00 36.83 1.82
2049 4893 3.252458 GTGCTTCAACCTTGACCGTAAAT 59.748 43.478 0.00 0.00 36.83 1.40
2050 4894 2.614983 GTGCTTCAACCTTGACCGTAAA 59.385 45.455 0.00 0.00 36.83 2.01
2051 4895 2.215196 GTGCTTCAACCTTGACCGTAA 58.785 47.619 0.00 0.00 36.83 3.18
2052 4896 1.870580 CGTGCTTCAACCTTGACCGTA 60.871 52.381 0.00 0.00 36.83 4.02
2053 4897 1.157870 CGTGCTTCAACCTTGACCGT 61.158 55.000 0.00 0.00 36.83 4.83
2054 4898 1.569493 CGTGCTTCAACCTTGACCG 59.431 57.895 0.00 0.00 36.83 4.79
2055 4899 1.515521 CCCGTGCTTCAACCTTGACC 61.516 60.000 0.00 0.00 36.83 4.02
2056 4900 1.515521 CCCCGTGCTTCAACCTTGAC 61.516 60.000 0.00 0.00 36.83 3.18
2057 4901 1.228124 CCCCGTGCTTCAACCTTGA 60.228 57.895 0.00 0.00 34.92 3.02
2058 4902 0.609131 ATCCCCGTGCTTCAACCTTG 60.609 55.000 0.00 0.00 0.00 3.61
2059 4903 0.988832 TATCCCCGTGCTTCAACCTT 59.011 50.000 0.00 0.00 0.00 3.50
2060 4904 0.541863 CTATCCCCGTGCTTCAACCT 59.458 55.000 0.00 0.00 0.00 3.50
2061 4905 0.539986 TCTATCCCCGTGCTTCAACC 59.460 55.000 0.00 0.00 0.00 3.77
2062 4906 1.473434 CCTCTATCCCCGTGCTTCAAC 60.473 57.143 0.00 0.00 0.00 3.18
2063 4907 0.830648 CCTCTATCCCCGTGCTTCAA 59.169 55.000 0.00 0.00 0.00 2.69
2064 4908 0.032515 TCCTCTATCCCCGTGCTTCA 60.033 55.000 0.00 0.00 0.00 3.02
2065 4909 1.069358 CTTCCTCTATCCCCGTGCTTC 59.931 57.143 0.00 0.00 0.00 3.86
2066 4910 1.123928 CTTCCTCTATCCCCGTGCTT 58.876 55.000 0.00 0.00 0.00 3.91
2067 4911 1.403687 GCTTCCTCTATCCCCGTGCT 61.404 60.000 0.00 0.00 0.00 4.40
2068 4912 1.069935 GCTTCCTCTATCCCCGTGC 59.930 63.158 0.00 0.00 0.00 5.34
2069 4913 0.105039 GTGCTTCCTCTATCCCCGTG 59.895 60.000 0.00 0.00 0.00 4.94
2070 4914 0.032017 AGTGCTTCCTCTATCCCCGT 60.032 55.000 0.00 0.00 0.00 5.28
2071 4915 1.614413 GTAGTGCTTCCTCTATCCCCG 59.386 57.143 0.00 0.00 0.00 5.73
2072 4916 2.679082 TGTAGTGCTTCCTCTATCCCC 58.321 52.381 0.00 0.00 0.00 4.81
2073 4917 4.965200 AATGTAGTGCTTCCTCTATCCC 57.035 45.455 0.00 0.00 0.00 3.85
2074 4918 6.211584 TCCATAATGTAGTGCTTCCTCTATCC 59.788 42.308 0.00 0.00 0.00 2.59
2075 4919 7.233389 TCCATAATGTAGTGCTTCCTCTATC 57.767 40.000 0.00 0.00 0.00 2.08
2076 4920 7.618019 TTCCATAATGTAGTGCTTCCTCTAT 57.382 36.000 0.00 0.00 0.00 1.98
