Multiple sequence alignment - TraesCS7A01G497400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G497400 chr7A 100.000 3564 0 0 1 3564 688152529 688156092 0.000000e+00 6582.0
1 TraesCS7A01G497400 chr7A 88.393 336 9 8 1 335 47533284 47532978 9.340000e-101 377.0
2 TraesCS7A01G497400 chr7A 77.419 310 56 12 390 693 570136938 570137239 4.730000e-39 172.0
3 TraesCS7A01G497400 chr7D 96.556 1655 50 3 1006 2654 595024098 595025751 0.000000e+00 2734.0
4 TraesCS7A01G497400 chr7D 91.216 296 25 1 2815 3110 595025750 595026044 5.540000e-108 401.0
5 TraesCS7A01G497400 chr7D 88.803 259 23 4 3309 3564 595026681 595026936 2.670000e-81 313.0
6 TraesCS7A01G497400 chr7D 80.499 441 52 14 524 963 595023692 595024099 1.240000e-79 307.0
7 TraesCS7A01G497400 chr7D 83.200 125 16 4 331 453 595023562 595023683 3.760000e-20 110.0
8 TraesCS7A01G497400 chrUn 92.642 965 48 6 1140 2104 458089679 458088738 0.000000e+00 1367.0
9 TraesCS7A01G497400 chrUn 90.942 276 24 1 2815 3090 480836478 480836752 1.560000e-98 370.0
10 TraesCS7A01G497400 chr7B 89.111 450 32 6 326 773 672625000 672625434 8.700000e-151 544.0
11 TraesCS7A01G497400 chr7B 84.274 585 55 13 524 1107 672633075 672633623 1.460000e-148 536.0
12 TraesCS7A01G497400 chr7B 83.529 340 35 9 1 335 2574347 2574670 7.480000e-77 298.0
13 TraesCS7A01G497400 chr7B 79.181 293 53 5 411 700 531683736 531684023 2.810000e-46 196.0
14 TraesCS7A01G497400 chr7B 78.369 282 57 2 422 700 527045611 527045331 2.830000e-41 180.0
15 TraesCS7A01G497400 chr7B 78.148 270 55 4 426 693 3682570 3682303 6.120000e-38 169.0
16 TraesCS7A01G497400 chr7B 84.211 114 11 6 334 444 672632948 672633057 1.750000e-18 104.0
17 TraesCS7A01G497400 chr1A 93.750 336 14 3 1 335 107283194 107283523 6.870000e-137 497.0
18 TraesCS7A01G497400 chr1A 88.095 336 26 3 1 335 107284636 107284958 1.550000e-103 387.0
19 TraesCS7A01G497400 chr1A 86.735 196 19 5 9 200 513846394 513846202 1.000000e-50 211.0
20 TraesCS7A01G497400 chr2D 83.728 338 36 12 1 333 34670915 34670592 5.780000e-78 302.0
21 TraesCS7A01G497400 chr6A 82.883 333 39 9 8 335 525269216 525268897 2.090000e-72 283.0
22 TraesCS7A01G497400 chr6A 95.783 166 7 0 2653 2818 98747399 98747564 5.860000e-68 268.0
23 TraesCS7A01G497400 chr6A 94.186 172 9 1 2645 2816 616111821 616111651 9.810000e-66 261.0
24 TraesCS7A01G497400 chr6B 82.687 335 34 10 1 333 649695296 649694984 3.500000e-70 276.0
25 TraesCS7A01G497400 chr6B 82.388 335 35 10 1 333 649643521 649643209 1.630000e-68 270.0
26 TraesCS7A01G497400 chr6B 100.000 28 0 0 3125 3152 614578859 614578832 6.000000e-03 52.8
27 TraesCS7A01G497400 chr6D 95.181 166 8 0 2652 2817 34664581 34664416 2.730000e-66 263.0
28 TraesCS7A01G497400 chr2A 94.675 169 9 0 2649 2817 683721321 683721489 2.730000e-66 263.0
29 TraesCS7A01G497400 chr4A 92.697 178 13 0 2639 2816 641380486 641380663 1.270000e-64 257.0
30 TraesCS7A01G497400 chr4A 80.508 236 41 4 430 662 108868625 108868392 3.660000e-40 176.0
31 TraesCS7A01G497400 chr2B 93.220 177 9 3 2649 2823 180618127 180617952 1.270000e-64 257.0
32 TraesCS7A01G497400 chr2B 93.642 173 9 2 2653 2824 254691625 254691796 1.270000e-64 257.0
33 TraesCS7A01G497400 chr2B 92.571 175 13 0 2650 2824 47170743 47170917 5.910000e-63 252.0
34 TraesCS7A01G497400 chr1D 92.655 177 12 1 2641 2816 288702863 288702687 1.640000e-63 254.0
35 TraesCS7A01G497400 chr1D 80.488 287 48 8 411 693 487907243 487907525 2.790000e-51 213.0
36 TraesCS7A01G497400 chr3D 80.342 234 44 2 417 649 21886505 21886737 3.660000e-40 176.0
37 TraesCS7A01G497400 chr5A 77.441 297 62 5 408 701 461804822 461805116 4.730000e-39 172.0
38 TraesCS7A01G497400 chr5A 89.796 98 9 1 216 312 654415265 654415168 1.340000e-24 124.0
39 TraesCS7A01G497400 chr5B 97.143 35 0 1 3121 3154 563743645 563743611 1.380000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G497400 chr7A 688152529 688156092 3563 False 6582 6582 100.0000 1 3564 1 chr7A.!!$F2 3563
1 TraesCS7A01G497400 chr7D 595023562 595026936 3374 False 773 2734 88.0548 331 3564 5 chr7D.!!$F1 3233
2 TraesCS7A01G497400 chrUn 458088738 458089679 941 True 1367 1367 92.6420 1140 2104 1 chrUn.!!$R1 964
3 TraesCS7A01G497400 chr7B 672632948 672633623 675 False 320 536 84.2425 334 1107 2 chr7B.!!$F4 773
4 TraesCS7A01G497400 chr1A 107283194 107284958 1764 False 442 497 90.9225 1 335 2 chr1A.!!$F1 334

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
964 968 0.023858 GCAAGCGAACTCGATCGAAC 59.976 55.0 19.92 12.12 45.48 3.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2695 3751 0.397941 CATCCGGATGTGGTAGCCAT 59.602 55.0 32.39 0.0 35.28 4.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 50 2.103143 CTGGCGATTCGAGCGTCT 59.897 61.111 10.88 0.00 33.92 4.18
62 64 1.372499 CGTCTTTGACCGCTCGGAA 60.372 57.895 15.95 0.00 38.96 4.30
73 75 2.009774 CCGCTCGGAATCAAGTTCATT 58.990 47.619 1.35 0.00 38.64 2.57
101 103 1.804748 GCATTGGGCTAAGGCGTATAC 59.195 52.381 4.11 0.00 36.25 1.47
114 116 0.249489 CGTATACTGCTCTGCCACCC 60.249 60.000 0.56 0.00 0.00 4.61
130 132 1.425448 CACCCCCTCTCCTCTGTTTTT 59.575 52.381 0.00 0.00 0.00 1.94
153 155 2.608550 GGGTTCATTCCCCCGTGGA 61.609 63.158 0.00 0.00 43.18 4.02
174 176 0.249120 TTCGATGGATGTTGAGCGGT 59.751 50.000 0.00 0.00 0.00 5.68
182 184 1.131126 GATGTTGAGCGGTTGACATGG 59.869 52.381 17.72 0.00 33.21 3.66
255 257 1.083401 GCAATTGCTATCGTCGCGG 60.083 57.895 23.21 0.00 38.21 6.46
258 260 1.151777 AATTGCTATCGTCGCGGTGG 61.152 55.000 6.13 0.00 0.00 4.61
311 313 1.375396 TTGGAGTTGTCGCGATGGG 60.375 57.895 14.06 0.00 0.00 4.00
312 314 1.822114 TTGGAGTTGTCGCGATGGGA 61.822 55.000 14.06 0.00 0.00 4.37
313 315 1.144057 GGAGTTGTCGCGATGGGAT 59.856 57.895 14.06 0.00 0.00 3.85
314 316 1.154205 GGAGTTGTCGCGATGGGATG 61.154 60.000 14.06 0.00 0.00 3.51
315 317 1.153369 AGTTGTCGCGATGGGATGG 60.153 57.895 14.06 0.00 0.00 3.51
341 343 2.143925 GCCGTAGTGTGCTTCTCTTTT 58.856 47.619 0.00 0.00 0.00 2.27
381 383 9.845740 AGATGCCACATATGTTGTAATTTACTA 57.154 29.630 5.37 0.00 36.57 1.82
384 386 9.456147 TGCCACATATGTTGTAATTTACTAAGT 57.544 29.630 5.37 0.00 36.57 2.24
424 426 4.277257 GCATTCAGCGAATCAACATGTA 57.723 40.909 0.00 0.00 28.87 2.29
444 446 2.915869 AGTTGGATGGTTAGGAGGACA 58.084 47.619 0.00 0.00 0.00 4.02
448 450 1.486726 GGATGGTTAGGAGGACAGTGG 59.513 57.143 0.00 0.00 0.00 4.00
453 455 3.245839 TGGTTAGGAGGACAGTGGTATCA 60.246 47.826 0.00 0.00 0.00 2.15
456 458 3.404869 AGGAGGACAGTGGTATCATCA 57.595 47.619 0.00 0.00 0.00 3.07
458 460 3.034635 GGAGGACAGTGGTATCATCAGT 58.965 50.000 0.00 0.00 0.00 3.41
461 463 2.766263 GGACAGTGGTATCATCAGTCCA 59.234 50.000 15.54 0.00 39.04 4.02
465 467 3.627395 GTGGTATCATCAGTCCACCAA 57.373 47.619 0.00 0.00 42.90 3.67
