Multiple sequence alignment - TraesCS7A01G498200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G498200 chr7A 100.000 9646 0 0 1 9646 688694088 688684443 0.000000e+00 17813.0
1 TraesCS7A01G498200 chr7A 80.942 892 102 28 7971 8847 688457232 688456394 2.270000e-180 643.0
2 TraesCS7A01G498200 chr7A 81.096 529 60 19 7971 8488 688663185 688662686 4.230000e-103 387.0
3 TraesCS7A01G498200 chr7A 80.583 515 65 22 7484 7974 688457817 688457314 1.980000e-96 364.0
4 TraesCS7A01G498200 chr7A 83.288 371 48 10 8119 8486 688627292 688626933 7.220000e-86 329.0
5 TraesCS7A01G498200 chr7A 85.809 303 26 10 9316 9611 688625965 688625673 1.220000e-78 305.0
6 TraesCS7A01G498200 chr7A 83.270 263 25 9 6597 6857 688459549 688459304 3.510000e-54 224.0
7 TraesCS7A01G498200 chr7A 85.520 221 20 8 9316 9532 688638930 688638718 4.530000e-53 220.0
8 TraesCS7A01G498200 chr7A 88.095 168 12 6 8563 8725 688662656 688662492 9.890000e-45 193.0
9 TraesCS7A01G498200 chr7A 74.629 607 68 40 8889 9453 688662071 688661509 1.280000e-43 189.0
10 TraesCS7A01G498200 chr7A 85.430 151 18 3 7972 8122 688641090 688640944 4.670000e-33 154.0
11 TraesCS7A01G498200 chr7A 84.810 79 10 2 8802 8879 688662483 688662406 2.890000e-10 78.7
12 TraesCS7A01G498200 chr7D 96.462 5285 157 15 3517 8792 595728496 595723233 0.000000e+00 8696.0
13 TraesCS7A01G498200 chr7D 95.064 2512 91 20 1 2504 595731731 595729245 0.000000e+00 3921.0
14 TraesCS7A01G498200 chr7D 97.486 716 16 1 2805 3518 595729246 595728531 0.000000e+00 1221.0
15 TraesCS7A01G498200 chr7D 85.369 786 50 22 8900 9646 595722748 595721989 0.000000e+00 754.0
16 TraesCS7A01G498200 chr7D 80.624 898 100 27 7973 8847 595578345 595577499 2.290000e-175 627.0
17 TraesCS7A01G498200 chr7D 82.749 371 51 6 8119 8486 595613555 595613195 1.560000e-82 318.0
18 TraesCS7A01G498200 chr7D 86.184 304 21 12 9316 9610 595612252 595611961 9.410000e-80 309.0
19 TraesCS7A01G498200 chr7D 81.935 310 39 6 6597 6903 595581364 595581069 7.480000e-61 246.0
20 TraesCS7A01G498200 chr7D 82.818 291 21 10 8563 8848 595665559 595665293 5.820000e-57 233.0
21 TraesCS7A01G498200 chr7D 74.633 682 82 52 8900 9543 595664911 595664283 5.870000e-52 217.0
22 TraesCS7A01G498200 chr7D 81.655 278 32 3 7718 7976 595666651 595666374 7.590000e-51 213.0
23 TraesCS7A01G498200 chr7D 76.728 434 59 19 7084 7488 595606037 595605617 4.570000e-48 204.0
24 TraesCS7A01G498200 chr7D 92.647 136 6 2 8754 8889 595723234 595723103 9.890000e-45 193.0
25 TraesCS7A01G498200 chr7D 83.333 192 10 10 8889 9076 595612601 595612428 3.610000e-34 158.0
26 TraesCS7A01G498200 chr7D 94.898 98 4 1 7393 7490 595531873 595531777 1.680000e-32 152.0
27 TraesCS7A01G498200 chr7D 91.045 67 6 0 6953 7019 595580493 595580427 3.710000e-14 91.6
28 TraesCS7A01G498200 chr7B 96.308 4659 121 19 3517 8163 673309504 673304885 0.000000e+00 7603.0
29 TraesCS7A01G498200 chr7B 93.034 2541 117 24 1 2504 673312654 673310137 0.000000e+00 3657.0
30 TraesCS7A01G498200 chr7B 91.168 702 41 9 8193 8889 673304885 673304200 0.000000e+00 933.0
31 TraesCS7A01G498200 chr7B 97.148 526 15 0 2992 3517 673310065 673309540 0.000000e+00 889.0
32 TraesCS7A01G498200 chr7B 86.090 798 49 15 8903 9646 673303885 673303096 0.000000e+00 802.0
33 TraesCS7A01G498200 chr7B 82.367 845 115 20 7971 8798 672915088 672914261 0.000000e+00 704.0
34 TraesCS7A01G498200 chr7B 80.778 900 94 32 7973 8854 672841824 672840986 1.770000e-176 630.0
35 TraesCS7A01G498200 chr7B 79.038 520 65 22 7484 7974 672842411 672841907 5.620000e-82 316.0
36 TraesCS7A01G498200 chr7B 81.671 371 54 6 8119 8486 673124011 673123652 7.320000e-76 296.0
37 TraesCS7A01G498200 chr7B 85.016 307 25 13 9311 9611 673122695 673122404 9.480000e-75 292.0
38 TraesCS7A01G498200 chr7B 83.453 278 27 12 6749 7019 672843771 672843506 3.480000e-59 241.0
39 TraesCS7A01G498200 chr7B 75.129 583 71 44 8900 9453 673135925 673135388 1.270000e-48 206.0
40 TraesCS7A01G498200 chr7B 84.653 202 16 4 8900 9090 672913663 672913466 4.600000e-43 187.0
41 TraesCS7A01G498200 chr7B 94.872 78 4 0 2805 2882 673310138 673310061 1.320000e-23 122.0
42 TraesCS7A01G498200 chr7B 87.952 83 9 1 8797 8879 673136346 673136265 7.970000e-16 97.1
43 TraesCS7A01G498200 chr4A 96.078 306 11 1 2502 2806 209332212 209331907 1.870000e-136 497.0
44 TraesCS7A01G498200 chr4A 95.098 306 14 1 2502 2806 486117719 486118024 1.880000e-131 481.0
45 TraesCS7A01G498200 chr4A 94.481 308 16 1 2500 2806 628560850 628561157 3.150000e-129 473.0
46 TraesCS7A01G498200 chr3A 94.771 306 15 1 2502 2806 545355077 545354772 8.770000e-130 475.0
47 TraesCS7A01G498200 chr6A 93.910 312 17 2 2498 2808 12373223 12372913 4.080000e-128 470.0
48 TraesCS7A01G498200 chr4D 94.444 306 16 1 2502 2806 444466644 444466339 4.080000e-128 470.0
49 TraesCS7A01G498200 chr4D 100.000 30 0 0 3912 3941 123635851 123635880 1.000000e-03 56.5
50 TraesCS7A01G498200 chr2A 94.156 308 17 1 2503 2809 540047976 540047669 1.470000e-127 468.0
51 TraesCS7A01G498200 chr2A 93.871 310 17 2 2502 2809 565266902 565266593 5.280000e-127 466.0
52 TraesCS7A01G498200 chr2A 82.135 459 57 19 1820 2275 714211858 714211422 4.260000e-98 370.0
53 TraesCS7A01G498200 chr5B 92.260 323 22 3 2498 2819 383920928 383920608 1.140000e-123 455.0
54 TraesCS7A01G498200 chr2B 90.226 266 25 1 2002 2267 692167160 692166896 7.170000e-91 346.0
55 TraesCS7A01G498200 chr2D 90.421 261 24 1 2002 2262 576195691 576195432 9.280000e-90 342.0
56 TraesCS7A01G498200 chrUn 100.000 30 0 0 3912 3941 86461787 86461816 1.000000e-03 56.5
57 TraesCS7A01G498200 chrUn 100.000 30 0 0 3912 3941 222673487 222673458 1.000000e-03 56.5
58 TraesCS7A01G498200 chrUn 100.000 30 0 0 3912 3941 229496815 229496786 1.000000e-03 56.5
59 TraesCS7A01G498200 chrUn 100.000 30 0 0 3912 3941 237101258 237101229 1.000000e-03 56.5
60 TraesCS7A01G498200 chr6D 100.000 30 0 0 3912 3941 168781986 168782015 1.000000e-03 56.5
61 TraesCS7A01G498200 chr1D 100.000 30 0 0 3912 3941 141328896 141328867 1.000000e-03 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G498200 chr7A 688684443 688694088 9645 True 17813.000000 17813 100.000000 1 9646 1 chr7A.!!$R1 9645
1 TraesCS7A01G498200 chr7A 688456394 688459549 3155 True 410.333333 643 81.598333 6597 8847 3 chr7A.!!$R2 2250
2 TraesCS7A01G498200 chr7A 688625673 688627292 1619 True 317.000000 329 84.548500 8119 9611 2 chr7A.!!$R3 1492
3 TraesCS7A01G498200 chr7A 688661509 688663185 1676 True 211.925000 387 82.157500 7971 9453 4 chr7A.!!$R5 1482
4 TraesCS7A01G498200 chr7D 595721989 595731731 9742 True 2957.000000 8696 93.405600 1 9646 5 chr7D.!!$R6 9645
5 TraesCS7A01G498200 chr7D 595577499 595581364 3865 True 321.533333 627 84.534667 6597 8847 3 chr7D.!!$R3 2250
6 TraesCS7A01G498200 chr7D 595611961 595613555 1594 True 261.666667 318 84.088667 8119 9610 3 chr7D.!!$R4 1491
7 TraesCS7A01G498200 chr7D 595664283 595666651 2368 True 221.000000 233 79.702000 7718 9543 3 chr7D.!!$R5 1825
8 TraesCS7A01G498200 chr7B 673303096 673312654 9558 True 2334.333333 7603 93.103333 1 9646 6 chr7B.!!$R5 9645
9 TraesCS7A01G498200 chr7B 672913466 672915088 1622 True 445.500000 704 83.510000 7971 9090 2 chr7B.!!$R2 1119
10 TraesCS7A01G498200 chr7B 672840986 672843771 2785 True 395.666667 630 81.089667 6749 8854 3 chr7B.!!$R1 2105
11 TraesCS7A01G498200 chr7B 673122404 673124011 1607 True 294.000000 296 83.343500 8119 9611 2 chr7B.!!$R3 1492

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
518 532 0.102844 TCTGCTTTTGTTGCCACAGC 59.897 50.000 0.00 0.0 40.48 4.40 F
554 568 0.171231 GTTGCCCTGAAAGCGGAATC 59.829 55.000 0.00 0.0 0.00 2.52 F
1934 1971 0.392461 TACCTTCACCATGCCTTCGC 60.392 55.000 0.00 0.0 0.00 4.70 F
2579 2617 0.981183 AGGCCACCAACAGTAATCGA 59.019 50.000 5.01 0.0 0.00 3.59 F
