Multiple sequence alignment - TraesCS7A01G497200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G497200 chr7A 100.000 3642 0 0 1 3642 686935931 686939572 0.000000e+00 6726.0
1 TraesCS7A01G497200 chr7A 85.816 141 20 0 3019 3159 175212629 175212489 2.270000e-32 150.0
2 TraesCS7A01G497200 chr7D 93.374 2611 111 32 216 2785 594731704 594729115 0.000000e+00 3807.0
3 TraesCS7A01G497200 chr7D 91.853 626 47 3 3019 3642 594729040 594728417 0.000000e+00 870.0
4 TraesCS7A01G497200 chr7D 89.941 169 13 3 2786 2953 456622589 456622424 7.920000e-52 215.0
5 TraesCS7A01G497200 chr7B 92.887 2615 133 23 199 2784 667072417 667069827 0.000000e+00 3749.0
6 TraesCS7A01G497200 chr7B 87.905 463 54 2 3015 3475 667069755 667069293 8.890000e-151 544.0
7 TraesCS7A01G497200 chr7B 90.058 171 15 1 2786 2956 649864635 649864467 1.700000e-53 220.0
8 TraesCS7A01G497200 chr5B 91.667 168 12 2 2786 2953 259848754 259848589 7.860000e-57 231.0
9 TraesCS7A01G497200 chr3D 90.964 166 13 1 2785 2950 569524548 569524711 4.730000e-54 222.0
10 TraesCS7A01G497200 chr3D 86.331 139 19 0 3018 3156 148195736 148195598 6.300000e-33 152.0
11 TraesCS7A01G497200 chr6B 86.935 199 23 2 2024 2219 198985195 198984997 1.700000e-53 220.0
12 TraesCS7A01G497200 chr6B 89.941 169 15 2 2785 2953 690441409 690441243 2.200000e-52 217.0
13 TraesCS7A01G497200 chr6B 80.456 307 39 16 1072 1363 198986205 198985905 7.920000e-52 215.0
14 TraesCS7A01G497200 chr4B 87.978 183 18 4 2778 2959 345955223 345955402 2.850000e-51 213.0
15 TraesCS7A01G497200 chr4B 84.058 69 7 4 2697 2763 640288413 640288479 3.040000e-06 63.9
16 TraesCS7A01G497200 chr3A 89.820 167 15 1 2787 2953 63714080 63713916 2.850000e-51 213.0
17 TraesCS7A01G497200 chr3A 86.232 138 19 0 3019 3156 389855461 389855324 2.270000e-32 150.0
18 TraesCS7A01G497200 chr3A 83.721 86 12 2 2697 2781 171772492 171772576 3.010000e-11 80.5
19 TraesCS7A01G497200 chrUn 88.953 172 17 1 2784 2955 411494205 411494374 1.020000e-50 211.0
20 TraesCS7A01G497200 chrUn 88.953 172 17 1 2784 2955 433044766 433044597 1.020000e-50 211.0
21 TraesCS7A01G497200 chr6A 80.130 307 40 17 1072 1363 134949350 134949050 3.690000e-50 209.0
22 TraesCS7A01G497200 chr6A 87.500 176 17 3 2024 2198 134948347 134948176 7.980000e-47 198.0
23 TraesCS7A01G497200 chr6A 81.818 88 14 2 2698 2784 543521578 543521492 5.040000e-09 73.1
24 TraesCS7A01G497200 chr6D 89.091 165 15 2 2024 2188 110443600 110443439 6.170000e-48 202.0
25 TraesCS7A01G497200 chr2A 83.178 214 24 10 1147 1354 594580402 594580609 6.210000e-43 185.0
26 TraesCS7A01G497200 chr2A 85.795 176 17 8 2022 2190 594581062 594581236 2.890000e-41 180.0
27 TraesCS7A01G497200 chr2A 87.681 138 17 0 3019 3156 380292050 380291913 1.050000e-35 161.0
28 TraesCS7A01G497200 chr2B 86.207 174 16 8 2022 2188 530307305 530307477 8.030000e-42 182.0
29 TraesCS7A01G497200 chr2B 82.710 214 25 10 1147 1354 530306641 530306848 2.890000e-41 180.0
30 TraesCS7A01G497200 chr2D 86.420 162 16 6 2032 2188 450235652 450235812 4.830000e-39 172.0
31 TraesCS7A01G497200 chr2D 86.861 137 18 0 3019 3155 390266153 390266017 1.750000e-33 154.0
32 TraesCS7A01G497200 chr2D 86.331 139 19 0 3019 3157 585117112 585117250 6.300000e-33 152.0
33 TraesCS7A01G497200 chr5D 85.915 142 20 0 3015 3156 504790721 504790862 6.300000e-33 152.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G497200 chr7A 686935931 686939572 3641 False 6726.0 6726 100.0000 1 3642 1 chr7A.!!$F1 3641
1 TraesCS7A01G497200 chr7D 594728417 594731704 3287 True 2338.5 3807 92.6135 216 3642 2 chr7D.!!$R2 3426
2 TraesCS7A01G497200 chr7B 667069293 667072417 3124 True 2146.5 3749 90.3960 199 3475 2 chr7B.!!$R2 3276
3 TraesCS7A01G497200 chr6B 198984997 198986205 1208 True 217.5 220 83.6955 1072 2219 2 chr6B.!!$R2 1147
4 TraesCS7A01G497200 chr6A 134948176 134949350 1174 True 203.5 209 83.8150 1072 2198 2 chr6A.!!$R2 1126

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
535 540 0.033796 ACGTTACATCCCGGAGAGGA 60.034 55.0 0.73 0.0 45.0 3.71 F
1404 1483 0.107508 CCGAGGCCATGATGTTCTGT 60.108 55.0 5.01 0.0 0.0 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1675 1778 1.094073 TACGAGGAGCTGTAGGTCGC 61.094 60.0 0.00 0.03 43.03 5.19 R
2934 3177 0.109342 CCAATGGCGGCTCTAGGAAT 59.891 55.0 11.43 0.00 0.00 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 7.454225 ACTGAAGTTGATTATCTTATAGGCCC 58.546 38.462 0.00 0.00 0.00 5.80
33 34 6.779860 TGAAGTTGATTATCTTATAGGCCCC 58.220 40.000 0.00 0.00 0.00 5.80
34 35 5.422214 AGTTGATTATCTTATAGGCCCCG 57.578 43.478 0.00 0.00 0.00 5.73
35 36 4.225267 AGTTGATTATCTTATAGGCCCCGG 59.775 45.833 0.00 0.00 0.00 5.73
36 37 3.798515 TGATTATCTTATAGGCCCCGGT 58.201 45.455 0.00 0.00 0.00 5.28
37 38 4.172807 TGATTATCTTATAGGCCCCGGTT 58.827 43.478 0.00 0.00 0.00 4.44
38 39 5.343715 TGATTATCTTATAGGCCCCGGTTA 58.656 41.667 0.00 0.00 0.00 2.85
39 40 5.188359 TGATTATCTTATAGGCCCCGGTTAC 59.812 44.000 0.00 0.00 0.00 2.50
40 41 2.781403 TCTTATAGGCCCCGGTTACT 57.219 50.000 0.00 0.00 0.00 2.24
41 42 2.601905 TCTTATAGGCCCCGGTTACTC 58.398 52.381 0.00 0.00 0.00 2.59
42 43 2.091166 TCTTATAGGCCCCGGTTACTCA 60.091 50.000 0.00 0.00 0.00 3.41
43 44 2.708037 TATAGGCCCCGGTTACTCAT 57.292 50.000 0.00 0.00 0.00 2.90
44 45 1.815757 ATAGGCCCCGGTTACTCATT 58.184 50.000 0.00 0.00 0.00 2.57
45 46 1.587066 TAGGCCCCGGTTACTCATTT 58.413 50.000 0.00 0.00 0.00 2.32
46 47 0.702316 AGGCCCCGGTTACTCATTTT 59.298 50.000 0.00 0.00 0.00 1.82
47 48 1.917568 AGGCCCCGGTTACTCATTTTA 59.082 47.619 0.00 0.00 0.00 1.52
48 49 2.092592 AGGCCCCGGTTACTCATTTTAG 60.093 50.000 0.00 0.00 0.00 1.85
49 50 1.674441 GCCCCGGTTACTCATTTTAGC 59.326 52.381 0.00 0.00 0.00 3.09
50 51 1.937899 CCCCGGTTACTCATTTTAGCG 59.062 52.381 0.00 0.00 0.00 4.26
52 53 1.329599 CCGGTTACTCATTTTAGCGGC 59.670 52.381 0.00 0.00 43.46 6.53
53 54 1.005347 CGGTTACTCATTTTAGCGGCG 60.005 52.381 0.51 0.51 0.00 6.46
54 55 1.329599 GGTTACTCATTTTAGCGGCGG 59.670 52.381 9.78 0.00 0.00 6.13
55 56 1.011333 TTACTCATTTTAGCGGCGGC 58.989 50.000 9.78 8.43 40.37 6.53
56 57 1.149361 TACTCATTTTAGCGGCGGCG 61.149 55.000 28.70 28.70 46.35 6.46
57 58 2.435234 TCATTTTAGCGGCGGCGT 60.435 55.556 32.35 20.67 46.35 5.68
58 59 2.022762 CATTTTAGCGGCGGCGTC 59.977 61.111 32.35 23.40 46.35 5.19
59 60 2.435234 ATTTTAGCGGCGGCGTCA 60.435 55.556 32.35 17.70 46.35 4.35
60 61 2.036006 ATTTTAGCGGCGGCGTCAA 61.036 52.632 32.35 22.37 46.35 3.18
61 62 1.373590 ATTTTAGCGGCGGCGTCAAT 61.374 50.000 32.35 20.39 46.35 2.57
62 63 2.246993 TTTTAGCGGCGGCGTCAATG 62.247 55.000 32.35 3.84 46.35 2.82
66 67 3.261951 CGGCGGCGTCAATGGTAG 61.262 66.667 24.74 0.00 0.00 3.18
67 68 2.125269 GGCGGCGTCAATGGTAGT 60.125 61.111 6.63 0.00 0.00 2.73
68 69 1.743995 GGCGGCGTCAATGGTAGTT 60.744 57.895 6.63 0.00 0.00 2.24