466 468 3.950397 GTGGTATCATCAGTCCACCAAA 58.050 45.455 0.00 0.00 42.90 3.28
467 469 3.941483 GTGGTATCATCAGTCCACCAAAG 59.059 47.826 0.00 0.00 42.90 2.77
468 470 3.587061 TGGTATCATCAGTCCACCAAAGT 59.413 43.478 0.00 0.00 36.36 2.66
469 471 4.042809 TGGTATCATCAGTCCACCAAAGTT 59.957 41.667 0.00 0.00 36.36 2.66
470 472 4.636206 GGTATCATCAGTCCACCAAAGTTC 59.364 45.833 0.00 0.00 0.00 3.01
471 473 3.855255 TCATCAGTCCACCAAAGTTCA 57.145 42.857 0.00 0.00 0.00 3.18
472 474 3.743521 TCATCAGTCCACCAAAGTTCAG 58.256 45.455 0.00 0.00 0.00 3.02
473 475 2.638480 TCAGTCCACCAAAGTTCAGG 57.362 50.000 0.00 0.00 0.00 3.86
474 476 1.843851 TCAGTCCACCAAAGTTCAGGT 59.156 47.619 0.00 0.00 39.10 4.00
475 477 3.042682 TCAGTCCACCAAAGTTCAGGTA 58.957 45.455 0.07 0.00 36.07 3.08
476 478 3.139077 CAGTCCACCAAAGTTCAGGTAC 58.861 50.000 0.07 0.00 36.07 3.34
477 479 3.046374 AGTCCACCAAAGTTCAGGTACT 58.954 45.455 0.07 0.00 43.88 2.73
478 480 4.039973 CAGTCCACCAAAGTTCAGGTACTA 59.960 45.833 0.07 0.00 36.02 1.82
479 481 4.283722 AGTCCACCAAAGTTCAGGTACTAG 59.716 45.833 0.07 0.00 36.02 2.57
480 482 4.282703 GTCCACCAAAGTTCAGGTACTAGA 59.717 45.833 0.00 0.00 36.02 2.43
481 483 5.046520 GTCCACCAAAGTTCAGGTACTAGAT 60.047 44.000 0.00 0.00 36.02 1.98
482 484 5.546499 TCCACCAAAGTTCAGGTACTAGATT 59.454 40.000 0.00 0.00 36.02 2.40
483 485 6.043938 TCCACCAAAGTTCAGGTACTAGATTT 59.956 38.462 0.00 0.00 36.02 2.17
484 486 6.149474 CCACCAAAGTTCAGGTACTAGATTTG 59.851 42.308 0.00 1.01 36.02 2.32
485 487 6.149474 CACCAAAGTTCAGGTACTAGATTTGG 59.851 42.308 19.90 19.90 37.89 3.28
486 488 5.123979 CCAAAGTTCAGGTACTAGATTTGGC 59.876 44.000 14.46 0.00 36.02 4.52
487 489 5.499004 AAGTTCAGGTACTAGATTTGGCA 57.501 39.130 0.00 0.00 36.02 4.92
488 490 5.700402 AGTTCAGGTACTAGATTTGGCAT 57.300 39.130 0.00 0.00 36.02 4.40
489 491 6.067217 AGTTCAGGTACTAGATTTGGCATT 57.933 37.500 0.00 0.00 36.02 3.56
490 492 7.195374 AGTTCAGGTACTAGATTTGGCATTA 57.805 36.000 0.00 0.00 36.02 1.90
491 493 7.275920 AGTTCAGGTACTAGATTTGGCATTAG 58.724 38.462 0.00 0.00 36.02 1.73
492 494 6.808321 TCAGGTACTAGATTTGGCATTAGT 57.192 37.500 0.00 0.00 36.02 2.24
493 495 6.582636 TCAGGTACTAGATTTGGCATTAGTG 58.417 40.000 0.00 0.00 36.02 2.74
494 496 5.237344 CAGGTACTAGATTTGGCATTAGTGC 59.763 44.000 0.74 0.74 45.03 4.40
495 497 5.131142 AGGTACTAGATTTGGCATTAGTGCT 59.869 40.000 10.29 0.00 45.09 4.40
496 498 6.686632 AGGTACTAGATTTGGCATTAGTGCTC 60.687 42.308 10.29 0.00 45.09 4.26
497 499 9.765949 AGGTACTAGATTTGGCATTAGTGCTCG 62.766 44.444 10.29 0.00 45.09 5.03
508 510 4.973396 CATTAGTGCTCGCATTTTTCTGA 58.027 39.130 0.00 0.00 0.00 3.27
509 511 5.393124 CATTAGTGCTCGCATTTTTCTGAA 58.607 37.500 0.00 0.00 0.00 3.02
510 512 5.627499 TTAGTGCTCGCATTTTTCTGAAT 57.373 34.783 0.00 0.00 0.00 2.57
511 513 4.510038 AGTGCTCGCATTTTTCTGAATT 57.490 36.364 0.00 0.00 0.00 2.17
512 514 4.874970 AGTGCTCGCATTTTTCTGAATTT 58.125 34.783 0.00 0.00 0.00 1.82
513 515 6.012658 AGTGCTCGCATTTTTCTGAATTTA 57.987 33.333 0.00 0.00 0.00 1.40
514 516 6.624423 AGTGCTCGCATTTTTCTGAATTTAT 58.376 32.000 0.00 0.00 0.00 1.40
515 517 7.092716 AGTGCTCGCATTTTTCTGAATTTATT 58.907 30.769 0.00 0.00 0.00 1.40
516 518 7.599998 AGTGCTCGCATTTTTCTGAATTTATTT 59.400 29.630 0.00 0.00 0.00 1.40
517 519 7.894753 GTGCTCGCATTTTTCTGAATTTATTTC 59.105 33.333 0.00 0.00 34.72 2.17
518 520 7.598118 TGCTCGCATTTTTCTGAATTTATTTCA 59.402 29.630 0.00 0.00 42.09 2.69
533 535 2.437200 TTTCAGGCTTTTCGGCAATG 57.563 45.000 0.00 0.00 41.46 2.82
536 538 1.269448 TCAGGCTTTTCGGCAATGTTC 59.731 47.619 0.00 0.00 41.46 3.18
542 544 3.367607 CTTTTCGGCAATGTTCGTTCAA 58.632 40.909 0.00 0.00 0.00 2.69
546 548 1.198867 CGGCAATGTTCGTTCAATGGA 59.801 47.619 0.00 0.00 0.00 3.41
549 551 3.057596 GGCAATGTTCGTTCAATGGAAGA 60.058 43.478 0.00 0.00 32.62 2.87
554 556 4.447290 TGTTCGTTCAATGGAAGAAGACA 58.553 39.130 0.00 0.00 32.62 3.41
560 562 5.858581 CGTTCAATGGAAGAAGACATTTTCC 59.141 40.000 0.00 0.00 40.59 3.13
581 583 1.138883 GACTACGAGGCGCATGTGA 59.861 57.895 10.83 0.00 0.00 3.58
591 593 0.025513 GCGCATGTGATGACTTCGTC 59.974 55.000 11.26 0.00 0.00 4.20
594 596 2.472886 CGCATGTGATGACTTCGTCAAC 60.473 50.000 0.00 0.00 45.96 3.18
595 597 2.159653 GCATGTGATGACTTCGTCAACC 60.160 50.000 2.65 0.00 45.96 3.77
597 599 3.469008 TGTGATGACTTCGTCAACCTT 57.531 42.857 2.65 0.00 45.96 3.50
604 606 5.462530 TGACTTCGTCAACCTTAAGATGA 57.537 39.130 3.36 5.47 39.78 2.92
611 613 7.591421 TCGTCAACCTTAAGATGATATACCA 57.409 36.000 3.36 0.00 0.00 3.25
615 617 9.614792 GTCAACCTTAAGATGATATACCAACTT 57.385 33.333 3.36 0.00 34.31 2.66
616 618 9.613428 TCAACCTTAAGATGATATACCAACTTG 57.387 33.333 3.36 0.00 32.55 3.16
626 628 4.285851 CCAACTTGGTCTCTCGGC 57.714 61.111 0.00 0.00 31.35 5.54
637 639 1.007964 CTCTCGGCGGTGCTCATAG 60.008 63.158 7.21 0.00 0.00 2.23
638 640 2.028190 CTCGGCGGTGCTCATAGG 59.972 66.667 7.21 0.00 0.00 2.57
649 651 1.576757 TGCTCATAGGGGTAGGGTGTA 59.423 52.381 0.00 0.00 0.00 2.90
652 654 0.677842 CATAGGGGTAGGGTGTACGC 59.322 60.000 0.00 0.00 0.00 4.42
664 666 0.447739 GTGTACGCGCGTGTGTTTAC 60.448 55.000 42.78 31.13 40.00 2.01
666 668 0.229247 GTACGCGCGTGTGTTTACAA 59.771 50.000 42.78 19.17 38.82 2.41
673 675 1.671845 GCGTGTGTTTACAAGGGTGAA 59.328 47.619 0.00 0.00 38.82 3.18
693 695 6.017934 GGTGAATGTATGCTCGTGTATTTGAT 60.018 38.462 0.00 0.00 0.00 2.57
694 696 7.409697 GTGAATGTATGCTCGTGTATTTGATT 58.590 34.615 0.00 0.00 0.00 2.57
701 703 6.312399 TGCTCGTGTATTTGATTGACTTTT 57.688 33.333 0.00 0.00 0.00 2.27
702 704 6.734137 TGCTCGTGTATTTGATTGACTTTTT 58.266 32.000 0.00 0.00 0.00 1.94
725 727 5.614923 TTTTCTTTGAGACGTGTGTTTGA 57.385 34.783 0.00 0.00 0.00 2.69
726 728 4.857871 TTCTTTGAGACGTGTGTTTGAG 57.142 40.909 0.00 0.00 0.00 3.02
727 729 3.857052 TCTTTGAGACGTGTGTTTGAGT 58.143 40.909 0.00 0.00 0.00 3.41
728 730 3.616821 TCTTTGAGACGTGTGTTTGAGTG 59.383 43.478 0.00 0.00 0.00 3.51
729 731 2.951457 TGAGACGTGTGTTTGAGTGA 57.049 45.000 0.00 0.00 0.00 3.41
730 732 2.536365 TGAGACGTGTGTTTGAGTGAC 58.464 47.619 0.00 0.00 0.00 3.67
731 733 2.165641 TGAGACGTGTGTTTGAGTGACT 59.834 45.455 0.00 0.00 0.00 3.41
732 734 3.187700 GAGACGTGTGTTTGAGTGACTT 58.812 45.455 0.00 0.00 0.00 3.01
733 735 3.596214 AGACGTGTGTTTGAGTGACTTT 58.404 40.909 0.00 0.00 0.00 2.66
734 736 3.370978 AGACGTGTGTTTGAGTGACTTTG 59.629 43.478 0.00 0.00 0.00 2.77
735 737 3.071479 ACGTGTGTTTGAGTGACTTTGT 58.929 40.909 0.00 0.00 0.00 2.83
736 738 3.500680 ACGTGTGTTTGAGTGACTTTGTT 59.499 39.130 0.00 0.00 0.00 2.83
737 739 4.088648 CGTGTGTTTGAGTGACTTTGTTC 58.911 43.478 0.00 0.00 0.00 3.18
738 740 4.377943 CGTGTGTTTGAGTGACTTTGTTCA 60.378 41.667 0.00 0.00 0.00 3.18
739 741 5.457140 GTGTGTTTGAGTGACTTTGTTCAA 58.543 37.500 0.00 0.00 0.00 2.69