2580 2618 1.066143 AGGCCACCAACAGTAATCGAG 60.066 52.381 5.01 0.0 0.00 4.04 F
2583 2621 1.338674 CCACCAACAGTAATCGAGGCA 60.339 52.381 0.00 0.0 0.00 4.75 F
2782 2820 1.349688 TGTAATCCGAGTTTGTGGCCT 59.650 47.619 3.32 0.0 0.00 5.19 F
3217 3257 1.610038 CACTGAATGCTTCCACTTGCA 59.390 47.619 0.00 0.0 43.67 4.08 F
4682 4760 2.143602 CTCCTTTTCCCCCATATCCCA 58.856 52.381 0.00 0.0 0.00 4.37 F
5592 5673 1.153005 GCTGGCATTCAGGAGGGAG 60.153 63.158 0.00 0.0 43.54 4.30 F
6155 6240 1.250328 TGAGTTGGCTCATTGCTTGG 58.750 50.000 0.00 0.0 45.94 3.61 F
8224 10231 0.178953 ATGGGCCTGACTGCAAAAGT 60.179 50.000 4.53 0.0 43.85 2.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1934 1971 1.229428 TGAAGCAGAAAAGTCGGCAG 58.771 50.000 0.00 0.00 46.27 4.85 R
2079 2116 1.473434 GCCATAACCTCCCTCTTGACG 60.473 57.143 0.00 0.00 0.00 4.35 R
2762 2800 1.349688 AGGCCACAAACTCGGATTACA 59.650 47.619 5.01 0.00 0.00 2.41 R
4435 4513 0.747283 CTTGCAGGATGGGCTCTCAC 60.747 60.000 0.00 0.00 35.86 3.51 R
4682 4760 9.359653 CAGAGATTATATGTTTCCCCTTGAAAT 57.640 33.333 0.00 0.00 44.44 2.17 R
4711 4789 7.257722 TCATGAGAAAAGGAGACAAAACAAAC 58.742 34.615 0.00 0.00 0.00 2.93 R
4840 4918 2.751436 GCAGATCGCAAGGCCCAA 60.751 61.111 0.00 0.00 41.79 4.12 R
5412 5493 5.185828 GGGCACACTTTCCAGAATTATCTTT 59.814 40.000 0.00 0.00 32.03 2.52 R
5759 5840 0.321564 CACGGATTGCTTCCAGTCCA 60.322 55.000 6.14 0.00 45.43 4.02 R
7692 9278 1.067213 GCTCTCTGTCTGTCTCCCAAC 60.067 57.143 0.00 0.00 0.00 3.77 R
8305 10312 1.279271 ACTCAGAATTTACTGCCGGCT 59.721 47.619 29.70 11.31 37.75 5.52 R
9115 12149 0.466124 GCTCTACTAGGGGCCAACAG 59.534 60.000 4.39 0.68 0.00 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 2.419574 CCGTTTGATCGGGTGGTTATCT 60.420 50.000 0.00 0.00 45.88 1.98
26 27 4.502604 CCGTTTGATCGGGTGGTTATCTAT 60.503 45.833 0.00 0.00 45.88 1.98
29 30 3.239449 TGATCGGGTGGTTATCTATGCT 58.761 45.455 0.00 0.00 0.00 3.79
42 43 6.479884 GTTATCTATGCTGGGGATTTGATCT 58.520 40.000 0.00 0.00 0.00 2.75
93 94 1.302511 ATTCTGCCGAGCGGTTTGT 60.303 52.632 10.94 0.00 36.18 2.83
162 163 1.771073 TTTCTGACGCACGCTGTTGG 61.771 55.000 0.00 0.00 0.00 3.77
167 168 2.042520 GACGCACGCTGTTGGTTTGA 62.043 55.000 0.00 0.00 0.00 2.69
180 181 6.292488 GCTGTTGGTTTGATGATTGTTTTCAG 60.292 38.462 0.00 0.00 0.00 3.02
243 252 5.764686 AGGCATATGCTTCATTCGATTTGTA 59.235 36.000 26.12 0.00 41.70 2.41
256 265 3.512329 TCGATTTGTAGTGACTTGGCCTA 59.488 43.478 3.32 0.00 0.00 3.93
277 286 2.907892 TGATCCTTTGGAGAGGTCAGT 58.092 47.619 0.00 0.00 38.04 3.41
355 364 0.765510 GGTCCTGTGGTTTCTGGAGT 59.234 55.000 0.00 0.00 36.41 3.85
357 366 1.694696 GTCCTGTGGTTTCTGGAGTCT 59.305 52.381 0.00 0.00 36.41 3.24
358 367 2.104963 GTCCTGTGGTTTCTGGAGTCTT 59.895 50.000 0.00 0.00 36.41 3.01
398 410 1.412079 ATGTGCCTTTTTCACTGCCA 58.588 45.000 0.00 0.00 35.58 4.92
464 478 4.504858 GAGGTGACATCTTTACGGAATGT 58.495 43.478 0.00 0.00 0.00 2.71
465 479 5.394883 GGAGGTGACATCTTTACGGAATGTA 60.395 44.000 0.00 0.00 0.00 2.29
466 480 6.235231 AGGTGACATCTTTACGGAATGTAT 57.765 37.500 0.00 0.00 31.81 2.29
467 481 6.049149 AGGTGACATCTTTACGGAATGTATG 58.951 40.000 0.00 0.02 31.81 2.39
518 532 0.102844 TCTGCTTTTGTTGCCACAGC 59.897 50.000 0.00 0.00 40.48 4.40
554 568 0.171231 GTTGCCCTGAAAGCGGAATC 59.829 55.000 0.00 0.00 0.00 2.52
560 574 2.356741 CCCTGAAAGCGGAATCCCTTTA 60.357 50.000 13.28 4.92 31.85 1.85
570 584 3.954258 CGGAATCCCTTTAGGCATTTTCT 59.046 43.478 0.00 0.00 34.51 2.52
575 589 5.112129 TCCCTTTAGGCATTTTCTCTACC 57.888 43.478 0.00 0.00 34.51 3.18
588 602 6.554334 TTTTCTCTACCGAATTTGACTTGG 57.446 37.500 0.00 0.00 0.00 3.61
595 609 3.312421 ACCGAATTTGACTTGGATATGCG 59.688 43.478 0.00 0.00 0.00 4.73
622 636 6.182627 ACCTGTTGATCATATTTTGCTCTCA 58.817 36.000 0.00 0.00 0.00 3.27
624 638 6.318144 CCTGTTGATCATATTTTGCTCTCACT 59.682 38.462 0.00 0.00 0.00 3.41
625 639 7.148120 CCTGTTGATCATATTTTGCTCTCACTT 60.148 37.037 0.00 0.00 0.00 3.16
629 643 8.339344 TGATCATATTTTGCTCTCACTTCAAA 57.661 30.769 0.00 0.00 0.00 2.69
645 659 4.142381 ACTTCAAACTTGTTTCTCCAGCAC 60.142 41.667 0.00 0.00 0.00 4.40
650 664 3.554934 ACTTGTTTCTCCAGCACATTCA 58.445 40.909 0.00 0.00 0.00 2.57
668 682 6.093909 CACATTCATAGTACTGTGCAATCCAA 59.906 38.462 14.34 3.55 33.35 3.53
671 685 7.701539 TTCATAGTACTGTGCAATCCAATTT 57.298 32.000 14.34 0.00 0.00 1.82
672 686 7.087409 TCATAGTACTGTGCAATCCAATTTG 57.913 36.000 14.34 0.00 0.00 2.32
676 690 4.669206 ACTGTGCAATCCAATTTGTCAA 57.331 36.364 0.00 0.00 0.00 3.18
686 700 5.999205 TCCAATTTGTCAACTATTGCCAT 57.001 34.783 4.94 0.00 0.00 4.40
687 701 6.357579 TCCAATTTGTCAACTATTGCCATT 57.642 33.333 4.94 0.00 0.00 3.16
688 702 7.473735 TCCAATTTGTCAACTATTGCCATTA 57.526 32.000 4.94 0.00 0.00 1.90
690 704 9.194972 TCCAATTTGTCAACTATTGCCATTATA 57.805 29.630 4.94 0.00 0.00 0.98
713 727 6.456795 AGAAACTATCTAAATTTGGGCAGC 57.543 37.500 0.00 0.00 36.32 5.25
714 728 6.190587 AGAAACTATCTAAATTTGGGCAGCT 58.809 36.000 0.00 0.00 36.32 4.24
715 729 5.841957 AACTATCTAAATTTGGGCAGCTG 57.158 39.130 10.11 10.11 0.00 4.24
716 730 4.860022 ACTATCTAAATTTGGGCAGCTGT 58.140 39.130 16.64 0.00 0.00 4.40
717 731 5.264395 ACTATCTAAATTTGGGCAGCTGTT 58.736 37.500 16.64 1.94 0.00 3.16
718 732 3.940209 TCTAAATTTGGGCAGCTGTTG 57.060 42.857 16.64 0.00 0.00 3.33
867 901 1.415659 ACTTGCTGTTCTCAGAGCACT 59.584 47.619 1.70 0.00 43.76 4.40
911 945 8.084590 AGTAGAAATTAGTGTGTGTAAGCAAC 57.915 34.615 0.00 0.00 0.00 4.17
930 964 3.364441 GCCGGCAACAGCACATGA 61.364 61.111 24.80 0.00 40.71 3.07
1070 1104 1.774856 GTGGCCTAATGTAGGGGATGT 59.225 52.381 3.32 0.00 46.32 3.06
1072 1106 3.008049 GTGGCCTAATGTAGGGGATGTAG 59.992 52.174 3.32 0.00 46.32 2.74
1762 1799 4.276678 CACAAGATGCTGTTCAAAGAAGGA 59.723 41.667 0.00 0.00 0.00 3.36
1934 1971 0.392461 TACCTTCACCATGCCTTCGC 60.392 55.000 0.00 0.00 0.00 4.70
1935 1972 1.377725 CCTTCACCATGCCTTCGCT 60.378 57.895 0.00 0.00 35.36 4.93
2079 2116 8.254508 GGTGAGGGTATAGATGAGATGAATAAC 58.745 40.741 0.00 0.00 0.00 1.89
2392 2430 3.266510 TGGTCTGTGAAGGATGCATAC 57.733 47.619 0.00 0.00 0.00 2.39
2431 2469 9.681062 AAGCCTAGAACTGCATACTAAAATTTA 57.319 29.630 0.00 0.00 0.00 1.40
2497 2535 2.094894 CCAGTCGCTTCTTGTAGCATTG 59.905 50.000 0.00 0.00 41.28 2.82
2502 2540 4.806247 GTCGCTTCTTGTAGCATTGTAGAT 59.194 41.667 0.00 0.00 41.28 1.98
2503 2541 5.977725 GTCGCTTCTTGTAGCATTGTAGATA 59.022 40.000 0.00 0.00 41.28 1.98
2504 2542 5.977725 TCGCTTCTTGTAGCATTGTAGATAC 59.022 40.000 0.00 0.00 41.28 2.24
2505 2543 5.980116 CGCTTCTTGTAGCATTGTAGATACT 59.020 40.000 0.00 0.00 41.28 2.12
2506 2544 6.143118 CGCTTCTTGTAGCATTGTAGATACTC 59.857 42.308 0.00 0.00 41.28 2.59
2507 2545 6.422400 GCTTCTTGTAGCATTGTAGATACTCC 59.578 42.308 0.00 0.00 40.89 3.85
2508 2546 6.406692 TCTTGTAGCATTGTAGATACTCCC 57.593 41.667 0.00 0.00 31.92 4.30
2509 2547 6.136857 TCTTGTAGCATTGTAGATACTCCCT 58.863 40.000 0.00 0.00 31.92 4.20
2510 2548 6.265649 TCTTGTAGCATTGTAGATACTCCCTC 59.734 42.308 0.00 0.00 31.92 4.30
2511 2549 4.833380 TGTAGCATTGTAGATACTCCCTCC 59.167 45.833 0.00 0.00 31.92 4.30
2512 2550 3.928754 AGCATTGTAGATACTCCCTCCA 58.071 45.455 0.00 0.00 0.00 3.86
2513 2551 4.497516 AGCATTGTAGATACTCCCTCCAT 58.502 43.478 0.00 0.00 0.00 3.41
2514 2552 4.910304 AGCATTGTAGATACTCCCTCCATT 59.090 41.667 0.00 0.00 0.00 3.16
2515 2553 5.370880 AGCATTGTAGATACTCCCTCCATTT 59.629 40.000 0.00 0.00 0.00 2.32
2516 2554 6.064717 GCATTGTAGATACTCCCTCCATTTT 58.935 40.000 0.00 0.00 0.00 1.82
2517 2555 6.547510 GCATTGTAGATACTCCCTCCATTTTT 59.452 38.462 0.00 0.00 0.00 1.94
2518 2556 7.719633 GCATTGTAGATACTCCCTCCATTTTTA 59.280 37.037 0.00 0.00 0.00 1.52
2519 2557 9.799106 CATTGTAGATACTCCCTCCATTTTTAT 57.201 33.333 0.00 0.00 0.00 1.40
2528 2566 7.004691 ACTCCCTCCATTTTTATATACAAGGC 58.995 38.462 0.00 0.00 0.00 4.35
2529 2567 6.311735 TCCCTCCATTTTTATATACAAGGCC 58.688 40.000 0.00 0.00 0.00 5.19