69 70 1.702491 GGCGGCGTCAATGGTAGTTC 61.702 60.000 6.63 0.00 0.00 3.01
70 71 1.995991 CGGCGTCAATGGTAGTTCG 59.004 57.895 0.00 0.00 0.00 3.95
71 72 1.418342 CGGCGTCAATGGTAGTTCGG 61.418 60.000 0.00 0.00 0.00 4.30
72 73 0.390735 GGCGTCAATGGTAGTTCGGT 60.391 55.000 0.00 0.00 0.00 4.69
73 74 0.719465 GCGTCAATGGTAGTTCGGTG 59.281 55.000 0.00 0.00 0.00 4.94
74 75 1.670674 GCGTCAATGGTAGTTCGGTGA 60.671 52.381 0.00 0.00 0.00 4.02
75 76 1.990563 CGTCAATGGTAGTTCGGTGAC 59.009 52.381 0.00 0.00 33.62 3.67
76 77 2.344025 GTCAATGGTAGTTCGGTGACC 58.656 52.381 0.00 0.00 31.32 4.02
77 78 1.276989 TCAATGGTAGTTCGGTGACCC 59.723 52.381 0.00 0.00 31.80 4.46
78 79 1.002659 CAATGGTAGTTCGGTGACCCA 59.997 52.381 0.00 0.00 31.80 4.51
79 80 1.354101 ATGGTAGTTCGGTGACCCAA 58.646 50.000 0.00 0.00 31.80 4.12
80 81 0.682852 TGGTAGTTCGGTGACCCAAG 59.317 55.000 0.00 0.00 31.80 3.61
81 82 0.971386 GGTAGTTCGGTGACCCAAGA 59.029 55.000 0.00 0.00 0.00 3.02
82 83 1.345415 GGTAGTTCGGTGACCCAAGAA 59.655 52.381 0.00 0.00 0.00 2.52
83 84 2.612221 GGTAGTTCGGTGACCCAAGAAG 60.612 54.545 0.00 0.00 0.00 2.85
84 85 0.250338 AGTTCGGTGACCCAAGAAGC 60.250 55.000 0.00 0.00 0.00 3.86
85 86 0.250338 GTTCGGTGACCCAAGAAGCT 60.250 55.000 0.00 0.00 0.00 3.74
86 87 0.472471 TTCGGTGACCCAAGAAGCTT 59.528 50.000 0.00 0.00 0.00 3.74
87 88 0.250295 TCGGTGACCCAAGAAGCTTG 60.250 55.000 2.10 0.00 0.00 4.01
88 89 0.250295 CGGTGACCCAAGAAGCTTGA 60.250 55.000 2.10 0.00 0.00 3.02
89 90 1.239347 GGTGACCCAAGAAGCTTGAC 58.761 55.000 2.10 0.00 0.00 3.18
90 91 0.868406 GTGACCCAAGAAGCTTGACG 59.132 55.000 2.10 0.00 0.00 4.35
91 92 0.468226 TGACCCAAGAAGCTTGACGT 59.532 50.000 2.10 0.00 0.00 4.34
92 93 1.689813 TGACCCAAGAAGCTTGACGTA 59.310 47.619 2.10 0.00 0.00 3.57
93 94 2.103432 TGACCCAAGAAGCTTGACGTAA 59.897 45.455 2.10 0.00 0.00 3.18
94 95 3.244422 TGACCCAAGAAGCTTGACGTAAT 60.244 43.478 2.10 0.00 0.00 1.89
95 96 3.751518 ACCCAAGAAGCTTGACGTAATT 58.248 40.909 2.10 0.00 0.00 1.40
96 97 4.142038 ACCCAAGAAGCTTGACGTAATTT 58.858 39.130 2.10 0.00 0.00 1.82
97 98 4.583073 ACCCAAGAAGCTTGACGTAATTTT 59.417 37.500 2.10 0.00 0.00 1.82
98 99 5.068591 ACCCAAGAAGCTTGACGTAATTTTT 59.931 36.000 2.10 0.00 0.00 1.94
99 100 5.402270 CCCAAGAAGCTTGACGTAATTTTTG 59.598 40.000 2.10 0.00 0.00 2.44
100 101 5.977129 CCAAGAAGCTTGACGTAATTTTTGT 59.023 36.000 2.10 0.00 0.00 2.83
101 102 6.142320 CCAAGAAGCTTGACGTAATTTTTGTC 59.858 38.462 2.10 0.00 0.00 3.18
102 103 6.371809 AGAAGCTTGACGTAATTTTTGTCA 57.628 33.333 2.10 3.75 40.62 3.58
103 104 6.970484 AGAAGCTTGACGTAATTTTTGTCAT 58.030 32.000 2.10 0.00 41.80 3.06
104 105 6.857964 AGAAGCTTGACGTAATTTTTGTCATG 59.142 34.615 2.10 10.16 41.80 3.07
105 106 6.072112 AGCTTGACGTAATTTTTGTCATGT 57.928 33.333 15.33 0.00 41.80 3.21
106 107 6.503524 AGCTTGACGTAATTTTTGTCATGTT 58.496 32.000 15.33 10.38 41.80 2.71
107 108 6.978080 AGCTTGACGTAATTTTTGTCATGTTT 59.022 30.769 15.33 7.32 41.80 2.83
108 109 7.043458 AGCTTGACGTAATTTTTGTCATGTTTG 60.043 33.333 15.33 5.61 41.80 2.93
109 110 7.043722 GCTTGACGTAATTTTTGTCATGTTTGA 60.044 33.333 15.33 0.00 41.80 2.69
110 111 8.689251 TTGACGTAATTTTTGTCATGTTTGAA 57.311 26.923 7.61 0.00 41.80 2.69
111 112 8.334016 TGACGTAATTTTTGTCATGTTTGAAG 57.666 30.769 0.00 0.00 37.69 3.02
112 113 7.971168 TGACGTAATTTTTGTCATGTTTGAAGT 59.029 29.630 0.00 0.00 37.69 3.01
113 114 8.114359 ACGTAATTTTTGTCATGTTTGAAGTG 57.886 30.769 0.00 0.00 32.48 3.16
114 115 7.056800 CGTAATTTTTGTCATGTTTGAAGTGC 58.943 34.615 0.00 0.00 32.48 4.40
115 116 7.043458 CGTAATTTTTGTCATGTTTGAAGTGCT 60.043 33.333 0.00 0.00 32.48 4.40
116 117 7.614124 AATTTTTGTCATGTTTGAAGTGCTT 57.386 28.000 0.00 0.00 32.48 3.91
117 118 7.614124 ATTTTTGTCATGTTTGAAGTGCTTT 57.386 28.000 0.00 0.00 32.48 3.51
118 119 6.406093 TTTTGTCATGTTTGAAGTGCTTTG 57.594 33.333 0.00 0.00 32.48 2.77
119 120 4.979943 TGTCATGTTTGAAGTGCTTTGA 57.020 36.364 0.00 0.00 32.48 2.69
120 121 5.321959 TGTCATGTTTGAAGTGCTTTGAA 57.678 34.783 0.00 0.00 32.48 2.69
121 122 5.101628 TGTCATGTTTGAAGTGCTTTGAAC 58.898 37.500 0.00 5.17 32.48 3.18
122 123 5.105797 TGTCATGTTTGAAGTGCTTTGAACT 60.106 36.000 0.00 0.00 32.48 3.01
123 124 5.807011 GTCATGTTTGAAGTGCTTTGAACTT 59.193 36.000 0.00 0.00 40.54 2.66
124 125 6.972328 GTCATGTTTGAAGTGCTTTGAACTTA 59.028 34.615 0.00 0.00 37.98 2.24
125 126 6.972328 TCATGTTTGAAGTGCTTTGAACTTAC 59.028 34.615 0.00 0.00 37.98 2.34
126 127 5.646606 TGTTTGAAGTGCTTTGAACTTACC 58.353 37.500 10.44 0.00 37.98 2.85
127 128 4.911514 TTGAAGTGCTTTGAACTTACCC 57.088 40.909 0.00 0.00 37.98 3.69
128 129 3.219281 TGAAGTGCTTTGAACTTACCCC 58.781 45.455 0.00 0.00 37.98 4.95
129 130 1.892209 AGTGCTTTGAACTTACCCCG 58.108 50.000 0.00 0.00 0.00 5.73
130 131 0.240145 GTGCTTTGAACTTACCCCGC 59.760 55.000 0.00 0.00 0.00 6.13
131 132 0.179015 TGCTTTGAACTTACCCCGCA 60.179 50.000 0.00 0.00 0.00 5.69
132 133 0.955905 GCTTTGAACTTACCCCGCAA 59.044 50.000 0.00 0.00 0.00 4.85
133 134 1.338655 GCTTTGAACTTACCCCGCAAA 59.661 47.619 0.00 0.00 0.00 3.68
134 135 2.223852 GCTTTGAACTTACCCCGCAAAA 60.224 45.455 0.00 0.00 0.00 2.44
135 136 3.738590 GCTTTGAACTTACCCCGCAAAAA 60.739 43.478 0.00 0.00 0.00 1.94
163 164 9.959749 AAAAATGCTTTGAACTTTCGTAATAGA 57.040 25.926 0.00 0.00 0.00 1.98
164 165 9.959749 AAAATGCTTTGAACTTTCGTAATAGAA 57.040 25.926 0.00 0.00 0.00 2.10
165 166 8.950403 AATGCTTTGAACTTTCGTAATAGAAC 57.050 30.769 0.00 0.00 0.00 3.01
166 167 7.724305 TGCTTTGAACTTTCGTAATAGAACT 57.276 32.000 0.00 0.00 0.00 3.01
167 168 8.821147 TGCTTTGAACTTTCGTAATAGAACTA 57.179 30.769 0.00 0.00 0.00 2.24
168 169 8.922676 TGCTTTGAACTTTCGTAATAGAACTAG 58.077 33.333 0.00 0.00 0.00 2.57
169 170 8.923683 GCTTTGAACTTTCGTAATAGAACTAGT 58.076 33.333 0.00 0.00 0.00 2.57
178 179 7.731556 TCGTAATAGAACTAGTCTTTTTCGC 57.268 36.000 0.00 0.00 37.71 4.70
179 180 7.533426 TCGTAATAGAACTAGTCTTTTTCGCT 58.467 34.615 0.00 0.00 37.71 4.93
180 181 8.668353 TCGTAATAGAACTAGTCTTTTTCGCTA 58.332 33.333 0.00 0.00 37.71 4.26
181 182 9.282247 CGTAATAGAACTAGTCTTTTTCGCTAA 57.718 33.333 0.00 0.00 37.84 3.09
185 186 7.781548 AGAACTAGTCTTTTTCGCTAAAACA 57.218 32.000 0.00 0.00 34.34 2.83
186 187 8.205131 AGAACTAGTCTTTTTCGCTAAAACAA 57.795 30.769 0.00 0.00 34.34 2.83
187 188 8.671028 AGAACTAGTCTTTTTCGCTAAAACAAA 58.329 29.630 0.00 0.00 34.34 2.83
188 189 9.281075 GAACTAGTCTTTTTCGCTAAAACAAAA 57.719 29.630 0.00 0.00 34.34 2.44
189 190 9.797556 AACTAGTCTTTTTCGCTAAAACAAAAT 57.202 25.926 0.00 0.00 34.34 1.82
190 191 9.447040 ACTAGTCTTTTTCGCTAAAACAAAATC 57.553 29.630 0.00 0.00 34.34 2.17
191 192 9.665264 CTAGTCTTTTTCGCTAAAACAAAATCT 57.335 29.630 0.00 0.00 34.34 2.40
192 193 8.340230 AGTCTTTTTCGCTAAAACAAAATCTG 57.660 30.769 0.00 0.00 34.34 2.90
193 194 7.973944 AGTCTTTTTCGCTAAAACAAAATCTGT 59.026 29.630 0.00 0.00 41.27 3.41
194 195 9.228636 GTCTTTTTCGCTAAAACAAAATCTGTA 57.771 29.630 0.00 0.00 37.23 2.74
