Multiple sequence alignment - TraesCS7A01G497900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G497900 chr7A 100.000 2651 0 0 1 2651 688463695 688461045 0.000000e+00 4896.0
1 TraesCS7A01G497900 chr7A 83.362 1154 115 35 987 2133 688360434 688359351 0.000000e+00 996.0
2 TraesCS7A01G497900 chr7A 84.111 686 61 18 826 1488 688666089 688665429 1.040000e-173 619.0
3 TraesCS7A01G497900 chr7A 95.699 93 4 0 42 134 451586885 451586793 1.640000e-32 150.0
4 TraesCS7A01G497900 chr7B 90.448 1874 109 18 126 1938 672861791 672859927 0.000000e+00 2405.0
5 TraesCS7A01G497900 chr7B 82.675 1189 100 58 987 2152 672779991 672778886 0.000000e+00 957.0
6 TraesCS7A01G497900 chr7B 83.249 788 77 28 734 1488 673221797 673221032 0.000000e+00 673.0
7 TraesCS7A01G497900 chr7B 87.129 202 16 2 1984 2182 672859926 672859732 1.240000e-53 220.0
8 TraesCS7A01G497900 chr7B 97.143 35 1 0 1 35 672861831 672861797 2.850000e-05 60.2
9 TraesCS7A01G497900 chr7D 91.075 1423 77 16 565 1938 595587519 595586098 0.000000e+00 1879.0
10 TraesCS7A01G497900 chr7D 83.488 1187 124 32 987 2152 595514266 595513131 0.000000e+00 1040.0
11 TraesCS7A01G497900 chr7D 92.779 457 27 3 125 579 595591094 595590642 0.000000e+00 656.0
12 TraesCS7A01G497900 chr7D 82.035 796 83 28 1080 1831 595510196 595509417 8.060000e-175 623.0
13 TraesCS7A01G497900 chr7D 83.776 678 78 20 826 1488 595669193 595668533 4.850000e-172 614.0
14 TraesCS7A01G497900 chr7D 90.099 202 17 1 1984 2182 595586097 595585896 2.620000e-65 259.0
15 TraesCS7A01G497900 chr7D 81.481 162 23 5 293 451 595671665 595671508 2.770000e-25 126.0
16 TraesCS7A01G497900 chr7D 81.667 120 18 2 766 881 595514448 595514329 2.170000e-16 97.1
17 TraesCS7A01G497900 chr5B 95.192 104 3 2 35 137 669928503 669928401 2.110000e-36 163.0
18 TraesCS7A01G497900 chr5A 97.727 88 2 0 42 129 444563135 444563048 4.570000e-33 152.0
19 TraesCS7A01G497900 chr6B 94.845 97 3 2 31 126 718478674 718478769 1.640000e-32 150.0
20 TraesCS7A01G497900 chr6B 92.308 104 5 3 28 129 459601738 459601636 7.650000e-31 145.0
21 TraesCS7A01G497900 chr2A 96.629 89 3 0 42 130 516432488 516432400 5.910000e-32 148.0
22 TraesCS7A01G497900 chr1B 93.000 100 7 0 39 138 371456426 371456327 2.130000e-31 147.0
23 TraesCS7A01G497900 chr1A 96.552 87 3 0 41 127 514886274 514886360 7.650000e-31 145.0
24 TraesCS7A01G497900 chr3B 90.000 110 9 2 31 139 456070058 456069950 9.890000e-30 141.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G497900 chr7A 688461045 688463695 2650 True 4896.000000 4896 100.000000 1 2651 1 chr7A.!!$R3 2650
1 TraesCS7A01G497900 chr7A 688359351 688360434 1083 True 996.000000 996 83.362000 987 2133 1 chr7A.!!$R2 1146
2 TraesCS7A01G497900 chr7A 688665429 688666089 660 True 619.000000 619 84.111000 826 1488 1 chr7A.!!$R4 662
3 TraesCS7A01G497900 chr7B 672778886 672779991 1105 True 957.000000 957 82.675000 987 2152 1 chr7B.!!$R1 1165
4 TraesCS7A01G497900 chr7B 672859732 672861831 2099 True 895.066667 2405 91.573333 1 2182 3 chr7B.!!$R3 2181
5 TraesCS7A01G497900 chr7B 673221032 673221797 765 True 673.000000 673 83.249000 734 1488 1 chr7B.!!$R2 754
6 TraesCS7A01G497900 chr7D 595585896 595591094 5198 True 931.333333 1879 91.317667 125 2182 3 chr7D.!!$R2 2057
7 TraesCS7A01G497900 chr7D 595509417 595514448 5031 True 586.700000 1040 82.396667 766 2152 3 chr7D.!!$R1 1386
8 TraesCS7A01G497900 chr7D 595668533 595671665 3132 True 370.000000 614 82.628500 293 1488 2 chr7D.!!$R3 1195

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
599 3742 0.036306 ACACAGAAACCTTAGCCCGG 59.964 55.0 0.0 0.0 0.0 5.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2214 11501 0.035317 TGAGTGTCGGCTTGCTTCAT 59.965 50.0 0.0 0.0 0.0 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 7.508296 ACTTGATCCCTACGTAATATACCTTGT 59.492 37.037 0.00 0.00 0.00 3.16
102 103 9.601217 ACACTAAAATAATGATCTAAACGCTCT 57.399 29.630 0.00 0.00 0.00 4.09
117 118 9.669353 TCTAAACGCTCTTATATTAGTTTACGG 57.331 33.333 0.00 0.00 34.29 4.02
118 119 9.669353 CTAAACGCTCTTATATTAGTTTACGGA 57.331 33.333 0.00 0.00 34.29 4.69
119 120 8.571461 AAACGCTCTTATATTAGTTTACGGAG 57.429 34.615 0.00 0.00 31.14 4.63
120 121 6.675987 ACGCTCTTATATTAGTTTACGGAGG 58.324 40.000 0.00 0.00 0.00 4.30
121 122 6.091437 CGCTCTTATATTAGTTTACGGAGGG 58.909 44.000 0.00 0.00 0.00 4.30
122 123 6.072286 CGCTCTTATATTAGTTTACGGAGGGA 60.072 42.308 0.00 0.00 34.63 4.20
123 124 7.314393 GCTCTTATATTAGTTTACGGAGGGAG 58.686 42.308 0.00 0.00 0.00 4.30
189 190 7.217200 AGTCAGCTAAAAACATCACTTAGACA 58.783 34.615 0.00 0.00 0.00 3.41
282 283 3.117776 AGCAATAGCCAGATGTTGATCCA 60.118 43.478 0.00 0.00 43.56 3.41
379 382 6.763135 GTCAAATATGAACTAGCCTGTCATCA 59.237 38.462 0.00 0.00 37.30 3.07
411 415 3.981071 TGACATGGATCCTTCGAAACT 57.019 42.857 14.23 0.00 0.00 2.66
563 569 8.910351 AGCAATATAACTCCTTACTGATTTCC 57.090 34.615 0.00 0.00 0.00 3.13
585 3728 4.750098 CCTCACACCAACTAGTTAACACAG 59.250 45.833 8.04 7.01 0.00 3.66
598 3741 1.892209 AACACAGAAACCTTAGCCCG 58.108 50.000 0.00 0.00 0.00 6.13
599 3742 0.036306 ACACAGAAACCTTAGCCCGG 59.964 55.000 0.00 0.00 0.00 5.73
609 3752 2.845586 ACCTTAGCCCGGTGGTAAAATA 59.154 45.455 13.28 0.00 36.54 1.40
633 3876 5.812642 AGGAAACACACTTAATCATCGCTAG 59.187 40.000 0.00 0.00 0.00 3.42
635 3878 6.408858 AAACACACTTAATCATCGCTAGTG 57.591 37.500 0.00 0.00 41.42 2.74
643 3890 7.900352 CACTTAATCATCGCTAGTGTCTTTTTC 59.100 37.037 2.66 0.00 33.34 2.29
922 6066 2.598192 CCTTCAAACAACAACAAGCACG 59.402 45.455 0.00 0.00 0.00 5.34
989 6161 0.655733 ACGCCGTGAAAGTGAAACAG 59.344 50.000 0.00 0.00 41.43 3.16
1037 6214 4.379243 CTTCGCCGTGAGCCACCT 62.379 66.667 0.50 0.00 38.78 4.00
1038 6215 4.680237 TTCGCCGTGAGCCACCTG 62.680 66.667 0.50 0.00 38.78 4.00
1553 10734 2.125106 GAGCCACGTCCATGACCC 60.125 66.667 0.00 0.00 0.00 4.46
1832 11075 2.417933 CCAATCGAAGGTCTCTTTGCAG 59.582 50.000 0.00 0.00 34.99 4.41
1836 11079 1.447945 GAAGGTCTCTTTGCAGCCTC 58.552 55.000 0.00 0.00 32.52 4.70
1839 11082 1.143684 AGGTCTCTTTGCAGCCTCAAA 59.856 47.619 0.00 1.73 35.01 2.69
1875 11121 2.478031 GCATCATGCTCTGCTTCAGTTG 60.478 50.000 1.02 0.00 40.96 3.16
1881 11127 0.250640 CTCTGCTTCAGTTGCACCCT 60.251 55.000 0.00 0.00 36.37 4.34
1907 11153 0.031721 GAAACGGACGACACTCCACT 59.968 55.000 0.00 0.00 0.00 4.00
1938 11222 3.689649 CCCCATCTTTCGGAAACTTACAG 59.310 47.826 0.00 0.00 0.00 2.74
1939 11223 3.127030 CCCATCTTTCGGAAACTTACAGC 59.873 47.826 0.00 0.00 0.00 4.40
1940 11224 3.751175 CCATCTTTCGGAAACTTACAGCA 59.249 43.478 0.00 0.00 0.00 4.41
1941 11225 4.378459 CCATCTTTCGGAAACTTACAGCAC 60.378 45.833 0.00 0.00 0.00 4.40