2530 2568 6.074648 CCCTCCATTTTTATATACAAGGCCA 58.925 40.000 5.01 0.00 0.00 5.36
2531 2569 6.015434 CCCTCCATTTTTATATACAAGGCCAC 60.015 42.308 5.01 0.00 0.00 5.01
2532 2570 6.777580 CCTCCATTTTTATATACAAGGCCACT 59.222 38.462 5.01 0.00 0.00 4.00
2533 2571 7.942341 CCTCCATTTTTATATACAAGGCCACTA 59.058 37.037 5.01 0.00 0.00 2.74
2534 2572 9.520515 CTCCATTTTTATATACAAGGCCACTAT 57.479 33.333 5.01 0.00 0.00 2.12
2535 2573 9.295825 TCCATTTTTATATACAAGGCCACTATG 57.704 33.333 5.01 0.21 0.00 2.23
2536 2574 8.522830 CCATTTTTATATACAAGGCCACTATGG 58.477 37.037 5.01 0.00 41.55 2.74
2537 2575 9.295825 CATTTTTATATACAAGGCCACTATGGA 57.704 33.333 5.01 0.00 40.96 3.41
2538 2576 9.875708 ATTTTTATATACAAGGCCACTATGGAA 57.124 29.630 5.01 0.00 40.96 3.53
2539 2577 9.875708 TTTTTATATACAAGGCCACTATGGAAT 57.124 29.630 5.01 0.00 40.96 3.01
2544 2582 5.904984 ACAAGGCCACTATGGAATATACA 57.095 39.130 5.01 0.00 40.96 2.29
2545 2583 6.454223 ACAAGGCCACTATGGAATATACAT 57.546 37.500 5.01 0.00 40.96 2.29
2546 2584 6.852404 ACAAGGCCACTATGGAATATACATT 58.148 36.000 5.01 0.00 40.96 2.71
2547 2585 7.297614 ACAAGGCCACTATGGAATATACATTT 58.702 34.615 5.01 0.00 40.96 2.32
2548 2586 7.784550 ACAAGGCCACTATGGAATATACATTTT 59.215 33.333 5.01 0.00 40.96 1.82
2549 2587 7.765695 AGGCCACTATGGAATATACATTTTG 57.234 36.000 5.01 0.00 40.96 2.44
2550 2588 6.209391 AGGCCACTATGGAATATACATTTTGC 59.791 38.462 5.01 0.00 40.96 3.68
2551 2589 6.015519 GGCCACTATGGAATATACATTTTGCA 60.016 38.462 0.00 0.00 40.96 4.08
2552 2590 7.309990 GGCCACTATGGAATATACATTTTGCAT 60.310 37.037 0.00 5.15 40.96 3.96
2553 2591 7.756722 GCCACTATGGAATATACATTTTGCATC 59.243 37.037 0.00 0.00 40.96 3.91
2554 2592 9.017509 CCACTATGGAATATACATTTTGCATCT 57.982 33.333 3.41 0.00 40.96 2.90
2564 2602 5.520376 ACATTTTGCATCTATACAAGGCC 57.480 39.130 0.00 0.00 0.00 5.19
2565 2603 4.955450 ACATTTTGCATCTATACAAGGCCA 59.045 37.500 5.01 0.00 0.00 5.36
2566 2604 4.981806 TTTTGCATCTATACAAGGCCAC 57.018 40.909 5.01 0.00 0.00 5.01
2567 2605 2.638480 TGCATCTATACAAGGCCACC 57.362 50.000 5.01 0.00 0.00 4.61
2568 2606 1.843206 TGCATCTATACAAGGCCACCA 59.157 47.619 5.01 0.00 0.00 4.17
2569 2607 2.240921 TGCATCTATACAAGGCCACCAA 59.759 45.455 5.01 0.00 0.00 3.67
2570 2608 2.618709 GCATCTATACAAGGCCACCAAC 59.381 50.000 5.01 0.00 0.00 3.77
2571 2609 3.884895 CATCTATACAAGGCCACCAACA 58.115 45.455 5.01 0.00 0.00 3.33
2572 2610 3.627395 TCTATACAAGGCCACCAACAG 57.373 47.619 5.01 0.00 0.00 3.16
2573 2611 2.910319 TCTATACAAGGCCACCAACAGT 59.090 45.455 5.01 0.00 0.00 3.55
2574 2612 4.098155 TCTATACAAGGCCACCAACAGTA 58.902 43.478 5.01 0.00 0.00 2.74
2575 2613 3.799432 ATACAAGGCCACCAACAGTAA 57.201 42.857 5.01 0.00 0.00 2.24
2576 2614 2.675658 ACAAGGCCACCAACAGTAAT 57.324 45.000 5.01 0.00 0.00 1.89
2577 2615 2.514803 ACAAGGCCACCAACAGTAATC 58.485 47.619 5.01 0.00 0.00 1.75
2578 2616 1.468520 CAAGGCCACCAACAGTAATCG 59.531 52.381 5.01 0.00 0.00 3.34
2579 2617 0.981183 AGGCCACCAACAGTAATCGA 59.019 50.000 5.01 0.00 0.00 3.59
2580 2618 1.066143 AGGCCACCAACAGTAATCGAG 60.066 52.381 5.01 0.00 0.00 4.04
2581 2619 1.369625 GCCACCAACAGTAATCGAGG 58.630 55.000 0.00 0.00 0.00 4.63
2582 2620 1.369625 CCACCAACAGTAATCGAGGC 58.630 55.000 0.00 0.00 0.00 4.70
2583 2621 1.338674 CCACCAACAGTAATCGAGGCA 60.339 52.381 0.00 0.00 0.00 4.75
2584 2622 2.422597 CACCAACAGTAATCGAGGCAA 58.577 47.619 0.00 0.00 0.00 4.52
2585 2623 2.811431 CACCAACAGTAATCGAGGCAAA 59.189 45.455 0.00 0.00 0.00 3.68
2586 2624 3.252215 CACCAACAGTAATCGAGGCAAAA 59.748 43.478 0.00 0.00 0.00 2.44
2587 2625 4.079253 ACCAACAGTAATCGAGGCAAAAT 58.921 39.130 0.00 0.00 0.00 1.82
2588 2626 4.522789 ACCAACAGTAATCGAGGCAAAATT 59.477 37.500 0.00 0.00 0.00 1.82
2589 2627 5.708230 ACCAACAGTAATCGAGGCAAAATTA 59.292 36.000 0.00 0.00 0.00 1.40
2590 2628 6.207810 ACCAACAGTAATCGAGGCAAAATTAA 59.792 34.615 0.00 0.00 0.00 1.40
2591 2629 7.093945 ACCAACAGTAATCGAGGCAAAATTAAT 60.094 33.333 0.00 0.00 0.00 1.40
2592 2630 7.220683 CCAACAGTAATCGAGGCAAAATTAATG 59.779 37.037 9.90 9.90 37.13 1.90
2593 2631 7.624360 ACAGTAATCGAGGCAAAATTAATGA 57.376 32.000 15.28 0.00 35.57 2.57
2594 2632 8.225603 ACAGTAATCGAGGCAAAATTAATGAT 57.774 30.769 15.28 3.33 35.57 2.45
2595 2633 9.337396 ACAGTAATCGAGGCAAAATTAATGATA 57.663 29.630 15.28 0.00 35.57 2.15
2602 2640 9.950680 TCGAGGCAAAATTAATGATATTTTCTC 57.049 29.630 0.00 0.00 34.01 2.87
2603 2641 8.895845 CGAGGCAAAATTAATGATATTTTCTCG 58.104 33.333 13.06 13.06 39.77 4.04
2604 2642 9.736023 GAGGCAAAATTAATGATATTTTCTCGT 57.264 29.630 0.00 0.00 34.01 4.18
2628 2666 9.737025 CGTACTAAGAACTTGTTTAATACTTGC 57.263 33.333 0.00 0.00 0.00 4.01
2632 2670 7.873739 AAGAACTTGTTTAATACTTGCATGC 57.126 32.000 11.82 11.82 0.00 4.06
2633 2671 6.980593 AGAACTTGTTTAATACTTGCATGCA 58.019 32.000 18.46 18.46 0.00 3.96
2634 2672 7.605449 AGAACTTGTTTAATACTTGCATGCAT 58.395 30.769 23.37 10.46 0.00 3.96
2635 2673 7.543172 AGAACTTGTTTAATACTTGCATGCATG 59.457 33.333 26.93 26.93 0.00 4.06
2651 2689 5.588240 CATGCATGCAGTCATAATGAAAGT 58.412 37.500 26.69 0.11 32.12 2.66
2652 2690 5.648178 TGCATGCAGTCATAATGAAAGTT 57.352 34.783 18.46 0.00 0.00 2.66
2653 2691 6.756299 TGCATGCAGTCATAATGAAAGTTA 57.244 33.333 18.46 0.00 0.00 2.24
2654 2692 6.788243 TGCATGCAGTCATAATGAAAGTTAG 58.212 36.000 18.46 0.00 0.00 2.34
2655 2693 5.684626 GCATGCAGTCATAATGAAAGTTAGC 59.315 40.000 14.21 0.00 0.00 3.09
2656 2694 6.459298 GCATGCAGTCATAATGAAAGTTAGCT 60.459 38.462 14.21 0.00 0.00 3.32
2657 2695 7.254898 GCATGCAGTCATAATGAAAGTTAGCTA 60.255 37.037 14.21 0.00 0.00 3.32
2658 2696 7.539712 TGCAGTCATAATGAAAGTTAGCTAC 57.460 36.000 0.00 0.00 0.00 3.58
2659 2697 7.331026 TGCAGTCATAATGAAAGTTAGCTACT 58.669 34.615 0.00 0.00 39.32 2.57
2661 2699 8.331742 GCAGTCATAATGAAAGTTAGCTACTTC 58.668 37.037 0.00 0.00 46.34 3.01
2662 2700 9.593134 CAGTCATAATGAAAGTTAGCTACTTCT 57.407 33.333 0.00 0.00 46.34 2.85
2663 2701 9.810545 AGTCATAATGAAAGTTAGCTACTTCTC 57.189 33.333 0.00 3.10 46.34 2.87
2664 2702 9.036671 GTCATAATGAAAGTTAGCTACTTCTCC 57.963 37.037 0.00 0.00 46.34 3.71
2665 2703 8.758829 TCATAATGAAAGTTAGCTACTTCTCCA 58.241 33.333 0.00 1.68 46.34 3.86
2666 2704 8.821894 CATAATGAAAGTTAGCTACTTCTCCAC 58.178 37.037 0.00 0.00 46.34 4.02
2667 2705 6.613153 ATGAAAGTTAGCTACTTCTCCACT 57.387 37.500 0.00 0.00 46.34 4.00
2668 2706 6.026947 TGAAAGTTAGCTACTTCTCCACTC 57.973 41.667 0.00 0.00 46.34 3.51
2669 2707 5.538813 TGAAAGTTAGCTACTTCTCCACTCA 59.461 40.000 0.00 0.00 46.34 3.41
2670 2708 5.652994 AAGTTAGCTACTTCTCCACTCAG 57.347 43.478 0.00 0.00 43.67 3.35
2671 2709 4.668636 AGTTAGCTACTTCTCCACTCAGT 58.331 43.478 0.00 0.00 31.29 3.41
2672 2710 5.081032 AGTTAGCTACTTCTCCACTCAGTT 58.919 41.667 0.00 0.00 31.29 3.16
2673 2711 5.540719 AGTTAGCTACTTCTCCACTCAGTTT 59.459 40.000 0.00 0.00 31.29 2.66
2674 2712 4.529109 AGCTACTTCTCCACTCAGTTTC 57.471 45.455 0.00 0.00 0.00 2.78
2675 2713 4.156477 AGCTACTTCTCCACTCAGTTTCT 58.844 43.478 0.00 0.00 0.00 2.52
2676 2714 4.591072 AGCTACTTCTCCACTCAGTTTCTT 59.409 41.667 0.00 0.00 0.00 2.52
2677 2715 5.071115 AGCTACTTCTCCACTCAGTTTCTTT 59.929 40.000 0.00 0.00 0.00 2.52
2678 2716 5.178438 GCTACTTCTCCACTCAGTTTCTTTG 59.822 44.000 0.00 0.00 0.00 2.77
2679 2717 3.879892 ACTTCTCCACTCAGTTTCTTTGC 59.120 43.478 0.00 0.00 0.00 3.68
2680 2718 3.558931 TCTCCACTCAGTTTCTTTGCA 57.441 42.857 0.00 0.00 0.00 4.08
2681 2719 4.090761 TCTCCACTCAGTTTCTTTGCAT 57.909 40.909 0.00 0.00 0.00 3.96
2682 2720 3.817084 TCTCCACTCAGTTTCTTTGCATG 59.183 43.478 0.00 0.00 0.00 4.06
2683 2721 2.294233 TCCACTCAGTTTCTTTGCATGC 59.706 45.455 11.82 11.82 0.00 4.06
2684 2722 2.034939 CCACTCAGTTTCTTTGCATGCA 59.965 45.455 18.46 18.46 0.00 3.96
2685 2723 3.305813 CCACTCAGTTTCTTTGCATGCAT 60.306 43.478 23.37 0.58 0.00 3.96
2686 2724 3.673338 CACTCAGTTTCTTTGCATGCATG 59.327 43.478 23.37 22.70 0.00 4.06