195 196 9.228636 TCTTTTTCGCTAAAACAAAATCTGTAC 57.771 29.630 0.00 0.00 37.23 2.90
196 197 8.912787 TTTTTCGCTAAAACAAAATCTGTACA 57.087 26.923 0.00 0.00 37.23 2.90
197 198 8.912787 TTTTCGCTAAAACAAAATCTGTACAA 57.087 26.923 0.00 0.00 37.23 2.41
204 205 9.872757 CTAAAACAAAATCTGTACAATACGTGT 57.127 29.630 0.00 0.00 44.82 4.49
210 211 8.652463 CAAAATCTGTACAATACGTGTCATACA 58.348 33.333 0.00 3.44 41.98 2.29
211 212 8.766000 AAATCTGTACAATACGTGTCATACAA 57.234 30.769 0.00 0.00 41.98 2.41
214 215 4.858140 TGTACAATACGTGTCATACAACCG 59.142 41.667 0.00 0.00 41.98 4.44
229 230 0.535780 AACCGTCTTTTTCGGGTCCC 60.536 55.000 0.00 0.00 45.81 4.46
230 231 1.071814 CCGTCTTTTTCGGGTCCCA 59.928 57.895 9.12 0.00 43.68 4.37
284 285 7.708998 ACGTATTTGTACTGGTTTTTGATTGT 58.291 30.769 0.00 0.00 0.00 2.71
386 388 2.029918 AGGTCAAAGGAAATTTCGCAGC 60.030 45.455 11.95 3.91 0.00 5.25
531 536 1.997606 GTTCAACGTTACATCCCGGAG 59.002 52.381 0.73 0.00 0.00 4.63
532 537 1.548081 TCAACGTTACATCCCGGAGA 58.452 50.000 0.73 0.00 0.00 3.71
533 538 1.475280 TCAACGTTACATCCCGGAGAG 59.525 52.381 0.73 0.00 0.00 3.20
534 539 0.822164 AACGTTACATCCCGGAGAGG 59.178 55.000 0.73 2.52 40.63 3.69
535 540 0.033796 ACGTTACATCCCGGAGAGGA 60.034 55.000 0.73 0.00 45.00 3.71
536 541 0.669077 CGTTACATCCCGGAGAGGAG 59.331 60.000 0.73 0.00 45.00 3.69
537 542 1.749635 CGTTACATCCCGGAGAGGAGA 60.750 57.143 0.73 0.00 45.00 3.71
573 584 2.083774 CGAGGTAGCAAAATCAGCCAA 58.916 47.619 0.00 0.00 0.00 4.52
678 689 0.756294 TCACAGTTCACGGACACCAT 59.244 50.000 0.00 0.00 0.00 3.55
679 690 1.148310 CACAGTTCACGGACACCATC 58.852 55.000 0.00 0.00 0.00 3.51
680 691 0.756294 ACAGTTCACGGACACCATCA 59.244 50.000 0.00 0.00 0.00 3.07
681 692 1.270305 ACAGTTCACGGACACCATCAG 60.270 52.381 0.00 0.00 0.00 2.90
682 693 0.320771 AGTTCACGGACACCATCAGC 60.321 55.000 0.00 0.00 0.00 4.26
882 905 2.044946 AACCCATCGCTTGGCTCC 60.045 61.111 0.00 0.00 44.97 4.70
1000 1027 1.717077 TCACTCTTCCCTCCCACTACT 59.283 52.381 0.00 0.00 0.00 2.57
1001 1028 2.104170 CACTCTTCCCTCCCACTACTC 58.896 57.143 0.00 0.00 0.00 2.59
1031 1058 4.776322 CCCGCCATTGCCTGTCGA 62.776 66.667 0.00 0.00 0.00 4.20
1037 1064 1.009829 CCATTGCCTGTCGAAGCTAC 58.990 55.000 5.13 0.00 0.00 3.58
1041 1068 0.958876 TGCCTGTCGAAGCTACGAGA 60.959 55.000 5.13 0.00 42.88 4.04
1042 1069 0.382515 GCCTGTCGAAGCTACGAGAT 59.617 55.000 0.00 0.00 42.88 2.75
1043 1070 1.202313 GCCTGTCGAAGCTACGAGATT 60.202 52.381 0.00 0.00 42.88 2.40
1044 1071 2.033049 GCCTGTCGAAGCTACGAGATTA 59.967 50.000 0.00 0.00 42.88 1.75
1046 1073 3.312973 CCTGTCGAAGCTACGAGATTAGT 59.687 47.826 0.00 0.00 42.88 2.24
1048 1075 5.007430 CCTGTCGAAGCTACGAGATTAGTTA 59.993 44.000 0.00 0.00 42.88 2.24
1049 1076 5.804173 TGTCGAAGCTACGAGATTAGTTAC 58.196 41.667 0.00 0.00 42.88 2.50
1050 1077 5.583854 TGTCGAAGCTACGAGATTAGTTACT 59.416 40.000 0.00 0.00 42.88 2.24
1051 1078 6.758416 TGTCGAAGCTACGAGATTAGTTACTA 59.242 38.462 0.00 0.00 42.88 1.82
1404 1483 0.107508 CCGAGGCCATGATGTTCTGT 60.108 55.000 5.01 0.00 0.00 3.41
1443 1522 4.570663 CGGGCGGATCAGGACGAC 62.571 72.222 0.00 0.00 37.40 4.34
1557 1645 2.439883 GTCGACCCCTACCTCGCT 60.440 66.667 3.51 0.00 0.00 4.93
1759 1862 3.564027 CCTTGGCGCGAACCGATC 61.564 66.667 12.10 0.00 40.02 3.69
1783 1886 1.234615 GCCTTCTTGCTTGCCGTACA 61.235 55.000 0.00 0.00 0.00 2.90
1845 1977 1.330655 GGGCTCTTCATCGGAGGTCA 61.331 60.000 0.00 0.00 0.00 4.02
2354 2589 3.777522 ACAGTAGTACGTAGGGGACTAGT 59.222 47.826 0.00 0.00 45.49 2.57
2396 2637 0.592754 GAGCTAGTTCGATCGCGCTT 60.593 55.000 11.09 0.00 37.46 4.68
2397 2638 0.179134 AGCTAGTTCGATCGCGCTTT 60.179 50.000 11.09 0.00 37.46 3.51
2493 2734 4.007659 CCGAAACTAGTAGCCCAAACATT 58.992 43.478 0.00 0.00 0.00 2.71
2562 2805 4.069304 TCATCTACCGACAAAAACAAGGG 58.931 43.478 0.00 0.00 0.00 3.95
2609 2852 8.177663 TGCTCTTGTGATCGATCTTAAAATTTC 58.822 33.333 25.02 8.36 0.00 2.17
2673 2916 5.111989 GGGTACTTTATCCGTGAAAGGTAC 58.888 45.833 0.00 0.00 38.07 3.34
2696 2939 9.006215 GTACGCACCAAATTAGCTTTATAAAAG 57.994 33.333 0.00 0.00 0.00 2.27
2730 2973 3.871594 GTGGTTGGATGATTAGAGGAACG 59.128 47.826 0.00 0.00 0.00 3.95
2732 2975 2.872858 GTTGGATGATTAGAGGAACGGC 59.127 50.000 0.00 0.00 0.00 5.68
2751 2994 1.689243 CGACATCCCAGCCCATCAGA 61.689 60.000 0.00 0.00 0.00 3.27
2756 2999 0.846427 TCCCAGCCCATCAGAGGTTT 60.846 55.000 0.00 0.00 0.00 3.27
2764 3007 4.726825 AGCCCATCAGAGGTTTAAATCCTA 59.273 41.667 8.69 0.00 35.20 2.94
2770 3013 7.286316 CCATCAGAGGTTTAAATCCTAATGCTT 59.714 37.037 8.69 2.60 35.20 3.91
2784 3027 3.756933 AATGCTTGCATTTGTTCCTGT 57.243 38.095 14.27 0.00 0.00 4.00
2785 3028 2.798976 TGCTTGCATTTGTTCCTGTC 57.201 45.000 0.00 0.00 0.00 3.51
2786 3029 2.030371 TGCTTGCATTTGTTCCTGTCA 58.970 42.857 0.00 0.00 0.00 3.58
2787 3030 2.034939 TGCTTGCATTTGTTCCTGTCAG 59.965 45.455 0.00 0.00 0.00 3.51
2788 3031 2.608752 GCTTGCATTTGTTCCTGTCAGG 60.609 50.000 13.21 13.21 36.46 3.86
2789 3032 1.619654 TGCATTTGTTCCTGTCAGGG 58.380 50.000 19.11 1.93 35.59 4.45
2790 3033 0.890683 GCATTTGTTCCTGTCAGGGG 59.109 55.000 19.11 0.00 35.59 4.79
2791 3034 0.890683 CATTTGTTCCTGTCAGGGGC 59.109 55.000 19.11 12.05 35.59 5.80
2792 3035 0.609131 ATTTGTTCCTGTCAGGGGCG 60.609 55.000 19.11 0.00 35.59 6.13
2793 3036 2.690653 TTTGTTCCTGTCAGGGGCGG 62.691 60.000 19.11 0.00 35.59 6.13
2798 3041 3.390521 CTGTCAGGGGCGGCAGTA 61.391 66.667 12.47 0.00 0.00 2.74
2799 3042 3.376935 CTGTCAGGGGCGGCAGTAG 62.377 68.421 12.47 0.00 0.00 2.57
2800 3043 4.162690 GTCAGGGGCGGCAGTAGG 62.163 72.222 12.47 0.00 0.00 3.18
2805 3048 2.847715 GGGCGGCAGTAGGGGTAT 60.848 66.667 12.47 0.00 0.00 2.73
2806 3049 2.449450 GGGCGGCAGTAGGGGTATT 61.449 63.158 12.47 0.00 0.00 1.89
2807 3050 1.070957 GGCGGCAGTAGGGGTATTC 59.929 63.158 3.07 0.00 0.00 1.75
2808 3051 1.408453 GGCGGCAGTAGGGGTATTCT 61.408 60.000 3.07 0.00 0.00 2.40
2809 3052 0.468648 GCGGCAGTAGGGGTATTCTT 59.531 55.000 0.00 0.00 0.00 2.52
2810 3053 1.810412 GCGGCAGTAGGGGTATTCTTG 60.810 57.143 0.00 0.00 0.00 3.02
2811 3054 1.760613 CGGCAGTAGGGGTATTCTTGA 59.239 52.381 0.00 0.00 0.00 3.02
2812 3055 2.224066 CGGCAGTAGGGGTATTCTTGAG 60.224 54.545 0.00 0.00 0.00 3.02
2813 3056 2.772515 GGCAGTAGGGGTATTCTTGAGT 59.227 50.000 0.00 0.00 0.00 3.41
2814 3057 3.181464 GGCAGTAGGGGTATTCTTGAGTC 60.181 52.174 0.00 0.00 0.00 3.36
2815 3058 3.707102 GCAGTAGGGGTATTCTTGAGTCT 59.293 47.826 0.00 0.00 0.00 3.24
2816 3059 4.162509 GCAGTAGGGGTATTCTTGAGTCTT 59.837 45.833 0.00 0.00 0.00 3.01
2817 3060 5.682730 GCAGTAGGGGTATTCTTGAGTCTTC 60.683 48.000 0.00 0.00 0.00 2.87
2818 3061 5.422331 CAGTAGGGGTATTCTTGAGTCTTCA 59.578 44.000 0.00 0.00 0.00 3.02
2819 3062 6.098982 CAGTAGGGGTATTCTTGAGTCTTCAT 59.901 42.308 0.00 0.00 32.27 2.57
2820 3063 5.365021 AGGGGTATTCTTGAGTCTTCATG 57.635 43.478 0.00 0.00 32.27 3.07