876 880 2.030401 CGTCCAAAATCCCGTGCGA 61.030 57.895 0.00 0.00 0.00 5.10
964 968 0.023858 GCAAGCGAACTCGATCGAAC 59.976 55.000 19.92 12.12 45.48 3.95
967 971 2.455295 AGCGAACTCGATCGAACTAC 57.545 50.000 19.92 9.75 45.48 2.73
989 993 0.894141 CATCTAGCCCTCCGATCCTG 59.106 60.000 0.00 0.00 0.00 3.86
1095 1099 1.081906 CGACGTGCTGCAATTGCTT 60.082 52.632 29.37 8.24 42.66 3.91
1254 1258 2.356135 GCTCAGCCTAACGAATTTCCA 58.644 47.619 0.00 0.00 0.00 3.53
1292 1296 4.767255 GTCCTCCACTGCAGCGGG 62.767 72.222 20.47 18.56 0.00 6.13
1333 1337 1.404181 GCCATGTGCTACGAGAAGTGA 60.404 52.381 0.00 0.00 36.87 3.41
1561 1565 4.348656 TCGATCGCACATTGAGTAAGTAC 58.651 43.478 11.09 0.00 0.00 2.73
1674 1680 2.707849 CGGGACTACGAGTGGGTGG 61.708 68.421 0.00 0.00 35.47 4.61
1787 1793 1.715585 GACCATGAACCGATGCGTG 59.284 57.895 0.00 0.00 0.00 5.34
1790 1796 1.061411 CATGAACCGATGCGTGCAG 59.939 57.895 0.00 0.00 0.00 4.41
1821 1827 0.109458 CGACCACGACGATGAAGGAA 60.109 55.000 0.00 0.00 42.66 3.36
1866 1872 2.908940 AACCCACCGTCGACGTCT 60.909 61.111 33.49 17.45 37.74 4.18
1867 1873 2.492773 AACCCACCGTCGACGTCTT 61.493 57.895 33.49 16.66 37.74 3.01
1871 1877 1.660575 CACCGTCGACGTCTTTGCT 60.661 57.895 33.49 8.45 37.74 3.91
2042 2048 4.380531 CGAGTAATACCATGGAGTTGCAT 58.619 43.478 21.47 6.26 0.00 3.96
2163 2169 8.600449 AATAGACTCTAGTGTATGTACGTACC 57.400 38.462 22.43 12.46 35.11 3.34
2387 2397 7.489757 CAGTATGCTTCTAAGTCTAACCTTGTC 59.510 40.741 0.00 0.00 0.00 3.18
2406 2416 7.607991 ACCTTGTCTTATTTTCTGTGGATGTAG 59.392 37.037 0.00 0.00 0.00 2.74
2607 3663 1.002900 ACACTTGTTTTCACGCATCCG 60.003 47.619 0.00 0.00 41.14 4.18
2617 3673 3.361158 CGCATCCGTTGTGCCCAA 61.361 61.111 0.00 0.00 39.39 4.12
2624 3680 4.440802 GCATCCGTTGTGCCCAAAATTATA 60.441 41.667 0.00 0.00 36.61 0.98
2637 3693 8.682710 TGCCCAAAATTATATGTGAGAAGTAAC 58.317 33.333 0.00 0.00 0.00 2.50
2662 3718 9.760077 ACTATTTGTAAACATATACTCCCTTCG 57.240 33.333 0.00 0.00 0.00 3.79
2663 3719 9.760077 CTATTTGTAAACATATACTCCCTTCGT 57.240 33.333 0.00 0.00 0.00 3.85
2665 3721 8.483307 TTTGTAAACATATACTCCCTTCGTTC 57.517 34.615 0.00 0.00 0.00 3.95
2666 3722 6.576185 TGTAAACATATACTCCCTTCGTTCC 58.424 40.000 0.00 0.00 0.00 3.62
2667 3723 5.952347 AAACATATACTCCCTTCGTTCCT 57.048 39.130 0.00 0.00 0.00 3.36
2668 3724 7.560991 TGTAAACATATACTCCCTTCGTTCCTA 59.439 37.037 0.00 0.00 0.00 2.94
2669 3725 7.427989 AAACATATACTCCCTTCGTTCCTAA 57.572 36.000 0.00 0.00 0.00 2.69
2670 3726 7.427989 AACATATACTCCCTTCGTTCCTAAA 57.572 36.000 0.00 0.00 0.00 1.85
2671 3727 7.613551 ACATATACTCCCTTCGTTCCTAAAT 57.386 36.000 0.00 0.00 0.00 1.40
2672 3728 8.716674 ACATATACTCCCTTCGTTCCTAAATA 57.283 34.615 0.00 0.00 0.00 1.40
2673 3729 9.151177 ACATATACTCCCTTCGTTCCTAAATAA 57.849 33.333 0.00 0.00 0.00 1.40
2676 3732 8.904099 ATACTCCCTTCGTTCCTAAATAATTG 57.096 34.615 0.00 0.00 0.00 2.32
2677 3733 6.718294 ACTCCCTTCGTTCCTAAATAATTGT 58.282 36.000 0.00 0.00 0.00 2.71
2678 3734 6.822170 ACTCCCTTCGTTCCTAAATAATTGTC 59.178 38.462 0.00 0.00 0.00 3.18
2679 3735 6.954232 TCCCTTCGTTCCTAAATAATTGTCT 58.046 36.000 0.00 0.00 0.00 3.41
2680 3736 7.399634 TCCCTTCGTTCCTAAATAATTGTCTT 58.600 34.615 0.00 0.00 0.00 3.01
2681 3737 7.886446 TCCCTTCGTTCCTAAATAATTGTCTTT 59.114 33.333 0.00 0.00 0.00 2.52
2682 3738 8.182227 CCCTTCGTTCCTAAATAATTGTCTTTC 58.818 37.037 0.00 0.00 0.00 2.62
2683 3739 8.947115 CCTTCGTTCCTAAATAATTGTCTTTCT 58.053 33.333 0.00 0.00 0.00 2.52
2702 3758 8.268850 TCTTTCTAGACATTTCAAATGGCTAC 57.731 34.615 20.19 6.25 38.54 3.58
2703 3759 7.336931 TCTTTCTAGACATTTCAAATGGCTACC 59.663 37.037 20.19 1.96 38.54 3.18
2704 3760 6.061022 TCTAGACATTTCAAATGGCTACCA 57.939 37.500 20.19 8.41 38.54 3.25
2705 3761 5.880332 TCTAGACATTTCAAATGGCTACCAC 59.120 40.000 20.19 0.99 38.54 4.16
2706 3762 4.406456 AGACATTTCAAATGGCTACCACA 58.594 39.130 17.52 0.00 35.20 4.17
2707 3763 5.018809 AGACATTTCAAATGGCTACCACAT 58.981 37.500 17.52 0.00 35.20 3.21
2708 3764 5.126061 AGACATTTCAAATGGCTACCACATC 59.874 40.000 17.52 0.29 35.20 3.06
2709 3765 4.160252 ACATTTCAAATGGCTACCACATCC 59.840 41.667 14.70 0.00 35.80 3.51
2710 3766 2.036958 TCAAATGGCTACCACATCCG 57.963 50.000 0.00 0.00 35.80 4.18
2711 3767 1.024271 CAAATGGCTACCACATCCGG 58.976 55.000 0.00 0.00 35.80 5.14
2712 3768 0.916086 AAATGGCTACCACATCCGGA 59.084 50.000 6.61 6.61 35.80 5.14
2713 3769 1.140312 AATGGCTACCACATCCGGAT 58.860 50.000 12.38 12.38 35.80 4.18
2714 3770 0.397941 ATGGCTACCACATCCGGATG 59.602 55.000 37.23 37.23 44.15 3.51
2730 3786 8.777865 CATCCGGATGTATGTAGACATATTTT 57.222 34.615 32.39 0.00 40.18 1.82
2731 3787 9.869757 CATCCGGATGTATGTAGACATATTTTA 57.130 33.333 32.39 0.00 40.18 1.52
2733 3789 9.304335 TCCGGATGTATGTAGACATATTTTAGA 57.696 33.333 0.00 0.00 40.18 2.10
2734 3790 9.923143 CCGGATGTATGTAGACATATTTTAGAA 57.077 33.333 0.00 0.00 40.18 2.10
2768 3824 9.863845 TCACTCATTTTATTTCGTATGTAGTCA 57.136 29.630 0.00 0.00 0.00 3.41
2769 3825 9.901724 CACTCATTTTATTTCGTATGTAGTCAC 57.098 33.333 0.00 0.00 0.00 3.67
2770 3826 9.871238 ACTCATTTTATTTCGTATGTAGTCACT 57.129 29.630 0.00 0.00 0.00 3.41
2776 3832 9.478768 TTTATTTCGTATGTAGTCACTTGTTGA 57.521 29.630 0.00 0.00 0.00 3.18
2777 3833 7.956420 ATTTCGTATGTAGTCACTTGTTGAA 57.044 32.000 0.00 0.00 35.39 2.69
2778 3834 7.773864 TTTCGTATGTAGTCACTTGTTGAAA 57.226 32.000 0.00 0.00 35.39 2.69
2779 3835 7.956420 TTCGTATGTAGTCACTTGTTGAAAT 57.044 32.000 0.00 0.00 35.39 2.17
2780 3836 9.478768 TTTCGTATGTAGTCACTTGTTGAAATA 57.521 29.630 0.00 0.00 35.39 1.40
2781 3837 9.647797 TTCGTATGTAGTCACTTGTTGAAATAT 57.352 29.630 0.00 0.00 35.39 1.28
2782 3838 9.297586 TCGTATGTAGTCACTTGTTGAAATATC 57.702 33.333 0.00 0.00 35.39 1.63
2783 3839 9.302345 CGTATGTAGTCACTTGTTGAAATATCT 57.698 33.333 0.00 0.00 35.39 1.98
2792 3848 9.996554 TCACTTGTTGAAATATCTAGAAAGACA 57.003 29.630 0.00 0.00 33.57 3.41
2810 3866 8.947115 AGAAAGACAAATATTTAAGAACGGAGG 58.053 33.333 0.00 0.00 0.00 4.30
2811 3867 7.625828 AAGACAAATATTTAAGAACGGAGGG 57.374 36.000 0.00 0.00 0.00 4.30
2812 3868 6.954232 AGACAAATATTTAAGAACGGAGGGA 58.046 36.000 0.00 0.00 0.00 4.20
2813 3869 7.048512 AGACAAATATTTAAGAACGGAGGGAG 58.951 38.462 0.00 0.00 0.00 4.30
2819 3875 5.904362 TTTAAGAACGGAGGGAGTAGTAC 57.096 43.478 0.00 0.00 0.00 2.73
2824 3880 2.454538 ACGGAGGGAGTAGTACTTTGG 58.545 52.381 0.00 0.00 0.00 3.28
2830 3886 5.424573 GGAGGGAGTAGTACTTTGGTTGTAT 59.575 44.000 0.00 0.00 0.00 2.29
2932 3988 7.033185 TCATCGAAACGATTCTTCAGTATCAA 58.967 34.615 3.81 0.00 44.59 2.57
2933 3989 7.544217 TCATCGAAACGATTCTTCAGTATCAAA 59.456 33.333 3.81 0.00 44.59 2.69
2949 4005 8.748412 TCAGTATCAAAAATCACCAAATTAGGG 58.252 33.333 0.00 0.00 0.00 3.53
2967 4023 3.185455 AGGGCCTACTTCATCTTGTCTT 58.815 45.455 2.82 0.00 0.00 3.01