1942 11226 3.135994 TCTTTCGGAAACTTACAGCACC 58.864 45.455 0.00 0.00 0.00 5.01
1943 11227 2.922740 TTCGGAAACTTACAGCACCT 57.077 45.000 0.00 0.00 0.00 4.00
1944 11228 2.922740 TCGGAAACTTACAGCACCTT 57.077 45.000 0.00 0.00 0.00 3.50
1945 11229 3.202829 TCGGAAACTTACAGCACCTTT 57.797 42.857 0.00 0.00 0.00 3.11
1946 11230 4.339872 TCGGAAACTTACAGCACCTTTA 57.660 40.909 0.00 0.00 0.00 1.85
1947 11231 4.706035 TCGGAAACTTACAGCACCTTTAA 58.294 39.130 0.00 0.00 0.00 1.52
1948 11232 4.753107 TCGGAAACTTACAGCACCTTTAAG 59.247 41.667 0.00 0.00 0.00 1.85
1949 11233 4.514066 CGGAAACTTACAGCACCTTTAAGT 59.486 41.667 0.00 0.00 37.60 2.24
1950 11234 5.008316 CGGAAACTTACAGCACCTTTAAGTT 59.992 40.000 9.53 9.53 44.29 2.66
1951 11235 6.206498 GGAAACTTACAGCACCTTTAAGTTG 58.794 40.000 13.96 0.00 42.52 3.16
1952 11236 5.767816 AACTTACAGCACCTTTAAGTTGG 57.232 39.130 12.96 0.00 42.02 3.77
1953 11237 5.043737 ACTTACAGCACCTTTAAGTTGGA 57.956 39.130 0.00 0.00 33.19 3.53
1954 11238 5.442391 ACTTACAGCACCTTTAAGTTGGAA 58.558 37.500 0.00 0.00 33.19 3.53
1955 11239 5.889289 ACTTACAGCACCTTTAAGTTGGAAA 59.111 36.000 0.00 0.00 33.19 3.13
1956 11240 6.378848 ACTTACAGCACCTTTAAGTTGGAAAA 59.621 34.615 0.00 0.00 33.19 2.29
1957 11241 5.262588 ACAGCACCTTTAAGTTGGAAAAG 57.737 39.130 0.00 0.00 33.41 2.27
1958 11242 4.953579 ACAGCACCTTTAAGTTGGAAAAGA 59.046 37.500 0.00 0.00 35.19 2.52
1959 11243 5.420739 ACAGCACCTTTAAGTTGGAAAAGAA 59.579 36.000 0.00 0.00 35.19 2.52
1960 11244 6.071051 ACAGCACCTTTAAGTTGGAAAAGAAA 60.071 34.615 0.00 0.00 35.19 2.52
1961 11245 6.986231 CAGCACCTTTAAGTTGGAAAAGAAAT 59.014 34.615 0.00 0.00 35.19 2.17
1962 11246 8.141268 CAGCACCTTTAAGTTGGAAAAGAAATA 58.859 33.333 0.00 0.00 35.19 1.40
1963 11247 8.141909 AGCACCTTTAAGTTGGAAAAGAAATAC 58.858 33.333 0.00 0.00 35.19 1.89
1964 11248 8.141909 GCACCTTTAAGTTGGAAAAGAAATACT 58.858 33.333 0.00 0.00 35.19 2.12
1965 11249 9.463443 CACCTTTAAGTTGGAAAAGAAATACTG 57.537 33.333 0.00 0.00 35.19 2.74
1966 11250 9.416284 ACCTTTAAGTTGGAAAAGAAATACTGA 57.584 29.630 0.00 0.00 35.19 3.41
1989 11273 9.378597 CTGAATGAATATTGATCACGATGAAAC 57.621 33.333 0.00 0.00 0.00 2.78
2030 11314 7.573843 GCCGGGAGACAAGAATAAATATTGATG 60.574 40.741 2.18 0.00 0.00 3.07
2106 11390 1.336240 GCAACAGGGTCAAGCAACATC 60.336 52.381 0.00 0.00 0.00 3.06
2144 11431 2.350511 TAGGCCCAGCAACTGCACAA 62.351 55.000 0.00 0.00 45.16 3.33
2174 11461 7.023171 TGATAAAAAGTTAAGCCTGGGTCTA 57.977 36.000 0.00 0.00 0.00 2.59
2176 11463 3.715638 AAAGTTAAGCCTGGGTCTACC 57.284 47.619 0.00 0.00 40.81 3.18
2182 11469 6.391351 AGTTAAGCCTGGGTCTACCTTATAT 58.609 40.000 0.00 0.00 41.11 0.86
2183 11470 7.541967 AGTTAAGCCTGGGTCTACCTTATATA 58.458 38.462 0.00 0.00 41.11 0.86
2184 11471 8.184932 AGTTAAGCCTGGGTCTACCTTATATAT 58.815 37.037 0.00 0.00 41.11 0.86
2185 11472 8.823794 GTTAAGCCTGGGTCTACCTTATATATT 58.176 37.037 0.00 0.00 41.11 1.28
2186 11473 7.497773 AAGCCTGGGTCTACCTTATATATTC 57.502 40.000 0.00 0.00 41.11 1.75
2187 11474 5.965091 AGCCTGGGTCTACCTTATATATTCC 59.035 44.000 0.00 0.00 41.11 3.01
2188 11475 5.724854 GCCTGGGTCTACCTTATATATTCCA 59.275 44.000 0.00 0.00 41.11 3.53
2189 11476 6.214819 GCCTGGGTCTACCTTATATATTCCAA 59.785 42.308 0.00 0.00 41.11 3.53
2190 11477 7.256908 GCCTGGGTCTACCTTATATATTCCAAA 60.257 40.741 0.00 0.00 41.11 3.28
2191 11478 8.665906 CCTGGGTCTACCTTATATATTCCAAAA 58.334 37.037 0.00 0.00 41.11 2.44
2208 11495 8.652810 ATTCCAAAATCTGTTCAAGAAACAAG 57.347 30.769 0.00 0.00 46.95 3.16
2209 11496 6.572519 TCCAAAATCTGTTCAAGAAACAAGG 58.427 36.000 0.00 0.00 46.95 3.61
2210 11497 5.234972 CCAAAATCTGTTCAAGAAACAAGGC 59.765 40.000 0.00 0.00 46.95 4.35
2211 11498 3.904136 ATCTGTTCAAGAAACAAGGCG 57.096 42.857 0.00 0.00 46.95 5.52
2212 11499 1.946768 TCTGTTCAAGAAACAAGGCGG 59.053 47.619 0.00 0.00 46.95 6.13
2213 11500 0.383949 TGTTCAAGAAACAAGGCGGC 59.616 50.000 0.00 0.00 44.83 6.53
2214 11501 0.383949 GTTCAAGAAACAAGGCGGCA 59.616 50.000 13.08 0.00 37.82 5.69
2215 11502 1.000274 GTTCAAGAAACAAGGCGGCAT 60.000 47.619 13.08 0.00 37.82 4.40
2216 11503 0.597568 TCAAGAAACAAGGCGGCATG 59.402 50.000 13.08 13.07 0.00 4.06
2217 11504 0.597568 CAAGAAACAAGGCGGCATGA 59.402 50.000 21.63 0.00 0.00 3.07
2218 11505 1.000385 CAAGAAACAAGGCGGCATGAA 60.000 47.619 21.63 0.00 0.00 2.57
2219 11506 0.883833 AGAAACAAGGCGGCATGAAG 59.116 50.000 21.63 2.94 0.00 3.02
2220 11507 0.733909 GAAACAAGGCGGCATGAAGC 60.734 55.000 21.63 5.31 44.65 3.86
2229 11516 3.266964 GCATGAAGCAAGCCGACA 58.733 55.556 0.00 0.00 44.79 4.35
2230 11517 1.154150 GCATGAAGCAAGCCGACAC 60.154 57.895 0.00 0.00 44.79 3.67
2231 11518 1.580845 GCATGAAGCAAGCCGACACT 61.581 55.000 0.00 0.00 44.79 3.55
2232 11519 0.445436 CATGAAGCAAGCCGACACTC 59.555 55.000 0.00 0.00 0.00 3.51
2233 11520 0.035317 ATGAAGCAAGCCGACACTCA 59.965 50.000 0.00 0.00 0.00 3.41
2234 11521 0.880278 TGAAGCAAGCCGACACTCAC 60.880 55.000 0.00 0.00 0.00 3.51
2235 11522 0.601311 GAAGCAAGCCGACACTCACT 60.601 55.000 0.00 0.00 0.00 3.41
2236 11523 0.882042 AAGCAAGCCGACACTCACTG 60.882 55.000 0.00 0.00 0.00 3.66
2237 11524 2.959357 GCAAGCCGACACTCACTGC 61.959 63.158 0.00 0.00 0.00 4.40
2238 11525 1.595109 CAAGCCGACACTCACTGCA 60.595 57.895 0.00 0.00 0.00 4.41
2239 11526 1.595382 AAGCCGACACTCACTGCAC 60.595 57.895 0.00 0.00 0.00 4.57
2240 11527 2.280119 GCCGACACTCACTGCACA 60.280 61.111 0.00 0.00 0.00 4.57
2241 11528 1.669115 GCCGACACTCACTGCACAT 60.669 57.895 0.00 0.00 0.00 3.21
2242 11529 1.904852 GCCGACACTCACTGCACATG 61.905 60.000 0.00 0.00 0.00 3.21
2243 11530 0.319813 CCGACACTCACTGCACATGA 60.320 55.000 0.00 0.00 0.00 3.07
2244 11531 0.786581 CGACACTCACTGCACATGAC 59.213 55.000 0.00 0.00 0.00 3.06
2245 11532 1.869342 CGACACTCACTGCACATGACA 60.869 52.381 0.00 0.00 0.00 3.58
2246 11533 1.797046 GACACTCACTGCACATGACAG 59.203 52.381 15.80 15.80 41.08 3.51
2248 11535 2.216046 CACTCACTGCACATGACAGTT 58.784 47.619 19.10 6.87 46.01 3.16
2249 11536 2.222678 CACTCACTGCACATGACAGTTC 59.777 50.000 19.10 0.00 46.01 3.01
2250 11537 1.802960 CTCACTGCACATGACAGTTCC 59.197 52.381 19.10 0.00 46.01 3.62
2251 11538 1.417517 TCACTGCACATGACAGTTCCT 59.582 47.619 19.10 0.94 46.01 3.36
2252 11539 2.158769 TCACTGCACATGACAGTTCCTT 60.159 45.455 19.10 0.63 46.01 3.36
2253 11540 2.225019 CACTGCACATGACAGTTCCTTC 59.775 50.000 19.10 0.00 46.01 3.46
2254 11541 1.808945 CTGCACATGACAGTTCCTTCC 59.191 52.381 0.00 0.00 0.00 3.46
2255 11542 0.798776 GCACATGACAGTTCCTTCCG 59.201 55.000 0.00 0.00 0.00 4.30
2256 11543 1.608025 GCACATGACAGTTCCTTCCGA 60.608 52.381 0.00 0.00 0.00 4.55