2698 2736 3.837213 GCATGCATGCGGAGTATTAAT 57.163 42.857 33.99 0.00 44.67 1.40
2699 2737 3.495193 GCATGCATGCGGAGTATTAATG 58.505 45.455 33.99 8.73 44.67 1.90
2700 2738 3.189080 GCATGCATGCGGAGTATTAATGA 59.811 43.478 33.99 0.00 44.67 2.57
2701 2739 4.142534 GCATGCATGCGGAGTATTAATGAT 60.143 41.667 33.99 0.00 44.67 2.45
2702 2740 5.566623 CATGCATGCGGAGTATTAATGATC 58.433 41.667 14.93 0.00 28.75 2.92
2703 2741 4.002982 TGCATGCGGAGTATTAATGATCC 58.997 43.478 14.09 9.63 0.00 3.36
2704 2742 3.375299 GCATGCGGAGTATTAATGATCCC 59.625 47.826 0.00 8.00 0.00 3.85
2705 2743 4.578871 CATGCGGAGTATTAATGATCCCA 58.421 43.478 12.66 11.79 0.00 4.37
2706 2744 4.271696 TGCGGAGTATTAATGATCCCAG 57.728 45.455 12.66 4.27 0.00 4.45
2707 2745 3.646162 TGCGGAGTATTAATGATCCCAGT 59.354 43.478 12.66 0.00 0.00 4.00
2708 2746 4.836175 TGCGGAGTATTAATGATCCCAGTA 59.164 41.667 12.66 1.05 0.00 2.74
2709 2747 5.305902 TGCGGAGTATTAATGATCCCAGTAA 59.694 40.000 12.66 0.00 37.27 2.24
2710 2748 6.183361 TGCGGAGTATTAATGATCCCAGTAAA 60.183 38.462 12.66 0.00 36.58 2.01
2711 2749 6.147328 GCGGAGTATTAATGATCCCAGTAAAC 59.853 42.308 12.66 0.00 36.58 2.01
2712 2750 7.214381 CGGAGTATTAATGATCCCAGTAAACA 58.786 38.462 12.66 0.00 36.58 2.83
2713 2751 7.713507 CGGAGTATTAATGATCCCAGTAAACAA 59.286 37.037 12.66 0.00 36.58 2.83
2714 2752 9.057089 GGAGTATTAATGATCCCAGTAAACAAG 57.943 37.037 8.81 0.00 36.58 3.16
2715 2753 9.832445 GAGTATTAATGATCCCAGTAAACAAGA 57.168 33.333 0.00 0.00 36.58 3.02
2719 2757 9.753674 ATTAATGATCCCAGTAAACAAGAAGAA 57.246 29.630 0.00 0.00 36.58 2.52
2720 2758 9.581289 TTAATGATCCCAGTAAACAAGAAGAAA 57.419 29.630 0.00 0.00 30.92 2.52
2721 2759 8.477419 AATGATCCCAGTAAACAAGAAGAAAA 57.523 30.769 0.00 0.00 0.00 2.29
2722 2760 8.655935 ATGATCCCAGTAAACAAGAAGAAAAT 57.344 30.769 0.00 0.00 0.00 1.82
2723 2761 8.110860 TGATCCCAGTAAACAAGAAGAAAATC 57.889 34.615 0.00 0.00 0.00 2.17
2724 2762 7.944554 TGATCCCAGTAAACAAGAAGAAAATCT 59.055 33.333 0.00 0.00 0.00 2.40
2725 2763 7.510549 TCCCAGTAAACAAGAAGAAAATCTG 57.489 36.000 0.00 0.00 0.00 2.90
2726 2764 7.287061 TCCCAGTAAACAAGAAGAAAATCTGA 58.713 34.615 0.00 0.00 0.00 3.27
2727 2765 7.228706 TCCCAGTAAACAAGAAGAAAATCTGAC 59.771 37.037 0.00 0.00 0.00 3.51
2728 2766 7.229506 CCCAGTAAACAAGAAGAAAATCTGACT 59.770 37.037 0.00 0.00 0.00 3.41
2729 2767 8.624776 CCAGTAAACAAGAAGAAAATCTGACTT 58.375 33.333 0.00 0.00 0.00 3.01
2730 2768 9.443283 CAGTAAACAAGAAGAAAATCTGACTTG 57.557 33.333 17.73 17.73 42.15 3.16
2731 2769 9.178758 AGTAAACAAGAAGAAAATCTGACTTGT 57.821 29.630 18.57 18.57 46.38 3.16
2763 2801 8.994429 TGCATTAAATTTTACATTGGTACCTG 57.006 30.769 14.36 6.53 0.00 4.00
2764 2802 8.589338 TGCATTAAATTTTACATTGGTACCTGT 58.411 29.630 14.36 12.58 0.00 4.00
2770 2808 6.988622 TTTTACATTGGTACCTGTAATCCG 57.011 37.500 21.20 4.19 36.07 4.18
2771 2809 5.936187 TTACATTGGTACCTGTAATCCGA 57.064 39.130 18.22 1.89 32.87 4.55
2772 2810 4.402056 ACATTGGTACCTGTAATCCGAG 57.598 45.455 14.36 0.00 0.00 4.63
2773 2811 3.773119 ACATTGGTACCTGTAATCCGAGT 59.227 43.478 14.36 0.00 0.00 4.18
2774 2812 4.224370 ACATTGGTACCTGTAATCCGAGTT 59.776 41.667 14.36 0.00 0.00 3.01
2775 2813 4.895668 TTGGTACCTGTAATCCGAGTTT 57.104 40.909 14.36 0.00 0.00 2.66
2776 2814 4.196626 TGGTACCTGTAATCCGAGTTTG 57.803 45.455 14.36 0.00 0.00 2.93
2777 2815 3.579586 TGGTACCTGTAATCCGAGTTTGT 59.420 43.478 14.36 0.00 0.00 2.83
2778 2816 3.930848 GGTACCTGTAATCCGAGTTTGTG 59.069 47.826 4.06 0.00 0.00 3.33
2779 2817 3.053831 ACCTGTAATCCGAGTTTGTGG 57.946 47.619 0.00 0.00 0.00 4.17
2780 2818 1.737793 CCTGTAATCCGAGTTTGTGGC 59.262 52.381 0.00 0.00 0.00 5.01
2781 2819 1.737793 CTGTAATCCGAGTTTGTGGCC 59.262 52.381 0.00 0.00 0.00 5.36
2782 2820 1.349688 TGTAATCCGAGTTTGTGGCCT 59.650 47.619 3.32 0.00 0.00 5.19
2783 2821 2.224670 TGTAATCCGAGTTTGTGGCCTT 60.225 45.455 3.32 0.00 0.00 4.35
2784 2822 1.995376 AATCCGAGTTTGTGGCCTTT 58.005 45.000 3.32 0.00 0.00 3.11
2785 2823 1.995376 ATCCGAGTTTGTGGCCTTTT 58.005 45.000 3.32 0.00 0.00 2.27
2786 2824 2.642154 TCCGAGTTTGTGGCCTTTTA 57.358 45.000 3.32 0.00 0.00 1.52
2787 2825 3.149005 TCCGAGTTTGTGGCCTTTTAT 57.851 42.857 3.32 0.00 0.00 1.40
2788 2826 4.289238 TCCGAGTTTGTGGCCTTTTATA 57.711 40.909 3.32 0.00 0.00 0.98
2789 2827 4.850680 TCCGAGTTTGTGGCCTTTTATAT 58.149 39.130 3.32 0.00 0.00 0.86
2790 2828 5.991861 TCCGAGTTTGTGGCCTTTTATATA 58.008 37.500 3.32 0.00 0.00 0.86
2791 2829 6.416415 TCCGAGTTTGTGGCCTTTTATATAA 58.584 36.000 3.32 0.00 0.00 0.98
2792 2830 6.885376 TCCGAGTTTGTGGCCTTTTATATAAA 59.115 34.615 3.32 3.71 0.00 1.40
2793 2831 7.393796 TCCGAGTTTGTGGCCTTTTATATAAAA 59.606 33.333 17.54 17.54 34.35 1.52
2794 2832 8.030106 CCGAGTTTGTGGCCTTTTATATAAAAA 58.970 33.333 18.74 4.47 35.04 1.94
2795 2833 9.581099 CGAGTTTGTGGCCTTTTATATAAAAAT 57.419 29.630 18.74 0.00 35.04 1.82
2797 2835 9.665719 AGTTTGTGGCCTTTTATATAAAAATGG 57.334 29.630 18.74 17.54 36.95 3.16
2798 2836 9.660180 GTTTGTGGCCTTTTATATAAAAATGGA 57.340 29.630 21.79 6.86 36.32 3.41
2799 2837 9.883142 TTTGTGGCCTTTTATATAAAAATGGAG 57.117 29.630 21.79 11.53 36.32 3.86
2800 2838 8.017418 TGTGGCCTTTTATATAAAAATGGAGG 57.983 34.615 21.79 18.34 36.32 4.30
2801 2839 7.070571 TGTGGCCTTTTATATAAAAATGGAGGG 59.929 37.037 21.79 17.66 36.32 4.30
2802 2840 7.289084 GTGGCCTTTTATATAAAAATGGAGGGA 59.711 37.037 21.79 5.32 36.32 4.20
2803 2841 7.508977 TGGCCTTTTATATAAAAATGGAGGGAG 59.491 37.037 21.79 9.38 36.32 4.30
2828 2866 3.237268 TGGCATTTCTTACCAGTGGTT 57.763 42.857 22.49 4.71 37.09 3.67
2903 2941 4.411327 CGAAAACGATATTGTGCATTGGT 58.589 39.130 0.00 0.00 0.00 3.67
2960 2998 9.677567 TTTGAGAGTAGTTTTCACATTAAATGC 57.322 29.630 0.00 0.00 0.00 3.56
2962 3000 7.172532 TGAGAGTAGTTTTCACATTAAATGCGT 59.827 33.333 0.00 0.00 0.00 5.24
2977 3015 9.848172 CATTAAATGCGTCCTTAATTAAATTGC 57.152 29.630 0.00 2.55 0.00 3.56
2985 3023 9.724839 GCGTCCTTAATTAAATTGCATTTAGTA 57.275 29.630 0.00 0.00 36.23 1.82
3014 3052 6.688385 CACATGCTGTTCTATATTTTGTTCCG 59.312 38.462 0.00 0.00 0.00 4.30
3032 3070 2.023673 CCGCCCTTCTGATTATTTGCA 58.976 47.619 0.00 0.00 0.00 4.08
3155 3195 4.695455 GGTTTGCATCTTGTAGCAGTCTAA 59.305 41.667 0.00 0.00 42.39 2.10
3215 3255 3.814842 TGTACACTGAATGCTTCCACTTG 59.185 43.478 0.00 0.00 0.00 3.16
3217 3257 1.610038 CACTGAATGCTTCCACTTGCA 59.390 47.619 0.00 0.00 43.67 4.08
3543 3619 4.406456 AGTGCATTTCAATTCCCACTGTA 58.594 39.130 0.00 0.00 32.80 2.74
3643 3721 3.025287 ACCGTTGGTGCATTTCATTTC 57.975 42.857 0.00 0.00 32.98 2.17
3687 3765 4.258702 TCTCTTTGTGCCTAAGACACTC 57.741 45.455 0.00 0.00 38.86 3.51
3910 3988 7.646130 CCATGTTTTCTTGTCTAAAGCGTTAAA 59.354 33.333 0.00 0.00 0.00 1.52
3911 3989 8.682016 CATGTTTTCTTGTCTAAAGCGTTAAAG 58.318 33.333 0.00 0.00 0.00 1.85
4066 4144 4.962155 AGTTTAAGTAGTTGCAGAGCAGT 58.038 39.130 0.00 0.00 40.61 4.40
4435 4513 7.063780 GTGAAATAGAAAATGGGCAACTTCATG 59.936 37.037 0.00 0.00 0.00 3.07
4682 4760 2.143602 CTCCTTTTCCCCCATATCCCA 58.856 52.381 0.00 0.00 0.00 4.37
4711 4789 4.603610 AGGGGAAACATATAATCTCTGGGG 59.396 45.833 0.00 0.00 0.00 4.96
4720 4798 8.066612 ACATATAATCTCTGGGGTTTGTTTTG 57.933 34.615 0.00 0.00 0.00 2.44
4840 4918 4.675063 AGAAAATATGGTGGAACAGGGT 57.325 40.909 0.00 0.00 41.80 4.34
5349 5430 4.159135 AGTTCTTTGGCAGCAATCTTATGG 59.841 41.667 0.00 0.00 0.00 2.74
5412 5493 4.098807 TCTCCAATGGTTTCATATCGACGA 59.901 41.667 0.00 0.00 32.44 4.20
5555 5636 2.167398 TTTCCAGTTCCCGAGCCGAG 62.167 60.000 0.00 0.00 0.00 4.63
5592 5673 1.153005 GCTGGCATTCAGGAGGGAG 60.153 63.158 0.00 0.00 43.54 4.30
5792 5873 2.317609 CCGTGCAGTACAGTGCCAC 61.318 63.158 6.58 4.57 43.28 5.01
5849 5931 8.177663 ACAAAATTCTCAATTGTCTATGCTACG 58.822 33.333 5.13 0.00 32.02 3.51
6119 6203 5.185056 TCTGAACTTAAAAATAGGCAAGGGC 59.815 40.000 0.00 0.00 40.13 5.19
6155 6240 1.250328 TGAGTTGGCTCATTGCTTGG 58.750 50.000 0.00 0.00 45.94 3.61