2979 4035 7.389053 ACTTCATCTTGTCTTAACCTCATGTTC 59.611 37.037 0.00 0.00 38.42 3.18
2984 4040 6.811665 TCTTGTCTTAACCTCATGTTCGTATG 59.188 38.462 0.00 0.00 38.42 2.39
2991 4047 5.607939 ACCTCATGTTCGTATGGATGTTA 57.392 39.130 0.00 0.00 0.00 2.41
2993 4049 5.991606 ACCTCATGTTCGTATGGATGTTATG 59.008 40.000 0.00 0.00 0.00 1.90
2995 4051 6.483307 CCTCATGTTCGTATGGATGTTATGTT 59.517 38.462 0.00 0.00 0.00 2.71
2997 4053 6.821160 TCATGTTCGTATGGATGTTATGTTGT 59.179 34.615 0.00 0.00 0.00 3.32
3015 4071 4.082463 TGTTGTGTTTTTGAGTCTTGACCC 60.082 41.667 0.00 0.00 0.00 4.46
3020 4076 6.106003 GTGTTTTTGAGTCTTGACCCAAAAT 58.894 36.000 18.80 0.00 38.02 1.82
3027 4083 6.361433 TGAGTCTTGACCCAAAATAAAGTGA 58.639 36.000 0.00 0.00 0.00 3.41
3051 4107 4.280677 CCAGAACCATTTTTAGAGGCACAA 59.719 41.667 0.00 0.00 0.00 3.33
3098 4154 6.661805 ACAAATAAGGATATGTTTGTTCCCGT 59.338 34.615 0.00 0.00 40.70 5.28
3119 4175 9.398538 TCCCGTAAATAATAATAACAAGCAACT 57.601 29.630 0.00 0.00 0.00 3.16
3137 4608 4.989168 GCAACTTAATATGTACTCCCTCCG 59.011 45.833 0.00 0.00 0.00 4.63
3138 4609 5.221382 GCAACTTAATATGTACTCCCTCCGA 60.221 44.000 0.00 0.00 0.00 4.55
3140 4611 4.831710 ACTTAATATGTACTCCCTCCGACC 59.168 45.833 0.00 0.00 0.00 4.79
3141 4612 2.305858 ATATGTACTCCCTCCGACCC 57.694 55.000 0.00 0.00 0.00 4.46
3149 4620 4.687262 ACTCCCTCCGACCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
3154 4625 6.988725 TCCCTCCGACCCATAATATAAGATA 58.011 40.000 0.00 0.00 0.00 1.98
3156 4627 7.343833 TCCCTCCGACCCATAATATAAGATAAC 59.656 40.741 0.00 0.00 0.00 1.89
3157 4628 7.201145 CCTCCGACCCATAATATAAGATAACG 58.799 42.308 0.00 0.00 0.00 3.18
3158 4629 7.067859 CCTCCGACCCATAATATAAGATAACGA 59.932 40.741 0.00 0.00 0.00 3.85
3159 4630 7.765307 TCCGACCCATAATATAAGATAACGAC 58.235 38.462 0.00 0.00 0.00 4.34
3160 4631 7.394077 TCCGACCCATAATATAAGATAACGACA 59.606 37.037 0.00 0.00 0.00 4.35
3161 4632 7.701078 CCGACCCATAATATAAGATAACGACAG 59.299 40.741 0.00 0.00 0.00 3.51
3163 4634 9.790389 GACCCATAATATAAGATAACGACAGAG 57.210 37.037 0.00 0.00 0.00 3.35
3165 4636 8.198109 CCCATAATATAAGATAACGACAGAGGG 58.802 40.741 0.00 0.00 0.00 4.30
3166 4637 8.967918 CCATAATATAAGATAACGACAGAGGGA 58.032 37.037 0.00 0.00 0.00 4.20
3183 4698 4.080863 AGAGGGAGTACATGTTTGATGGTC 60.081 45.833 2.30 0.00 0.00 4.02
3184 4699 3.846588 AGGGAGTACATGTTTGATGGTCT 59.153 43.478 2.30 0.00 0.00 3.85
3185 4700 4.080863 AGGGAGTACATGTTTGATGGTCTC 60.081 45.833 2.30 0.38 0.00 3.36
3186 4701 4.080863 GGGAGTACATGTTTGATGGTCTCT 60.081 45.833 2.30 0.00 0.00 3.10
3187 4702 5.112686 GGAGTACATGTTTGATGGTCTCTC 58.887 45.833 2.30 0.00 0.00 3.20
3188 4703 5.105146 GGAGTACATGTTTGATGGTCTCTCT 60.105 44.000 2.30 0.00 0.00 3.10
3189 4704 5.728471 AGTACATGTTTGATGGTCTCTCTG 58.272 41.667 2.30 0.00 0.00 3.35
3190 4705 4.897509 ACATGTTTGATGGTCTCTCTGA 57.102 40.909 0.00 0.00 0.00 3.27
3191 4706 4.829968 ACATGTTTGATGGTCTCTCTGAG 58.170 43.478 0.00 0.00 0.00 3.35
3192 4707 3.969287 TGTTTGATGGTCTCTCTGAGG 57.031 47.619 4.59 0.00 0.00 3.86
3193 4708 2.027745 TGTTTGATGGTCTCTCTGAGGC 60.028 50.000 4.59 0.00 32.92 4.70
3198 4713 4.390341 GTCTCTCTGAGGCCCCAT 57.610 61.111 0.00 0.00 0.00 4.00
3199 4714 3.541224 GTCTCTCTGAGGCCCCATA 57.459 57.895 0.00 0.00 0.00 2.74
3200 4715 1.337118 GTCTCTCTGAGGCCCCATAG 58.663 60.000 0.00 0.00 0.00 2.23
3201 4716 0.470833 TCTCTCTGAGGCCCCATAGC 60.471 60.000 0.00 0.00 0.00 2.97
3202 4717 0.471591 CTCTCTGAGGCCCCATAGCT 60.472 60.000 0.00 0.00 0.00 3.32
3203 4718 0.762082 TCTCTGAGGCCCCATAGCTG 60.762 60.000 0.00 0.00 0.00 4.24
3220 4735 4.403976 GCGCCTAGCTCACACTAC 57.596 61.111 0.00 0.00 44.04 2.73
3254 4788 2.743928 CACCCAGCACCGCTTCTC 60.744 66.667 0.00 0.00 36.40 2.87
3264 4798 1.670811 CACCGCTTCTCTCTCTCTCTC 59.329 57.143 0.00 0.00 0.00 3.20
3265 4799 1.559682 ACCGCTTCTCTCTCTCTCTCT 59.440 52.381 0.00 0.00 0.00 3.10
3267 4801 2.158900 CCGCTTCTCTCTCTCTCTCTCT 60.159 54.545 0.00 0.00 0.00 3.10
3268 4802 3.126831 CGCTTCTCTCTCTCTCTCTCTC 58.873 54.545 0.00 0.00 0.00 3.20
3270 4804 4.376146 GCTTCTCTCTCTCTCTCTCTCTC 58.624 52.174 0.00 0.00 0.00 3.20
3271 4805 4.100808 GCTTCTCTCTCTCTCTCTCTCTCT 59.899 50.000 0.00 0.00 0.00 3.10
3272 4806 5.738783 GCTTCTCTCTCTCTCTCTCTCTCTC 60.739 52.000 0.00 0.00 0.00 3.20
3274 4808 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
3275 4809 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
3276 4810 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
3277 4811 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
3278 4812 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
3279 4813 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
3280 4814 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
3281 4815 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
3282 4816 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
3283 4817 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
3284 4818 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
3285 4819 4.871822 TCTCTCTCTCTCTCTCTCTCTCA 58.128 47.826 0.00 0.00 0.00 3.27
3286 4820 5.272402 TCTCTCTCTCTCTCTCTCTCTCAA 58.728 45.833 0.00 0.00 0.00 3.02
3288 4822 7.069344 TCTCTCTCTCTCTCTCTCTCTCAATA 58.931 42.308 0.00 0.00 0.00 1.90
3289 4823 7.014711 TCTCTCTCTCTCTCTCTCTCTCAATAC 59.985 44.444 0.00 0.00 0.00 1.89
3290 4824 6.611236 TCTCTCTCTCTCTCTCTCTCAATACA 59.389 42.308 0.00 0.00 0.00 2.29
3291 4825 7.125659 TCTCTCTCTCTCTCTCTCTCAATACAA 59.874 40.741 0.00 0.00 0.00 2.41
3292 4826 7.629157 TCTCTCTCTCTCTCTCTCAATACAAA 58.371 38.462 0.00 0.00 0.00 2.83
3293 4827 8.274322 TCTCTCTCTCTCTCTCTCAATACAAAT 58.726 37.037 0.00 0.00 0.00 2.32
3294 4828 9.559732 CTCTCTCTCTCTCTCTCAATACAAATA 57.440 37.037 0.00 0.00 0.00 1.40
3295 4829 9.337396 TCTCTCTCTCTCTCTCAATACAAATAC 57.663 37.037 0.00 0.00 0.00 1.89
3296 4830 8.148807 TCTCTCTCTCTCTCAATACAAATACG 57.851 38.462 0.00 0.00 0.00 3.06
3297 4831 7.227711 TCTCTCTCTCTCTCAATACAAATACGG 59.772 40.741 0.00 0.00 0.00 4.02
3298 4832 6.829298 TCTCTCTCTCTCAATACAAATACGGT 59.171 38.462 0.00 0.00 0.00 4.83
3299 4833 7.012515 TCTCTCTCTCTCAATACAAATACGGTC 59.987 40.741 0.00 0.00 0.00 4.79
3300 4834 6.829298 TCTCTCTCTCAATACAAATACGGTCT 59.171 38.462 0.00 0.00 0.00 3.85
3301 4835 7.339721 TCTCTCTCTCAATACAAATACGGTCTT 59.660 37.037 0.00 0.00 0.00 3.01
3302 4836 7.837863 TCTCTCTCAATACAAATACGGTCTTT 58.162 34.615 0.00 0.00 0.00 2.52
3303 4837 8.311836 TCTCTCTCAATACAAATACGGTCTTTT 58.688 33.333 0.00 0.00 0.00 2.27
3304 4838 9.582431 CTCTCTCAATACAAATACGGTCTTTTA 57.418 33.333 0.00 0.00 0.00 1.52
3305 4839 9.362539 TCTCTCAATACAAATACGGTCTTTTAC 57.637 33.333 0.00 0.00 0.00 2.01
3306 4840 9.146984 CTCTCAATACAAATACGGTCTTTTACA 57.853 33.333 0.00 0.00 0.00 2.41