2257 11544 2.341257 CACATGACAGTTCCTTCCGAG 58.659 52.381 0.00 0.00 0.00 4.63
2258 11545 1.971357 ACATGACAGTTCCTTCCGAGT 59.029 47.619 0.00 0.00 0.00 4.18
2259 11546 3.056821 CACATGACAGTTCCTTCCGAGTA 60.057 47.826 0.00 0.00 0.00 2.59
2260 11547 3.576982 ACATGACAGTTCCTTCCGAGTAA 59.423 43.478 0.00 0.00 0.00 2.24
2261 11548 4.039973 ACATGACAGTTCCTTCCGAGTAAA 59.960 41.667 0.00 0.00 0.00 2.01
2262 11549 4.675976 TGACAGTTCCTTCCGAGTAAAA 57.324 40.909 0.00 0.00 0.00 1.52
2263 11550 5.223449 TGACAGTTCCTTCCGAGTAAAAT 57.777 39.130 0.00 0.00 0.00 1.82
2264 11551 6.349243 TGACAGTTCCTTCCGAGTAAAATA 57.651 37.500 0.00 0.00 0.00 1.40
2265 11552 6.395629 TGACAGTTCCTTCCGAGTAAAATAG 58.604 40.000 0.00 0.00 0.00 1.73
2266 11553 5.731591 ACAGTTCCTTCCGAGTAAAATAGG 58.268 41.667 0.00 0.00 0.00 2.57
2267 11554 4.571176 CAGTTCCTTCCGAGTAAAATAGGC 59.429 45.833 0.00 0.00 0.00 3.93
2268 11555 3.832615 TCCTTCCGAGTAAAATAGGCC 57.167 47.619 0.00 0.00 0.00 5.19
2269 11556 3.109151 TCCTTCCGAGTAAAATAGGCCA 58.891 45.455 5.01 0.00 0.00 5.36
2270 11557 3.714798 TCCTTCCGAGTAAAATAGGCCAT 59.285 43.478 5.01 0.00 0.00 4.40
2271 11558 4.165372 TCCTTCCGAGTAAAATAGGCCATT 59.835 41.667 5.01 0.00 0.00 3.16
2272 11559 5.367352 TCCTTCCGAGTAAAATAGGCCATTA 59.633 40.000 5.01 0.00 0.00 1.90
2273 11560 5.701290 CCTTCCGAGTAAAATAGGCCATTAG 59.299 44.000 5.01 0.00 0.00 1.73
2274 11561 5.223449 TCCGAGTAAAATAGGCCATTAGG 57.777 43.478 5.01 0.00 38.23 2.69
2289 11576 4.843728 CCATTAGGCCACTAACTCAAAGA 58.156 43.478 5.01 0.00 41.68 2.52
2290 11577 4.878397 CCATTAGGCCACTAACTCAAAGAG 59.122 45.833 5.01 0.00 41.68 2.85
2291 11578 5.338381 CCATTAGGCCACTAACTCAAAGAGA 60.338 44.000 5.01 0.00 41.68 3.10
2292 11579 6.352516 CATTAGGCCACTAACTCAAAGAGAT 58.647 40.000 5.01 0.00 41.68 2.75
2293 11580 4.917906 AGGCCACTAACTCAAAGAGATT 57.082 40.909 5.01 0.00 33.32 2.40
2294 11581 4.583871 AGGCCACTAACTCAAAGAGATTG 58.416 43.478 5.01 0.00 40.58 2.67
2295 11582 3.127721 GGCCACTAACTCAAAGAGATTGC 59.872 47.826 0.00 0.00 38.98 3.56
2296 11583 3.753272 GCCACTAACTCAAAGAGATTGCA 59.247 43.478 0.31 0.00 38.98 4.08
2297 11584 4.397417 GCCACTAACTCAAAGAGATTGCAT 59.603 41.667 0.31 0.00 38.98 3.96
2298 11585 5.675575 GCCACTAACTCAAAGAGATTGCATG 60.676 44.000 0.31 0.00 38.98 4.06
2299 11586 5.330295 CACTAACTCAAAGAGATTGCATGC 58.670 41.667 11.82 11.82 38.98 4.06
2300 11587 5.123502 CACTAACTCAAAGAGATTGCATGCT 59.876 40.000 20.33 0.00 38.98 3.79
2301 11588 5.709164 ACTAACTCAAAGAGATTGCATGCTT 59.291 36.000 20.33 6.31 38.98 3.91
2302 11589 5.464030 AACTCAAAGAGATTGCATGCTTT 57.536 34.783 20.33 6.89 38.98 3.51
2303 11590 6.579666 AACTCAAAGAGATTGCATGCTTTA 57.420 33.333 20.33 4.66 38.98 1.85
2304 11591 6.192234 ACTCAAAGAGATTGCATGCTTTAG 57.808 37.500 20.33 6.27 38.98 1.85
2305 11592 5.125097 ACTCAAAGAGATTGCATGCTTTAGG 59.875 40.000 20.33 8.10 38.98 2.69
2306 11593 4.110482 CAAAGAGATTGCATGCTTTAGGC 58.890 43.478 20.33 4.17 35.17 3.93
2307 11594 2.305009 AGAGATTGCATGCTTTAGGCC 58.695 47.619 20.33 0.00 40.92 5.19
2308 11595 2.026641 GAGATTGCATGCTTTAGGCCA 58.973 47.619 20.33 0.00 40.92 5.36
2309 11596 2.428171 GAGATTGCATGCTTTAGGCCAA 59.572 45.455 20.33 1.92 40.92 4.52
2310 11597 2.429610 AGATTGCATGCTTTAGGCCAAG 59.570 45.455 20.33 1.05 40.92 3.61
2311 11598 1.921982 TTGCATGCTTTAGGCCAAGA 58.078 45.000 20.33 0.00 40.92 3.02
2312 11599 1.921982 TGCATGCTTTAGGCCAAGAA 58.078 45.000 20.33 0.00 40.92 2.52
2313 11600 1.545582 TGCATGCTTTAGGCCAAGAAC 59.454 47.619 20.33 0.00 40.92 3.01
2314 11601 1.821136 GCATGCTTTAGGCCAAGAACT 59.179 47.619 11.37 0.00 40.92 3.01
2315 11602 2.159324 GCATGCTTTAGGCCAAGAACTC 60.159 50.000 11.37 0.00 40.92 3.01
2316 11603 1.808411 TGCTTTAGGCCAAGAACTCG 58.192 50.000 5.01 0.00 40.92 4.18
2317 11604 1.346395 TGCTTTAGGCCAAGAACTCGA 59.654 47.619 5.01 0.00 40.92 4.04
2318 11605 2.003301 GCTTTAGGCCAAGAACTCGAG 58.997 52.381 11.84 11.84 34.27 4.04
2319 11606 2.353803 GCTTTAGGCCAAGAACTCGAGA 60.354 50.000 21.68 0.00 34.27 4.04
2320 11607 3.864921 GCTTTAGGCCAAGAACTCGAGAA 60.865 47.826 21.68 0.00 34.27 2.87
2321 11608 3.594603 TTAGGCCAAGAACTCGAGAAG 57.405 47.619 21.68 3.50 0.00 2.85
2322 11609 1.343069 AGGCCAAGAACTCGAGAAGT 58.657 50.000 21.68 3.30 41.10 3.01
2323 11610 1.001406 AGGCCAAGAACTCGAGAAGTG 59.999 52.381 21.68 10.89 38.58 3.16
2324 11611 1.000955 GGCCAAGAACTCGAGAAGTGA 59.999 52.381 21.68 0.00 38.58 3.41
2325 11612 2.354203 GGCCAAGAACTCGAGAAGTGAT 60.354 50.000 21.68 0.00 38.58 3.06
2326 11613 2.926838 GCCAAGAACTCGAGAAGTGATC 59.073 50.000 21.68 7.15 38.58 2.92
2327 11614 3.175152 CCAAGAACTCGAGAAGTGATCG 58.825 50.000 21.68 0.00 38.58 3.69
2328 11615 3.119814 CCAAGAACTCGAGAAGTGATCGA 60.120 47.826 21.68 0.00 46.26 3.59
2339 11626 8.648557 TCGAGAAGTGATCGAATTTAATCAAT 57.351 30.769 5.54 2.71 45.52 2.57
2340 11627 9.744468 TCGAGAAGTGATCGAATTTAATCAATA 57.256 29.630 5.54 0.00 45.52 1.90
2408 11695 8.994429 ATGAAGCGATACTAGGATAAAGAATG 57.006 34.615 0.00 0.00 0.00 2.67
2409 11696 7.952671 TGAAGCGATACTAGGATAAAGAATGT 58.047 34.615 0.00 0.00 0.00 2.71
2410 11697 9.074576 TGAAGCGATACTAGGATAAAGAATGTA 57.925 33.333 0.00 0.00 0.00 2.29
2411 11698 9.909644 GAAGCGATACTAGGATAAAGAATGTAA 57.090 33.333 0.00 0.00 0.00 2.41
2412 11699 9.915629 AAGCGATACTAGGATAAAGAATGTAAG 57.084 33.333 0.00 0.00 0.00 2.34
2413 11700 9.080097 AGCGATACTAGGATAAAGAATGTAAGT 57.920 33.333 0.00 0.00 0.00 2.24
2414 11701 9.694137 GCGATACTAGGATAAAGAATGTAAGTT 57.306 33.333 0.00 0.00 0.00 2.66
2422 11709 9.793259 AGGATAAAGAATGTAAGTTGACAAGAA 57.207 29.630 0.00 0.00 31.83 2.52
2425 11712 7.881775 AAAGAATGTAAGTTGACAAGAAGGT 57.118 32.000 0.00 0.00 31.83 3.50
2426 11713 7.497925 AAGAATGTAAGTTGACAAGAAGGTC 57.502 36.000 0.00 0.00 38.29 3.85
2427 11714 6.831976 AGAATGTAAGTTGACAAGAAGGTCT 58.168 36.000 0.00 0.00 38.61 3.85
2428 11715 6.708054 AGAATGTAAGTTGACAAGAAGGTCTG 59.292 38.462 0.00 0.00 38.61 3.51
2429 11716 4.703897 TGTAAGTTGACAAGAAGGTCTGG 58.296 43.478 0.00 0.00 38.61 3.86
2430 11717 3.933861 AAGTTGACAAGAAGGTCTGGT 57.066 42.857 0.00 0.00 38.61 4.00
2431 11718 3.933861 AGTTGACAAGAAGGTCTGGTT 57.066 42.857 0.00 0.00 38.61 3.67
2432 11719 3.545703 AGTTGACAAGAAGGTCTGGTTG 58.454 45.455 0.00 0.00 38.61 3.77
2433 11720 2.618709 GTTGACAAGAAGGTCTGGTTGG 59.381 50.000 0.00 0.00 38.61 3.77
2434 11721 2.123589 TGACAAGAAGGTCTGGTTGGA 58.876 47.619 0.00 0.00 38.61 3.53
2435 11722 2.104792 TGACAAGAAGGTCTGGTTGGAG 59.895 50.000 0.00 0.00 38.61 3.86
2436 11723 2.104963 GACAAGAAGGTCTGGTTGGAGT 59.895 50.000 0.00 0.00 28.89 3.85
2437 11724 2.509964 ACAAGAAGGTCTGGTTGGAGTT 59.490 45.455 0.00 0.00 21.42 3.01