2077 4921 7.445121 CATTCCATAATGTAGTGCTTCCTCTA 58.555 38.462 0.00 0.00 38.15 2.43
2078 4922 5.957771 TTCCATAATGTAGTGCTTCCTCT 57.042 39.130 0.00 0.00 0.00 3.69
2079 4923 5.471456 CCATTCCATAATGTAGTGCTTCCTC 59.529 44.000 0.00 0.00 40.84 3.71
2080 4924 5.132648 TCCATTCCATAATGTAGTGCTTCCT 59.867 40.000 0.00 0.00 40.84 3.36
2081 4925 5.376625 TCCATTCCATAATGTAGTGCTTCC 58.623 41.667 0.00 0.00 40.84 3.46
2082 4926 5.471456 CCTCCATTCCATAATGTAGTGCTTC 59.529 44.000 0.00 0.00 40.84 3.86
2083 4927 5.380043 CCTCCATTCCATAATGTAGTGCTT 58.620 41.667 0.00 0.00 40.84 3.91
2084 4928 4.202503 CCCTCCATTCCATAATGTAGTGCT 60.203 45.833 0.00 0.00 40.84 4.40
2085 4929 4.074970 CCCTCCATTCCATAATGTAGTGC 58.925 47.826 0.00 0.00 40.84 4.40
2086 4930 5.072329 ACTCCCTCCATTCCATAATGTAGTG 59.928 44.000 0.00 0.00 40.84 2.74
2087 4931 5.227593 ACTCCCTCCATTCCATAATGTAGT 58.772 41.667 0.00 0.00 40.84 2.73
2088 4932 5.832539 ACTCCCTCCATTCCATAATGTAG 57.167 43.478 0.00 0.00 40.84 2.74
2089 4933 7.888514 ATTACTCCCTCCATTCCATAATGTA 57.111 36.000 0.00 0.00 40.84 2.29
2090 4934 6.786843 ATTACTCCCTCCATTCCATAATGT 57.213 37.500 0.00 0.00 40.84 2.71
2091 4935 7.006509 ACAATTACTCCCTCCATTCCATAATG 58.993 38.462 0.00 0.00 41.90 1.90
2092 4936 7.166758 ACAATTACTCCCTCCATTCCATAAT 57.833 36.000 0.00 0.00 0.00 1.28
2093 4937 6.590656 ACAATTACTCCCTCCATTCCATAA 57.409 37.500 0.00 0.00 0.00 1.90
2094 4938 6.590656 AACAATTACTCCCTCCATTCCATA 57.409 37.500 0.00 0.00 0.00 2.74
2095 4939 5.472301 AACAATTACTCCCTCCATTCCAT 57.528 39.130 0.00 0.00 0.00 3.41
2096 4940 4.946160 AACAATTACTCCCTCCATTCCA 57.054 40.909 0.00 0.00 0.00 3.53
2097 4941 5.016831 ACAAACAATTACTCCCTCCATTCC 58.983 41.667 0.00 0.00 0.00 3.01
2098 4942 6.590234 AACAAACAATTACTCCCTCCATTC 57.410 37.500 0.00 0.00 0.00 2.67
2099 4943 6.553100 TCAAACAAACAATTACTCCCTCCATT 59.447 34.615 0.00 0.00 0.00 3.16
2100 4944 6.074648 TCAAACAAACAATTACTCCCTCCAT 58.925 36.000 0.00 0.00 0.00 3.41
2101 4945 5.450453 TCAAACAAACAATTACTCCCTCCA 58.550 37.500 0.00 0.00 0.00 3.86
2102 4946 6.183360 TGTTCAAACAAACAATTACTCCCTCC 60.183 38.462 0.00 0.00 36.25 4.30
2103 4947 6.801575 TGTTCAAACAAACAATTACTCCCTC 58.198 36.000 0.00 0.00 36.25 4.30