3307 4841 8.928733 TCTCAATACAAATACGGTCTTTTACAC 58.071 33.333 0.00 0.00 0.00 2.90
3331 4865 7.754924 CACATGGGTACAACAAAATAGATGAAC 59.245 37.037 0.00 0.00 0.00 3.18
3343 4877 7.013846 ACAAAATAGATGAACGGAGAAAACCAA 59.986 33.333 0.00 0.00 0.00 3.67
3346 4880 3.758554 AGATGAACGGAGAAAACCAATGG 59.241 43.478 0.00 0.00 0.00 3.16
3351 4885 5.356751 TGAACGGAGAAAACCAATGGATATG 59.643 40.000 6.16 0.00 0.00 1.78
3352 4886 5.110814 ACGGAGAAAACCAATGGATATGA 57.889 39.130 6.16 0.00 0.00 2.15
3380 4914 9.733219 AAAATAAAGGCATGAACAAAACAAATG 57.267 25.926 0.00 0.00 0.00 2.32
3383 4917 5.280654 AGGCATGAACAAAACAAATGAGT 57.719 34.783 0.00 0.00 0.00 3.41
3390 4924 9.467258 CATGAACAAAACAAATGAGTCATAACT 57.533 29.630 5.94 0.00 38.88 2.24
3391 4925 8.854979 TGAACAAAACAAATGAGTCATAACTG 57.145 30.769 5.94 7.09 35.28 3.16
3395 4929 8.849168 ACAAAACAAATGAGTCATAACTGATGA 58.151 29.630 5.94 0.00 42.55 2.92
3410 4944 0.107312 GATGAGCATGTGTGGCCTCT 60.107 55.000 3.32 0.00 0.00 3.69
3425 4959 4.278419 GTGGCCTCTTGTTGTAACTGAAAT 59.722 41.667 3.32 0.00 0.00 2.17
3426 4960 4.892934 TGGCCTCTTGTTGTAACTGAAATT 59.107 37.500 3.32 0.00 0.00 1.82
3429 4963 6.145535 GCCTCTTGTTGTAACTGAAATTGAG 58.854 40.000 0.00 0.00 0.00 3.02
3438 4972 5.587043 TGTAACTGAAATTGAGGTTGTTCGT 59.413 36.000 0.00 0.00 0.00 3.85
3442 4976 4.915704 TGAAATTGAGGTTGTTCGTTCAC 58.084 39.130 0.00 0.00 0.00 3.18
3446 4980 1.137513 GAGGTTGTTCGTTCACTCGG 58.862 55.000 0.00 0.00 0.00 4.63
3450 4984 2.049802 GTTCGTTCACTCGGCCGA 60.050 61.111 29.03 29.03 0.00 5.54
3462 4998 1.444553 CGGCCGAGTTCAGTCTGTC 60.445 63.158 24.07 0.00 0.00 3.51
3471 5007 5.639506 CCGAGTTCAGTCTGTCAAATAATGT 59.360 40.000 0.00 0.00 0.00 2.71
3491 5027 7.807977 AATGTGGGTATGTTTAGATTGCTAG 57.192 36.000 0.00 0.00 0.00 3.42
3493 5029 4.211374 GTGGGTATGTTTAGATTGCTAGCG 59.789 45.833 10.77 0.00 0.00 4.26
3510 5046 5.303589 TGCTAGCGAATACTACCTTACCAAT 59.696 40.000 10.77 0.00 0.00 3.16
3519 5055 4.338012 ACTACCTTACCAATTTTTCGGGG 58.662 43.478 0.00 0.00 0.00 5.73
3520 5056 2.531771 ACCTTACCAATTTTTCGGGGG 58.468 47.619 0.00 0.00 0.00 5.40
3523 5059 2.973983 TACCAATTTTTCGGGGGTGA 57.026 45.000 0.00 0.00 33.14 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 50 1.270625 ACTTGATTCCGAGCGGTCAAA 60.271 47.619 15.89 8.59 32.35 2.69
62 64 4.226427 TGCTAGAGCCAATGAACTTGAT 57.774 40.909 0.00 0.00 41.18 2.57
101 103 4.106925 GAGGGGGTGGCAGAGCAG 62.107 72.222 0.00 0.00 0.00 4.24
148 150 1.660607 CAACATCCATCGAACTCCACG 59.339 52.381 0.00 0.00 0.00 4.94
153 155 1.645034 CGCTCAACATCCATCGAACT 58.355 50.000 0.00 0.00 0.00 3.01
174 176 2.286127 TATCGTCGCCGCCATGTCAA 62.286 55.000 0.00 0.00 0.00 3.18
255 257 0.238289 CTGACACCGCAAATCACCAC 59.762 55.000 0.00 0.00 0.00 4.16
258 260 1.453155 ATCCTGACACCGCAAATCAC 58.547 50.000 0.00 0.00 0.00 3.06
311 313 2.446036 ACTACGGCCCTCCCCATC 60.446 66.667 0.00 0.00 0.00 3.51
312 314 2.768344 CACTACGGCCCTCCCCAT 60.768 66.667 0.00 0.00 0.00 4.00
313 315 4.326227 ACACTACGGCCCTCCCCA 62.326 66.667 0.00 0.00 0.00 4.96
314 316 3.782443 CACACTACGGCCCTCCCC 61.782 72.222 0.00 0.00 0.00 4.81
315 317 4.468689 GCACACTACGGCCCTCCC 62.469 72.222 0.00 0.00 0.00 4.30
389 391 6.230472 TCGCTGAATGCCACACTATATTAAT 58.770 36.000 0.00 0.00 38.78 1.40
404 406 5.475273 ACTACATGTTGATTCGCTGAATG 57.525 39.130 14.37 0.00 31.89 2.67
417 419 5.339200 CCTCCTAACCATCCAACTACATGTT 60.339 44.000 2.30 0.00 39.92 2.71
419 421 4.408921 TCCTCCTAACCATCCAACTACATG 59.591 45.833 0.00 0.00 0.00 3.21
420 422 4.409247 GTCCTCCTAACCATCCAACTACAT 59.591 45.833 0.00 0.00 0.00 2.29
422 424 3.773119 TGTCCTCCTAACCATCCAACTAC 59.227 47.826 0.00 0.00 0.00 2.73
424 426 2.840651 CTGTCCTCCTAACCATCCAACT 59.159 50.000 0.00 0.00 0.00 3.16
448 450 5.245531 TGAACTTTGGTGGACTGATGATAC 58.754 41.667 0.00 0.00 0.00 2.24
453 455 2.443255 ACCTGAACTTTGGTGGACTGAT 59.557 45.455 0.00 0.00 34.90 2.90
456 458 3.046374 AGTACCTGAACTTTGGTGGACT 58.954 45.455 0.00 0.00 37.74 3.85
458 460 4.485875 TCTAGTACCTGAACTTTGGTGGA 58.514 43.478 0.00 0.00 37.74 4.02
461 463 6.238648 CCAAATCTAGTACCTGAACTTTGGT 58.761 40.000 15.54 0.00 40.12 3.67
462 464 5.123979 GCCAAATCTAGTACCTGAACTTTGG 59.876 44.000 17.61 17.61 36.99 3.28
463 465 5.705441 TGCCAAATCTAGTACCTGAACTTTG 59.295 40.000 0.00 0.00 0.00 2.77
464 466 5.876357 TGCCAAATCTAGTACCTGAACTTT 58.124 37.500 0.00 0.00 0.00 2.66
465 467 5.499004 TGCCAAATCTAGTACCTGAACTT 57.501 39.130 0.00 0.00 0.00 2.66
466 468 5.700402 ATGCCAAATCTAGTACCTGAACT 57.300 39.130 0.00 0.00 0.00 3.01
467 469 7.011482 CACTAATGCCAAATCTAGTACCTGAAC 59.989 40.741 0.00 0.00 0.00 3.18
468 470 7.047891 CACTAATGCCAAATCTAGTACCTGAA 58.952 38.462 0.00 0.00 0.00 3.02
469 471 6.582636 CACTAATGCCAAATCTAGTACCTGA 58.417 40.000 0.00 0.00 0.00 3.86
470 472 5.237344 GCACTAATGCCAAATCTAGTACCTG 59.763 44.000 0.00 0.00 46.97 4.00
471 473 5.368989 GCACTAATGCCAAATCTAGTACCT 58.631 41.667 0.00 0.00 46.97 3.08
472 474 5.674933 GCACTAATGCCAAATCTAGTACC 57.325 43.478 0.00 0.00 46.97 3.34
486 488 4.973396 TCAGAAAAATGCGAGCACTAATG 58.027 39.130 0.00 0.00 0.00 1.90
487 489 5.627499 TTCAGAAAAATGCGAGCACTAAT 57.373 34.783 0.00 0.00 0.00 1.73
488 490 5.627499 ATTCAGAAAAATGCGAGCACTAA 57.373 34.783 0.00 0.00 0.00 2.24
489 491 5.627499 AATTCAGAAAAATGCGAGCACTA 57.373 34.783 0.00 0.00 0.00 2.74
490 492 4.510038 AATTCAGAAAAATGCGAGCACT 57.490 36.364 0.00 0.00 0.00 4.40
491 493 6.875926 ATAAATTCAGAAAAATGCGAGCAC 57.124 33.333 0.00 0.00 0.00 4.40
492 494 7.598118 TGAAATAAATTCAGAAAAATGCGAGCA 59.402 29.630 0.00 0.00 43.08 4.26
493 495 7.952339 TGAAATAAATTCAGAAAAATGCGAGC 58.048 30.769 0.00 0.00 43.08 5.03
506 508 5.167845 GCCGAAAAGCCTGAAATAAATTCA 58.832 37.500 0.00 0.00 45.71 2.57
507 509 5.167845 TGCCGAAAAGCCTGAAATAAATTC 58.832 37.500 0.00 0.00 38.60 2.17
508 510 5.146010 TGCCGAAAAGCCTGAAATAAATT 57.854 34.783 0.00 0.00 0.00 1.82
509 511 4.799564 TGCCGAAAAGCCTGAAATAAAT 57.200 36.364 0.00 0.00 0.00 1.40
510 512 4.592485 TTGCCGAAAAGCCTGAAATAAA 57.408 36.364 0.00 0.00 0.00 1.40
511 513 4.021544 ACATTGCCGAAAAGCCTGAAATAA 60.022 37.500 0.00 0.00 0.00 1.40
512 514 3.509575 ACATTGCCGAAAAGCCTGAAATA 59.490 39.130 0.00 0.00 0.00 1.40
513 515 2.299867 ACATTGCCGAAAAGCCTGAAAT 59.700 40.909 0.00 0.00 0.00 2.17
514 516 1.686052 ACATTGCCGAAAAGCCTGAAA 59.314 42.857 0.00 0.00 0.00 2.69
515 517 1.327303 ACATTGCCGAAAAGCCTGAA 58.673 45.000 0.00 0.00 0.00 3.02
516 518 1.269448 GAACATTGCCGAAAAGCCTGA 59.731 47.619 0.00 0.00 0.00 3.86
517 519 1.701704 GAACATTGCCGAAAAGCCTG 58.298 50.000 0.00 0.00 0.00 4.85
518 520 0.240945 CGAACATTGCCGAAAAGCCT 59.759 50.000 0.00 0.00 0.00 4.58
519 521 0.039527 ACGAACATTGCCGAAAAGCC 60.040 50.000 6.13 0.00 0.00 4.35