6216 6301 9.208022 CTCTTGTTGTCTACAATGATTAGTTGA 57.792 33.333 0.22 0.00 45.31 3.18
6237 6322 5.158141 TGACCTCCTTGCTTCCTATATCAT 58.842 41.667 0.00 0.00 0.00 2.45
6356 6441 7.448420 CCTCATCTTGTGATATCATTACTGGT 58.552 38.462 9.02 0.00 35.97 4.00
6363 6448 5.163311 TGTGATATCATTACTGGTGTCAGGG 60.163 44.000 9.02 0.00 44.99 4.45
6438 6523 5.182001 GCTCTTCTGTTGACAATGGTAATGT 59.818 40.000 0.00 0.00 0.00 2.71
6530 6615 3.153919 TGAAAATACTGGCTGTTGGGAC 58.846 45.455 1.31 0.00 0.00 4.46
6566 6651 4.996122 CCTGAAGACAATGAGATGATAGCC 59.004 45.833 0.00 0.00 0.00 3.93
6698 6789 3.004734 GTCTCACCTTTGTTCCCATGTTG 59.995 47.826 0.00 0.00 0.00 3.33
6714 6805 4.082408 CCATGTTGCTTCATGATTGTCTGT 60.082 41.667 18.30 0.00 45.41 3.41
7001 7718 9.683069 GCTATAATTGGAAATGTGTTCCTTATG 57.317 33.333 6.67 1.74 39.31 1.90
7020 7737 6.694411 CCTTATGCAATAACAGCTCAAATGTC 59.306 38.462 0.00 0.00 32.95 3.06
7042 7815 8.736097 TGTCTGGGTGATTAGTATATACCATT 57.264 34.615 9.32 0.00 33.10 3.16
7362 8473 8.184249 AGATAGTAGGGATTATGGACCATTACA 58.816 37.037 13.40 0.00 0.00 2.41
7608 9182 9.581099 TTTTTAGCTTAGGAAAGTTTTGTGAAG 57.419 29.630 0.00 0.00 34.99 3.02
7625 9199 6.801539 TGTGAAGTCATATCAGTGTTTTCC 57.198 37.500 0.00 0.00 0.00 3.13
7648 9222 4.435425 TGTAAATGTTATTCCCTCGACGG 58.565 43.478 0.00 0.00 0.00 4.79
7692 9278 5.844004 AGTGTTAGTGTGTCTTCCTTACTG 58.156 41.667 0.00 0.00 0.00 2.74
7747 9333 2.595655 GGCCAACCTAGCCCGATT 59.404 61.111 0.00 0.00 45.16 3.34
7779 9365 9.372369 GATCACATAGCTTACTCAAACTTTAGT 57.628 33.333 0.00 0.00 0.00 2.24
7940 9551 7.251704 AGATATTTGTGGATTAAAGCTGTCG 57.748 36.000 0.00 0.00 0.00 4.35
7947 9558 4.933400 GTGGATTAAAGCTGTCGTCCTTTA 59.067 41.667 8.51 0.00 33.64 1.85
8082 10086 2.101783 TGGCCATGACCTTTTATGCAG 58.898 47.619 0.00 0.00 0.00 4.41
8224 10231 0.178953 ATGGGCCTGACTGCAAAAGT 60.179 50.000 4.53 0.00 43.85 2.66
8309 10320 4.864969 AGATTCCTGTATCTCGGAAGCCG 61.865 52.174 0.00 0.00 44.55 5.52
8335 10346 6.166279 CAGTAAATTCTGAGTTGGAGCACTA 58.834 40.000 0.00 0.00 37.61 2.74
8401 10665 1.084289 ACAAGGATAAGAAACGCGGC 58.916 50.000 12.47 0.00 0.00 6.53
8489 10756 1.625315 TGATGCTGACCTGCACTAAGT 59.375 47.619 3.73 0.00 46.33 2.24
8573 10861 4.679373 TCTCCTCTTACATGAAGCATCC 57.321 45.455 0.00 0.00 34.87 3.51
8715 11010 2.440946 TGGTGTCACTAGCAGCAGT 58.559 52.632 2.35 0.00 39.10 4.40
8716 11011 0.758734 TGGTGTCACTAGCAGCAGTT 59.241 50.000 2.35 0.00 39.10 3.16
8720 11015 3.433615 GGTGTCACTAGCAGCAGTTAAAG 59.566 47.826 2.35 0.00 34.80 1.85
8721 11016 3.433615 GTGTCACTAGCAGCAGTTAAAGG 59.566 47.826 0.00 0.00 0.00 3.11
8722 11017 2.416893 GTCACTAGCAGCAGTTAAAGGC 59.583 50.000 0.00 0.00 0.00 4.35
8733 11028 0.095417 GTTAAAGGCGCTCGCTGAAG 59.905 55.000 7.64 0.00 41.60 3.02
8783 11113 2.789399 TCCTCCCCTTTCTTCAGGTTTT 59.211 45.455 0.00 0.00 30.96 2.43
8785 11115 3.436470 CCTCCCCTTTCTTCAGGTTTTGA 60.436 47.826 0.00 0.00 30.96 2.69
8886 11482 1.138247 GCACCGTACTACCACCGAG 59.862 63.158 0.00 0.00 0.00 4.63
8889 11485 1.138247 CCGTACTACCACCGAGCAC 59.862 63.158 0.00 0.00 0.00 4.40
8890 11486 1.588824 CCGTACTACCACCGAGCACA 61.589 60.000 0.00 0.00 0.00 4.57
8892 11488 1.731424 CGTACTACCACCGAGCACAAG 60.731 57.143 0.00 0.00 0.00 3.16
8893 11489 1.542915 GTACTACCACCGAGCACAAGA 59.457 52.381 0.00 0.00 0.00 3.02
8895 11491 0.737715 CTACCACCGAGCACAAGAGC 60.738 60.000 0.00 0.00 0.00 4.09
8945 11950 1.692749 TGGCTGGGTGGTATCCTCC 60.693 63.158 0.00 0.00 36.52 4.30
9021 12037 3.246112 CACCGGAACCAGGTCCCA 61.246 66.667 9.46 0.00 40.59 4.37
9022 12038 2.448931 ACCGGAACCAGGTCCCAA 60.449 61.111 9.46 0.00 37.44 4.12
9111 12145 4.347453 GCAAACCCAGCGGCACAG 62.347 66.667 1.45 0.00 0.00 3.66
9113 12147 2.192861 CAAACCCAGCGGCACAGAA 61.193 57.895 1.45 0.00 0.00 3.02
9114 12148 1.228552 AAACCCAGCGGCACAGAAT 60.229 52.632 1.45 0.00 0.00 2.40
9115 12149 1.244019 AAACCCAGCGGCACAGAATC 61.244 55.000 1.45 0.00 0.00 2.52
9116 12150 2.129555 AACCCAGCGGCACAGAATCT 62.130 55.000 1.45 0.00 0.00 2.40
9117 12151 2.110967 CCCAGCGGCACAGAATCTG 61.111 63.158 8.98 8.98 37.52 2.90
9120 12154 0.167470 CAGCGGCACAGAATCTGTTG 59.833 55.000 13.99 10.35 42.59 3.33
9134 12197 0.466124 CTGTTGGCCCCTAGTAGAGC 59.534 60.000 0.00 1.10 0.00 4.09
9256 12371 3.594603 AGAACAAGTAGGATGACACGG 57.405 47.619 0.00 0.00 0.00 4.94
9376 12500 0.940126 GATGCACTCGCTGGGTATTG 59.060 55.000 0.00 0.00 39.64 1.90
9462 12590 2.196925 CGATGGGGGTCTCTCTCGG 61.197 68.421 0.00 0.00 0.00 4.63
9488 12620 2.749621 GTTGTAGGATTCTTGGCCACAG 59.250 50.000 3.88 6.78 0.00 3.66
9544 12676 1.566703 AGCACTACCTGGAGCTCTCTA 59.433 52.381 14.64 0.00 30.05 2.43
9618 12767 4.634883 CACTCCATGGAATCTCACTCTTTG 59.365 45.833 17.00 1.42 0.00 2.77
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 5.012458 CACTCTAGATCAAATCCCCAGCATA 59.988 44.000 0.00 0.00 0.00 3.14
26 27 3.135348 CACTCTAGATCAAATCCCCAGCA 59.865 47.826 0.00 0.00 0.00 4.41
29 30 3.135348 CAGCACTCTAGATCAAATCCCCA 59.865 47.826 0.00 0.00 0.00 4.96
42 43 4.801624 CAGCGCCGCAGCACTCTA 62.802 66.667 13.36 0.00 39.83 2.43
145 146 2.661537 CCAACAGCGTGCGTCAGA 60.662 61.111 0.00 0.00 0.00 3.27
154 155 3.287312 ACAATCATCAAACCAACAGCG 57.713 42.857 0.00 0.00 0.00 5.18
162 163 5.332808 GCACAGCTGAAAACAATCATCAAAC 60.333 40.000 23.35 0.00 0.00 2.93
167 168 2.895404 AGGCACAGCTGAAAACAATCAT 59.105 40.909 23.35 0.00 0.00 2.45
180 181 2.357637 CAGTACTAGAGAGAGGCACAGC 59.642 54.545 0.00 0.00 0.00 4.40
243 252 2.769209 AGGATCATAGGCCAAGTCACT 58.231 47.619 5.01 0.00 0.00 3.41
256 265 3.458831 ACTGACCTCTCCAAAGGATCAT 58.541 45.455 0.00 0.00 38.87 2.45
277 286 3.734463 TGAACTACAGCGTCCAATTGAA 58.266 40.909 7.12 0.00 0.00 2.69
321 330 2.559668 CAGGACCAAACACAATGCTGAT 59.440 45.455 0.00 0.00 0.00 2.90
358 367 9.534565 GCACATAACTGAATCTAAGATTCTACA 57.465 33.333 0.00 0.00 0.00 2.74
398 410 3.152341 GAGCATTTTCGGATCATGGGAT 58.848 45.455 0.00 0.00 36.13 3.85
464 478 5.105106 TCCTTTTCACGAAGCTCCATACATA 60.105 40.000 0.00 0.00 0.00 2.29
465 479 3.941483 CCTTTTCACGAAGCTCCATACAT 59.059 43.478 0.00 0.00 0.00 2.29
466 480 3.007506 TCCTTTTCACGAAGCTCCATACA 59.992 43.478 0.00 0.00 0.00 2.29
467 481 3.596214 TCCTTTTCACGAAGCTCCATAC 58.404 45.455 0.00 0.00 0.00 2.39
518 532 2.668279 GCAACCAAGTAAACGCTCATGG 60.668 50.000 0.00 0.00 0.00 3.66
554 568 3.877508 CGGTAGAGAAAATGCCTAAAGGG 59.122 47.826 0.00 0.00 35.18 3.95
560 574 5.123979 GTCAAATTCGGTAGAGAAAATGCCT 59.876 40.000 0.00 0.00 33.43 4.75
570 584 5.758296 GCATATCCAAGTCAAATTCGGTAGA 59.242 40.000 0.00 0.00 0.00 2.59
575 589 4.536364 ACGCATATCCAAGTCAAATTCG 57.464 40.909 0.00 0.00 0.00 3.34
588 602 7.834068 ATATGATCAACAGGTAACGCATATC 57.166 36.000 0.00 0.00 46.39 1.63
622 636 4.016444 TGCTGGAGAAACAAGTTTGAAGT 58.984 39.130 2.45 0.00 32.11 3.01
624 638 3.761218 TGTGCTGGAGAAACAAGTTTGAA 59.239 39.130 2.45 0.00 32.11 2.69
625 639 3.351740 TGTGCTGGAGAAACAAGTTTGA 58.648 40.909 2.45 0.00 32.11 2.69
629 643 3.554934 TGAATGTGCTGGAGAAACAAGT 58.445 40.909 0.00 0.00 0.00 3.16
645 659 6.682423 TTGGATTGCACAGTACTATGAATG 57.318 37.500 5.04 0.00 0.00 2.67
650 664 6.658816 TGACAAATTGGATTGCACAGTACTAT 59.341 34.615 0.00 0.00 33.52 2.12
687 701 9.284968 GCTGCCCAAATTTAGATAGTTTCTATA 57.715 33.333 0.00 0.00 36.81 1.31
688 702 8.001292 AGCTGCCCAAATTTAGATAGTTTCTAT 58.999 33.333 0.00 0.00 36.81 1.98
690 704 6.096001 CAGCTGCCCAAATTTAGATAGTTTCT 59.904 38.462 0.00 0.00 38.57 2.52
693 707 5.264395 ACAGCTGCCCAAATTTAGATAGTT 58.736 37.500 15.27 0.00 0.00 2.24
694 708 4.860022 ACAGCTGCCCAAATTTAGATAGT 58.140 39.130 15.27 0.00 0.00 2.12
695 709 5.126061 ACAACAGCTGCCCAAATTTAGATAG 59.874 40.000 15.27 0.00 0.00 2.08
697 711 3.834231 ACAACAGCTGCCCAAATTTAGAT 59.166 39.130 15.27 0.00 0.00 1.98
699 713 3.005684 TCACAACAGCTGCCCAAATTTAG 59.994 43.478 15.27 0.00 0.00 1.85