2438 11725 3.053619 ACAAGAAGGTCTGGTTGGAGTTT 60.054 43.478 0.00 0.00 21.42 2.66
2439 11726 4.165372 ACAAGAAGGTCTGGTTGGAGTTTA 59.835 41.667 0.00 0.00 21.42 2.01
2440 11727 5.130350 CAAGAAGGTCTGGTTGGAGTTTAA 58.870 41.667 0.00 0.00 0.00 1.52
2441 11728 5.584551 AGAAGGTCTGGTTGGAGTTTAAT 57.415 39.130 0.00 0.00 0.00 1.40
2442 11729 5.561679 AGAAGGTCTGGTTGGAGTTTAATC 58.438 41.667 0.00 0.00 0.00 1.75
2443 11730 4.993705 AGGTCTGGTTGGAGTTTAATCA 57.006 40.909 0.00 0.00 0.00 2.57
2444 11731 5.319043 AGGTCTGGTTGGAGTTTAATCAA 57.681 39.130 0.00 0.00 0.00 2.57
2445 11732 5.892348 AGGTCTGGTTGGAGTTTAATCAAT 58.108 37.500 0.00 0.00 0.00 2.57
2446 11733 6.314917 AGGTCTGGTTGGAGTTTAATCAATT 58.685 36.000 0.00 0.00 0.00 2.32
2447 11734 6.782494 AGGTCTGGTTGGAGTTTAATCAATTT 59.218 34.615 0.00 0.00 0.00 1.82
2448 11735 7.290014 AGGTCTGGTTGGAGTTTAATCAATTTT 59.710 33.333 0.00 0.00 0.00 1.82
2449 11736 7.931407 GGTCTGGTTGGAGTTTAATCAATTTTT 59.069 33.333 0.00 0.00 0.00 1.94
2450 11737 9.974980 GTCTGGTTGGAGTTTAATCAATTTTTA 57.025 29.630 0.00 0.00 0.00 1.52
2484 11771 8.879427 ATAAGTAATAATCCCCTAAATGTGCC 57.121 34.615 0.00 0.00 0.00 5.01
2485 11772 6.530601 AGTAATAATCCCCTAAATGTGCCT 57.469 37.500 0.00 0.00 0.00 4.75
2486 11773 7.642094 AGTAATAATCCCCTAAATGTGCCTA 57.358 36.000 0.00 0.00 0.00 3.93
2487 11774 7.690256 AGTAATAATCCCCTAAATGTGCCTAG 58.310 38.462 0.00 0.00 0.00 3.02
2488 11775 6.530601 AATAATCCCCTAAATGTGCCTAGT 57.469 37.500 0.00 0.00 0.00 2.57
2489 11776 4.881157 AATCCCCTAAATGTGCCTAGTT 57.119 40.909 0.00 0.00 0.00 2.24
2490 11777 3.926058 TCCCCTAAATGTGCCTAGTTC 57.074 47.619 0.00 0.00 0.00 3.01
2491 11778 3.186283 TCCCCTAAATGTGCCTAGTTCA 58.814 45.455 0.00 0.00 0.00 3.18
2492 11779 3.054655 TCCCCTAAATGTGCCTAGTTCAC 60.055 47.826 5.66 5.66 35.14 3.18
2493 11780 3.054361 CCCCTAAATGTGCCTAGTTCACT 60.054 47.826 11.94 0.00 35.58 3.41
2494 11781 4.567747 CCCCTAAATGTGCCTAGTTCACTT 60.568 45.833 11.94 4.99 35.58 3.16
2495 11782 4.396166 CCCTAAATGTGCCTAGTTCACTTG 59.604 45.833 11.94 0.00 35.58 3.16
2496 11783 4.396166 CCTAAATGTGCCTAGTTCACTTGG 59.604 45.833 11.94 3.29 40.99 3.61
2497 11784 3.508845 AATGTGCCTAGTTCACTTGGT 57.491 42.857 8.90 0.00 40.32 3.67
2498 11785 3.508845 ATGTGCCTAGTTCACTTGGTT 57.491 42.857 8.90 0.00 40.32 3.67
2499 11786 4.634012 ATGTGCCTAGTTCACTTGGTTA 57.366 40.909 8.90 0.00 40.32 2.85
2500 11787 4.425180 TGTGCCTAGTTCACTTGGTTAA 57.575 40.909 8.90 0.00 40.32 2.01
2501 11788 4.980573 TGTGCCTAGTTCACTTGGTTAAT 58.019 39.130 8.90 0.00 40.32 1.40
2502 11789 4.759693 TGTGCCTAGTTCACTTGGTTAATG 59.240 41.667 8.90 0.00 40.32 1.90
2503 11790 4.156008 GTGCCTAGTTCACTTGGTTAATGG 59.844 45.833 8.90 0.00 40.32 3.16
2504 11791 4.042311 TGCCTAGTTCACTTGGTTAATGGA 59.958 41.667 8.90 0.00 40.32 3.41
2505 11792 4.636206 GCCTAGTTCACTTGGTTAATGGAG 59.364 45.833 8.90 0.00 40.32 3.86
2506 11793 5.803470 GCCTAGTTCACTTGGTTAATGGAGT 60.803 44.000 8.90 0.00 40.32 3.85
2507 11794 5.643777 CCTAGTTCACTTGGTTAATGGAGTG 59.356 44.000 8.10 8.10 40.56 3.51
2508 11795 4.398319 AGTTCACTTGGTTAATGGAGTGG 58.602 43.478 12.29 0.11 39.85 4.00
2509 11796 4.104102 AGTTCACTTGGTTAATGGAGTGGA 59.896 41.667 12.29 4.41 39.85 4.02
2510 11797 4.927267 TCACTTGGTTAATGGAGTGGAT 57.073 40.909 12.29 0.00 39.85 3.41
2511 11798 4.588899 TCACTTGGTTAATGGAGTGGATG 58.411 43.478 12.29 0.00 39.85 3.51
2512 11799 4.042809 TCACTTGGTTAATGGAGTGGATGT 59.957 41.667 12.29 0.00 39.85 3.06
2513 11800 5.249622 TCACTTGGTTAATGGAGTGGATGTA 59.750 40.000 12.29 0.00 39.85 2.29
2514 11801 5.354234 CACTTGGTTAATGGAGTGGATGTAC 59.646 44.000 7.00 0.00 36.68 2.90
2515 11802 5.013704 ACTTGGTTAATGGAGTGGATGTACA 59.986 40.000 0.00 0.00 0.00 2.90
2516 11803 5.506730 TGGTTAATGGAGTGGATGTACAA 57.493 39.130 0.00 0.00 0.00 2.41
2517 11804 5.250200 TGGTTAATGGAGTGGATGTACAAC 58.750 41.667 0.00 0.00 0.00 3.32
2518 11805 4.638865 GGTTAATGGAGTGGATGTACAACC 59.361 45.833 14.97 14.97 0.00 3.77
2519 11806 5.250200 GTTAATGGAGTGGATGTACAACCA 58.750 41.667 20.06 20.06 35.19 3.67
2520 11807 4.380843 AATGGAGTGGATGTACAACCAA 57.619 40.909 24.81 11.17 37.94 3.67
2521 11808 3.417069 TGGAGTGGATGTACAACCAAG 57.583 47.619 24.81 0.00 37.94 3.61
2522 11809 2.708861 TGGAGTGGATGTACAACCAAGT 59.291 45.455 24.81 15.78 37.94 3.16
2523 11810 3.904965 TGGAGTGGATGTACAACCAAGTA 59.095 43.478 24.81 10.25 37.94 2.24
2524 11811 4.348461 TGGAGTGGATGTACAACCAAGTAA 59.652 41.667 24.81 9.98 37.94 2.24
2525 11812 5.013704 TGGAGTGGATGTACAACCAAGTAAT 59.986 40.000 24.81 9.94 37.94 1.89
2526 11813 5.944007 GGAGTGGATGTACAACCAAGTAATT 59.056 40.000 24.81 8.03 37.94 1.40
2527 11814 6.433093 GGAGTGGATGTACAACCAAGTAATTT 59.567 38.462 24.81 6.47 37.94 1.82
2528 11815 7.214467 AGTGGATGTACAACCAAGTAATTTG 57.786 36.000 24.81 0.00 37.94 2.32
2538 11825 3.592898 CAAGTAATTTGGGTCCAAGGC 57.407 47.619 2.48 0.00 37.24 4.35
2539 11826 2.231716 AGTAATTTGGGTCCAAGGCC 57.768 50.000 0.00 0.00 37.24 5.19
2540 11827 1.716503 AGTAATTTGGGTCCAAGGCCT 59.283 47.619 0.00 0.00 37.24 5.19
2541 11828 2.100197 GTAATTTGGGTCCAAGGCCTC 58.900 52.381 5.23 0.00 37.24 4.70
2542 11829 0.486879 AATTTGGGTCCAAGGCCTCA 59.513 50.000 5.23 0.00 37.24 3.86
2543 11830 0.251787 ATTTGGGTCCAAGGCCTCAC 60.252 55.000 5.23 2.87 37.24 3.51
2544 11831 1.650242 TTTGGGTCCAAGGCCTCACA 61.650 55.000 5.23 0.00 37.24 3.58
2545 11832 1.650242 TTGGGTCCAAGGCCTCACAA 61.650 55.000 5.23 3.74 0.00 3.33
2546 11833 1.152830 GGGTCCAAGGCCTCACAAA 59.847 57.895 5.23 0.00 0.00 2.83
2547 11834 0.469144 GGGTCCAAGGCCTCACAAAA 60.469 55.000 5.23 0.00 0.00 2.44
2548 11835 0.673985 GGTCCAAGGCCTCACAAAAC 59.326 55.000 5.23 0.00 0.00 2.43
2549 11836 0.310854 GTCCAAGGCCTCACAAAACG 59.689 55.000 5.23 0.00 0.00 3.60
2550 11837 1.007387 CCAAGGCCTCACAAAACGC 60.007 57.895 5.23 0.00 0.00 4.84
2551 11838 1.455383 CCAAGGCCTCACAAAACGCT 61.455 55.000 5.23 0.00 0.00 5.07
2552 11839 0.318107 CAAGGCCTCACAAAACGCTG 60.318 55.000 5.23 0.00 0.00 5.18
2553 11840 0.465460 AAGGCCTCACAAAACGCTGA 60.465 50.000 5.23 0.00 0.00 4.26
2554 11841 0.886490 AGGCCTCACAAAACGCTGAG 60.886 55.000 0.00 0.00 34.73 3.35
2555 11842 1.166531 GGCCTCACAAAACGCTGAGT 61.167 55.000 0.00 0.00 33.32 3.41
2556 11843 0.663153 GCCTCACAAAACGCTGAGTT 59.337 50.000 0.00 0.00 46.76 3.01
2570 11857 7.865706 AACGCTGAGTTTGGATTCTTATTAT 57.134 32.000 0.00 0.00 40.88 1.28
2571 11858 7.865706 ACGCTGAGTTTGGATTCTTATTATT 57.134 32.000 0.00 0.00 0.00 1.40
2572 11859 8.958119 ACGCTGAGTTTGGATTCTTATTATTA 57.042 30.769 0.00 0.00 0.00 0.98
2573 11860 9.391006 ACGCTGAGTTTGGATTCTTATTATTAA 57.609 29.630 0.00 0.00 0.00 1.40
2593 11880 1.639722 AAAATGTTGTAGGGGCCACC 58.360 50.000 0.00 0.57 40.67 4.61