520 522 1.713932 GAACGAACATTGCCGAAAAGC 59.286 47.619 6.13 0.00 0.00 3.51
521 523 2.993545 TGAACGAACATTGCCGAAAAG 58.006 42.857 6.13 0.00 0.00 2.27
522 524 3.422417 TTGAACGAACATTGCCGAAAA 57.578 38.095 6.13 0.00 0.00 2.29
525 527 1.198867 CCATTGAACGAACATTGCCGA 59.801 47.619 6.13 0.00 0.00 5.54
533 535 5.613358 ATGTCTTCTTCCATTGAACGAAC 57.387 39.130 0.00 0.00 0.00 3.95
536 538 5.858581 GGAAAATGTCTTCTTCCATTGAACG 59.141 40.000 0.00 0.00 38.80 3.95
542 544 4.938226 GTCGAGGAAAATGTCTTCTTCCAT 59.062 41.667 3.12 0.00 41.00 3.41
546 548 5.048224 TCGTAGTCGAGGAAAATGTCTTCTT 60.048 40.000 0.00 0.00 41.35 2.52
549 551 4.778534 TCGTAGTCGAGGAAAATGTCTT 57.221 40.909 0.00 0.00 41.35 3.01
591 593 8.840321 CCAAGTTGGTATATCATCTTAAGGTTG 58.160 37.037 14.21 1.48 31.35 3.77
611 613 2.207924 ACCGCCGAGAGACCAAGTT 61.208 57.895 0.00 0.00 0.00 2.66
616 618 4.500116 GAGCACCGCCGAGAGACC 62.500 72.222 0.00 0.00 0.00 3.85
626 628 1.472662 CCCTACCCCTATGAGCACCG 61.473 65.000 0.00 0.00 0.00 4.94
637 639 4.519437 GCGCGTACACCCTACCCC 62.519 72.222 8.43 0.00 0.00 4.95
638 640 4.860261 CGCGCGTACACCCTACCC 62.860 72.222 24.19 0.00 0.00 3.69
649 651 1.274476 CTTGTAAACACACGCGCGT 59.726 52.632 32.73 32.73 0.00 6.01
652 654 0.041663 CACCCTTGTAAACACACGCG 60.042 55.000 3.53 3.53 0.00 6.01
664 666 2.352651 CACGAGCATACATTCACCCTTG 59.647 50.000 0.00 0.00 0.00 3.61
666 668 1.555075 ACACGAGCATACATTCACCCT 59.445 47.619 0.00 0.00 0.00 4.34
673 675 6.763135 AGTCAATCAAATACACGAGCATACAT 59.237 34.615 0.00 0.00 0.00 2.29
702 704 6.003234 TCAAACACACGTCTCAAAGAAAAA 57.997 33.333 0.00 0.00 0.00 1.94
705 707 4.092821 CACTCAAACACACGTCTCAAAGAA 59.907 41.667 0.00 0.00 0.00 2.52
707 709 3.616821 TCACTCAAACACACGTCTCAAAG 59.383 43.478 0.00 0.00 0.00 2.77
708 710 3.369756 GTCACTCAAACACACGTCTCAAA 59.630 43.478 0.00 0.00 0.00 2.69
710 712 2.165641 AGTCACTCAAACACACGTCTCA 59.834 45.455 0.00 0.00 0.00 3.27
712 714 2.961526 AGTCACTCAAACACACGTCT 57.038 45.000 0.00 0.00 0.00 4.18
713 715 3.124636 ACAAAGTCACTCAAACACACGTC 59.875 43.478 0.00 0.00 0.00 4.34
714 716 3.071479 ACAAAGTCACTCAAACACACGT 58.929 40.909 0.00 0.00 0.00 4.49
716 718 5.041951 TGAACAAAGTCACTCAAACACAC 57.958 39.130 0.00 0.00 0.00 3.82
717 719 5.697473 TTGAACAAAGTCACTCAAACACA 57.303 34.783 0.00 0.00 0.00 3.72
718 720 7.401484 TTTTTGAACAAAGTCACTCAAACAC 57.599 32.000 0.46 0.00 37.48 3.32
767 770 6.479331 GGAGAGTAAGTGACGTTTTCTTTTCT 59.521 38.462 0.00 2.80 0.00 2.52
768 771 6.561717 CGGAGAGTAAGTGACGTTTTCTTTTC 60.562 42.308 0.00 0.00 0.00 2.29
769 772 5.233689 CGGAGAGTAAGTGACGTTTTCTTTT 59.766 40.000 0.00 0.00 0.00 2.27
770 773 4.743644 CGGAGAGTAAGTGACGTTTTCTTT 59.256 41.667 0.00 0.00 0.00 2.52
771 774 4.296690 CGGAGAGTAAGTGACGTTTTCTT 58.703 43.478 0.00 0.00 0.00 2.52
772 775 3.305199 CCGGAGAGTAAGTGACGTTTTCT 60.305 47.826 0.00 0.00 0.00 2.52
773 776 2.985139 CCGGAGAGTAAGTGACGTTTTC 59.015 50.000 0.00 0.00 0.00 2.29
806 809 0.782384 CTTTGTCGTTCGTTCCTCGG 59.218 55.000 0.00 0.00 40.32 4.63
807 810 0.782384 CCTTTGTCGTTCGTTCCTCG 59.218 55.000 0.00 0.00 41.41 4.63
855 859 1.918868 GCACGGGATTTTGGACGACC 61.919 60.000 0.00 0.00 0.00 4.79
863 867 2.711542 AGAGAAATCGCACGGGATTTT 58.288 42.857 19.30 11.53 44.41 1.82
876 880 1.519455 CGCGCGGGAGAAGAGAAAT 60.519 57.895 24.84 0.00 0.00 2.17
964 968 2.796557 TCGGAGGGCTAGATGATGTAG 58.203 52.381 0.00 0.00 0.00 2.74
967 971 1.480137 GGATCGGAGGGCTAGATGATG 59.520 57.143 0.00 0.00 0.00 3.07
989 993 4.931601 TCGCCATCAGCATATATTGACTTC 59.068 41.667 0.00 0.00 44.04 3.01
1095 1099 2.993264 GGGTCGGGGAAGTCGTCA 60.993 66.667 0.00 0.00 0.00 4.35
1227 1231 1.592223 GTTAGGCTGAGCGACACCT 59.408 57.895 0.00 0.00 35.43 4.00
1254 1258 0.541998 TCGATGGGTCACTGTGGACT 60.542 55.000 8.11 0.00 37.91 3.85
1292 1296 1.081242 CCGCTGCAATCCAACACAC 60.081 57.895 0.00 0.00 0.00 3.82
1561 1565 8.661257 TGTAAATTGATGTTGAACGGTATGTAG 58.339 33.333 0.00 0.00 0.00 2.74
1799 1805 2.812542 CTTCATCGTCGTGGTCGCCA 62.813 60.000 0.00 0.00 36.96 5.69
1821 1827 2.034879 CACCATTTCTCGCCGCTGT 61.035 57.895 0.00 0.00 0.00 4.40
1854 1860 1.660575 CAGCAAAGACGTCGACGGT 60.661 57.895 37.89 24.74 44.95 4.83
1892 1898 1.155042 CTGGCTCTGTGTTTCTCTGC 58.845 55.000 0.00 0.00 0.00 4.26
1926 1932 4.324402 CCGAATCGAAATCCTTTGCAAAAG 59.676 41.667 13.84 7.45 0.00 2.27
1929 1935 2.817258 ACCGAATCGAAATCCTTTGCAA 59.183 40.909 3.36 0.00 0.00 4.08
2042 2048 0.467290 GGAAGGGTTGTGGCTGAACA 60.467 55.000 0.00 0.00 0.00 3.18
2141 2147 5.982356 TGGTACGTACATACACTAGAGTCT 58.018 41.667 26.02 0.00 0.00 3.24
2163 2169 7.873719 TCCCAATAGTGTTACAATGGTATTG 57.126 36.000 0.00 3.87 0.00 1.90
2298 2308 3.581332 AGATTCCTTTCAGAACGGTGGTA 59.419 43.478 5.61 0.00 0.00 3.25
2334 2344 0.663153 GATGCGGCCATCTTTGTACC 59.337 55.000 2.24 0.00 43.62 3.34
2599 3655 4.634703 TGGGCACAACGGATGCGT 62.635 61.111 6.39 6.39 44.37 5.24
2607 3663 6.862209 TCTCACATATAATTTTGGGCACAAC 58.138 36.000 0.00 0.00 36.06 3.32
2637 3693 9.760077 ACGAAGGGAGTATATGTTTACAAATAG 57.240 33.333 0.00 0.00 0.00 1.73
2652 3708 7.854337 ACAATTATTTAGGAACGAAGGGAGTA 58.146 34.615 0.00 0.00 0.00 2.59
2653 3709 6.718294 ACAATTATTTAGGAACGAAGGGAGT 58.282 36.000 0.00 0.00 0.00 3.85
2654 3710 7.048512 AGACAATTATTTAGGAACGAAGGGAG 58.951 38.462 0.00 0.00 0.00 4.30
2655 3711 6.954232 AGACAATTATTTAGGAACGAAGGGA 58.046 36.000 0.00 0.00 0.00 4.20
2656 3712 7.625828 AAGACAATTATTTAGGAACGAAGGG 57.374 36.000 0.00 0.00 0.00 3.95
2657 3713 8.947115 AGAAAGACAATTATTTAGGAACGAAGG 58.053 33.333 0.00 0.00 0.00 3.46
2677 3733 7.336931 GGTAGCCATTTGAAATGTCTAGAAAGA 59.663 37.037 15.93 0.00 0.00 2.52
2678 3734 7.121168 TGGTAGCCATTTGAAATGTCTAGAAAG 59.879 37.037 15.93 0.50 0.00 2.62
2679 3735 6.945435 TGGTAGCCATTTGAAATGTCTAGAAA 59.055 34.615 15.93 0.00 0.00 2.52
2680 3736 6.374333 GTGGTAGCCATTTGAAATGTCTAGAA 59.626 38.462 15.93 2.55 35.28 2.10
2681 3737 5.880332 GTGGTAGCCATTTGAAATGTCTAGA 59.120 40.000 15.93 1.26 35.28 2.43
2682 3738 5.647658 TGTGGTAGCCATTTGAAATGTCTAG 59.352 40.000 15.93 2.82 35.28 2.43
2683 3739 5.565509 TGTGGTAGCCATTTGAAATGTCTA 58.434 37.500 15.93 10.48 35.28 2.59
2684 3740 4.406456 TGTGGTAGCCATTTGAAATGTCT 58.594 39.130 15.93 11.47 35.28 3.41
2685 3741 4.782019 TGTGGTAGCCATTTGAAATGTC 57.218 40.909 15.93 3.96 35.28 3.06
2686 3742 4.160252 GGATGTGGTAGCCATTTGAAATGT 59.840 41.667 15.93 2.12 35.28 2.71
2687 3743 4.685924 GGATGTGGTAGCCATTTGAAATG 58.314 43.478 10.84 10.84 35.28 2.32
2688 3744 3.381272 CGGATGTGGTAGCCATTTGAAAT 59.619 43.478 0.00 0.00 35.28 2.17
2689 3745 2.752354 CGGATGTGGTAGCCATTTGAAA 59.248 45.455 0.00 0.00 35.28 2.69
2690 3746 2.364632 CGGATGTGGTAGCCATTTGAA 58.635 47.619 0.00 0.00 35.28 2.69
2691 3747 1.408127 CCGGATGTGGTAGCCATTTGA 60.408 52.381 0.00 0.00 35.28 2.69