2821 3064 4.785376 AGGGGTATTCTTGAGTCTTCATGT 59.215 41.667 0.00 0.00 32.27 3.21
2822 3065 5.964477 AGGGGTATTCTTGAGTCTTCATGTA 59.036 40.000 0.00 0.00 32.27 2.29
2823 3066 6.617371 AGGGGTATTCTTGAGTCTTCATGTAT 59.383 38.462 0.00 0.00 32.27 2.29
2824 3067 7.789831 AGGGGTATTCTTGAGTCTTCATGTATA 59.210 37.037 0.00 0.00 32.27 1.47
2825 3068 8.598041 GGGGTATTCTTGAGTCTTCATGTATAT 58.402 37.037 0.00 0.00 32.27 0.86
2830 3073 8.547481 TTCTTGAGTCTTCATGTATATACCCA 57.453 34.615 10.38 0.00 32.27 4.51
2831 3074 8.727100 TCTTGAGTCTTCATGTATATACCCAT 57.273 34.615 10.38 0.00 32.27 4.00
2832 3075 8.588472 TCTTGAGTCTTCATGTATATACCCATG 58.412 37.037 10.38 8.40 39.82 3.66
2833 3076 8.491045 TTGAGTCTTCATGTATATACCCATGA 57.509 34.615 10.38 10.45 44.17 3.07
2834 3077 8.670521 TGAGTCTTCATGTATATACCCATGAT 57.329 34.615 13.80 3.21 44.93 2.45
2835 3078 9.104713 TGAGTCTTCATGTATATACCCATGATT 57.895 33.333 13.80 3.56 44.93 2.57
2836 3079 9.950496 GAGTCTTCATGTATATACCCATGATTT 57.050 33.333 13.80 4.26 44.93 2.17
2868 3111 6.566197 AAAAGTGTTGATTTTGGCAAAACA 57.434 29.167 26.23 21.28 36.22 2.83
2869 3112 5.799681 AAGTGTTGATTTTGGCAAAACAG 57.200 34.783 26.23 0.00 36.22 3.16
2870 3113 4.831107 AGTGTTGATTTTGGCAAAACAGT 58.169 34.783 26.23 19.44 36.22 3.55
2871 3114 4.630940 AGTGTTGATTTTGGCAAAACAGTG 59.369 37.500 26.23 0.00 36.22 3.66
2872 3115 3.937706 TGTTGATTTTGGCAAAACAGTGG 59.062 39.130 26.23 0.00 32.37 4.00
2873 3116 2.559440 TGATTTTGGCAAAACAGTGGC 58.441 42.857 26.23 12.39 44.09 5.01
2880 3123 3.607422 GGCAAAACAGTGGCAATTTTC 57.393 42.857 0.00 0.00 43.33 2.29
2881 3124 2.941720 GGCAAAACAGTGGCAATTTTCA 59.058 40.909 0.00 0.00 43.33 2.69
2882 3125 3.376546 GGCAAAACAGTGGCAATTTTCAA 59.623 39.130 0.00 0.00 43.33 2.69
2883 3126 4.142513 GGCAAAACAGTGGCAATTTTCAAA 60.143 37.500 0.00 0.00 43.33 2.69
2884 3127 5.397326 GCAAAACAGTGGCAATTTTCAAAA 58.603 33.333 0.00 0.00 0.00 2.44
2885 3128 5.860716 GCAAAACAGTGGCAATTTTCAAAAA 59.139 32.000 0.00 0.00 0.00 1.94
2886 3129 6.530887 GCAAAACAGTGGCAATTTTCAAAAAT 59.469 30.769 0.00 0.00 40.15 1.82
2887 3130 7.253717 GCAAAACAGTGGCAATTTTCAAAAATC 60.254 33.333 1.43 0.00 37.62 2.17
2888 3131 5.655893 ACAGTGGCAATTTTCAAAAATCG 57.344 34.783 1.43 0.00 37.62 3.34
2889 3132 5.355596 ACAGTGGCAATTTTCAAAAATCGA 58.644 33.333 1.43 0.00 37.62 3.59
2890 3133 5.234116 ACAGTGGCAATTTTCAAAAATCGAC 59.766 36.000 1.43 0.00 37.62 4.20
2891 3134 5.233902 CAGTGGCAATTTTCAAAAATCGACA 59.766 36.000 1.43 0.00 37.62 4.35
2892 3135 5.814705 AGTGGCAATTTTCAAAAATCGACAA 59.185 32.000 0.00 0.00 32.53 3.18
2893 3136 6.482973 AGTGGCAATTTTCAAAAATCGACAAT 59.517 30.769 0.00 0.00 32.53 2.71
2894 3137 6.574462 GTGGCAATTTTCAAAAATCGACAATG 59.426 34.615 0.00 0.00 32.53 2.82
2895 3138 6.481313 TGGCAATTTTCAAAAATCGACAATGA 59.519 30.769 1.43 0.00 37.62 2.57
2896 3139 7.172875 TGGCAATTTTCAAAAATCGACAATGAT 59.827 29.630 1.43 0.00 37.62 2.45
2897 3140 8.016801 GGCAATTTTCAAAAATCGACAATGATT 58.983 29.630 1.43 0.00 40.22 2.57
2909 3152 8.815141 AATCGACAATGATTTTGACAAAATGA 57.185 26.923 26.73 20.45 40.97 2.57
2910 3153 8.815141 ATCGACAATGATTTTGACAAAATGAA 57.185 26.923 26.73 16.49 40.97 2.57
2911 3154 8.815141 TCGACAATGATTTTGACAAAATGAAT 57.185 26.923 26.73 17.73 40.97 2.57
2912 3155 9.905171 TCGACAATGATTTTGACAAAATGAATA 57.095 25.926 26.73 12.80 40.97 1.75
2913 3156 9.941991 CGACAATGATTTTGACAAAATGAATAC 57.058 29.630 26.73 14.36 40.97 1.89
2919 3162 9.978044 TGATTTTGACAAAATGAATACACATGA 57.022 25.926 26.73 0.00 40.97 3.07
2924 3167 9.853555 TTGACAAAATGAATACACATGAATACC 57.146 29.630 0.00 0.00 0.00 2.73
2925 3168 8.465999 TGACAAAATGAATACACATGAATACCC 58.534 33.333 0.00 0.00 0.00 3.69
2926 3169 7.479980 ACAAAATGAATACACATGAATACCCG 58.520 34.615 0.00 0.00 0.00 5.28
2927 3170 6.633500 AAATGAATACACATGAATACCCGG 57.367 37.500 0.00 0.00 0.00 5.73
2928 3171 4.764050 TGAATACACATGAATACCCGGT 57.236 40.909 0.00 0.00 0.00 5.28
2929 3172 5.105567 TGAATACACATGAATACCCGGTT 57.894 39.130 0.00 0.00 0.00 4.44
2930 3173 4.878971 TGAATACACATGAATACCCGGTTG 59.121 41.667 0.00 0.00 0.00 3.77
2931 3174 1.459450 ACACATGAATACCCGGTTGC 58.541 50.000 0.00 0.00 0.00 4.17
2932 3175 1.271652 ACACATGAATACCCGGTTGCA 60.272 47.619 0.00 0.00 0.00 4.08
2933 3176 1.815613 CACATGAATACCCGGTTGCAA 59.184 47.619 0.00 0.00 0.00 4.08
2934 3177 2.230025 CACATGAATACCCGGTTGCAAA 59.770 45.455 0.00 0.00 0.00 3.68
2935 3178 3.096092 ACATGAATACCCGGTTGCAAAT 58.904 40.909 0.00 0.00 0.00 2.32
2936 3179 3.513515 ACATGAATACCCGGTTGCAAATT 59.486 39.130 0.00 0.00 0.00 1.82
2937 3180 3.859411 TGAATACCCGGTTGCAAATTC 57.141 42.857 0.00 6.52 0.00 2.17
2938 3181 2.494073 TGAATACCCGGTTGCAAATTCC 59.506 45.455 13.88 5.82 0.00 3.01
2939 3182 2.525105 ATACCCGGTTGCAAATTCCT 57.475 45.000 0.00 0.00 0.00 3.36
2940 3183 3.655615 ATACCCGGTTGCAAATTCCTA 57.344 42.857 0.00 0.00 0.00 2.94
2941 3184 1.834188 ACCCGGTTGCAAATTCCTAG 58.166 50.000 0.00 0.00 0.00 3.02
2942 3185 1.353022 ACCCGGTTGCAAATTCCTAGA 59.647 47.619 0.00 0.00 0.00 2.43
2943 3186 2.017049 CCCGGTTGCAAATTCCTAGAG 58.983 52.381 0.00 0.00 0.00 2.43
2944 3187 1.401905 CCGGTTGCAAATTCCTAGAGC 59.598 52.381 0.00 0.00 0.00 4.09
2945 3188 1.401905 CGGTTGCAAATTCCTAGAGCC 59.598 52.381 0.00 0.00 0.00 4.70
2946 3189 1.401905 GGTTGCAAATTCCTAGAGCCG 59.598 52.381 0.00 0.00 0.00 5.52
2947 3190 1.094785 TTGCAAATTCCTAGAGCCGC 58.905 50.000 0.00 0.00 0.00 6.53
2948 3191 0.748005 TGCAAATTCCTAGAGCCGCC 60.748 55.000 0.00 0.00 0.00 6.13
2949 3192 0.748005 GCAAATTCCTAGAGCCGCCA 60.748 55.000 0.00 0.00 0.00 5.69
2950 3193 1.972872 CAAATTCCTAGAGCCGCCAT 58.027 50.000 0.00 0.00 0.00 4.40
2951 3194 2.301346 CAAATTCCTAGAGCCGCCATT 58.699 47.619 0.00 0.00 0.00 3.16
2952 3195 1.972872 AATTCCTAGAGCCGCCATTG 58.027 50.000 0.00 0.00 0.00 2.82
2953 3196 0.109342 ATTCCTAGAGCCGCCATTGG 59.891 55.000 0.00 0.00 0.00 3.16
2954 3197 1.271840 TTCCTAGAGCCGCCATTGGT 61.272 55.000 4.26 0.00 0.00 3.67
2955 3198 1.224592 CCTAGAGCCGCCATTGGTT 59.775 57.895 4.26 0.00 0.00 3.67
2956 3199 0.815615 CCTAGAGCCGCCATTGGTTC 60.816 60.000 4.26 0.00 39.35 3.62
2957 3200 0.815615 CTAGAGCCGCCATTGGTTCC 60.816 60.000 4.26 0.00 39.85 3.62
2958 3201 1.271840 TAGAGCCGCCATTGGTTCCT 61.272 55.000 4.26 0.00 39.85 3.36
2959 3202 1.223487 GAGCCGCCATTGGTTCCTA 59.777 57.895 4.26 0.00 33.50 2.94
2986 3229 2.036958 TTCATGATTTCCGGCGATGT 57.963 45.000 9.30 0.00 0.00 3.06
2987 3230 1.298602 TCATGATTTCCGGCGATGTG 58.701 50.000 9.30 0.00 0.00 3.21
3010 3253 1.117142 TCCGTGGGAGGAGACGTTTT 61.117 55.000 0.00 0.00 34.92 2.43
3073 3333 2.555199 CCTTTCGAAGGTGCTCATAGG 58.445 52.381 6.53 0.00 43.95 2.57
3079 3339 2.169769 CGAAGGTGCTCATAGGGGTAAA 59.830 50.000 0.00 0.00 0.00 2.01
3084 3344 3.532542 GTGCTCATAGGGGTAAAGTGTC 58.467 50.000 0.00 0.00 0.00 3.67
3090 3350 5.282129 TCATAGGGGTAAAGTGTCCATGTA 58.718 41.667 0.00 0.00 0.00 2.29