2603 11890 3.836617 GGGCCACCCTTACCTCTT 58.163 61.111 4.39 0.00 41.34 2.85
2604 11891 2.084596 GGGCCACCCTTACCTCTTT 58.915 57.895 4.39 0.00 41.34 2.52
2605 11892 1.292085 GGGCCACCCTTACCTCTTTA 58.708 55.000 4.39 0.00 41.34 1.85
2606 11893 1.064906 GGGCCACCCTTACCTCTTTAC 60.065 57.143 4.39 0.00 41.34 2.01
2607 11894 1.064906 GGCCACCCTTACCTCTTTACC 60.065 57.143 0.00 0.00 0.00 2.85
2608 11895 1.631898 GCCACCCTTACCTCTTTACCA 59.368 52.381 0.00 0.00 0.00 3.25
2609 11896 2.040679 GCCACCCTTACCTCTTTACCAA 59.959 50.000 0.00 0.00 0.00 3.67
2610 11897 3.682696 CCACCCTTACCTCTTTACCAAC 58.317 50.000 0.00 0.00 0.00 3.77
2611 11898 3.073356 CCACCCTTACCTCTTTACCAACA 59.927 47.826 0.00 0.00 0.00 3.33
2612 11899 4.446600 CCACCCTTACCTCTTTACCAACAA 60.447 45.833 0.00 0.00 0.00 2.83
2613 11900 5.134661 CACCCTTACCTCTTTACCAACAAA 58.865 41.667 0.00 0.00 0.00 2.83
2614 11901 5.595133 CACCCTTACCTCTTTACCAACAAAA 59.405 40.000 0.00 0.00 0.00 2.44
2615 11902 6.266786 CACCCTTACCTCTTTACCAACAAAAT 59.733 38.462 0.00 0.00 0.00 1.82
2616 11903 7.449086 CACCCTTACCTCTTTACCAACAAAATA 59.551 37.037 0.00 0.00 0.00 1.40
2617 11904 8.005976 ACCCTTACCTCTTTACCAACAAAATAA 58.994 33.333 0.00 0.00 0.00 1.40
2618 11905 8.862085 CCCTTACCTCTTTACCAACAAAATAAA 58.138 33.333 0.00 0.00 0.00 1.40
2632 11919 9.463443 CCAACAAAATAAAAGTAAGAACTCAGG 57.537 33.333 0.00 0.00 33.75 3.86
2642 11929 9.930693 AAAAGTAAGAACTCAGGTAGTCAATAG 57.069 33.333 0.00 0.00 37.50 1.73
2643 11930 8.880991 AAGTAAGAACTCAGGTAGTCAATAGA 57.119 34.615 0.00 0.00 37.50 1.98
2644 11931 8.283699 AGTAAGAACTCAGGTAGTCAATAGAC 57.716 38.462 0.00 0.00 45.31 2.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
76 77 9.601217 AGAGCGTTTAGATCATTATTTTAGTGT 57.399 29.630 0.00 0.00 37.82 3.55
91 92 9.669353 CCGTAAACTAATATAAGAGCGTTTAGA 57.331 33.333 0.00 0.00 30.36 2.10
92 93 9.669353 TCCGTAAACTAATATAAGAGCGTTTAG 57.331 33.333 0.00 0.00 30.36 1.85
93 94 9.669353 CTCCGTAAACTAATATAAGAGCGTTTA 57.331 33.333 0.00 0.00 0.00 2.01
94 95 7.650903 CCTCCGTAAACTAATATAAGAGCGTTT 59.349 37.037 0.00 0.00 0.00 3.60
95 96 7.144000 CCTCCGTAAACTAATATAAGAGCGTT 58.856 38.462 0.00 0.00 0.00 4.84
96 97 6.294397 CCCTCCGTAAACTAATATAAGAGCGT 60.294 42.308 0.00 0.00 0.00 5.07
97 98 6.072286 TCCCTCCGTAAACTAATATAAGAGCG 60.072 42.308 0.00 0.00 0.00 5.03
98 99 7.039853 ACTCCCTCCGTAAACTAATATAAGAGC 60.040 40.741 0.00 0.00 0.00 4.09
99 100 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
109 110 9.819754 AATTAGTATATACTCCCTCCGTAAACT 57.180 33.333 18.68 0.00 37.73 2.66
111 112 9.247861 GGAATTAGTATATACTCCCTCCGTAAA 57.752 37.037 18.68 5.19 37.73 2.01
112 113 8.618385 AGGAATTAGTATATACTCCCTCCGTAA 58.382 37.037 18.68 5.87 37.73 3.18
113 114 8.051535 CAGGAATTAGTATATACTCCCTCCGTA 58.948 40.741 18.68 0.00 37.73 4.02
114 115 6.890814 CAGGAATTAGTATATACTCCCTCCGT 59.109 42.308 18.68 9.67 37.73 4.69
115 116 7.067251 GTCAGGAATTAGTATATACTCCCTCCG 59.933 44.444 18.68 15.85 37.73 4.63
116 117 8.117312 AGTCAGGAATTAGTATATACTCCCTCC 58.883 40.741 18.68 19.45 37.73 4.30
145 146 9.952188 AGCTGACTAAGATTTGTAAAAGTTTTC 57.048 29.630 3.60 0.00 0.00 2.29
189 190 7.271511 TGTGCACTTTCAATACTCCAATTTTT 58.728 30.769 19.41 0.00 0.00 1.94
246 247 4.681942 GGCTATTGCTATCCTAATATCGCG 59.318 45.833 0.00 0.00 39.59 5.87
379 382 5.074102 AGGATCCATGTCAATGTCATATGGT 59.926 40.000 15.82 1.61 39.39 3.55
395 399 4.827284 ACAAAACAGTTTCGAAGGATCCAT 59.173 37.500 15.82 0.17 0.00 3.41
555 561 4.899502 ACTAGTTGGTGTGAGGAAATCAG 58.100 43.478 0.00 0.00 39.07 2.90
563 569 5.597806 TCTGTGTTAACTAGTTGGTGTGAG 58.402 41.667 18.56 7.11 0.00 3.51
585 3728 0.614812 TACCACCGGGCTAAGGTTTC 59.385 55.000 6.32 0.00 40.59 2.78
598 3741 6.644248 AAGTGTGTTTCCTATTTTACCACC 57.356 37.500 0.00 0.00 0.00 4.61
599 3742 9.836076 GATTAAGTGTGTTTCCTATTTTACCAC 57.164 33.333 0.00 0.00 0.00 4.16
609 3752 4.579869 AGCGATGATTAAGTGTGTTTCCT 58.420 39.130 0.00 0.00 0.00 3.36
922 6066 2.028930 TCTCTCTGTTTTTCTCCTCCGC 60.029 50.000 0.00 0.00 0.00 5.54
989 6161 1.290009 GGCCTCATGGTTGTGTTGC 59.710 57.895 0.00 0.00 35.27 4.17
1021 6198 4.680237 CAGGTGGCTCACGGCGAA 62.680 66.667 16.62 0.00 42.94 4.70
1440 10609 1.939769 GCTCGTCCGCCTTCTTCTCT 61.940 60.000 0.00 0.00 0.00 3.10
1832 11075 1.818674 ACGATCCACCATTTTTGAGGC 59.181 47.619 0.00 0.00 0.00 4.70
1836 11079 4.096231 TGATGCTACGATCCACCATTTTTG 59.904 41.667 0.00 0.00 0.00 2.44
1839 11082 3.558931 TGATGCTACGATCCACCATTT 57.441 42.857 0.00 0.00 0.00 2.32
1875 11121 0.875059 CCGTTTCTTCAGAAGGGTGC 59.125 55.000 10.42 0.00 35.21 5.01
1881 11127 2.100252 AGTGTCGTCCGTTTCTTCAGAA 59.900 45.455 0.00 0.00 0.00 3.02
1907 11153 3.719479 TCCGAAAGATGGGGAATAATGGA 59.281 43.478 0.00 0.00 0.00 3.41
1938 11222 8.141909 AGTATTTCTTTTCCAACTTAAAGGTGC 58.858 33.333 0.00 0.00 29.64 5.01
1939 11223 9.463443 CAGTATTTCTTTTCCAACTTAAAGGTG 57.537 33.333 0.00 0.00 33.29 4.00
1940 11224 9.416284 TCAGTATTTCTTTTCCAACTTAAAGGT 57.584 29.630 0.00 0.00 33.29 3.50
1960 11244 9.933723 TCATCGTGATCAATATTCATTCAGTAT 57.066 29.630 0.00 0.00 0.00 2.12
1961 11245 9.762933 TTCATCGTGATCAATATTCATTCAGTA 57.237 29.630 0.00 0.00 0.00 2.74
1962 11246 8.667076 TTCATCGTGATCAATATTCATTCAGT 57.333 30.769 0.00 0.00 0.00 3.41
1963 11247 9.378597 GTTTCATCGTGATCAATATTCATTCAG 57.621 33.333 0.00 0.00 0.00 3.02
1964 11248 8.344831 GGTTTCATCGTGATCAATATTCATTCA 58.655 33.333 0.00 0.00 0.00 2.57
1965 11249 7.805071 GGGTTTCATCGTGATCAATATTCATTC 59.195 37.037 0.00 0.00 0.00 2.67
1966 11250 7.285172 TGGGTTTCATCGTGATCAATATTCATT 59.715 33.333 0.00 0.00 0.00 2.57
1967 11251 6.772233 TGGGTTTCATCGTGATCAATATTCAT 59.228 34.615 0.00 0.00 0.00 2.57
1968 11252 6.118852 TGGGTTTCATCGTGATCAATATTCA 58.881 36.000 0.00 0.00 0.00 2.57
1969 11253 6.618287 TGGGTTTCATCGTGATCAATATTC 57.382 37.500 0.00 0.00 0.00 1.75
1970 11254 7.122650 ACTTTGGGTTTCATCGTGATCAATATT 59.877 33.333 0.00 0.00 0.00 1.28
1971 11255 6.603201 ACTTTGGGTTTCATCGTGATCAATAT 59.397 34.615 0.00 0.00 0.00 1.28
1972 11256 5.943416 ACTTTGGGTTTCATCGTGATCAATA 59.057 36.000 0.00 0.00 0.00 1.90
1973 11257 4.766891 ACTTTGGGTTTCATCGTGATCAAT 59.233 37.500 0.00 0.00 0.00 2.57
1974 11258 4.023279 CACTTTGGGTTTCATCGTGATCAA 60.023 41.667 0.00 0.00 31.63 2.57
1975 11259 3.501828 CACTTTGGGTTTCATCGTGATCA 59.498 43.478 0.00 0.00 31.63 2.92
1976 11260 3.751175 TCACTTTGGGTTTCATCGTGATC 59.249 43.478 0.00 0.00 33.20 2.92
1977 11261 3.502211 GTCACTTTGGGTTTCATCGTGAT 59.498 43.478 0.00 0.00 37.31 3.06
1978 11262 2.875933 GTCACTTTGGGTTTCATCGTGA 59.124 45.455 0.00 0.00 34.65 4.35
1979 11263 2.878406 AGTCACTTTGGGTTTCATCGTG 59.122 45.455 0.00 0.00 0.00 4.35