2692 3748 1.024271 CCGGATGTGGTAGCCATTTG 58.976 55.000 0.00 0.00 35.28 2.32
2693 3749 0.916086 TCCGGATGTGGTAGCCATTT 59.084 50.000 0.00 0.00 35.28 2.32
2694 3750 1.140312 ATCCGGATGTGGTAGCCATT 58.860 50.000 18.33 0.00 35.28 3.16
2695 3751 0.397941 CATCCGGATGTGGTAGCCAT 59.602 55.000 32.39 0.00 35.28 4.40
2696 3752 1.829456 CATCCGGATGTGGTAGCCA 59.171 57.895 32.39 0.00 33.22 4.75
2697 3753 4.779475 CATCCGGATGTGGTAGCC 57.221 61.111 32.39 0.00 34.23 3.93
2705 3761 8.777865 AAAATATGTCTACATACATCCGGATG 57.222 34.615 37.23 37.23 41.15 3.51
2707 3763 9.304335 TCTAAAATATGTCTACATACATCCGGA 57.696 33.333 6.61 6.61 41.15 5.14
2708 3764 9.923143 TTCTAAAATATGTCTACATACATCCGG 57.077 33.333 4.98 0.00 41.15 5.14
2742 3798 9.863845 TGACTACATACGAAATAAAATGAGTGA 57.136 29.630 0.00 0.00 0.00 3.41
2743 3799 9.901724 GTGACTACATACGAAATAAAATGAGTG 57.098 33.333 0.00 0.00 0.00 3.51
2744 3800 9.871238 AGTGACTACATACGAAATAAAATGAGT 57.129 29.630 0.00 0.00 0.00 3.41
2750 3806 9.478768 TCAACAAGTGACTACATACGAAATAAA 57.521 29.630 0.00 0.00 0.00 1.40
2751 3807 9.478768 TTCAACAAGTGACTACATACGAAATAA 57.521 29.630 0.00 0.00 35.39 1.40
2752 3808 9.478768 TTTCAACAAGTGACTACATACGAAATA 57.521 29.630 0.00 0.00 35.39 1.40
2753 3809 7.956420 TTCAACAAGTGACTACATACGAAAT 57.044 32.000 0.00 0.00 35.39 2.17
2754 3810 7.773864 TTTCAACAAGTGACTACATACGAAA 57.226 32.000 0.00 0.00 35.39 3.46
2755 3811 7.956420 ATTTCAACAAGTGACTACATACGAA 57.044 32.000 0.00 0.00 35.39 3.85
2756 3812 9.297586 GATATTTCAACAAGTGACTACATACGA 57.702 33.333 0.00 0.00 35.39 3.43
2757 3813 9.302345 AGATATTTCAACAAGTGACTACATACG 57.698 33.333 0.00 0.00 35.39 3.06
2766 3822 9.996554 TGTCTTTCTAGATATTTCAACAAGTGA 57.003 29.630 0.00 0.00 31.86 3.41
2784 3840 8.947115 CCTCCGTTCTTAAATATTTGTCTTTCT 58.053 33.333 11.05 0.00 0.00 2.52
2785 3841 8.182227 CCCTCCGTTCTTAAATATTTGTCTTTC 58.818 37.037 11.05 0.00 0.00 2.62
2786 3842 7.886446 TCCCTCCGTTCTTAAATATTTGTCTTT 59.114 33.333 11.05 0.00 0.00 2.52
2787 3843 7.399634 TCCCTCCGTTCTTAAATATTTGTCTT 58.600 34.615 11.05 0.00 0.00 3.01
2788 3844 6.954232 TCCCTCCGTTCTTAAATATTTGTCT 58.046 36.000 11.05 0.00 0.00 3.41
2789 3845 6.822170 ACTCCCTCCGTTCTTAAATATTTGTC 59.178 38.462 11.05 0.00 0.00 3.18
2790 3846 6.718294 ACTCCCTCCGTTCTTAAATATTTGT 58.282 36.000 11.05 0.00 0.00 2.83
2791 3847 7.985752 ACTACTCCCTCCGTTCTTAAATATTTG 59.014 37.037 11.05 0.00 0.00 2.32
2792 3848 8.087303 ACTACTCCCTCCGTTCTTAAATATTT 57.913 34.615 5.89 5.89 0.00 1.40
2793 3849 7.672122 ACTACTCCCTCCGTTCTTAAATATT 57.328 36.000 0.00 0.00 0.00 1.28
2794 3850 8.003629 AGTACTACTCCCTCCGTTCTTAAATAT 58.996 37.037 0.00 0.00 0.00 1.28
2795 3851 7.349598 AGTACTACTCCCTCCGTTCTTAAATA 58.650 38.462 0.00 0.00 0.00 1.40
2796 3852 6.193504 AGTACTACTCCCTCCGTTCTTAAAT 58.806 40.000 0.00 0.00 0.00 1.40
2797 3853 5.574188 AGTACTACTCCCTCCGTTCTTAAA 58.426 41.667 0.00 0.00 0.00 1.52
2798 3854 5.184892 AGTACTACTCCCTCCGTTCTTAA 57.815 43.478 0.00 0.00 0.00 1.85
2799 3855 4.851639 AGTACTACTCCCTCCGTTCTTA 57.148 45.455 0.00 0.00 0.00 2.10
2800 3856 3.735720 AGTACTACTCCCTCCGTTCTT 57.264 47.619 0.00 0.00 0.00 2.52
2801 3857 3.735720 AAGTACTACTCCCTCCGTTCT 57.264 47.619 0.00 0.00 0.00 3.01
2802 3858 3.119209 CCAAAGTACTACTCCCTCCGTTC 60.119 52.174 0.00 0.00 0.00 3.95
2803 3859 2.830321 CCAAAGTACTACTCCCTCCGTT 59.170 50.000 0.00 0.00 0.00 4.44
2804 3860 2.225217 ACCAAAGTACTACTCCCTCCGT 60.225 50.000 0.00 0.00 0.00 4.69
2805 3861 2.454538 ACCAAAGTACTACTCCCTCCG 58.545 52.381 0.00 0.00 0.00 4.63
2806 3862 3.581770 ACAACCAAAGTACTACTCCCTCC 59.418 47.826 0.00 0.00 0.00 4.30
2807 3863 4.886496 ACAACCAAAGTACTACTCCCTC 57.114 45.455 0.00 0.00 0.00 4.30
2808 3864 9.893975 ATATATACAACCAAAGTACTACTCCCT 57.106 33.333 0.00 0.00 0.00 4.20
2830 3886 8.978472 GTTCACATACCATTAGCCTCCTATATA 58.022 37.037 0.00 0.00 0.00 0.86
2853 3909 6.329496 TGAAACAACAACAATCTCTTGGTTC 58.671 36.000 0.00 0.00 39.68 3.62
2899 3955 8.717821 TGAAGAATCGTTTCGATGAAAGTAAAT 58.282 29.630 5.43 0.00 46.30 1.40
2917 3973 9.912634 TTTGGTGATTTTTGATACTGAAGAATC 57.087 29.630 0.00 0.00 0.00 2.52
2932 3988 5.589831 AGTAGGCCCTAATTTGGTGATTTT 58.410 37.500 0.00 0.00 0.00 1.82
2933 3989 5.206905 AGTAGGCCCTAATTTGGTGATTT 57.793 39.130 0.00 0.00 0.00 2.17
2949 4005 5.735766 AGGTTAAGACAAGATGAAGTAGGC 58.264 41.667 0.00 0.00 0.00 3.93
2967 4023 5.607939 ACATCCATACGAACATGAGGTTA 57.392 39.130 0.00 0.00 40.63 2.85
2979 4035 7.805542 TCAAAAACACAACATAACATCCATACG 59.194 33.333 0.00 0.00 0.00 3.06
2984 4040 7.425606 AGACTCAAAAACACAACATAACATCC 58.574 34.615 0.00 0.00 0.00 3.51
2991 4047 5.394115 GGGTCAAGACTCAAAAACACAACAT 60.394 40.000 0.00 0.00 0.00 2.71
2993 4049 4.082463 TGGGTCAAGACTCAAAAACACAAC 60.082 41.667 0.00 0.00 39.18 3.32
2995 4051 3.691575 TGGGTCAAGACTCAAAAACACA 58.308 40.909 0.00 0.00 39.18 3.72
3015 4071 8.661352 AAAATGGTTCTGGTCACTTTATTTTG 57.339 30.769 0.00 0.00 0.00 2.44
3020 4076 7.447238 CCTCTAAAAATGGTTCTGGTCACTTTA 59.553 37.037 0.00 0.00 0.00 1.85
3027 4083 3.826729 GTGCCTCTAAAAATGGTTCTGGT 59.173 43.478 0.00 0.00 0.00 4.00
3078 4134 9.902684 TTATTTACGGGAACAAACATATCCTTA 57.097 29.630 0.00 0.00 33.61 2.69
3110 4166 6.958767 AGGGAGTACATATTAAGTTGCTTGT 58.041 36.000 0.00 0.00 0.00 3.16
3111 4167 6.483640 GGAGGGAGTACATATTAAGTTGCTTG 59.516 42.308 0.00 0.00 0.00 4.01
3114 4170 4.989168 CGGAGGGAGTACATATTAAGTTGC 59.011 45.833 0.00 0.00 0.00 4.17
3115 4171 6.214399 GTCGGAGGGAGTACATATTAAGTTG 58.786 44.000 0.00 0.00 0.00 3.16
3118 4174 4.220163 GGGTCGGAGGGAGTACATATTAAG 59.780 50.000 0.00 0.00 0.00 1.85
3119 4175 4.154942 GGGTCGGAGGGAGTACATATTAA 58.845 47.826 0.00 0.00 0.00 1.40
3120 4176 3.140707 TGGGTCGGAGGGAGTACATATTA 59.859 47.826 0.00 0.00 0.00 0.98
3121 4177 2.090943 TGGGTCGGAGGGAGTACATATT 60.091 50.000 0.00 0.00 0.00 1.28
3122 4178 1.502039 TGGGTCGGAGGGAGTACATAT 59.498 52.381 0.00 0.00 0.00 1.78
3123 4179 0.928505 TGGGTCGGAGGGAGTACATA 59.071 55.000 0.00 0.00 0.00 2.29
3124 4180 0.264955 ATGGGTCGGAGGGAGTACAT 59.735 55.000 0.00 0.00 0.00 2.29
3125 4181 0.928505 TATGGGTCGGAGGGAGTACA 59.071 55.000 0.00 0.00 0.00 2.90
3137 4608 9.790389 CTCTGTCGTTATCTTATATTATGGGTC 57.210 37.037 0.00 0.00 0.00 4.46
3138 4609 8.750298 CCTCTGTCGTTATCTTATATTATGGGT 58.250 37.037 0.00 0.00 0.00 4.51
3140 4611 8.967918 TCCCTCTGTCGTTATCTTATATTATGG 58.032 37.037 0.00 0.00 0.00 2.74
3149 4620 4.597004 TGTACTCCCTCTGTCGTTATCTT 58.403 43.478 0.00 0.00 0.00 2.40
3154 4625 2.526432 ACATGTACTCCCTCTGTCGTT 58.474 47.619 0.00 0.00 0.00 3.85
3156 4627 3.056821 TCAAACATGTACTCCCTCTGTCG 60.057 47.826 0.00 0.00 0.00 4.35
3157 4628 4.537135 TCAAACATGTACTCCCTCTGTC 57.463 45.455 0.00 0.00 0.00 3.51
3158 4629 4.323792 CCATCAAACATGTACTCCCTCTGT 60.324 45.833 0.00 0.00 0.00 3.41