3102 3362 6.156748 AGTGTCCATGTATGCGTTTATAGA 57.843 37.500 0.00 0.00 0.00 1.98
3103 3363 6.578944 AGTGTCCATGTATGCGTTTATAGAA 58.421 36.000 0.00 0.00 0.00 2.10
3108 3368 6.923508 TCCATGTATGCGTTTATAGAAGTGAG 59.076 38.462 0.00 0.00 0.00 3.51
3282 3545 6.360329 GTCGCGGATGGTAATTTTAGTTATG 58.640 40.000 6.13 0.00 0.00 1.90
3290 3553 9.463443 GATGGTAATTTTAGTTATGAACATGGC 57.537 33.333 0.00 0.00 0.00 4.40
3313 3576 6.474751 GGCAAATTCATCTTAGTTCATTCTGC 59.525 38.462 0.00 0.00 0.00 4.26
3328 3591 4.710865 TCATTCTGCATAAGGAAATTGCCA 59.289 37.500 4.92 0.00 35.51 4.92
3403 3666 5.490139 ACATTCGATTTGCCATGACTAAG 57.510 39.130 0.00 0.00 0.00 2.18
3409 3672 5.304357 TCGATTTGCCATGACTAAGGATCTA 59.696 40.000 0.00 0.00 0.00 1.98
3414 3677 4.161565 TGCCATGACTAAGGATCTAACGTT 59.838 41.667 5.88 5.88 0.00 3.99
3472 3735 1.600023 TAGTTTGGGCAACTCCAACG 58.400 50.000 0.00 0.00 42.62 4.10
3513 3776 0.952280 GCATCTGTCCGTCGATAGGA 59.048 55.000 8.31 8.31 34.99 2.94
3518 3781 2.093075 TCTGTCCGTCGATAGGAAGACT 60.093 50.000 13.19 0.00 39.84 3.24
3525 3788 3.465871 GTCGATAGGAAGACTAGTCCGT 58.534 50.000 19.38 7.83 40.36 4.69
3531 3794 1.204941 GGAAGACTAGTCCGTGCACAT 59.795 52.381 19.38 1.74 0.00 3.21
3577 3840 3.573538 ACTGCCTGCACACATTTCAAATA 59.426 39.130 0.00 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 8.594550 GGGCCTATAAGATAATCAACTTCAGTA 58.405 37.037 0.84 0.00 0.00 2.74
7 8 7.454225 GGGCCTATAAGATAATCAACTTCAGT 58.546 38.462 0.84 0.00 0.00 3.41
8 9 6.881602 GGGGCCTATAAGATAATCAACTTCAG 59.118 42.308 0.84 0.00 0.00 3.02
9 10 6.520061 CGGGGCCTATAAGATAATCAACTTCA 60.520 42.308 0.84 0.00 0.00 3.02
10 11 5.875359 CGGGGCCTATAAGATAATCAACTTC 59.125 44.000 0.84 0.00 0.00 3.01
11 12 5.280521 CCGGGGCCTATAAGATAATCAACTT 60.281 44.000 0.84 0.00 0.00 2.66
12 13 4.225267 CCGGGGCCTATAAGATAATCAACT 59.775 45.833 0.84 0.00 0.00 3.16
13 14 4.019591 ACCGGGGCCTATAAGATAATCAAC 60.020 45.833 6.32 0.00 0.00 3.18
14 15 4.172807 ACCGGGGCCTATAAGATAATCAA 58.827 43.478 6.32 0.00 0.00 2.57
15 16 3.798515 ACCGGGGCCTATAAGATAATCA 58.201 45.455 6.32 0.00 0.00 2.57
16 17 4.838904 AACCGGGGCCTATAAGATAATC 57.161 45.455 6.32 0.00 0.00 1.75
17 18 5.347978 AGTAACCGGGGCCTATAAGATAAT 58.652 41.667 6.32 0.00 0.00 1.28
18 19 4.755437 AGTAACCGGGGCCTATAAGATAA 58.245 43.478 6.32 0.00 0.00 1.75
19 20 4.202706 TGAGTAACCGGGGCCTATAAGATA 60.203 45.833 6.32 0.00 0.00 1.98
20 21 3.171528 GAGTAACCGGGGCCTATAAGAT 58.828 50.000 6.32 0.00 0.00 2.40
21 22 2.091166 TGAGTAACCGGGGCCTATAAGA 60.091 50.000 6.32 0.00 0.00 2.10
22 23 2.322658 TGAGTAACCGGGGCCTATAAG 58.677 52.381 6.32 0.00 0.00 1.73
23 24 2.475339 TGAGTAACCGGGGCCTATAA 57.525 50.000 6.32 0.00 0.00 0.98
24 25 2.708037 ATGAGTAACCGGGGCCTATA 57.292 50.000 6.32 0.00 0.00 1.31
25 26 1.815757 AATGAGTAACCGGGGCCTAT 58.184 50.000 6.32 0.00 0.00 2.57
26 27 1.587066 AAATGAGTAACCGGGGCCTA 58.413 50.000 6.32 0.00 0.00 3.93
27 28 0.702316 AAAATGAGTAACCGGGGCCT 59.298 50.000 6.32 0.00 0.00 5.19
28 29 2.294979 CTAAAATGAGTAACCGGGGCC 58.705 52.381 6.32 0.00 0.00 5.80
29 30 1.674441 GCTAAAATGAGTAACCGGGGC 59.326 52.381 6.32 0.00 0.00 5.80
30 31 1.937899 CGCTAAAATGAGTAACCGGGG 59.062 52.381 6.32 0.00 0.00 5.73
31 32 1.937899 CCGCTAAAATGAGTAACCGGG 59.062 52.381 6.32 0.00 0.00 5.73
32 33 1.329599 GCCGCTAAAATGAGTAACCGG 59.670 52.381 0.00 0.00 37.64 5.28
33 34 1.005347 CGCCGCTAAAATGAGTAACCG 60.005 52.381 0.00 0.00 0.00 4.44
34 35 1.329599 CCGCCGCTAAAATGAGTAACC 59.670 52.381 0.00 0.00 0.00 2.85
35 36 1.267882 GCCGCCGCTAAAATGAGTAAC 60.268 52.381 0.00 0.00 0.00 2.50
36 37 1.011333 GCCGCCGCTAAAATGAGTAA 58.989 50.000 0.00 0.00 0.00 2.24
37 38 1.149361 CGCCGCCGCTAAAATGAGTA 61.149 55.000 0.00 0.00 0.00 2.59
38 39 2.461110 CGCCGCCGCTAAAATGAGT 61.461 57.895 0.00 0.00 0.00 3.41
39 40 2.324477 CGCCGCCGCTAAAATGAG 59.676 61.111 0.00 0.00 0.00 2.90
40 41 2.435234 ACGCCGCCGCTAAAATGA 60.435 55.556 0.00 0.00 38.22 2.57
41 42 2.022762 GACGCCGCCGCTAAAATG 59.977 61.111 0.00 0.00 38.22 2.32
42 43 1.373590 ATTGACGCCGCCGCTAAAAT 61.374 50.000 0.00 0.00 38.22 1.82
43 44 2.036006 ATTGACGCCGCCGCTAAAA 61.036 52.632 0.00 0.00 38.22 1.52
44 45 2.435234 ATTGACGCCGCCGCTAAA 60.435 55.556 0.00 0.00 38.22 1.85
45 46 3.192230 CATTGACGCCGCCGCTAA 61.192 61.111 0.00 0.00 38.22 3.09
49 50 3.261951 CTACCATTGACGCCGCCG 61.262 66.667 0.00 0.00 41.14 6.46
50 51 1.702491 GAACTACCATTGACGCCGCC 61.702 60.000 0.00 0.00 0.00 6.13
51 52 1.713830 GAACTACCATTGACGCCGC 59.286 57.895 0.00 0.00 0.00 6.53
52 53 1.418342 CCGAACTACCATTGACGCCG 61.418 60.000 0.00 0.00 0.00 6.46
53 54 0.390735 ACCGAACTACCATTGACGCC 60.391 55.000 0.00 0.00 0.00 5.68
54 55 0.719465 CACCGAACTACCATTGACGC 59.281 55.000 0.00 0.00 0.00 5.19
55 56 1.990563 GTCACCGAACTACCATTGACG 59.009 52.381 0.00 0.00 0.00 4.35
56 57 2.344025 GGTCACCGAACTACCATTGAC 58.656 52.381 0.00 0.00 33.28 3.18
57 58 1.276989 GGGTCACCGAACTACCATTGA 59.723 52.381 0.00 0.00 34.83 2.57
58 59 1.002659 TGGGTCACCGAACTACCATTG 59.997 52.381 0.00 0.00 40.75 2.82
59 60 1.354101 TGGGTCACCGAACTACCATT 58.646 50.000 0.00 0.00 40.75 3.16
60 61 1.278127 CTTGGGTCACCGAACTACCAT 59.722 52.381 0.00 0.00 40.75 3.55
61 62 0.682852 CTTGGGTCACCGAACTACCA 59.317 55.000 0.00 0.00 40.75 3.25
62 63 0.971386 TCTTGGGTCACCGAACTACC 59.029 55.000 0.00 0.00 40.75 3.18
63 64 2.685100 CTTCTTGGGTCACCGAACTAC 58.315 52.381 0.00 0.00 40.75 2.73
64 65 1.001633 GCTTCTTGGGTCACCGAACTA 59.998 52.381 0.00 0.00 40.75 2.24
65 66 0.250338 GCTTCTTGGGTCACCGAACT 60.250 55.000 0.00 0.00 40.75 3.01
66 67 0.250338 AGCTTCTTGGGTCACCGAAC 60.250 55.000 0.00 0.00 40.75 3.95
67 68 0.472471 AAGCTTCTTGGGTCACCGAA 59.528 50.000 0.00 0.00 40.75 4.30
68 69 0.250295 CAAGCTTCTTGGGTCACCGA 60.250 55.000 0.00 0.00 40.75 4.69
69 70 0.250295 TCAAGCTTCTTGGGTCACCG 60.250 55.000 0.00 0.00 40.75 4.94
70 71 1.239347 GTCAAGCTTCTTGGGTCACC 58.761 55.000 0.00 0.00 37.24 4.02
71 72 0.868406 CGTCAAGCTTCTTGGGTCAC 59.132 55.000 0.00 0.00 0.00 3.67
72 73 0.468226 ACGTCAAGCTTCTTGGGTCA 59.532 50.000 0.00 0.00 0.00 4.02
73 74 2.450609 TACGTCAAGCTTCTTGGGTC 57.549 50.000 0.00 0.00 0.00 4.46
74 75 2.922740 TTACGTCAAGCTTCTTGGGT 57.077 45.000 0.00 7.70 0.00 4.51
75 76 4.766404 AAATTACGTCAAGCTTCTTGGG 57.234 40.909 0.00 2.82 0.00 4.12
76 77 5.977129 ACAAAAATTACGTCAAGCTTCTTGG 59.023 36.000 0.00 0.00 0.00 3.61
77 78 6.690957 TGACAAAAATTACGTCAAGCTTCTTG 59.309 34.615 0.00 0.37 36.75 3.02
78 79 6.791303 TGACAAAAATTACGTCAAGCTTCTT 58.209 32.000 0.00 0.00 36.75 2.52
79 80 6.371809 TGACAAAAATTACGTCAAGCTTCT 57.628 33.333 0.00 0.00 36.75 2.85
80 81 6.636850 ACATGACAAAAATTACGTCAAGCTTC 59.363 34.615 0.00 0.00 42.53 3.86
81 82 6.503524 ACATGACAAAAATTACGTCAAGCTT 58.496 32.000 0.00 0.00 42.53 3.74
82 83 6.072112 ACATGACAAAAATTACGTCAAGCT 57.928 33.333 0.00 0.00 42.53 3.74
83 84 6.747659 AACATGACAAAAATTACGTCAAGC 57.252 33.333 0.00 0.00 42.53 4.01