2104 4948 6.682861 GCTGTTCAAACAAACAATTACTCCCT 60.683 38.462 0.00 0.00 38.60 4.20
2105 4949 5.462068 GCTGTTCAAACAAACAATTACTCCC 59.538 40.000 0.00 0.00 38.60 4.30
2106 4950 6.273071 AGCTGTTCAAACAAACAATTACTCC 58.727 36.000 0.00 0.00 38.60 3.85
2107 4951 6.417930 GGAGCTGTTCAAACAAACAATTACTC 59.582 38.462 0.00 0.00 38.60 2.59
2108 4952 6.127479 TGGAGCTGTTCAAACAAACAATTACT 60.127 34.615 0.00 0.00 38.60 2.24
2109 4953 6.039616 TGGAGCTGTTCAAACAAACAATTAC 58.960 36.000 0.00 0.00 38.60 1.89
2110 4954 6.127479 ACTGGAGCTGTTCAAACAAACAATTA 60.127 34.615 0.00 0.00 38.60 1.40
2111 4955 5.083533 TGGAGCTGTTCAAACAAACAATT 57.916 34.783 0.00 0.00 38.60 2.32
2112 4956 4.160252 ACTGGAGCTGTTCAAACAAACAAT 59.840 37.500 0.00 0.00 38.60 2.71
2113 4957 3.509575 ACTGGAGCTGTTCAAACAAACAA 59.490 39.130 0.00 0.00 38.60 2.83
2114 4958 3.088532 ACTGGAGCTGTTCAAACAAACA 58.911 40.909 0.00 0.00 38.66 2.83
2115 4959 3.438360 CACTGGAGCTGTTCAAACAAAC 58.562 45.455 0.00 0.00 38.66 2.93
2116 4960 2.159254 GCACTGGAGCTGTTCAAACAAA 60.159 45.455 0.00 0.00 38.66 2.83
2117 4961 1.405105 GCACTGGAGCTGTTCAAACAA 59.595 47.619 0.00 0.00 38.66 2.83
2118 4962 1.024271 GCACTGGAGCTGTTCAAACA 58.976 50.000 0.00 0.00 37.37 2.83
2119 4963 1.312815 AGCACTGGAGCTGTTCAAAC 58.687 50.000 0.00 0.00 44.66 2.93
2120 4964 2.928801 TAGCACTGGAGCTGTTCAAA 57.071 45.000 0.00 0.00 46.11 2.69
2121 4965 2.568956 AGATAGCACTGGAGCTGTTCAA 59.431 45.455 0.00 0.00 46.11 2.69
2122 4966 2.167281 GAGATAGCACTGGAGCTGTTCA 59.833 50.000 0.00 0.00 46.11 3.18
2123 4967 2.430332 AGAGATAGCACTGGAGCTGTTC 59.570 50.000 0.00 4.71 46.11 3.18
2124 4968 2.465813 AGAGATAGCACTGGAGCTGTT 58.534 47.619 0.00 0.00 46.11 3.16
2125 4969 2.157640 AGAGATAGCACTGGAGCTGT 57.842 50.000 0.00 0.77 46.11 4.40
2126 4970 3.196463 CAAAGAGATAGCACTGGAGCTG 58.804 50.000 0.00 0.00 46.11 4.24
2128 4972 1.939255 GCAAAGAGATAGCACTGGAGC 59.061 52.381 0.00 0.00 0.00 4.70
2129 4973 2.093288 TGGCAAAGAGATAGCACTGGAG 60.093 50.000 0.00 0.00 0.00 3.86
2130 4974 1.908619 TGGCAAAGAGATAGCACTGGA 59.091 47.619 0.00 0.00 0.00 3.86
2131 4975 2.408271 TGGCAAAGAGATAGCACTGG 57.592 50.000 0.00 0.00 0.00 4.00
2132 4976 3.806380 AGATGGCAAAGAGATAGCACTG 58.194 45.455 0.00 0.00 0.00 3.66