3159 4630 4.194640 CCATCAAACATGTACTCCCTCTG 58.805 47.826 0.00 0.00 0.00 3.35
3160 4631 3.846588 ACCATCAAACATGTACTCCCTCT 59.153 43.478 0.00 0.00 0.00 3.69
3161 4632 4.080863 AGACCATCAAACATGTACTCCCTC 60.081 45.833 0.00 0.00 0.00 4.30
3163 4634 4.080863 AGAGACCATCAAACATGTACTCCC 60.081 45.833 0.00 0.00 0.00 4.30
3165 4636 5.809562 CAGAGAGACCATCAAACATGTACTC 59.190 44.000 0.00 0.00 0.00 2.59
3166 4637 5.481824 TCAGAGAGACCATCAAACATGTACT 59.518 40.000 0.00 0.00 0.00 2.73
3183 4698 0.471591 AGCTATGGGGCCTCAGAGAG 60.472 60.000 31.55 18.63 0.00 3.20
3184 4699 0.762082 CAGCTATGGGGCCTCAGAGA 60.762 60.000 31.55 8.03 0.00 3.10
3185 4700 1.753470 CAGCTATGGGGCCTCAGAG 59.247 63.158 23.53 23.53 0.00 3.35
3186 4701 2.446848 GCAGCTATGGGGCCTCAGA 61.447 63.158 13.01 5.26 0.00 3.27
3187 4702 2.112718 GCAGCTATGGGGCCTCAG 59.887 66.667 13.01 0.00 0.00 3.35
3188 4703 3.865383 CGCAGCTATGGGGCCTCA 61.865 66.667 8.41 8.41 35.79 3.86
3201 4716 0.526524 GTAGTGTGAGCTAGGCGCAG 60.527 60.000 10.83 0.00 39.27 5.18
3202 4717 1.248101 TGTAGTGTGAGCTAGGCGCA 61.248 55.000 10.83 0.00 42.61 6.09
3203 4718 0.108804 TTGTAGTGTGAGCTAGGCGC 60.109 55.000 0.00 0.00 39.57 6.53
3208 4723 3.260632 TGAGGCATTTGTAGTGTGAGCTA 59.739 43.478 0.00 0.00 0.00 3.32
3211 4726 3.930336 TCTGAGGCATTTGTAGTGTGAG 58.070 45.455 0.00 0.00 0.00 3.51
3215 4730 2.012673 GGCTCTGAGGCATTTGTAGTG 58.987 52.381 24.49 0.00 40.97 2.74
3248 4782 4.100808 AGAGAGAGAGAGAGAGAGAGAAGC 59.899 50.000 0.00 0.00 0.00 3.86
3254 4788 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
3264 4798 5.604758 TTGAGAGAGAGAGAGAGAGAGAG 57.395 47.826 0.00 0.00 0.00 3.20
3265 4799 6.611236 TGTATTGAGAGAGAGAGAGAGAGAGA 59.389 42.308 0.00 0.00 0.00 3.10
3267 4801 6.806668 TGTATTGAGAGAGAGAGAGAGAGA 57.193 41.667 0.00 0.00 0.00 3.10
3268 4802 7.864108 TTTGTATTGAGAGAGAGAGAGAGAG 57.136 40.000 0.00 0.00 0.00 3.20
3270 4804 8.282592 CGTATTTGTATTGAGAGAGAGAGAGAG 58.717 40.741 0.00 0.00 0.00 3.20
3271 4805 7.227711 CCGTATTTGTATTGAGAGAGAGAGAGA 59.772 40.741 0.00 0.00 0.00 3.10
3272 4806 7.012894 ACCGTATTTGTATTGAGAGAGAGAGAG 59.987 40.741 0.00 0.00 0.00 3.20
3274 4808 7.012894 AGACCGTATTTGTATTGAGAGAGAGAG 59.987 40.741 0.00 0.00 0.00 3.20
3275 4809 6.829298 AGACCGTATTTGTATTGAGAGAGAGA 59.171 38.462 0.00 0.00 0.00 3.10
3276 4810 7.033530 AGACCGTATTTGTATTGAGAGAGAG 57.966 40.000 0.00 0.00 0.00 3.20
3277 4811 7.406031 AAGACCGTATTTGTATTGAGAGAGA 57.594 36.000 0.00 0.00 0.00 3.10
3278 4812 8.480643 AAAAGACCGTATTTGTATTGAGAGAG 57.519 34.615 0.00 0.00 0.00 3.20
3279 4813 9.362539 GTAAAAGACCGTATTTGTATTGAGAGA 57.637 33.333 0.00 0.00 0.00 3.10
3280 4814 9.146984 TGTAAAAGACCGTATTTGTATTGAGAG 57.853 33.333 0.00 0.00 0.00 3.20
3281 4815 8.928733 GTGTAAAAGACCGTATTTGTATTGAGA 58.071 33.333 0.00 0.00 0.00 3.27
3282 4816 8.714179 TGTGTAAAAGACCGTATTTGTATTGAG 58.286 33.333 0.00 0.00 0.00 3.02
3283 4817 8.604640 TGTGTAAAAGACCGTATTTGTATTGA 57.395 30.769 0.00 0.00 0.00 2.57
3284 4818 9.272901 CATGTGTAAAAGACCGTATTTGTATTG 57.727 33.333 0.00 0.00 0.00 1.90
3285 4819 8.455682 CCATGTGTAAAAGACCGTATTTGTATT 58.544 33.333 0.00 0.00 0.00 1.89
3286 4820 7.066525 CCCATGTGTAAAAGACCGTATTTGTAT 59.933 37.037 0.00 0.00 0.00 2.29
3288 4822 5.182380 CCCATGTGTAAAAGACCGTATTTGT 59.818 40.000 0.00 0.00 0.00 2.83
3289 4823 5.182380 ACCCATGTGTAAAAGACCGTATTTG 59.818 40.000 0.00 0.00 0.00 2.32
3290 4824 5.318630 ACCCATGTGTAAAAGACCGTATTT 58.681 37.500 0.00 0.00 0.00 1.40
3291 4825 4.913784 ACCCATGTGTAAAAGACCGTATT 58.086 39.130 0.00 0.00 0.00 1.89
3292 4826 4.563140 ACCCATGTGTAAAAGACCGTAT 57.437 40.909 0.00 0.00 0.00 3.06
3293 4827 4.282957 TGTACCCATGTGTAAAAGACCGTA 59.717 41.667 0.00 0.00 0.00 4.02
3294 4828 2.943036 ACCCATGTGTAAAAGACCGT 57.057 45.000 0.00 0.00 0.00 4.83
3295 4829 3.666274 TGTACCCATGTGTAAAAGACCG 58.334 45.455 0.00 0.00 0.00 4.79
3296 4830 4.822896 TGTTGTACCCATGTGTAAAAGACC 59.177 41.667 0.00 0.00 0.00 3.85
3297 4831 6.380095 TTGTTGTACCCATGTGTAAAAGAC 57.620 37.500 0.00 0.00 0.00 3.01
3298 4832 7.406031 TTTTGTTGTACCCATGTGTAAAAGA 57.594 32.000 0.00 0.00 0.00 2.52
3299 4833 9.405587 CTATTTTGTTGTACCCATGTGTAAAAG 57.594 33.333 0.00 0.00 0.00 2.27
3300 4834 9.132923 TCTATTTTGTTGTACCCATGTGTAAAA 57.867 29.630 0.00 0.00 0.00 1.52
3301 4835 8.693120 TCTATTTTGTTGTACCCATGTGTAAA 57.307 30.769 0.00 0.00 0.00 2.01
3302 4836 8.735315 CATCTATTTTGTTGTACCCATGTGTAA 58.265 33.333 0.00 0.00 0.00 2.41
3303 4837 8.103935 TCATCTATTTTGTTGTACCCATGTGTA 58.896 33.333 0.00 0.00 0.00 2.90
3304 4838 6.945435 TCATCTATTTTGTTGTACCCATGTGT 59.055 34.615 0.00 0.00 0.00 3.72
3305 4839 7.389803 TCATCTATTTTGTTGTACCCATGTG 57.610 36.000 0.00 0.00 0.00 3.21
3306 4840 7.361713 CGTTCATCTATTTTGTTGTACCCATGT 60.362 37.037 0.00 0.00 0.00 3.21
3307 4841 6.966632 CGTTCATCTATTTTGTTGTACCCATG 59.033 38.462 0.00 0.00 0.00 3.66
3331 4865 6.449635 TTTCATATCCATTGGTTTTCTCCG 57.550 37.500 1.86 0.00 0.00 4.63
3358 4892 7.271511 ACTCATTTGTTTTGTTCATGCCTTTA 58.728 30.769 0.00 0.00 0.00 1.85
3380 4914 5.006455 CACACATGCTCATCAGTTATGACTC 59.994 44.000 0.00 0.00 39.77 3.36
3383 4917 4.193865 CCACACATGCTCATCAGTTATGA 58.806 43.478 0.00 0.00 42.48 2.15
3390 4924 0.393402 GAGGCCACACATGCTCATCA 60.393 55.000 5.01 0.00 0.00 3.07
3391 4925 0.107312 AGAGGCCACACATGCTCATC 60.107 55.000 5.01 0.00 0.00 2.92
3395 4929 0.178981 AACAAGAGGCCACACATGCT 60.179 50.000 5.01 0.00 0.00 3.79
3410 4944 7.164230 ACAACCTCAATTTCAGTTACAACAA 57.836 32.000 0.00 0.00 0.00 2.83
3425 4959 2.198406 CGAGTGAACGAACAACCTCAA 58.802 47.619 0.00 0.00 35.09 3.02
3426 4960 1.537348 CCGAGTGAACGAACAACCTCA 60.537 52.381 0.00 0.00 35.09 3.86
3429 4963 1.568025 GCCGAGTGAACGAACAACC 59.432 57.895 0.00 0.00 35.09 3.77
3442 4976 1.153939 CAGACTGAACTCGGCCGAG 60.154 63.158 45.26 45.26 46.91 4.63
3446 4980 1.865865 TTTGACAGACTGAACTCGGC 58.134 50.000 10.08 0.00 0.00 5.54
3450 4984 5.707298 CCCACATTATTTGACAGACTGAACT 59.293 40.000 10.08 0.00 0.00 3.01
3456 4990 7.391148 AACATACCCACATTATTTGACAGAC 57.609 36.000 0.00 0.00 0.00 3.51
3462 4998 9.248291 GCAATCTAAACATACCCACATTATTTG 57.752 33.333 0.00 0.00 0.00 2.32
3471 5007 4.100344 TCGCTAGCAATCTAAACATACCCA 59.900 41.667 16.45 0.00 0.00 4.51
3491 5027 6.903479 CGAAAAATTGGTAAGGTAGTATTCGC 59.097 38.462 0.00 0.00 0.00 4.70
3493 5029 7.201758 CCCCGAAAAATTGGTAAGGTAGTATTC 60.202 40.741 0.00 0.00 0.00 1.75
3510 5046 5.810080 ATATTTTGTTCACCCCCGAAAAA 57.190 34.783 0.00 0.00 0.00 1.94
3519 5055 5.975693 TGAGGACCAATATTTTGTTCACC 57.024 39.130 0.00 0.00 0.00 4.02
3520 5056 8.087750 TCAAATGAGGACCAATATTTTGTTCAC 58.912 33.333 0.00 0.00 0.00 3.18
3523 5059 9.439500 CATTCAAATGAGGACCAATATTTTGTT 57.561 29.630 0.00 0.00 38.70 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.