1980 11264 3.208747 AGTCACTTTGGGTTTCATCGT 57.791 42.857 0.00 0.00 0.00 3.73
1981 11265 3.315191 ACAAGTCACTTTGGGTTTCATCG 59.685 43.478 0.00 0.00 32.32 3.84
1982 11266 4.610945 CACAAGTCACTTTGGGTTTCATC 58.389 43.478 0.00 0.00 32.32 2.92
1989 11273 1.654220 CGGCACAAGTCACTTTGGG 59.346 57.895 0.00 0.00 34.56 4.12
2030 11314 7.439056 TCACAAAAGCAAAAGAATCTGAATTCC 59.561 33.333 2.27 0.00 41.97 3.01
2074 11358 1.134729 CCCTGTTGCACTGCTTGTTTT 60.135 47.619 1.98 0.00 0.00 2.43
2106 11390 1.362717 CATACCTAGTGCCGTCCCG 59.637 63.158 0.00 0.00 0.00 5.14
2154 11441 4.105858 AGGTAGACCCAGGCTTAACTTTTT 59.894 41.667 0.00 0.00 36.42 1.94
2160 11447 8.984112 AATATATAAGGTAGACCCAGGCTTAA 57.016 34.615 0.00 0.00 36.42 1.85
2163 11450 5.965091 GGAATATATAAGGTAGACCCAGGCT 59.035 44.000 0.00 0.00 36.42 4.58
2194 11481 0.383949 GCCGCCTTGTTTCTTGAACA 59.616 50.000 0.00 0.00 46.19 3.18
2195 11482 0.383949 TGCCGCCTTGTTTCTTGAAC 59.616 50.000 0.00 0.00 38.78 3.18
2196 11483 1.000385 CATGCCGCCTTGTTTCTTGAA 60.000 47.619 0.00 0.00 0.00 2.69
2197 11484 0.597568 CATGCCGCCTTGTTTCTTGA 59.402 50.000 0.00 0.00 0.00 3.02
2198 11485 0.597568 TCATGCCGCCTTGTTTCTTG 59.402 50.000 0.00 0.00 0.00 3.02
2199 11486 1.270550 CTTCATGCCGCCTTGTTTCTT 59.729 47.619 0.00 0.00 0.00 2.52
2200 11487 0.883833 CTTCATGCCGCCTTGTTTCT 59.116 50.000 0.00 0.00 0.00 2.52
2201 11488 0.733909 GCTTCATGCCGCCTTGTTTC 60.734 55.000 0.00 0.00 35.15 2.78
2202 11489 1.290009 GCTTCATGCCGCCTTGTTT 59.710 52.632 0.00 0.00 35.15 2.83
2203 11490 1.462731 TTGCTTCATGCCGCCTTGTT 61.463 50.000 4.02 0.00 42.00 2.83
2204 11491 1.870055 CTTGCTTCATGCCGCCTTGT 61.870 55.000 4.02 0.00 42.00 3.16
2205 11492 1.153901 CTTGCTTCATGCCGCCTTG 60.154 57.895 4.02 0.00 42.00 3.61
2206 11493 2.998279 GCTTGCTTCATGCCGCCTT 61.998 57.895 4.02 0.00 42.00 4.35
2207 11494 3.446570 GCTTGCTTCATGCCGCCT 61.447 61.111 4.02 0.00 42.00 5.52
2208 11495 4.503314 GGCTTGCTTCATGCCGCC 62.503 66.667 7.77 0.00 43.00 6.13
2211 11498 2.334946 TGTCGGCTTGCTTCATGCC 61.335 57.895 12.15 12.15 46.78 4.40
2212 11499 1.154150 GTGTCGGCTTGCTTCATGC 60.154 57.895 0.00 0.00 43.25 4.06
2213 11500 0.445436 GAGTGTCGGCTTGCTTCATG 59.555 55.000 0.00 0.00 0.00 3.07
2214 11501 0.035317 TGAGTGTCGGCTTGCTTCAT 59.965 50.000 0.00 0.00 0.00 2.57
2215 11502 0.880278 GTGAGTGTCGGCTTGCTTCA 60.880 55.000 0.00 0.00 0.00 3.02
2216 11503 0.601311 AGTGAGTGTCGGCTTGCTTC 60.601 55.000 0.00 0.00 0.00 3.86
2217 11504 0.882042 CAGTGAGTGTCGGCTTGCTT 60.882 55.000 0.00 0.00 0.00 3.91
2218 11505 1.301244 CAGTGAGTGTCGGCTTGCT 60.301 57.895 0.00 0.00 0.00 3.91
2219 11506 2.959357 GCAGTGAGTGTCGGCTTGC 61.959 63.158 0.00 0.00 0.00 4.01
2220 11507 1.595109 TGCAGTGAGTGTCGGCTTG 60.595 57.895 0.00 0.00 0.00 4.01
2221 11508 1.595382 GTGCAGTGAGTGTCGGCTT 60.595 57.895 0.00 0.00 0.00 4.35
2222 11509 2.029666 GTGCAGTGAGTGTCGGCT 59.970 61.111 0.00 0.00 0.00 5.52
2223 11510 1.669115 ATGTGCAGTGAGTGTCGGC 60.669 57.895 0.00 0.00 0.00 5.54
2224 11511 0.319813 TCATGTGCAGTGAGTGTCGG 60.320 55.000 0.00 0.00 0.00 4.79
2225 11512 0.786581 GTCATGTGCAGTGAGTGTCG 59.213 55.000 2.11 0.00 0.00 4.35
2226 11513 1.797046 CTGTCATGTGCAGTGAGTGTC 59.203 52.381 2.11 0.00 0.00 3.67
2227 11514 1.139654 ACTGTCATGTGCAGTGAGTGT 59.860 47.619 19.38 2.52 44.52 3.55
2228 11515 1.875009 ACTGTCATGTGCAGTGAGTG 58.125 50.000 19.38 1.99 44.52 3.51
2229 11516 2.487934 GAACTGTCATGTGCAGTGAGT 58.512 47.619 20.30 9.71 45.36 3.41
2230 11517 1.802960 GGAACTGTCATGTGCAGTGAG 59.197 52.381 20.30 2.44 45.36 3.51
2231 11518 1.417517 AGGAACTGTCATGTGCAGTGA 59.582 47.619 20.30 0.00 45.36 3.41
2232 11519 1.888215 AGGAACTGTCATGTGCAGTG 58.112 50.000 20.30 0.00 45.36 3.66
2234 11521 1.808945 GGAAGGAACTGTCATGTGCAG 59.191 52.381 15.05 15.05 40.86 4.41
2235 11522 1.877680 CGGAAGGAACTGTCATGTGCA 60.878 52.381 0.00 0.00 40.86 4.57
2236 11523 0.798776 CGGAAGGAACTGTCATGTGC 59.201 55.000 0.00 0.00 40.86 4.57
2237 11524 2.289072 ACTCGGAAGGAACTGTCATGTG 60.289 50.000 0.00 0.00 40.86 3.21
2238 11525 1.971357 ACTCGGAAGGAACTGTCATGT 59.029 47.619 0.00 0.00 40.86 3.21
2239 11526 2.751166 ACTCGGAAGGAACTGTCATG 57.249 50.000 0.00 0.00 40.86 3.07
2240 11527 4.884668 TTTACTCGGAAGGAACTGTCAT 57.115 40.909 0.00 0.00 40.86 3.06
2241 11528 4.675976 TTTTACTCGGAAGGAACTGTCA 57.324 40.909 0.00 0.00 40.86 3.58
2242 11529 5.811100 CCTATTTTACTCGGAAGGAACTGTC 59.189 44.000 0.00 0.00 40.86 3.51
2243 11530 5.731591 CCTATTTTACTCGGAAGGAACTGT 58.268 41.667 0.00 0.00 40.86 3.55
2244 11531 4.571176 GCCTATTTTACTCGGAAGGAACTG 59.429 45.833 0.00 0.00 40.86 3.16
2246 11533 3.875727 GGCCTATTTTACTCGGAAGGAAC 59.124 47.826 0.00 0.00 0.00 3.62
2247 11534 3.520317 TGGCCTATTTTACTCGGAAGGAA 59.480 43.478 3.32 0.00 0.00 3.36
2248 11535 3.109151 TGGCCTATTTTACTCGGAAGGA 58.891 45.455 3.32 0.00 0.00 3.36
2249 11536 3.553828 TGGCCTATTTTACTCGGAAGG 57.446 47.619 3.32 0.00 0.00 3.46
2250 11537 5.701290 CCTAATGGCCTATTTTACTCGGAAG 59.299 44.000 3.32 0.00 0.00 3.46
2251 11538 5.617252 CCTAATGGCCTATTTTACTCGGAA 58.383 41.667 3.32 0.00 0.00 4.30
2252 11539 5.223449 CCTAATGGCCTATTTTACTCGGA 57.777 43.478 3.32 0.00 0.00 4.55
2267 11554 4.843728 TCTTTGAGTTAGTGGCCTAATGG 58.156 43.478 3.32 0.00 35.67 3.16
2268 11555 5.734720 TCTCTTTGAGTTAGTGGCCTAATG 58.265 41.667 3.32 0.00 35.67 1.90
2269 11556 6.567602 ATCTCTTTGAGTTAGTGGCCTAAT 57.432 37.500 3.32 0.00 35.67 1.73
2270 11557 6.173339 CAATCTCTTTGAGTTAGTGGCCTAA 58.827 40.000 3.32 0.00 37.53 2.69
2271 11558 5.734720 CAATCTCTTTGAGTTAGTGGCCTA 58.265 41.667 3.32 0.00 37.53 3.93
2272 11559 4.583871 CAATCTCTTTGAGTTAGTGGCCT 58.416 43.478 3.32 0.00 37.53 5.19
2273 11560 3.127721 GCAATCTCTTTGAGTTAGTGGCC 59.872 47.826 0.00 0.00 37.53 5.36
2274 11561 3.753272 TGCAATCTCTTTGAGTTAGTGGC 59.247 43.478 0.00 0.00 37.53 5.01
2275 11562 5.675575 GCATGCAATCTCTTTGAGTTAGTGG 60.676 44.000 14.21 0.00 37.53 4.00
2276 11563 5.123502 AGCATGCAATCTCTTTGAGTTAGTG 59.876 40.000 21.98 0.00 37.53 2.74
2277 11564 5.251764 AGCATGCAATCTCTTTGAGTTAGT 58.748 37.500 21.98 0.00 37.53 2.24
2278 11565 5.814764 AGCATGCAATCTCTTTGAGTTAG 57.185 39.130 21.98 0.00 37.53 2.34
2279 11566 6.579666 AAAGCATGCAATCTCTTTGAGTTA 57.420 33.333 21.98 0.00 37.53 2.24
2280 11567 5.464030 AAAGCATGCAATCTCTTTGAGTT 57.536 34.783 21.98 0.00 37.53 3.01
2281 11568 5.125097 CCTAAAGCATGCAATCTCTTTGAGT 59.875 40.000 21.98 0.00 37.53 3.41
2282 11569 5.579718 CCTAAAGCATGCAATCTCTTTGAG 58.420 41.667 21.98 5.74 37.53 3.02
2283 11570 4.142315 GCCTAAAGCATGCAATCTCTTTGA 60.142 41.667 21.98 0.00 42.97 2.69