700 714 2.961741 TCACAACAGCTGCCCAAATTTA 59.038 40.909 15.27 0.00 0.00 1.40
702 716 1.412079 TCACAACAGCTGCCCAAATT 58.588 45.000 15.27 0.00 0.00 1.82
703 717 1.274167 CATCACAACAGCTGCCCAAAT 59.726 47.619 15.27 0.00 0.00 2.32
704 718 0.675083 CATCACAACAGCTGCCCAAA 59.325 50.000 15.27 0.00 0.00 3.28
705 719 0.178995 TCATCACAACAGCTGCCCAA 60.179 50.000 15.27 0.00 0.00 4.12
706 720 0.607217 CTCATCACAACAGCTGCCCA 60.607 55.000 15.27 0.00 0.00 5.36
707 721 0.321919 TCTCATCACAACAGCTGCCC 60.322 55.000 15.27 0.00 0.00 5.36
708 722 1.747709 ATCTCATCACAACAGCTGCC 58.252 50.000 15.27 0.00 0.00 4.85
709 723 4.815308 AGATAATCTCATCACAACAGCTGC 59.185 41.667 15.27 0.00 0.00 5.25
710 724 6.922247 AAGATAATCTCATCACAACAGCTG 57.078 37.500 13.48 13.48 0.00 4.24
711 725 7.934855 AAAAGATAATCTCATCACAACAGCT 57.065 32.000 0.00 0.00 0.00 4.24
784 798 2.175499 AGAGAGAGGATCAGCAGCTACT 59.825 50.000 0.00 0.00 37.82 2.57
867 901 4.993029 ACTTCAAATTTCAACGTTCCCA 57.007 36.364 0.00 0.00 0.00 4.37
911 945 3.367743 ATGTGCTGTTGCCGGCTG 61.368 61.111 29.70 15.77 43.76 4.85
930 964 3.766545 ACTTTAGTCATTGTGCACCCAT 58.233 40.909 15.69 3.32 0.00 4.00
1059 1093 3.643237 CTTCTGGTCTACATCCCCTACA 58.357 50.000 0.00 0.00 0.00 2.74
1762 1799 3.144657 TGTTCAGTGCTCCATCATGTT 57.855 42.857 0.00 0.00 0.00 2.71
1816 1853 9.219603 CATCCTGTAAACAAGAAAGAGAATACA 57.780 33.333 0.00 0.00 0.00 2.29
1831 1868 2.159653 CGCAAGTCAGCATCCTGTAAAC 60.160 50.000 0.00 0.00 40.09 2.01
1934 1971 1.229428 TGAAGCAGAAAAGTCGGCAG 58.771 50.000 0.00 0.00 46.27 4.85
1935 1972 1.896220 ATGAAGCAGAAAAGTCGGCA 58.104 45.000 0.00 0.00 46.27 5.69
2079 2116 1.473434 GCCATAACCTCCCTCTTGACG 60.473 57.143 0.00 0.00 0.00 4.35
2325 2362 1.675641 CCAGAGCCAAGGGAAACGG 60.676 63.158 0.00 0.00 0.00 4.44
2392 2430 6.478344 CAGTTCTAGGCTTCTAGCTACAATTG 59.522 42.308 3.24 3.24 41.99 2.32
2431 2469 2.719739 CAGTGCCACTGGATGAAAGAT 58.280 47.619 17.22 0.00 42.35 2.40
2502 2540 8.161425 GCCTTGTATATAAAAATGGAGGGAGTA 58.839 37.037 0.00 0.00 0.00 2.59
2503 2541 7.004691 GCCTTGTATATAAAAATGGAGGGAGT 58.995 38.462 0.00 0.00 0.00 3.85
2504 2542 6.434340 GGCCTTGTATATAAAAATGGAGGGAG 59.566 42.308 0.00 0.00 0.00 4.30
2505 2543 6.126038 TGGCCTTGTATATAAAAATGGAGGGA 60.126 38.462 3.32 0.00 0.00 4.20
2506 2544 6.015434 GTGGCCTTGTATATAAAAATGGAGGG 60.015 42.308 3.32 0.00 0.00 4.30
2507 2545 6.777580 AGTGGCCTTGTATATAAAAATGGAGG 59.222 38.462 3.32 0.00 0.00 4.30
2508 2546 7.823745 AGTGGCCTTGTATATAAAAATGGAG 57.176 36.000 3.32 0.00 0.00 3.86
2509 2547 9.295825 CATAGTGGCCTTGTATATAAAAATGGA 57.704 33.333 3.32 0.00 0.00 3.41
2510 2548 8.522830 CCATAGTGGCCTTGTATATAAAAATGG 58.477 37.037 3.32 0.00 0.00 3.16
2511 2549 9.295825 TCCATAGTGGCCTTGTATATAAAAATG 57.704 33.333 3.32 0.00 37.47 2.32
2512 2550 9.875708 TTCCATAGTGGCCTTGTATATAAAAAT 57.124 29.630 3.32 0.00 37.47 1.82
2513 2551 9.875708 ATTCCATAGTGGCCTTGTATATAAAAA 57.124 29.630 3.32 0.00 37.47 1.94
2518 2556 9.279233 TGTATATTCCATAGTGGCCTTGTATAT 57.721 33.333 3.32 5.35 37.47 0.86
2519 2557 8.673456 TGTATATTCCATAGTGGCCTTGTATA 57.327 34.615 3.32 0.00 37.47 1.47
2520 2558 7.568128 TGTATATTCCATAGTGGCCTTGTAT 57.432 36.000 3.32 0.00 37.47 2.29
2521 2559 7.568128 ATGTATATTCCATAGTGGCCTTGTA 57.432 36.000 3.32 0.00 37.47 2.41
2522 2560 5.904984 TGTATATTCCATAGTGGCCTTGT 57.095 39.130 3.32 0.00 37.47 3.16
2523 2561 7.765695 AAATGTATATTCCATAGTGGCCTTG 57.234 36.000 3.32 0.00 37.47 3.61
2524 2562 7.255942 GCAAAATGTATATTCCATAGTGGCCTT 60.256 37.037 3.32 0.00 37.47 4.35
2525 2563 6.209391 GCAAAATGTATATTCCATAGTGGCCT 59.791 38.462 3.32 0.00 37.47 5.19
2526 2564 6.015519 TGCAAAATGTATATTCCATAGTGGCC 60.016 38.462 0.00 0.00 37.47 5.36
2527 2565 6.980593 TGCAAAATGTATATTCCATAGTGGC 58.019 36.000 0.00 0.00 37.47 5.01
2528 2566 9.017509 AGATGCAAAATGTATATTCCATAGTGG 57.982 33.333 0.00 0.00 39.43 4.00
2538 2576 8.960591 GGCCTTGTATAGATGCAAAATGTATAT 58.039 33.333 0.00 0.00 32.12 0.86
2539 2577 7.941790 TGGCCTTGTATAGATGCAAAATGTATA 59.058 33.333 3.32 0.00 32.12 1.47
2540 2578 6.777091 TGGCCTTGTATAGATGCAAAATGTAT 59.223 34.615 3.32 0.00 32.12 2.29
2541 2579 6.039270 GTGGCCTTGTATAGATGCAAAATGTA 59.961 38.462 3.32 0.00 32.12 2.29
2542 2580 4.955450 TGGCCTTGTATAGATGCAAAATGT 59.045 37.500 3.32 0.00 32.12 2.71
2543 2581 5.284079 GTGGCCTTGTATAGATGCAAAATG 58.716 41.667 3.32 0.00 32.12 2.32
2544 2582 4.342092 GGTGGCCTTGTATAGATGCAAAAT 59.658 41.667 3.32 0.00 32.12 1.82
2545 2583 3.699038 GGTGGCCTTGTATAGATGCAAAA 59.301 43.478 3.32 0.00 32.12 2.44
2546 2584 3.287222 GGTGGCCTTGTATAGATGCAAA 58.713 45.455 3.32 0.00 32.12 3.68
2547 2585 2.240921 TGGTGGCCTTGTATAGATGCAA 59.759 45.455 3.32 0.00 0.00 4.08
2548 2586 1.843206 TGGTGGCCTTGTATAGATGCA 59.157 47.619 3.32 0.00 0.00 3.96
2549 2587 2.618709 GTTGGTGGCCTTGTATAGATGC 59.381 50.000 3.32 0.00 0.00 3.91
2550 2588 3.879295 CTGTTGGTGGCCTTGTATAGATG 59.121 47.826 3.32 0.00 0.00 2.90
2551 2589 3.523564 ACTGTTGGTGGCCTTGTATAGAT 59.476 43.478 3.32 0.00 0.00 1.98
2552 2590 2.910319 ACTGTTGGTGGCCTTGTATAGA 59.090 45.455 3.32 0.00 0.00 1.98
2553 2591 3.350219 ACTGTTGGTGGCCTTGTATAG 57.650 47.619 3.32 0.00 0.00 1.31
2554 2592 4.912317 TTACTGTTGGTGGCCTTGTATA 57.088 40.909 3.32 0.00 0.00 1.47
2555 2593 3.799432 TTACTGTTGGTGGCCTTGTAT 57.201 42.857 3.32 0.00 0.00 2.29
2556 2594 3.681593 GATTACTGTTGGTGGCCTTGTA 58.318 45.455 3.32 0.00 0.00 2.41
2557 2595 2.514803 GATTACTGTTGGTGGCCTTGT 58.485 47.619 3.32 0.00 0.00 3.16
2558 2596 1.468520 CGATTACTGTTGGTGGCCTTG 59.531 52.381 3.32 0.00 0.00 3.61
2559 2597 1.349688 TCGATTACTGTTGGTGGCCTT 59.650 47.619 3.32 0.00 0.00 4.35
2560 2598 0.981183 TCGATTACTGTTGGTGGCCT 59.019 50.000 3.32 0.00 0.00 5.19
2561 2599 1.369625 CTCGATTACTGTTGGTGGCC 58.630 55.000 0.00 0.00 0.00 5.36
2562 2600 1.369625 CCTCGATTACTGTTGGTGGC 58.630 55.000 0.00 0.00 0.00 5.01
2563 2601 1.338674 TGCCTCGATTACTGTTGGTGG 60.339 52.381 0.00 0.00 0.00 4.61
2564 2602 2.093306 TGCCTCGATTACTGTTGGTG 57.907 50.000 0.00 0.00 0.00 4.17
2565 2603 2.851263 TTGCCTCGATTACTGTTGGT 57.149 45.000 0.00 0.00 0.00 3.67
2566 2604 4.701956 ATTTTGCCTCGATTACTGTTGG 57.298 40.909 0.00 0.00 0.00 3.77
2567 2605 7.967854 TCATTAATTTTGCCTCGATTACTGTTG 59.032 33.333 0.00 0.00 0.00 3.33
2568 2606 8.050778 TCATTAATTTTGCCTCGATTACTGTT 57.949 30.769 0.00 0.00 0.00 3.16
2569 2607 7.624360 TCATTAATTTTGCCTCGATTACTGT 57.376 32.000 0.00 0.00 0.00 3.55
2576 2614 9.950680 GAGAAAATATCATTAATTTTGCCTCGA 57.049 29.630 0.00 0.00 36.82 4.04
2577 2615 8.895845 CGAGAAAATATCATTAATTTTGCCTCG 58.104 33.333 13.28 13.28 40.38 4.63
2578 2616 9.736023 ACGAGAAAATATCATTAATTTTGCCTC 57.264 29.630 0.00 0.98 36.82 4.70
2602 2640 9.737025 GCAAGTATTAAACAAGTTCTTAGTACG 57.263 33.333 0.00 0.00 30.00 3.67
2606 2644 9.065871 GCATGCAAGTATTAAACAAGTTCTTAG 57.934 33.333 14.21 0.00 0.00 2.18
2607 2645 8.572185 TGCATGCAAGTATTAAACAAGTTCTTA 58.428 29.630 20.30 0.00 0.00 2.10
2608 2646 7.432869 TGCATGCAAGTATTAAACAAGTTCTT 58.567 30.769 20.30 0.00 0.00 2.52
2609 2647 6.980593 TGCATGCAAGTATTAAACAAGTTCT 58.019 32.000 20.30 0.00 0.00 3.01
2610 2648 7.669098 CATGCATGCAAGTATTAAACAAGTTC 58.331 34.615 26.68 0.00 0.00 3.01
2611 2649 7.585286 CATGCATGCAAGTATTAAACAAGTT 57.415 32.000 26.68 0.00 0.00 2.66
2628 2666 5.588240 ACTTTCATTATGACTGCATGCATG 58.412 37.500 22.97 22.70 35.94 4.06
2629 2667 5.847111 ACTTTCATTATGACTGCATGCAT 57.153 34.783 22.97 11.62 35.94 3.96
2630 2668 5.648178 AACTTTCATTATGACTGCATGCA 57.352 34.783 21.29 21.29 35.94 3.96
2631 2669 5.684626 GCTAACTTTCATTATGACTGCATGC 59.315 40.000 11.82 11.82 35.94 4.06
2632 2670 7.024340 AGCTAACTTTCATTATGACTGCATG 57.976 36.000 0.00 0.00 35.94 4.06
2633 2671 7.989741 AGTAGCTAACTTTCATTATGACTGCAT 59.010 33.333 0.00 0.00 33.35 3.96
2634 2672 7.331026 AGTAGCTAACTTTCATTATGACTGCA 58.669 34.615 0.00 0.00 33.35 4.41