2133 4977 4.500499 AAGATGGCAAAGAGATAGCACT 57.500 40.909 0.00 0.00 0.00 4.40
2134 4978 5.605534 TCTAAGATGGCAAAGAGATAGCAC 58.394 41.667 0.00 0.00 0.00 4.40
2135 4979 5.741383 GCTCTAAGATGGCAAAGAGATAGCA 60.741 44.000 18.14 0.00 38.16 3.49
2136 4980 4.690280 GCTCTAAGATGGCAAAGAGATAGC 59.310 45.833 18.14 8.01 38.16 2.97
2137 4981 5.851720 TGCTCTAAGATGGCAAAGAGATAG 58.148 41.667 18.14 5.62 38.16 2.08
2138 4982 5.876651 TGCTCTAAGATGGCAAAGAGATA 57.123 39.130 18.14 7.70 38.16 1.98
2139 4983 4.767578 TGCTCTAAGATGGCAAAGAGAT 57.232 40.909 18.14 0.00 38.16 2.75
2140 4984 4.408270 AGATGCTCTAAGATGGCAAAGAGA 59.592 41.667 18.14 7.39 38.16 3.10
2141 4985 4.706035 AGATGCTCTAAGATGGCAAAGAG 58.294 43.478 12.51 12.51 39.46 2.85
2142 4986 4.444022 GGAGATGCTCTAAGATGGCAAAGA 60.444 45.833 0.00 0.00 39.46 2.52
2143 4987 3.814283 GGAGATGCTCTAAGATGGCAAAG 59.186 47.826 0.00 0.00 39.46 2.77
2144 4988 3.200605 TGGAGATGCTCTAAGATGGCAAA 59.799 43.478 0.00 0.00 39.46 3.68
2145 4989 2.773661 TGGAGATGCTCTAAGATGGCAA 59.226 45.455 0.00 0.00 39.46 4.52
2146 4990 2.367894 CTGGAGATGCTCTAAGATGGCA 59.632 50.000 0.00 0.00 40.32 4.92
2147 4991 2.871236 GCTGGAGATGCTCTAAGATGGC 60.871 54.545 0.00 0.00 0.00 4.40
2148 4992 2.289569 GGCTGGAGATGCTCTAAGATGG 60.290 54.545 0.00 0.00 0.00 3.51
2149 4993 2.609984 CGGCTGGAGATGCTCTAAGATG 60.610 54.545 0.00 0.00 0.00 2.90
2150 4994 1.617850 CGGCTGGAGATGCTCTAAGAT 59.382 52.381 0.00 0.00 0.00 2.40
2151 4995 1.035923 CGGCTGGAGATGCTCTAAGA 58.964 55.000 0.00 0.00 0.00 2.10
2152 4996 0.749649 ACGGCTGGAGATGCTCTAAG 59.250 55.000 0.00 0.00 0.00 2.18
2153 4997 1.134699 CAACGGCTGGAGATGCTCTAA 60.135 52.381 0.00 0.00 0.00 2.10
2154 4998 0.461548 CAACGGCTGGAGATGCTCTA 59.538 55.000 0.00 0.00 0.00 2.43
2155 4999 1.220206 CAACGGCTGGAGATGCTCT 59.780 57.895 0.00 0.00 0.00 4.09
2156 5000 3.805267 CAACGGCTGGAGATGCTC 58.195 61.111 0.00 0.00 0.00 4.26
2179 5023 1.749258 GCTTTTAGACGCCCCCTGG 60.749 63.158 0.00 0.00 0.00 4.45
2180 5024 2.106683 CGCTTTTAGACGCCCCCTG 61.107 63.158 0.00 0.00 0.00 4.45
2181 5025 2.267961 CGCTTTTAGACGCCCCCT 59.732 61.111 0.00 0.00 0.00 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.