2284 11571 4.110482 GCCTAAAGCATGCAATCTCTTTG 58.890 43.478 21.98 5.60 42.97 2.77
2285 11572 3.131755 GGCCTAAAGCATGCAATCTCTTT 59.868 43.478 21.98 12.66 46.50 2.52
2286 11573 2.692041 GGCCTAAAGCATGCAATCTCTT 59.308 45.455 21.98 0.36 46.50 2.85
2287 11574 2.305009 GGCCTAAAGCATGCAATCTCT 58.695 47.619 21.98 0.00 46.50 3.10
2288 11575 2.026641 TGGCCTAAAGCATGCAATCTC 58.973 47.619 21.98 3.93 46.50 2.75
2289 11576 2.148446 TGGCCTAAAGCATGCAATCT 57.852 45.000 21.98 3.20 46.50 2.40
2290 11577 2.428171 TCTTGGCCTAAAGCATGCAATC 59.572 45.455 21.98 2.24 46.50 2.67
2291 11578 2.459644 TCTTGGCCTAAAGCATGCAAT 58.540 42.857 21.98 10.57 46.50 3.56
2292 11579 1.921982 TCTTGGCCTAAAGCATGCAA 58.078 45.000 21.98 3.70 46.50 4.08
2293 11580 1.545582 GTTCTTGGCCTAAAGCATGCA 59.454 47.619 21.98 0.00 46.50 3.96
2294 11581 1.821136 AGTTCTTGGCCTAAAGCATGC 59.179 47.619 10.51 10.51 46.50 4.06
2295 11582 2.096496 CGAGTTCTTGGCCTAAAGCATG 59.904 50.000 3.32 0.00 46.50 4.06
2296 11583 2.027192 TCGAGTTCTTGGCCTAAAGCAT 60.027 45.455 3.32 0.00 46.50 3.79
2297 11584 1.346395 TCGAGTTCTTGGCCTAAAGCA 59.654 47.619 3.32 0.00 46.50 3.91
2298 11585 2.003301 CTCGAGTTCTTGGCCTAAAGC 58.997 52.381 3.32 0.00 42.60 3.51
2299 11586 3.594603 TCTCGAGTTCTTGGCCTAAAG 57.405 47.619 13.13 0.00 0.00 1.85
2300 11587 3.323979 ACTTCTCGAGTTCTTGGCCTAAA 59.676 43.478 13.13 0.00 33.92 1.85
2301 11588 2.897969 ACTTCTCGAGTTCTTGGCCTAA 59.102 45.455 13.13 0.00 33.92 2.69
2302 11589 2.231478 CACTTCTCGAGTTCTTGGCCTA 59.769 50.000 13.13 0.00 36.10 3.93
2303 11590 1.001406 CACTTCTCGAGTTCTTGGCCT 59.999 52.381 13.13 0.00 36.10 5.19
2304 11591 1.000955 TCACTTCTCGAGTTCTTGGCC 59.999 52.381 13.13 0.00 36.10 5.36
2305 11592 2.440539 TCACTTCTCGAGTTCTTGGC 57.559 50.000 13.13 0.00 36.10 4.52
2306 11593 3.119814 TCGATCACTTCTCGAGTTCTTGG 60.120 47.826 13.13 0.00 40.01 3.61
2307 11594 4.084889 TCGATCACTTCTCGAGTTCTTG 57.915 45.455 13.13 6.08 40.01 3.02
2308 11595 4.768130 TTCGATCACTTCTCGAGTTCTT 57.232 40.909 13.13 0.00 45.00 2.52
2309 11596 4.974368 ATTCGATCACTTCTCGAGTTCT 57.026 40.909 13.13 0.00 45.00 3.01
2310 11597 7.507672 TTAAATTCGATCACTTCTCGAGTTC 57.492 36.000 13.13 0.96 45.00 3.01
2311 11598 7.759886 TGATTAAATTCGATCACTTCTCGAGTT 59.240 33.333 13.13 0.00 45.00 3.01
2312 11599 7.258441 TGATTAAATTCGATCACTTCTCGAGT 58.742 34.615 13.13 0.00 45.00 4.18
2313 11600 7.685532 TGATTAAATTCGATCACTTCTCGAG 57.314 36.000 5.93 5.93 45.00 4.04
2314 11601 8.648557 ATTGATTAAATTCGATCACTTCTCGA 57.351 30.769 3.84 0.00 42.93 4.04
2383 11670 8.589338 ACATTCTTTATCCTAGTATCGCTTCAT 58.411 33.333 0.00 0.00 0.00 2.57
2384 11671 7.952671 ACATTCTTTATCCTAGTATCGCTTCA 58.047 34.615 0.00 0.00 0.00 3.02
2385 11672 9.909644 TTACATTCTTTATCCTAGTATCGCTTC 57.090 33.333 0.00 0.00 0.00 3.86
2386 11673 9.915629 CTTACATTCTTTATCCTAGTATCGCTT 57.084 33.333 0.00 0.00 0.00 4.68
2387 11674 9.080097 ACTTACATTCTTTATCCTAGTATCGCT 57.920 33.333 0.00 0.00 0.00 4.93
2388 11675 9.694137 AACTTACATTCTTTATCCTAGTATCGC 57.306 33.333 0.00 0.00 0.00 4.58
2396 11683 9.793259 TTCTTGTCAACTTACATTCTTTATCCT 57.207 29.630 0.00 0.00 0.00 3.24
2399 11686 9.574516 ACCTTCTTGTCAACTTACATTCTTTAT 57.425 29.630 0.00 0.00 0.00 1.40
2400 11687 8.974060 ACCTTCTTGTCAACTTACATTCTTTA 57.026 30.769 0.00 0.00 0.00 1.85
2401 11688 7.775561 AGACCTTCTTGTCAACTTACATTCTTT 59.224 33.333 0.00 0.00 37.73 2.52
2402 11689 7.227512 CAGACCTTCTTGTCAACTTACATTCTT 59.772 37.037 0.00 0.00 37.73 2.52
2403 11690 6.708054 CAGACCTTCTTGTCAACTTACATTCT 59.292 38.462 0.00 0.00 37.73 2.40
2404 11691 6.073003 CCAGACCTTCTTGTCAACTTACATTC 60.073 42.308 0.00 0.00 37.73 2.67
2405 11692 5.765182 CCAGACCTTCTTGTCAACTTACATT 59.235 40.000 0.00 0.00 37.73 2.71
2406 11693 5.163195 ACCAGACCTTCTTGTCAACTTACAT 60.163 40.000 0.00 0.00 37.73 2.29
2407 11694 4.163458 ACCAGACCTTCTTGTCAACTTACA 59.837 41.667 0.00 0.00 37.73 2.41
2408 11695 4.704965 ACCAGACCTTCTTGTCAACTTAC 58.295 43.478 0.00 0.00 37.73 2.34
2409 11696 5.123227 CAACCAGACCTTCTTGTCAACTTA 58.877 41.667 0.00 0.00 37.73 2.24
2410 11697 3.933861 ACCAGACCTTCTTGTCAACTT 57.066 42.857 0.00 0.00 37.73 2.66
2411 11698 3.545703 CAACCAGACCTTCTTGTCAACT 58.454 45.455 0.00 0.00 37.73 3.16
2412 11699 2.618709 CCAACCAGACCTTCTTGTCAAC 59.381 50.000 0.00 0.00 37.73 3.18
2413 11700 2.507886 TCCAACCAGACCTTCTTGTCAA 59.492 45.455 0.00 0.00 37.73 3.18
2414 11701 2.104792 CTCCAACCAGACCTTCTTGTCA 59.895 50.000 0.00 0.00 37.73 3.58
2415 11702 2.104963 ACTCCAACCAGACCTTCTTGTC 59.895 50.000 0.00 0.00 35.43 3.18
2416 11703 2.127708 ACTCCAACCAGACCTTCTTGT 58.872 47.619 0.00 0.00 0.00 3.16
2417 11704 2.938956 ACTCCAACCAGACCTTCTTG 57.061 50.000 0.00 0.00 0.00 3.02
2418 11705 3.953542 AAACTCCAACCAGACCTTCTT 57.046 42.857 0.00 0.00 0.00 2.52
2419 11706 5.073144 TGATTAAACTCCAACCAGACCTTCT 59.927 40.000 0.00 0.00 0.00 2.85
2420 11707 5.313712 TGATTAAACTCCAACCAGACCTTC 58.686 41.667 0.00 0.00 0.00 3.46
2421 11708 5.319043 TGATTAAACTCCAACCAGACCTT 57.681 39.130 0.00 0.00 0.00 3.50
2422 11709 4.993705 TGATTAAACTCCAACCAGACCT 57.006 40.909 0.00 0.00 0.00 3.85
2423 11710 6.590234 AATTGATTAAACTCCAACCAGACC 57.410 37.500 0.00 0.00 0.00 3.85
2424 11711 8.887036 AAAAATTGATTAAACTCCAACCAGAC 57.113 30.769 0.00 0.00 0.00 3.51
2458 11745 9.309224 GGCACATTTAGGGGATTATTACTTATT 57.691 33.333 0.00 0.00 0.00 1.40
2459 11746 8.678798 AGGCACATTTAGGGGATTATTACTTAT 58.321 33.333 0.00 0.00 0.00 1.73
2460 11747 8.052621 AGGCACATTTAGGGGATTATTACTTA 57.947 34.615 0.00 0.00 0.00 2.24
2461 11748 6.922540 AGGCACATTTAGGGGATTATTACTT 58.077 36.000 0.00 0.00 0.00 2.24
2462 11749 6.530601 AGGCACATTTAGGGGATTATTACT 57.469 37.500 0.00 0.00 0.00 2.24
2463 11750 7.459234 ACTAGGCACATTTAGGGGATTATTAC 58.541 38.462 0.00 0.00 0.00 1.89
2464 11751 7.642094 ACTAGGCACATTTAGGGGATTATTA 57.358 36.000 0.00 0.00 0.00 0.98
2465 11752 6.530601 ACTAGGCACATTTAGGGGATTATT 57.469 37.500 0.00 0.00 0.00 1.40
2466 11753 6.102615 TGAACTAGGCACATTTAGGGGATTAT 59.897 38.462 0.00 0.00 0.00 1.28
2467 11754 5.430417 TGAACTAGGCACATTTAGGGGATTA 59.570 40.000 0.00 0.00 0.00 1.75
2468 11755 4.229582 TGAACTAGGCACATTTAGGGGATT 59.770 41.667 0.00 0.00 0.00 3.01
2469 11756 3.785887 TGAACTAGGCACATTTAGGGGAT 59.214 43.478 0.00 0.00 0.00 3.85
2470 11757 3.054655 GTGAACTAGGCACATTTAGGGGA 60.055 47.826 11.71 0.00 36.31 4.81
2471 11758 3.054361 AGTGAACTAGGCACATTTAGGGG 60.054 47.826 17.00 0.00 38.70 4.79
2472 11759 4.222124 AGTGAACTAGGCACATTTAGGG 57.778 45.455 17.00 0.00 38.70 3.53
2473 11760 4.396166 CCAAGTGAACTAGGCACATTTAGG 59.604 45.833 17.00 9.05 38.70 2.69
2474 11761 5.003804 ACCAAGTGAACTAGGCACATTTAG 58.996 41.667 17.00 4.00 38.70 1.85