84 85 8.334016 TCAAACATGACAAAAATTACGTCAAG 57.666 30.769 0.00 6.93 42.53 3.02
85 86 8.689251 TTCAAACATGACAAAAATTACGTCAA 57.311 26.923 0.00 0.00 42.53 3.18
86 87 7.971168 ACTTCAAACATGACAAAAATTACGTCA 59.029 29.630 0.00 6.89 43.35 4.35
87 88 8.259194 CACTTCAAACATGACAAAAATTACGTC 58.741 33.333 0.00 0.00 0.00 4.34
88 89 7.253950 GCACTTCAAACATGACAAAAATTACGT 60.254 33.333 0.00 0.00 0.00 3.57
89 90 7.043458 AGCACTTCAAACATGACAAAAATTACG 60.043 33.333 0.00 0.00 0.00 3.18
90 91 8.130307 AGCACTTCAAACATGACAAAAATTAC 57.870 30.769 0.00 0.00 0.00 1.89
91 92 8.715191 AAGCACTTCAAACATGACAAAAATTA 57.285 26.923 0.00 0.00 0.00 1.40
92 93 7.614124 AAGCACTTCAAACATGACAAAAATT 57.386 28.000 0.00 0.00 0.00 1.82
93 94 7.333921 TCAAAGCACTTCAAACATGACAAAAAT 59.666 29.630 0.00 0.00 0.00 1.82
94 95 6.648310 TCAAAGCACTTCAAACATGACAAAAA 59.352 30.769 0.00 0.00 0.00 1.94
95 96 6.162079 TCAAAGCACTTCAAACATGACAAAA 58.838 32.000 0.00 0.00 0.00 2.44
96 97 5.718146 TCAAAGCACTTCAAACATGACAAA 58.282 33.333 0.00 0.00 0.00 2.83
97 98 5.321959 TCAAAGCACTTCAAACATGACAA 57.678 34.783 0.00 0.00 0.00 3.18
98 99 4.979943 TCAAAGCACTTCAAACATGACA 57.020 36.364 0.00 0.00 0.00 3.58
99 100 5.343249 AGTTCAAAGCACTTCAAACATGAC 58.657 37.500 0.00 0.00 0.00 3.06
100 101 5.581126 AGTTCAAAGCACTTCAAACATGA 57.419 34.783 0.00 0.00 0.00 3.07
101 102 6.198966 GGTAAGTTCAAAGCACTTCAAACATG 59.801 38.462 0.00 0.00 35.95 3.21
102 103 6.273071 GGTAAGTTCAAAGCACTTCAAACAT 58.727 36.000 9.28 2.57 35.95 2.71
103 104 5.393678 GGGTAAGTTCAAAGCACTTCAAACA 60.394 40.000 9.28 0.00 35.95 2.83
104 105 5.041287 GGGTAAGTTCAAAGCACTTCAAAC 58.959 41.667 0.00 1.57 35.95 2.93
105 106 4.098807 GGGGTAAGTTCAAAGCACTTCAAA 59.901 41.667 0.00 0.00 35.95 2.69
106 107 3.634910 GGGGTAAGTTCAAAGCACTTCAA 59.365 43.478 0.00 0.00 35.95 2.69
107 108 3.219281 GGGGTAAGTTCAAAGCACTTCA 58.781 45.455 0.00 0.00 35.95 3.02
108 109 2.225727 CGGGGTAAGTTCAAAGCACTTC 59.774 50.000 0.00 0.00 35.95 3.01
109 110 2.227194 CGGGGTAAGTTCAAAGCACTT 58.773 47.619 0.00 0.00 38.13 3.16
110 111 1.892209 CGGGGTAAGTTCAAAGCACT 58.108 50.000 0.00 0.00 0.00 4.40
111 112 0.240145 GCGGGGTAAGTTCAAAGCAC 59.760 55.000 0.00 0.00 0.00 4.40
112 113 0.179015 TGCGGGGTAAGTTCAAAGCA 60.179 50.000 0.00 0.00 0.00 3.91
113 114 0.955905 TTGCGGGGTAAGTTCAAAGC 59.044 50.000 0.00 0.00 0.00 3.51
114 115 3.719173 TTTTGCGGGGTAAGTTCAAAG 57.281 42.857 0.00 0.00 0.00 2.77
137 138 9.959749 TCTATTACGAAAGTTCAAAGCATTTTT 57.040 25.926 0.00 0.00 46.40 1.94
138 139 9.959749 TTCTATTACGAAAGTTCAAAGCATTTT 57.040 25.926 0.00 0.00 46.40 1.82
139 140 9.394477 GTTCTATTACGAAAGTTCAAAGCATTT 57.606 29.630 0.00 0.00 46.40 2.32
140 141 8.784043 AGTTCTATTACGAAAGTTCAAAGCATT 58.216 29.630 0.00 0.00 46.40 3.56
141 142 8.324163 AGTTCTATTACGAAAGTTCAAAGCAT 57.676 30.769 0.00 0.00 46.40 3.79
142 143 7.724305 AGTTCTATTACGAAAGTTCAAAGCA 57.276 32.000 0.00 0.00 46.40 3.91
143 144 8.923683 ACTAGTTCTATTACGAAAGTTCAAAGC 58.076 33.333 0.00 0.00 46.40 3.51
152 153 8.642020 GCGAAAAAGACTAGTTCTATTACGAAA 58.358 33.333 0.00 0.00 32.51 3.46
153 154 8.025445 AGCGAAAAAGACTAGTTCTATTACGAA 58.975 33.333 0.00 0.00 32.51 3.85
154 155 7.533426 AGCGAAAAAGACTAGTTCTATTACGA 58.467 34.615 0.00 0.00 32.51 3.43
155 156 7.737525 AGCGAAAAAGACTAGTTCTATTACG 57.262 36.000 0.00 0.19 32.51 3.18
159 160 9.485206 TGTTTTAGCGAAAAAGACTAGTTCTAT 57.515 29.630 6.29 0.00 37.74 1.98
160 161 8.876275 TGTTTTAGCGAAAAAGACTAGTTCTA 57.124 30.769 6.29 0.00 37.74 2.10
161 162 7.781548 TGTTTTAGCGAAAAAGACTAGTTCT 57.218 32.000 6.29 0.00 37.74 3.01
162 163 8.831000 TTTGTTTTAGCGAAAAAGACTAGTTC 57.169 30.769 6.29 0.00 37.74 3.01
163 164 9.797556 ATTTTGTTTTAGCGAAAAAGACTAGTT 57.202 25.926 6.29 0.00 37.74 2.24
164 165 9.447040 GATTTTGTTTTAGCGAAAAAGACTAGT 57.553 29.630 6.29 0.00 37.74 2.57
165 166 9.665264 AGATTTTGTTTTAGCGAAAAAGACTAG 57.335 29.630 6.29 0.00 37.74 2.57
166 167 9.445786 CAGATTTTGTTTTAGCGAAAAAGACTA 57.554 29.630 6.29 0.00 37.74 2.59
167 168 7.973944 ACAGATTTTGTTTTAGCGAAAAAGACT 59.026 29.630 6.29 0.00 37.74 3.24
168 169 8.115491 ACAGATTTTGTTTTAGCGAAAAAGAC 57.885 30.769 6.29 0.00 37.74 3.01
169 170 9.228636 GTACAGATTTTGTTTTAGCGAAAAAGA 57.771 29.630 6.29 0.02 41.29 2.52
170 171 9.015577 TGTACAGATTTTGTTTTAGCGAAAAAG 57.984 29.630 6.29 0.00 41.29 2.27
171 172 8.912787 TGTACAGATTTTGTTTTAGCGAAAAA 57.087 26.923 6.29 1.24 41.29 1.94
172 173 8.912787 TTGTACAGATTTTGTTTTAGCGAAAA 57.087 26.923 0.10 0.10 41.29 2.29
174 175 9.601971 GTATTGTACAGATTTTGTTTTAGCGAA 57.398 29.630 0.00 0.00 41.29 4.70
175 176 7.953173 CGTATTGTACAGATTTTGTTTTAGCGA 59.047 33.333 0.00 0.00 41.29 4.93
176 177 7.742963 ACGTATTGTACAGATTTTGTTTTAGCG 59.257 33.333 0.00 0.00 41.29 4.26
177 178 8.837059 CACGTATTGTACAGATTTTGTTTTAGC 58.163 33.333 0.00 0.00 41.29 3.09
178 179 9.872757 ACACGTATTGTACAGATTTTGTTTTAG 57.127 29.630 0.00 0.00 41.29 1.85
179 180 9.866936 GACACGTATTGTACAGATTTTGTTTTA 57.133 29.630 0.00 0.00 39.17 1.52
180 181 8.399425 TGACACGTATTGTACAGATTTTGTTTT 58.601 29.630 0.00 0.00 39.17 2.43
181 182 7.921787 TGACACGTATTGTACAGATTTTGTTT 58.078 30.769 0.00 0.00 39.17 2.83
182 183 7.485418 TGACACGTATTGTACAGATTTTGTT 57.515 32.000 0.00 0.00 39.17 2.83
183 184 7.667043 ATGACACGTATTGTACAGATTTTGT 57.333 32.000 0.00 0.00 39.17 2.83
184 185 8.652463 TGTATGACACGTATTGTACAGATTTTG 58.348 33.333 0.00 0.00 39.17 2.44
185 186 8.766000 TGTATGACACGTATTGTACAGATTTT 57.234 30.769 0.00 0.00 39.17 1.82
186 187 8.653338 GTTGTATGACACGTATTGTACAGATTT 58.347 33.333 0.00 0.00 39.17 2.17
187 188 7.277098 GGTTGTATGACACGTATTGTACAGATT 59.723 37.037 0.00 0.00 39.17 2.40
188 189 6.755141 GGTTGTATGACACGTATTGTACAGAT 59.245 38.462 0.00 0.00 39.17 2.90
189 190 6.094719 GGTTGTATGACACGTATTGTACAGA 58.905 40.000 0.00 0.00 39.17 3.41
190 191 5.004061 CGGTTGTATGACACGTATTGTACAG 59.996 44.000 0.00 0.00 39.17 2.74
191 192 4.858140 CGGTTGTATGACACGTATTGTACA 59.142 41.667 0.00 0.00 39.17 2.90
192 193 4.858692 ACGGTTGTATGACACGTATTGTAC 59.141 41.667 0.00 0.00 39.17 2.90
193 194 5.058149 ACGGTTGTATGACACGTATTGTA 57.942 39.130 0.00 0.00 39.17 2.41
194 195 3.916761 ACGGTTGTATGACACGTATTGT 58.083 40.909 0.00 0.00 43.10 2.71
195 196 4.171005 AGACGGTTGTATGACACGTATTG 58.829 43.478 0.00 0.00 37.96 1.90
196 197 4.445452 AGACGGTTGTATGACACGTATT 57.555 40.909 0.00 0.00 37.96 1.89
197 198 4.445452 AAGACGGTTGTATGACACGTAT 57.555 40.909 0.00 0.00 37.96 3.06
214 215 2.194201 TGATGGGACCCGAAAAAGAC 57.806 50.000 5.91 0.00 0.00 3.01
224 225 3.056821 GTGGCTAAAAGTTTGATGGGACC 60.057 47.826 0.00 0.00 0.00 4.46
226 227 4.112634 AGTGGCTAAAAGTTTGATGGGA 57.887 40.909 0.00 0.00 0.00 4.37
315 316 7.475771 TTTGTACAAAGCATTAGCCTTTTTG 57.524 32.000 17.01 0.00 43.56 2.44
386 388 1.070376 TGCTCCGTCGTATTCGTATCG 60.070 52.381 0.00 0.00 38.33 2.92