2635 2673 7.778470 AGTAGCTAACTTTCATTATGACTGC 57.222 36.000 0.00 0.00 33.35 4.40
2649 2687 4.668636 ACTGAGTGGAGAAGTAGCTAACT 58.331 43.478 0.00 0.00 41.49 2.24
2650 2688 5.394224 AACTGAGTGGAGAAGTAGCTAAC 57.606 43.478 0.00 0.00 0.00 2.34
2651 2689 5.775701 AGAAACTGAGTGGAGAAGTAGCTAA 59.224 40.000 0.00 0.00 0.00 3.09
2652 2690 5.326069 AGAAACTGAGTGGAGAAGTAGCTA 58.674 41.667 0.00 0.00 0.00 3.32
2653 2691 4.156477 AGAAACTGAGTGGAGAAGTAGCT 58.844 43.478 0.00 0.00 0.00 3.32
2654 2692 4.529109 AGAAACTGAGTGGAGAAGTAGC 57.471 45.455 0.00 0.00 0.00 3.58
2655 2693 5.178438 GCAAAGAAACTGAGTGGAGAAGTAG 59.822 44.000 0.00 0.00 0.00 2.57
2656 2694 5.057149 GCAAAGAAACTGAGTGGAGAAGTA 58.943 41.667 0.00 0.00 0.00 2.24
2657 2695 3.879892 GCAAAGAAACTGAGTGGAGAAGT 59.120 43.478 0.00 0.00 0.00 3.01
2658 2696 3.879295 TGCAAAGAAACTGAGTGGAGAAG 59.121 43.478 0.00 0.00 0.00 2.85
2659 2697 3.884895 TGCAAAGAAACTGAGTGGAGAA 58.115 40.909 0.00 0.00 0.00 2.87
2660 2698 3.558931 TGCAAAGAAACTGAGTGGAGA 57.441 42.857 0.00 0.00 0.00 3.71
2661 2699 3.611057 GCATGCAAAGAAACTGAGTGGAG 60.611 47.826 14.21 0.00 0.00 3.86
2662 2700 2.294233 GCATGCAAAGAAACTGAGTGGA 59.706 45.455 14.21 0.00 0.00 4.02
2663 2701 2.034939 TGCATGCAAAGAAACTGAGTGG 59.965 45.455 20.30 0.00 0.00 4.00
2664 2702 3.358707 TGCATGCAAAGAAACTGAGTG 57.641 42.857 20.30 0.00 0.00 3.51
2665 2703 3.909430 CATGCATGCAAAGAAACTGAGT 58.091 40.909 26.68 0.00 0.00 3.41
2679 2717 5.448225 GGATCATTAATACTCCGCATGCATG 60.448 44.000 22.70 22.70 0.00 4.06
2680 2718 4.637534 GGATCATTAATACTCCGCATGCAT 59.362 41.667 19.57 0.00 0.00 3.96
2681 2719 4.002982 GGATCATTAATACTCCGCATGCA 58.997 43.478 19.57 0.00 0.00 3.96
2682 2720 3.375299 GGGATCATTAATACTCCGCATGC 59.625 47.826 7.91 7.91 0.00 4.06
2683 2721 4.578871 TGGGATCATTAATACTCCGCATG 58.421 43.478 0.00 0.00 0.00 4.06
2684 2722 4.287067 ACTGGGATCATTAATACTCCGCAT 59.713 41.667 0.00 0.00 0.00 4.73
2685 2723 3.646162 ACTGGGATCATTAATACTCCGCA 59.354 43.478 0.00 7.45 0.00 5.69
2686 2724 4.273148 ACTGGGATCATTAATACTCCGC 57.727 45.455 0.00 4.35 0.00 5.54
2687 2725 7.214381 TGTTTACTGGGATCATTAATACTCCG 58.786 38.462 0.00 1.34 0.00 4.63
2688 2726 8.974060 TTGTTTACTGGGATCATTAATACTCC 57.026 34.615 6.85 6.85 0.00 3.85
2689 2727 9.832445 TCTTGTTTACTGGGATCATTAATACTC 57.168 33.333 0.00 0.00 0.00 2.59
2693 2731 9.753674 TTCTTCTTGTTTACTGGGATCATTAAT 57.246 29.630 0.00 0.00 0.00 1.40
2694 2732 9.581289 TTTCTTCTTGTTTACTGGGATCATTAA 57.419 29.630 0.00 0.00 0.00 1.40
2695 2733 9.581289 TTTTCTTCTTGTTTACTGGGATCATTA 57.419 29.630 0.00 0.00 0.00 1.90
2696 2734 8.477419 TTTTCTTCTTGTTTACTGGGATCATT 57.523 30.769 0.00 0.00 0.00 2.57
2697 2735 8.655935 ATTTTCTTCTTGTTTACTGGGATCAT 57.344 30.769 0.00 0.00 0.00 2.45
2698 2736 7.944554 AGATTTTCTTCTTGTTTACTGGGATCA 59.055 33.333 0.00 0.00 0.00 2.92
2699 2737 8.239998 CAGATTTTCTTCTTGTTTACTGGGATC 58.760 37.037 0.00 0.00 0.00 3.36
2700 2738 7.944554 TCAGATTTTCTTCTTGTTTACTGGGAT 59.055 33.333 0.00 0.00 0.00 3.85
2701 2739 7.228706 GTCAGATTTTCTTCTTGTTTACTGGGA 59.771 37.037 0.00 0.00 0.00 4.37
2702 2740 7.229506 AGTCAGATTTTCTTCTTGTTTACTGGG 59.770 37.037 0.00 0.00 0.00 4.45
2703 2741 8.159344 AGTCAGATTTTCTTCTTGTTTACTGG 57.841 34.615 0.00 0.00 0.00 4.00
2704 2742 9.443283 CAAGTCAGATTTTCTTCTTGTTTACTG 57.557 33.333 0.00 0.00 34.31 2.74
2705 2743 9.178758 ACAAGTCAGATTTTCTTCTTGTTTACT 57.821 29.630 14.02 0.00 41.67 2.24
2737 2775 9.598517 CAGGTACCAATGTAAAATTTAATGCAT 57.401 29.630 15.94 0.00 0.00 3.96
2738 2776 8.589338 ACAGGTACCAATGTAAAATTTAATGCA 58.411 29.630 15.94 0.00 0.00 3.96
2739 2777 8.996024 ACAGGTACCAATGTAAAATTTAATGC 57.004 30.769 15.94 0.00 0.00 3.56
2744 2782 8.463607 CGGATTACAGGTACCAATGTAAAATTT 58.536 33.333 23.26 11.99 43.14 1.82
2745 2783 7.830201 TCGGATTACAGGTACCAATGTAAAATT 59.170 33.333 23.26 12.26 43.14 1.82
2746 2784 7.340256 TCGGATTACAGGTACCAATGTAAAAT 58.660 34.615 23.26 13.59 43.14 1.82
2747 2785 6.709281 TCGGATTACAGGTACCAATGTAAAA 58.291 36.000 23.26 10.18 43.14 1.52
2748 2786 6.070653 ACTCGGATTACAGGTACCAATGTAAA 60.071 38.462 23.26 11.26 43.14 2.01
2749 2787 5.422970 ACTCGGATTACAGGTACCAATGTAA 59.577 40.000 22.24 22.24 43.80 2.41
2750 2788 4.957954 ACTCGGATTACAGGTACCAATGTA 59.042 41.667 15.94 12.15 0.00 2.29
2751 2789 3.773119 ACTCGGATTACAGGTACCAATGT 59.227 43.478 15.94 13.23 0.00 2.71
2752 2790 4.402056 ACTCGGATTACAGGTACCAATG 57.598 45.455 15.94 7.18 0.00 2.82
2753 2791 5.183228 CAAACTCGGATTACAGGTACCAAT 58.817 41.667 15.94 5.06 0.00 3.16
2754 2792 4.040706 ACAAACTCGGATTACAGGTACCAA 59.959 41.667 15.94 0.00 0.00 3.67
2755 2793 3.579586 ACAAACTCGGATTACAGGTACCA 59.420 43.478 15.94 0.00 0.00 3.25
2756 2794 3.930848 CACAAACTCGGATTACAGGTACC 59.069 47.826 2.73 2.73 0.00 3.34
2757 2795 3.930848 CCACAAACTCGGATTACAGGTAC 59.069 47.826 0.00 0.00 0.00 3.34
2758 2796 3.618019 GCCACAAACTCGGATTACAGGTA 60.618 47.826 0.00 0.00 0.00 3.08
2759 2797 2.874457 GCCACAAACTCGGATTACAGGT 60.874 50.000 0.00 0.00 0.00 4.00
2760 2798 1.737793 GCCACAAACTCGGATTACAGG 59.262 52.381 0.00 0.00 0.00 4.00
2761 2799 1.737793 GGCCACAAACTCGGATTACAG 59.262 52.381 0.00 0.00 0.00 2.74
2762 2800 1.349688 AGGCCACAAACTCGGATTACA 59.650 47.619 5.01 0.00 0.00 2.41
2763 2801 2.109425 AGGCCACAAACTCGGATTAC 57.891 50.000 5.01 0.00 0.00 1.89
2764 2802 2.871096 AAGGCCACAAACTCGGATTA 57.129 45.000 5.01 0.00 0.00 1.75
2765 2803 1.995376 AAAGGCCACAAACTCGGATT 58.005 45.000 5.01 0.00 0.00 3.01
2766 2804 1.995376 AAAAGGCCACAAACTCGGAT 58.005 45.000 5.01 0.00 0.00 4.18
2767 2805 2.642154 TAAAAGGCCACAAACTCGGA 57.358 45.000 5.01 0.00 0.00 4.55
2768 2806 6.687081 TTATATAAAAGGCCACAAACTCGG 57.313 37.500 5.01 0.00 0.00 4.63
2769 2807 8.973835 TTTTTATATAAAAGGCCACAAACTCG 57.026 30.769 17.71 0.00 36.62 4.18
2771 2809 9.665719 CCATTTTTATATAAAAGGCCACAAACT 57.334 29.630 17.71 0.00 36.62 2.66
2772 2810 9.660180 TCCATTTTTATATAAAAGGCCACAAAC 57.340 29.630 17.71 0.00 36.62 2.93
2773 2811 9.883142 CTCCATTTTTATATAAAAGGCCACAAA 57.117 29.630 17.71 4.48 36.62 2.83
2774 2812 8.482128 CCTCCATTTTTATATAAAAGGCCACAA 58.518 33.333 17.71 5.09 36.62 3.33
2775 2813 7.070571 CCCTCCATTTTTATATAAAAGGCCACA 59.929 37.037 17.71 5.70 36.62 4.17
2776 2814 7.289084 TCCCTCCATTTTTATATAAAAGGCCAC 59.711 37.037 17.71 0.00 36.62 5.01
2777 2815 7.366226 TCCCTCCATTTTTATATAAAAGGCCA 58.634 34.615 17.71 6.63 36.62 5.36
2778 2816 7.509318 ACTCCCTCCATTTTTATATAAAAGGCC 59.491 37.037 17.71 0.00 36.62 5.19
2779 2817 8.478775 ACTCCCTCCATTTTTATATAAAAGGC 57.521 34.615 17.71 0.00 36.62 4.35
2785 2823 9.528489 GCCAATTACTCCCTCCATTTTTATATA 57.472 33.333 0.00 0.00 0.00 0.86
2786 2824 8.010105 TGCCAATTACTCCCTCCATTTTTATAT 58.990 33.333 0.00 0.00 0.00 0.86
2787 2825 7.358263 TGCCAATTACTCCCTCCATTTTTATA 58.642 34.615 0.00 0.00 0.00 0.98
2788 2826 6.201591 TGCCAATTACTCCCTCCATTTTTAT 58.798 36.000 0.00 0.00 0.00 1.40
2789 2827 5.584913 TGCCAATTACTCCCTCCATTTTTA 58.415 37.500 0.00 0.00 0.00 1.52
2790 2828 4.424842 TGCCAATTACTCCCTCCATTTTT 58.575 39.130 0.00 0.00 0.00 1.94
2791 2829 4.059773 TGCCAATTACTCCCTCCATTTT 57.940 40.909 0.00 0.00 0.00 1.82
2792 2830 3.756082 TGCCAATTACTCCCTCCATTT 57.244 42.857 0.00 0.00 0.00 2.32
2793 2831 3.979501 ATGCCAATTACTCCCTCCATT 57.020 42.857 0.00 0.00 0.00 3.16
2794 2832 3.979501 AATGCCAATTACTCCCTCCAT 57.020 42.857 0.00 0.00 0.00 3.41
2795 2833 3.269381 AGAAATGCCAATTACTCCCTCCA 59.731 43.478 0.00 0.00 0.00 3.86
2796 2834 3.903467 AGAAATGCCAATTACTCCCTCC 58.097 45.455 0.00 0.00 0.00 4.30
2797 2835 5.299531 GGTAAGAAATGCCAATTACTCCCTC 59.700 44.000 0.00 0.00 33.24 4.30
2798 2836 5.201243 GGTAAGAAATGCCAATTACTCCCT 58.799 41.667 0.00 0.00 33.24 4.20
2799 2837 4.953579 TGGTAAGAAATGCCAATTACTCCC 59.046 41.667 0.00 0.00 41.29 4.30
2800 2838 5.652452 ACTGGTAAGAAATGCCAATTACTCC 59.348 40.000 0.00 0.00 43.83 3.85