2475 11762 4.980573 ACCAAGTGAACTAGGCACATTTA 58.019 39.130 17.00 0.00 38.70 1.40
2476 11763 3.832527 ACCAAGTGAACTAGGCACATTT 58.167 40.909 17.00 4.92 38.70 2.32
2477 11764 3.508845 ACCAAGTGAACTAGGCACATT 57.491 42.857 17.00 8.12 38.70 2.71
2478 11765 3.508845 AACCAAGTGAACTAGGCACAT 57.491 42.857 17.00 5.59 38.70 3.21
2479 11766 4.425180 TTAACCAAGTGAACTAGGCACA 57.575 40.909 17.00 2.06 38.70 4.57
2480 11767 4.156008 CCATTAACCAAGTGAACTAGGCAC 59.844 45.833 9.29 9.29 36.53 5.01
2481 11768 4.042311 TCCATTAACCAAGTGAACTAGGCA 59.958 41.667 0.00 0.00 0.00 4.75
2482 11769 4.585879 TCCATTAACCAAGTGAACTAGGC 58.414 43.478 0.00 0.00 0.00 3.93
2483 11770 5.643777 CACTCCATTAACCAAGTGAACTAGG 59.356 44.000 6.99 0.00 41.26 3.02
2484 11771 5.643777 CCACTCCATTAACCAAGTGAACTAG 59.356 44.000 12.27 0.00 41.26 2.57
2485 11772 5.308497 TCCACTCCATTAACCAAGTGAACTA 59.692 40.000 12.27 0.00 41.26 2.24
2486 11773 4.104102 TCCACTCCATTAACCAAGTGAACT 59.896 41.667 12.27 0.00 41.26 3.01
2487 11774 4.394729 TCCACTCCATTAACCAAGTGAAC 58.605 43.478 12.27 0.00 41.26 3.18
2488 11775 4.715534 TCCACTCCATTAACCAAGTGAA 57.284 40.909 12.27 0.00 41.26 3.18
2489 11776 4.042809 ACATCCACTCCATTAACCAAGTGA 59.957 41.667 12.27 2.85 41.26 3.41
2490 11777 4.335416 ACATCCACTCCATTAACCAAGTG 58.665 43.478 6.14 6.14 39.04 3.16
2491 11778 4.657814 ACATCCACTCCATTAACCAAGT 57.342 40.909 0.00 0.00 0.00 3.16
2492 11779 5.496556 TGTACATCCACTCCATTAACCAAG 58.503 41.667 0.00 0.00 0.00 3.61
2493 11780 5.506730 TGTACATCCACTCCATTAACCAA 57.493 39.130 0.00 0.00 0.00 3.67
2494 11781 5.250200 GTTGTACATCCACTCCATTAACCA 58.750 41.667 0.00 0.00 0.00 3.67
2495 11782 4.638865 GGTTGTACATCCACTCCATTAACC 59.361 45.833 16.63 3.71 0.00 2.85
2496 11783 5.250200 TGGTTGTACATCCACTCCATTAAC 58.750 41.667 19.66 0.00 0.00 2.01
2497 11784 5.506730 TGGTTGTACATCCACTCCATTAA 57.493 39.130 19.66 0.00 0.00 1.40
2498 11785 5.013704 ACTTGGTTGTACATCCACTCCATTA 59.986 40.000 22.60 7.87 33.12 1.90
2499 11786 4.202567 ACTTGGTTGTACATCCACTCCATT 60.203 41.667 22.60 2.91 33.12 3.16
2500 11787 3.330701 ACTTGGTTGTACATCCACTCCAT 59.669 43.478 22.60 6.50 33.12 3.41
2501 11788 2.708861 ACTTGGTTGTACATCCACTCCA 59.291 45.455 22.60 9.47 33.12 3.86
2502 11789 3.418684 ACTTGGTTGTACATCCACTCC 57.581 47.619 22.60 7.68 33.12 3.85
2503 11790 7.305474 CAAATTACTTGGTTGTACATCCACTC 58.695 38.462 22.60 2.28 33.12 3.51
2504 11791 7.214467 CAAATTACTTGGTTGTACATCCACT 57.786 36.000 22.60 14.12 33.12 4.00
2518 11805 2.233676 GGCCTTGGACCCAAATTACTTG 59.766 50.000 0.00 0.00 35.33 3.16
2519 11806 2.111792 AGGCCTTGGACCCAAATTACTT 59.888 45.455 0.00 0.00 35.33 2.24
2520 11807 1.716503 AGGCCTTGGACCCAAATTACT 59.283 47.619 0.00 0.00 35.33 2.24
2521 11808 2.100197 GAGGCCTTGGACCCAAATTAC 58.900 52.381 6.77 0.00 35.33 1.89
2522 11809 1.713647 TGAGGCCTTGGACCCAAATTA 59.286 47.619 6.77 0.00 35.33 1.40
2523 11810 0.486879 TGAGGCCTTGGACCCAAATT 59.513 50.000 6.77 0.00 35.33 1.82
2524 11811 0.251787 GTGAGGCCTTGGACCCAAAT 60.252 55.000 6.77 0.00 35.33 2.32
2525 11812 1.152830 GTGAGGCCTTGGACCCAAA 59.847 57.895 6.77 0.00 35.33 3.28
2526 11813 1.650242 TTGTGAGGCCTTGGACCCAA 61.650 55.000 6.77 1.04 0.00 4.12
2527 11814 1.650242 TTTGTGAGGCCTTGGACCCA 61.650 55.000 6.77 0.00 0.00 4.51
2528 11815 0.469144 TTTTGTGAGGCCTTGGACCC 60.469 55.000 6.77 0.00 0.00 4.46
2529 11816 0.673985 GTTTTGTGAGGCCTTGGACC 59.326 55.000 6.77 0.00 0.00 4.46
2530 11817 0.310854 CGTTTTGTGAGGCCTTGGAC 59.689 55.000 6.77 5.02 0.00 4.02
2531 11818 1.452145 GCGTTTTGTGAGGCCTTGGA 61.452 55.000 6.77 0.00 0.00 3.53
2532 11819 1.007387 GCGTTTTGTGAGGCCTTGG 60.007 57.895 6.77 0.00 0.00 3.61
2533 11820 0.318107 CAGCGTTTTGTGAGGCCTTG 60.318 55.000 6.77 0.00 0.00 3.61
2534 11821 0.465460 TCAGCGTTTTGTGAGGCCTT 60.465 50.000 6.77 0.00 0.00 4.35
2535 11822 0.886490 CTCAGCGTTTTGTGAGGCCT 60.886 55.000 3.86 3.86 37.19 5.19
2536 11823 1.166531 ACTCAGCGTTTTGTGAGGCC 61.167 55.000 0.00 0.00 43.89 5.19
2537 11824 0.663153 AACTCAGCGTTTTGTGAGGC 59.337 50.000 4.49 0.00 43.89 4.70
2538 11825 2.541588 CCAAACTCAGCGTTTTGTGAGG 60.542 50.000 4.49 0.00 43.06 3.86
2539 11826 2.354510 TCCAAACTCAGCGTTTTGTGAG 59.645 45.455 0.00 0.00 43.06 3.51
2540 11827 2.360844 TCCAAACTCAGCGTTTTGTGA 58.639 42.857 0.00 0.00 43.06 3.58
2541 11828 2.842208 TCCAAACTCAGCGTTTTGTG 57.158 45.000 0.00 0.00 43.06 3.33
2542 11829 3.632145 AGAATCCAAACTCAGCGTTTTGT 59.368 39.130 0.00 0.00 43.06 2.83
2543 11830 4.228912 AGAATCCAAACTCAGCGTTTTG 57.771 40.909 0.00 0.00 43.06 2.44
2544 11831 4.918810 AAGAATCCAAACTCAGCGTTTT 57.081 36.364 0.00 0.00 43.06 2.43
2545 11832 6.575162 AATAAGAATCCAAACTCAGCGTTT 57.425 33.333 0.00 0.00 46.41 3.60
2546 11833 7.865706 ATAATAAGAATCCAAACTCAGCGTT 57.134 32.000 0.00 0.00 37.47 4.84
2547 11834 7.865706 AATAATAAGAATCCAAACTCAGCGT 57.134 32.000 0.00 0.00 0.00 5.07
2573 11860 1.974957 GGTGGCCCCTACAACATTTTT 59.025 47.619 0.00 0.00 0.00 1.94
2574 11861 1.639722 GGTGGCCCCTACAACATTTT 58.360 50.000 0.00 0.00 0.00 1.82
2575 11862 3.374318 GGTGGCCCCTACAACATTT 57.626 52.632 0.00 0.00 0.00 2.32
2586 11873 1.064906 GTAAAGAGGTAAGGGTGGCCC 60.065 57.143 0.00 0.00 45.90 5.80
2587 11874 1.064906 GGTAAAGAGGTAAGGGTGGCC 60.065 57.143 0.00 0.00 0.00 5.36
2588 11875 1.631898 TGGTAAAGAGGTAAGGGTGGC 59.368 52.381 0.00 0.00 0.00 5.01
2589 11876 3.073356 TGTTGGTAAAGAGGTAAGGGTGG 59.927 47.826 0.00 0.00 0.00 4.61
2590 11877 4.360951 TGTTGGTAAAGAGGTAAGGGTG 57.639 45.455 0.00 0.00 0.00 4.61
2591 11878 5.391577 TTTGTTGGTAAAGAGGTAAGGGT 57.608 39.130 0.00 0.00 0.00 4.34
2592 11879 6.911250 ATTTTGTTGGTAAAGAGGTAAGGG 57.089 37.500 0.00 0.00 0.00 3.95
2606 11893 9.463443 CCTGAGTTCTTACTTTTATTTTGTTGG 57.537 33.333 0.00 0.00 33.84 3.77
2616 11903 9.930693 CTATTGACTACCTGAGTTCTTACTTTT 57.069 33.333 0.00 0.00 39.06 2.27
2617 11904 9.310449 TCTATTGACTACCTGAGTTCTTACTTT 57.690 33.333 0.00 0.00 39.06 2.66
2618 11905 8.741841 GTCTATTGACTACCTGAGTTCTTACTT 58.258 37.037 0.00 0.00 39.06 2.24
2619 11906 7.066043 CGTCTATTGACTACCTGAGTTCTTACT 59.934 40.741 5.76 0.00 39.06 2.24
2620 11907 7.148272 ACGTCTATTGACTACCTGAGTTCTTAC 60.148 40.741 5.76 0.00 39.06 2.34
2621 11908 6.883217 ACGTCTATTGACTACCTGAGTTCTTA 59.117 38.462 5.76 0.00 39.06 2.10
2622 11909 5.711036 ACGTCTATTGACTACCTGAGTTCTT 59.289 40.000 5.76 0.00 39.06 2.52
2623 11910 5.254901 ACGTCTATTGACTACCTGAGTTCT 58.745 41.667 5.76 0.00 39.06 3.01
2624 11911 5.564048 ACGTCTATTGACTACCTGAGTTC 57.436 43.478 5.76 0.00 39.06 3.01
2625 11912 5.979288 AACGTCTATTGACTACCTGAGTT 57.021 39.130 5.76 0.00 39.06 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.