494 499 5.004440 CGTTGAACGTACTATGAATCTGGTG 59.996 44.000 9.94 0.00 36.74 4.17
551 562 1.679032 GGCTGATTTTGCTACCTCGGT 60.679 52.381 0.00 0.00 0.00 4.69
652 663 1.167851 CCGTGAACTGTGATGCCATT 58.832 50.000 0.00 0.00 0.00 3.16
678 689 1.953231 CTCCTCCATGCTCACGCTGA 61.953 60.000 0.00 0.00 36.97 4.26
679 690 1.521010 CTCCTCCATGCTCACGCTG 60.521 63.158 0.00 0.00 36.97 5.18
680 691 2.729479 CCTCCTCCATGCTCACGCT 61.729 63.158 0.00 0.00 36.97 5.07
681 692 2.202987 CCTCCTCCATGCTCACGC 60.203 66.667 0.00 0.00 0.00 5.34
682 693 1.142748 GTCCTCCTCCATGCTCACG 59.857 63.158 0.00 0.00 0.00 4.35
882 905 2.433664 GGGCACGTGGTAGGTTCG 60.434 66.667 18.88 0.00 0.00 3.95
1031 1058 9.775854 TCATACTAGTAACTAATCTCGTAGCTT 57.224 33.333 6.70 0.00 0.00 3.74
1037 1064 8.178964 GCTCCATCATACTAGTAACTAATCTCG 58.821 40.741 6.70 0.00 0.00 4.04
1041 1068 7.575909 CGCAGCTCCATCATACTAGTAACTAAT 60.576 40.741 6.70 0.00 0.00 1.73
1042 1069 6.294010 CGCAGCTCCATCATACTAGTAACTAA 60.294 42.308 6.70 0.00 0.00 2.24
1043 1070 5.181433 CGCAGCTCCATCATACTAGTAACTA 59.819 44.000 6.70 0.00 0.00 2.24
1044 1071 4.022762 CGCAGCTCCATCATACTAGTAACT 60.023 45.833 6.70 0.00 0.00 2.24
1046 1073 4.505313 CGCAGCTCCATCATACTAGTAA 57.495 45.455 6.70 0.00 0.00 2.24
1143 1192 4.690719 CACAGGTACCCGGCGCAA 62.691 66.667 10.83 0.00 0.00 4.85
1510 1598 3.292460 AGAAGAGGTAGTCCATCTTCCG 58.708 50.000 6.51 0.00 42.30 4.30
1557 1645 1.332180 CGAAGCGCGTAAAGTCGACA 61.332 55.000 19.50 0.00 33.63 4.35
1675 1778 1.094073 TACGAGGAGCTGTAGGTCGC 61.094 60.000 0.00 0.03 43.03 5.19
1725 1828 2.328099 GGCAAAGGCGAGGTGACTG 61.328 63.158 0.00 0.00 39.75 3.51
1730 1833 2.282462 CCAAGGCAAAGGCGAGGT 60.282 61.111 0.00 0.00 42.47 3.85
1761 1864 4.766088 GGCAAGCAAGAAGGCGCG 62.766 66.667 0.00 0.00 39.27 6.86
1762 1865 4.766088 CGGCAAGCAAGAAGGCGC 62.766 66.667 0.00 0.00 44.06 6.53
1783 1886 4.626042 GATCGATCAGCAAGTTGGTCTAT 58.374 43.478 20.52 1.86 0.00 1.98
1917 2052 2.958016 GTACGCGGGCATGTACGG 60.958 66.667 12.47 3.66 32.49 4.02
2231 2466 2.338500 CCAAAGTCGAGCAAGTAGGAC 58.662 52.381 0.00 0.00 0.00 3.85
2341 2576 3.762823 GGATGGATTACTAGTCCCCTACG 59.237 52.174 0.00 0.00 34.76 3.51
2342 2577 4.748701 TGGATGGATTACTAGTCCCCTAC 58.251 47.826 0.00 0.00 34.76 3.18
2343 2578 5.162760 ACATGGATGGATTACTAGTCCCCTA 60.163 44.000 0.00 0.00 34.76 3.53
2344 2579 4.171234 CATGGATGGATTACTAGTCCCCT 58.829 47.826 0.00 0.00 34.76 4.79
2354 2589 4.840680 CAGGAGGAGTACATGGATGGATTA 59.159 45.833 0.00 0.00 0.00 1.75
2511 2754 9.725019 AGAATCGCCATAAACATAGATGATAAA 57.275 29.630 0.00 0.00 0.00 1.40
2522 2765 5.185454 AGATGAACAGAATCGCCATAAACA 58.815 37.500 0.00 0.00 0.00 2.83
2609 2852 9.446963 GAACGGAATTCATTGCAATTTGCAGAG 62.447 40.741 22.14 18.21 44.92 3.35
2673 2916 6.291060 CGCTTTTATAAAGCTAATTTGGTGCG 60.291 38.462 18.65 0.00 40.94 5.34
2719 2962 1.068741 GGATGTCGCCGTTCCTCTAAT 59.931 52.381 0.00 0.00 0.00 1.73
2730 2973 4.195334 ATGGGCTGGGATGTCGCC 62.195 66.667 0.00 0.00 43.03 5.54
2732 2975 1.227764 CTGATGGGCTGGGATGTCG 60.228 63.158 0.00 0.00 0.00 4.35
2751 2994 6.796785 ATGCAAGCATTAGGATTTAAACCT 57.203 33.333 0.86 12.17 41.05 3.50
2756 2999 7.041107 GGAACAAATGCAAGCATTAGGATTTA 58.959 34.615 19.45 0.00 44.86 1.40
2764 3007 7.751450 CCTGACAGGAACAAATGCAAGCATT 62.751 44.000 17.22 14.13 42.25 3.56
2770 3013 1.619654 CCCTGACAGGAACAAATGCA 58.380 50.000 23.77 0.00 37.67 3.96
2788 3031 2.393144 GAATACCCCTACTGCCGCCC 62.393 65.000 0.00 0.00 0.00 6.13
2789 3032 1.070957 GAATACCCCTACTGCCGCC 59.929 63.158 0.00 0.00 0.00 6.13
2790 3033 0.468648 AAGAATACCCCTACTGCCGC 59.531 55.000 0.00 0.00 0.00 6.53
2791 3034 1.760613 TCAAGAATACCCCTACTGCCG 59.239 52.381 0.00 0.00 0.00 5.69
2792 3035 2.772515 ACTCAAGAATACCCCTACTGCC 59.227 50.000 0.00 0.00 0.00 4.85
2793 3036 3.707102 AGACTCAAGAATACCCCTACTGC 59.293 47.826 0.00 0.00 0.00 4.40
2794 3037 5.422331 TGAAGACTCAAGAATACCCCTACTG 59.578 44.000 0.00 0.00 0.00 2.74
2795 3038 5.590818 TGAAGACTCAAGAATACCCCTACT 58.409 41.667 0.00 0.00 0.00 2.57
2796 3039 5.934402 TGAAGACTCAAGAATACCCCTAC 57.066 43.478 0.00 0.00 0.00 3.18
2797 3040 5.964477 ACATGAAGACTCAAGAATACCCCTA 59.036 40.000 0.00 0.00 34.49 3.53
2798 3041 4.785376 ACATGAAGACTCAAGAATACCCCT 59.215 41.667 0.00 0.00 34.49 4.79
2799 3042 5.104259 ACATGAAGACTCAAGAATACCCC 57.896 43.478 0.00 0.00 34.49 4.95
2804 3047 9.159254 TGGGTATATACATGAAGACTCAAGAAT 57.841 33.333 14.70 0.00 34.49 2.40
2805 3048 8.547481 TGGGTATATACATGAAGACTCAAGAA 57.453 34.615 14.70 0.00 34.49 2.52
2806 3049 8.588472 CATGGGTATATACATGAAGACTCAAGA 58.412 37.037 14.70 0.00 45.55 3.02
2807 3050 8.768957 CATGGGTATATACATGAAGACTCAAG 57.231 38.462 14.70 0.00 45.55 3.02
2844 3087 6.974965 TGTTTTGCCAAAATCAACACTTTTT 58.025 28.000 5.81 0.00 32.22 1.94
2845 3088 6.206438 ACTGTTTTGCCAAAATCAACACTTTT 59.794 30.769 5.81 0.00 32.22 2.27
2846 3089 5.704978 ACTGTTTTGCCAAAATCAACACTTT 59.295 32.000 5.81 0.00 32.22 2.66
2847 3090 5.122082 CACTGTTTTGCCAAAATCAACACTT 59.878 36.000 5.81 0.00 32.22 3.16
2848 3091 4.630940 CACTGTTTTGCCAAAATCAACACT 59.369 37.500 5.81 0.00 32.22 3.55
2849 3092 4.201802 CCACTGTTTTGCCAAAATCAACAC 60.202 41.667 5.81 0.00 32.22 3.32
2850 3093 3.937706 CCACTGTTTTGCCAAAATCAACA 59.062 39.130 5.81 0.00 32.22 3.33
2851 3094 3.242706 GCCACTGTTTTGCCAAAATCAAC 60.243 43.478 5.81 0.00 32.22 3.18
2852 3095 2.941720 GCCACTGTTTTGCCAAAATCAA 59.058 40.909 5.81 0.00 32.22 2.57
2853 3096 2.093288 TGCCACTGTTTTGCCAAAATCA 60.093 40.909 5.81 5.62 32.22 2.57
2854 3097 2.559440 TGCCACTGTTTTGCCAAAATC 58.441 42.857 5.81 1.28 32.22 2.17
2855 3098 2.706339 TGCCACTGTTTTGCCAAAAT 57.294 40.000 5.81 0.00 32.22 1.82
2856 3099 2.479566 TTGCCACTGTTTTGCCAAAA 57.520 40.000 0.00 0.00 0.00 2.44
2857 3100 2.706339 ATTGCCACTGTTTTGCCAAA 57.294 40.000 0.00 0.00 0.00 3.28
2858 3101 2.706339 AATTGCCACTGTTTTGCCAA 57.294 40.000 0.00 0.00 0.00 4.52
2859 3102 2.706339 AAATTGCCACTGTTTTGCCA 57.294 40.000 0.00 0.00 0.00 4.92
2860 3103 2.941720 TGAAAATTGCCACTGTTTTGCC 59.058 40.909 0.00 0.00 0.00 4.52
2861 3104 4.612932 TTGAAAATTGCCACTGTTTTGC 57.387 36.364 0.00 0.00 0.00 3.68
2862 3105 7.044836 CGATTTTTGAAAATTGCCACTGTTTTG 60.045 33.333 3.45 0.00 38.64 2.44
2863 3106 6.966066 CGATTTTTGAAAATTGCCACTGTTTT 59.034 30.769 3.45 0.00 38.64 2.43
2864 3107 6.314896 TCGATTTTTGAAAATTGCCACTGTTT 59.685 30.769 10.31 0.00 38.64 2.83
2865 3108 5.814705 TCGATTTTTGAAAATTGCCACTGTT 59.185 32.000 10.31 0.00 38.64 3.16
2866 3109 5.234116 GTCGATTTTTGAAAATTGCCACTGT 59.766 36.000 10.31 0.00 38.64 3.55
2867 3110 5.233902 TGTCGATTTTTGAAAATTGCCACTG 59.766 36.000 10.31 0.00 38.64 3.66
2868 3111 5.355596 TGTCGATTTTTGAAAATTGCCACT 58.644 33.333 10.31 0.00 38.64 4.00
2869 3112 5.649602 TGTCGATTTTTGAAAATTGCCAC 57.350 34.783 10.31 6.49 38.64 5.01
2870 3113 6.481313 TCATTGTCGATTTTTGAAAATTGCCA 59.519 30.769 10.31 4.41 38.64 4.92