2801 2839 6.404734 CCACTGGTAAGAAATGCCAATTACTC 60.405 42.308 0.00 0.00 43.83 2.59
2802 2840 5.418840 CCACTGGTAAGAAATGCCAATTACT 59.581 40.000 0.00 0.00 43.83 2.24
2803 2841 5.185056 ACCACTGGTAAGAAATGCCAATTAC 59.815 40.000 0.00 0.00 43.83 1.89
2810 2848 3.575965 CCAACCACTGGTAAGAAATGC 57.424 47.619 0.00 0.00 40.78 3.56
2828 2866 5.711506 CCTAGCCATGAAATATAACATGCCA 59.288 40.000 13.31 0.00 41.43 4.92
2903 2941 4.574674 ATGCAATCCTCACAAGAAGGTA 57.425 40.909 0.00 0.00 0.00 3.08
3014 3052 4.725790 AAGTGCAAATAATCAGAAGGGC 57.274 40.909 0.00 0.00 0.00 5.19
3032 3070 5.382664 TCTCCCTTGTTTTGACCTAAAGT 57.617 39.130 0.00 0.00 0.00 2.66
3215 3255 2.484264 AGTTTCCTCTGCAACGTTATGC 59.516 45.455 0.00 2.12 46.58 3.14
3217 3257 5.730550 TCATAGTTTCCTCTGCAACGTTAT 58.269 37.500 0.00 0.00 0.00 1.89
3568 3645 6.135454 ACTATCTTCACTGAGGAGATGTCAT 58.865 40.000 6.19 0.00 0.00 3.06
3575 3652 7.382110 TCTCAAAAACTATCTTCACTGAGGAG 58.618 38.462 0.00 0.00 31.92 3.69
3580 3657 8.295288 AGCAAATCTCAAAAACTATCTTCACTG 58.705 33.333 0.00 0.00 0.00 3.66
3687 3765 6.593978 CAGAAACAACCTACTTCAGATTTCG 58.406 40.000 0.00 0.00 31.63 3.46
3910 3988 1.904865 TCCGGTACAGGTTGACGCT 60.905 57.895 12.04 0.00 0.00 5.07
3911 3989 1.735559 GTCCGGTACAGGTTGACGC 60.736 63.158 12.04 0.00 0.00 5.19
3944 4022 5.935945 TCAGTCTTCACCCTTAACAAATCA 58.064 37.500 0.00 0.00 0.00 2.57
3948 4026 6.040391 CCAAATTCAGTCTTCACCCTTAACAA 59.960 38.462 0.00 0.00 0.00 2.83
4066 4144 8.884124 AATCCCAAAATTGACAAAGATCTCTA 57.116 30.769 0.00 0.00 0.00 2.43
4331 4409 3.631686 TGTAAACTTCACTGCATTGCTGT 59.368 39.130 14.61 14.61 41.16 4.40
4406 4484 7.716799 AGTTGCCCATTTTCTATTTCACATA 57.283 32.000 0.00 0.00 0.00 2.29
4435 4513 0.747283 CTTGCAGGATGGGCTCTCAC 60.747 60.000 0.00 0.00 35.86 3.51
4682 4760 9.359653 CAGAGATTATATGTTTCCCCTTGAAAT 57.640 33.333 0.00 0.00 44.44 2.17
4711 4789 7.257722 TCATGAGAAAAGGAGACAAAACAAAC 58.742 34.615 0.00 0.00 0.00 2.93
4720 4798 7.678947 TGAAAGAATCATGAGAAAAGGAGAC 57.321 36.000 0.09 0.00 31.50 3.36
4780 4858 4.640201 GGCTTGCATATACCTCTTGAACAA 59.360 41.667 0.00 0.00 0.00 2.83
4840 4918 2.751436 GCAGATCGCAAGGCCCAA 60.751 61.111 0.00 0.00 41.79 4.12
5412 5493 5.185828 GGGCACACTTTCCAGAATTATCTTT 59.814 40.000 0.00 0.00 32.03 2.52
5555 5636 1.541588 GCCCCTGAAACTGATGTTGTC 59.458 52.381 0.00 0.00 36.39 3.18
5592 5673 0.893447 AGAGCTTTGCATGCTTTCCC 59.107 50.000 20.33 3.63 41.30 3.97
5759 5840 0.321564 CACGGATTGCTTCCAGTCCA 60.322 55.000 6.14 0.00 45.43 4.02
5787 5868 7.269522 TCAGGATAATATCATATTGGTGGCA 57.730 36.000 0.00 0.00 0.00 4.92
5849 5931 5.181245 TGAGAAACCAAACTAATGCTAGCAC 59.819 40.000 22.07 1.96 0.00 4.40
6119 6203 7.284034 AGCCAACTCAATCAATTATTGGAGTAG 59.716 37.037 13.05 10.07 44.42 2.57
6155 6240 4.474226 CTTGGAACACACTAGAACAAGC 57.526 45.455 0.00 0.00 39.29 4.01
6216 6301 6.789959 ACTAATGATATAGGAAGCAAGGAGGT 59.210 38.462 0.00 0.00 0.00 3.85
6237 6322 2.234896 TACCGGACCATGGTGACTAA 57.765 50.000 25.52 1.43 40.73 2.24
6356 6441 0.991146 TTCATAAGGCTGCCCTGACA 59.009 50.000 16.57 5.00 41.90 3.58
6363 6448 2.819608 TCACTTGGTTTCATAAGGCTGC 59.180 45.455 0.00 0.00 0.00 5.25
6398 6483 2.953020 AGAGCAGAAGAAACGCTACTG 58.047 47.619 0.00 0.00 35.75 2.74
6399 6484 3.257127 AGAAGAGCAGAAGAAACGCTACT 59.743 43.478 0.00 0.00 35.75 2.57
6438 6523 4.816385 GTGAACATCCTGTCAAGAAAGTGA 59.184 41.667 0.00 0.00 0.00 3.41
6530 6615 2.413453 GTCTTCAGGCTTTACAGAAGCG 59.587 50.000 6.65 0.00 43.89 4.68
6698 6789 5.978919 TCACAAAAACAGACAATCATGAAGC 59.021 36.000 0.00 0.00 0.00 3.86
6714 6805 7.376615 TGCACATGAATGTATGATCACAAAAA 58.623 30.769 0.00 0.00 39.39 1.94
6755 6847 1.886886 TTTTTCTCCACTACGCACCC 58.113 50.000 0.00 0.00 0.00 4.61
6792 6886 5.693104 TGAGCACTCAAAGCATTGAAATTTC 59.307 36.000 11.41 11.41 44.64 2.17
7001 7718 4.418392 CCAGACATTTGAGCTGTTATTGC 58.582 43.478 0.00 0.00 0.00 3.56
7020 7737 9.231297 CCAAAATGGTATATACTAATCACCCAG 57.769 37.037 12.54 0.00 31.35 4.45
7042 7815 5.362717 GGAGAGGAAAAAGAAAAGGACCAAA 59.637 40.000 0.00 0.00 0.00 3.28
7341 8452 9.449719 CTTAATGTAATGGTCCATAATCCCTAC 57.550 37.037 4.33 3.61 0.00 3.18
7608 9182 8.730680 ACATTTACAGGAAAACACTGATATGAC 58.269 33.333 0.00 0.00 39.24 3.06
7625 9199 4.506654 CCGTCGAGGGAATAACATTTACAG 59.493 45.833 19.44 0.00 35.97 2.74
7692 9278 1.067213 GCTCTCTGTCTGTCTCCCAAC 60.067 57.143 0.00 0.00 0.00 3.77
7779 9365 7.567458 TCATGTCTCATACAATCAATGAGGAA 58.433 34.615 11.92 3.19 46.81 3.36
7940 9551 6.310711 CAGAATAAGTTCCACGTCTAAAGGAC 59.689 42.308 0.00 0.00 37.03 3.85
7947 9558 9.915629 GATATTATCAGAATAAGTTCCACGTCT 57.084 33.333 0.00 0.00 34.81 4.18
8117 10121 9.654417 GACACGATCTCTAGAATAAGAACTTAC 57.346 37.037 0.00 0.00 0.00 2.34
8305 10312 1.279271 ACTCAGAATTTACTGCCGGCT 59.721 47.619 29.70 11.31 37.75 5.52
8309 10320 3.127721 GCTCCAACTCAGAATTTACTGCC 59.872 47.826 0.00 0.00 37.75 4.85
8489 10756 4.226620 GGAAGGGGAATAAGTAACACTGGA 59.773 45.833 0.00 0.00 0.00 3.86
8667 10960 1.645997 GAGCAGGAATAAGCAGCGC 59.354 57.895 0.00 0.00 0.00 5.92
8715 11010 1.019278 CCTTCAGCGAGCGCCTTTAA 61.019 55.000 11.66 0.49 43.17 1.52
8716 11011 1.447838 CCTTCAGCGAGCGCCTTTA 60.448 57.895 11.66 0.00 43.17 1.85
8722 11017 4.821589 GGTCCCCTTCAGCGAGCG 62.822 72.222 0.00 0.00 0.00 5.03
8733 11028 0.324645 ATGGCATTTGTCAGGTCCCC 60.325 55.000 0.00 0.00 30.80 4.81
8783 11113 2.425683 CCCAGGAAAAACCCCTTTCTCA 60.426 50.000 0.00 0.00 40.05 3.27
8785 11115 1.863581 TCCCAGGAAAAACCCCTTTCT 59.136 47.619 0.00 0.00 40.05 2.52
8886 11482 1.881973 TCCATTCAACTGCTCTTGTGC 59.118 47.619 0.00 0.00 0.00 4.57
8889 11485 7.330900 AGAAATATCCATTCAACTGCTCTTG 57.669 36.000 0.00 0.00 0.00 3.02
8890 11486 7.613022 TGAAGAAATATCCATTCAACTGCTCTT 59.387 33.333 0.00 0.00 0.00 2.85
8892 11488 7.325660 TGAAGAAATATCCATTCAACTGCTC 57.674 36.000 0.00 0.00 0.00 4.26
8893 11489 6.320672 CCTGAAGAAATATCCATTCAACTGCT 59.679 38.462 0.00 0.00 31.70 4.24
8895 11491 6.320672 AGCCTGAAGAAATATCCATTCAACTG 59.679 38.462 0.00 0.00 31.70 3.16
9021 12037 3.750130 CAGACTGTAGCAGATGCAAAGTT 59.250 43.478 7.68 0.00 45.16 2.66
9022 12038 3.332919 CAGACTGTAGCAGATGCAAAGT 58.667 45.455 7.68 7.13 45.16 2.66
9111 12145 3.039011 TCTACTAGGGGCCAACAGATTC 58.961 50.000 4.39 0.00 0.00 2.52
9113 12147 2.683768 CTCTACTAGGGGCCAACAGAT 58.316 52.381 4.39 0.00 0.00 2.90
9114 12148 1.965318 GCTCTACTAGGGGCCAACAGA 60.965 57.143 4.39 0.00 0.00 3.41
9115 12149 0.466124 GCTCTACTAGGGGCCAACAG 59.534 60.000 4.39 0.68 0.00 3.16
9116 12150 1.327690 CGCTCTACTAGGGGCCAACA 61.328 60.000 4.39 0.00 34.56 3.33
9117 12151 1.041447 TCGCTCTACTAGGGGCCAAC 61.041 60.000 4.39 0.00 38.66 3.77
9120 12154 1.920610 TTATCGCTCTACTAGGGGCC 58.079 55.000 0.00 0.00 38.66 5.80
9134 12197 1.636340 CGGCGGCTGAACTTTATCG 59.364 57.895 7.61 0.00 0.00 2.92
9275 12391 3.582120 CACACACACACGGCCACC 61.582 66.667 2.24 0.00 0.00 4.61
9282 12400 1.193203 CGATCTCAAGCACACACACAC 59.807 52.381 0.00 0.00 0.00 3.82
9283 12401 1.068434 TCGATCTCAAGCACACACACA 59.932 47.619 0.00 0.00 0.00 3.72
9284 12402 1.783284 TCGATCTCAAGCACACACAC 58.217 50.000 0.00 0.00 0.00 3.82
9285 12403 2.289010 ACATCGATCTCAAGCACACACA 60.289 45.455 0.00 0.00 0.00 3.72
9376 12500 2.432628 CCAGCGTGTCTCCGGAAC 60.433 66.667 5.23 7.72 0.00 3.62
9418 12542 3.199946 ACCATTCTCCATCGGTGTATGTT 59.800 43.478 0.00 0.00 0.00 2.71
9462 12590 3.378427 GGCCAAGAATCCTACAACATGAC 59.622 47.826 0.00 0.00 0.00 3.06
9488 12620 1.604593 ATGTCTGCCCCAGTTGTGC 60.605 57.895 0.00 0.00 32.61 4.57
9499 12631 2.351738 GCAGTAAACCCAACATGTCTGC 60.352 50.000 13.90 13.90 39.73 4.26
9500 12632 3.058016 CAGCAGTAAACCCAACATGTCTG 60.058 47.826 0.00 0.29 0.00 3.51
9570 12702 3.812609 GAGAGCATATCACTGTCGAGAGA 59.187 47.826 17.61 0.00 38.16 3.10
9618 12767 2.230266 ACTCTGCGAGGAGAGAAAGTTC 59.770 50.000 24.83 0.00 41.95 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.