2871 3114 6.886307 TCATTGTCGATTTTTGAAAATTGCC 58.114 32.000 10.31 2.19 38.64 4.52
2872 3115 8.938047 AATCATTGTCGATTTTTGAAAATTGC 57.062 26.923 10.31 7.36 38.64 3.56
2883 3126 9.258826 TCATTTTGTCAAAATCATTGTCGATTT 57.741 25.926 18.62 0.00 45.35 2.17
2884 3127 8.815141 TCATTTTGTCAAAATCATTGTCGATT 57.185 26.923 18.62 0.00 38.97 3.34
2885 3128 8.815141 TTCATTTTGTCAAAATCATTGTCGAT 57.185 26.923 18.62 0.00 38.97 3.59
2886 3129 8.815141 ATTCATTTTGTCAAAATCATTGTCGA 57.185 26.923 18.62 9.83 38.97 4.20
2887 3130 9.941991 GTATTCATTTTGTCAAAATCATTGTCG 57.058 29.630 18.62 7.92 38.97 4.35
2893 3136 9.978044 TCATGTGTATTCATTTTGTCAAAATCA 57.022 25.926 18.62 12.76 38.97 2.57
2898 3141 9.853555 GGTATTCATGTGTATTCATTTTGTCAA 57.146 29.630 0.00 0.00 0.00 3.18
2899 3142 8.465999 GGGTATTCATGTGTATTCATTTTGTCA 58.534 33.333 0.00 0.00 0.00 3.58
2900 3143 7.643764 CGGGTATTCATGTGTATTCATTTTGTC 59.356 37.037 0.00 0.00 0.00 3.18
2901 3144 7.416213 CCGGGTATTCATGTGTATTCATTTTGT 60.416 37.037 0.00 0.00 0.00 2.83
2902 3145 6.917477 CCGGGTATTCATGTGTATTCATTTTG 59.083 38.462 0.00 0.00 0.00 2.44
2903 3146 6.605594 ACCGGGTATTCATGTGTATTCATTTT 59.394 34.615 6.32 0.00 0.00 1.82
2904 3147 6.126409 ACCGGGTATTCATGTGTATTCATTT 58.874 36.000 6.32 0.00 0.00 2.32
2905 3148 5.690865 ACCGGGTATTCATGTGTATTCATT 58.309 37.500 6.32 0.00 0.00 2.57
2906 3149 5.304686 ACCGGGTATTCATGTGTATTCAT 57.695 39.130 6.32 0.00 0.00 2.57
2907 3150 4.764050 ACCGGGTATTCATGTGTATTCA 57.236 40.909 6.32 0.00 0.00 2.57
2908 3151 4.261031 GCAACCGGGTATTCATGTGTATTC 60.261 45.833 6.32 0.00 0.00 1.75
2909 3152 3.630312 GCAACCGGGTATTCATGTGTATT 59.370 43.478 6.32 0.00 0.00 1.89
2910 3153 3.211045 GCAACCGGGTATTCATGTGTAT 58.789 45.455 6.32 0.00 0.00 2.29
2911 3154 2.027100 TGCAACCGGGTATTCATGTGTA 60.027 45.455 6.32 0.00 0.00 2.90
2912 3155 1.271652 TGCAACCGGGTATTCATGTGT 60.272 47.619 6.32 0.00 0.00 3.72
2913 3156 1.458398 TGCAACCGGGTATTCATGTG 58.542 50.000 6.32 0.00 0.00 3.21
2914 3157 2.208132 TTGCAACCGGGTATTCATGT 57.792 45.000 6.32 0.00 0.00 3.21
2915 3158 3.799281 ATTTGCAACCGGGTATTCATG 57.201 42.857 6.32 0.00 0.00 3.07
2916 3159 3.132111 GGAATTTGCAACCGGGTATTCAT 59.868 43.478 17.14 0.00 0.00 2.57
2917 3160 2.494073 GGAATTTGCAACCGGGTATTCA 59.506 45.455 17.14 6.83 0.00 2.57
2918 3161 2.758423 AGGAATTTGCAACCGGGTATTC 59.242 45.455 6.32 5.15 0.00 1.75
2919 3162 2.815158 AGGAATTTGCAACCGGGTATT 58.185 42.857 6.32 0.00 0.00 1.89
2920 3163 2.525105 AGGAATTTGCAACCGGGTAT 57.475 45.000 6.32 0.00 0.00 2.73
2921 3164 2.572556 TCTAGGAATTTGCAACCGGGTA 59.427 45.455 6.32 0.00 0.00 3.69
2922 3165 1.353022 TCTAGGAATTTGCAACCGGGT 59.647 47.619 6.32 0.00 0.00 5.28
2923 3166 2.017049 CTCTAGGAATTTGCAACCGGG 58.983 52.381 6.32 0.00 0.00 5.73
2924 3167 1.401905 GCTCTAGGAATTTGCAACCGG 59.598 52.381 0.00 0.00 0.00 5.28
2925 3168 1.401905 GGCTCTAGGAATTTGCAACCG 59.598 52.381 0.00 0.00 0.00 4.44
2926 3169 1.401905 CGGCTCTAGGAATTTGCAACC 59.598 52.381 0.00 0.00 0.00 3.77
2927 3170 1.202188 GCGGCTCTAGGAATTTGCAAC 60.202 52.381 0.00 0.00 0.00 4.17
2928 3171 1.094785 GCGGCTCTAGGAATTTGCAA 58.905 50.000 0.00 0.00 0.00 4.08
2929 3172 0.748005 GGCGGCTCTAGGAATTTGCA 60.748 55.000 0.00 0.00 0.00 4.08
2930 3173 0.748005 TGGCGGCTCTAGGAATTTGC 60.748 55.000 11.43 0.00 0.00 3.68
2931 3174 1.972872 ATGGCGGCTCTAGGAATTTG 58.027 50.000 11.43 0.00 0.00 2.32
2932 3175 2.301346 CAATGGCGGCTCTAGGAATTT 58.699 47.619 11.43 0.00 0.00 1.82
2933 3176 1.477558 CCAATGGCGGCTCTAGGAATT 60.478 52.381 11.43 0.00 0.00 2.17
2934 3177 0.109342 CCAATGGCGGCTCTAGGAAT 59.891 55.000 11.43 0.00 0.00 3.01
2935 3178 1.271840 ACCAATGGCGGCTCTAGGAA 61.272 55.000 11.43 0.00 0.00 3.36
2936 3179 1.271840 AACCAATGGCGGCTCTAGGA 61.272 55.000 11.43 0.00 0.00 2.94
2937 3180 0.815615 GAACCAATGGCGGCTCTAGG 60.816 60.000 11.43 9.54 0.00 3.02
2938 3181 0.815615 GGAACCAATGGCGGCTCTAG 60.816 60.000 11.43 0.00 0.00 2.43
2939 3182 1.223487 GGAACCAATGGCGGCTCTA 59.777 57.895 11.43 0.00 0.00 2.43
2940 3183 1.271840 TAGGAACCAATGGCGGCTCT 61.272 55.000 11.43 0.00 0.00 4.09
2941 3184 0.179018 ATAGGAACCAATGGCGGCTC 60.179 55.000 11.43 0.00 0.00 4.70
2942 3185 1.136828 TATAGGAACCAATGGCGGCT 58.863 50.000 11.43 0.00 0.00 5.52
2943 3186 2.200373 ATATAGGAACCAATGGCGGC 57.800 50.000 0.00 0.00 0.00 6.53
2944 3187 6.834168 AATAAATATAGGAACCAATGGCGG 57.166 37.500 0.00 0.00 0.00 6.13
2945 3188 7.881142 TGAAATAAATATAGGAACCAATGGCG 58.119 34.615 0.00 0.00 0.00 5.69
2946 3189 9.643693 CATGAAATAAATATAGGAACCAATGGC 57.356 33.333 0.00 0.00 0.00 4.40
2955 3198 8.956426 GCCGGAAATCATGAAATAAATATAGGA 58.044 33.333 5.05 0.00 0.00 2.94
2956 3199 7.910162 CGCCGGAAATCATGAAATAAATATAGG 59.090 37.037 5.05 0.00 0.00 2.57
2957 3200 8.664798 TCGCCGGAAATCATGAAATAAATATAG 58.335 33.333 5.05 0.00 0.00 1.31
2958 3201 8.554835 TCGCCGGAAATCATGAAATAAATATA 57.445 30.769 5.05 0.00 0.00 0.86
2959 3202 7.447374 TCGCCGGAAATCATGAAATAAATAT 57.553 32.000 5.05 0.00 0.00 1.28
2986 3229 1.612146 TCTCCTCCCACGGAATGCA 60.612 57.895 0.00 0.00 31.44 3.96
2987 3230 1.153349 GTCTCCTCCCACGGAATGC 60.153 63.158 0.00 0.00 31.44 3.56
3024 3284 8.418597 AGCCAGCATATCATCTTGAAATTTAT 57.581 30.769 0.00 0.00 0.00 1.40
3060 3320 3.054361 CACTTTACCCCTATGAGCACCTT 60.054 47.826 0.00 0.00 0.00 3.50
3073 3333 2.612212 CGCATACATGGACACTTTACCC 59.388 50.000 0.00 0.00 0.00 3.69
3079 3339 6.156748 TCTATAAACGCATACATGGACACT 57.843 37.500 0.00 0.00 0.00 3.55
3084 3344 6.701841 ACTCACTTCTATAAACGCATACATGG 59.298 38.462 0.00 0.00 0.00 3.66
3090 3350 8.410912 TGTATACACTCACTTCTATAAACGCAT 58.589 33.333 0.08 0.00 0.00 4.73
3103 3363 8.300286 GCTCATATACATGTGTATACACTCACT 58.700 37.037 30.69 16.76 43.74 3.41
3108 3368 7.869016 AACGCTCATATACATGTGTATACAC 57.131 36.000 25.99 25.99 43.74 2.90
3118 3378 3.490896 CAGACGCAAACGCTCATATACAT 59.509 43.478 0.00 0.00 45.53 2.29
3231 3494 3.572255 ACAAGTTGCCATGATAACCGTTT 59.428 39.130 1.81 0.00 0.00 3.60
3282 3545 7.315142 TGAACTAAGATGAATTTGCCATGTTC 58.685 34.615 0.00 0.00 31.30 3.18
3313 3576 5.904941 TGTAAGCATGGCAATTTCCTTATG 58.095 37.500 0.00 0.00 0.00 1.90
3403 3666 5.064325 GTGTAACCAATCCAACGTTAGATCC 59.936 44.000 9.68 0.00 0.00 3.36
3409 3672 3.974871 GTGTGTAACCAATCCAACGTT 57.025 42.857 0.00 0.00 34.36 3.99
3513 3776 1.066858 CCATGTGCACGGACTAGTCTT 60.067 52.381 21.88 7.24 0.00 3.01
3518 3781 0.461870 GCATCCATGTGCACGGACTA 60.462 55.000 14.78 0.00 44.43 2.59
3531 3794 2.745884 CGGCGGTTTCTGCATCCA 60.746 61.111 0.00 0.00 0.00 3.41
3538 3801 1.301479 GTCTTGGACGGCGGTTTCT 60.301 57.895 13.24 0.00 0.00 2.52
3542 3805 4.681978 GCAGTCTTGGACGGCGGT 62.682 66.667 13.24 0.00 42.77 5.68
3596 3859 3.118445 TCCGCTGTGTTTGATGATATCCA 60.118 43.478 0.00 0.00 0.00 3.41
3601 3864 3.758023 TGAAATCCGCTGTGTTTGATGAT 59.242 39.130 0.00 0.00 0.00 2.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.