Multiple sequence alignment - TraesCS7A01G496000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G496000 chr7A 100.000 4115 0 0 1 4115 686112140 686108026 0.000000e+00 7600
1 TraesCS7A01G496000 chr7A 94.624 93 5 0 1790 1882 138960740 138960832 1.190000e-30 145
2 TraesCS7A01G496000 chr7A 93.750 96 6 0 1789 1884 213151353 213151258 1.190000e-30 145
3 TraesCS7A01G496000 chr7D 85.660 1827 155 50 1 1797 593274440 593272691 0.000000e+00 1823
4 TraesCS7A01G496000 chr7D 92.274 1126 62 9 2822 3928 593271814 593270695 0.000000e+00 1574
5 TraesCS7A01G496000 chr7D 91.694 927 48 14 1872 2796 593272699 593271800 0.000000e+00 1258
6 TraesCS7A01G496000 chr7D 90.441 136 11 1 3982 4115 593270585 593270450 1.180000e-40 178
7 TraesCS7A01G496000 chr7D 94.624 93 5 0 1793 1885 599718525 599718433 1.190000e-30 145
8 TraesCS7A01G496000 chr7B 93.340 1081 65 4 2873 3950 667629751 667630827 0.000000e+00 1591
9 TraesCS7A01G496000 chr7B 96.120 902 32 3 1872 2771 667628831 667629731 0.000000e+00 1469
10 TraesCS7A01G496000 chr7B 83.051 1121 83 50 713 1794 667627784 667628836 0.000000e+00 918
11 TraesCS7A01G496000 chr7B 81.414 608 81 15 122 701 667627126 667627729 6.230000e-128 468
12 TraesCS7A01G496000 chr7B 91.129 124 8 2 3995 4115 667630932 667631055 9.150000e-37 165
13 TraesCS7A01G496000 chr7B 94.949 99 4 1 1783 1881 8925276 8925179 1.980000e-33 154
14 TraesCS7A01G496000 chr7B 91.667 84 7 0 53 136 667627018 667627101 2.600000e-22 117
15 TraesCS7A01G496000 chr3D 95.556 90 4 0 1790 1879 71371433 71371522 1.190000e-30 145
16 TraesCS7A01G496000 chr6B 93.750 96 5 1 1789 1884 320551121 320551027 4.290000e-30 143
17 TraesCS7A01G496000 chr1B 93.684 95 6 0 1793 1887 234252674 234252580 4.290000e-30 143
18 TraesCS7A01G496000 chrUn 93.617 94 6 0 1785 1878 22143251 22143158 1.540000e-29 141
19 TraesCS7A01G496000 chr6A 88.991 109 10 2 1773 1880 614304773 614304666 2.580000e-27 134


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G496000 chr7A 686108026 686112140 4114 True 7600.00 7600 100.00000 1 4115 1 chr7A.!!$R2 4114
1 TraesCS7A01G496000 chr7D 593270450 593274440 3990 True 1208.25 1823 90.01725 1 4115 4 chr7D.!!$R2 4114
2 TraesCS7A01G496000 chr7B 667627018 667631055 4037 False 788.00 1591 89.45350 53 4115 6 chr7B.!!$F1 4062


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
169 209 0.749818 TGGTGCAAACGAAGGCTTGA 60.750 50.000 3.46 0.0 0.00 3.02 F
1312 1466 0.397564 TGTGAGCCAGTGATGCTTCA 59.602 50.000 0.00 0.0 39.69 3.02 F
1313 1467 1.003928 TGTGAGCCAGTGATGCTTCAT 59.996 47.619 5.49 0.0 39.69 2.57 F
2584 2771 0.238289 GTTCACATTGTCCGTGGCTG 59.762 55.000 0.00 0.0 35.03 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1591 1772 0.106719 TACCCCAGCCTAATTGCAGC 60.107 55.000 0.0 0.0 0.00 5.25 R
2367 2552 0.178967 TGCCCCATTTCAGCTTGACA 60.179 50.000 0.0 0.0 0.00 3.58 R
3081 3284 0.895530 GAATGTCCGTGTCCTCCTCA 59.104 55.000 0.0 0.0 0.00 3.86 R
3784 3988 1.131126 CATGGTCAGCAATTCCACGAC 59.869 52.381 0.0 0.0 33.91 4.34 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 9.056005 TCTAAAGGATAACATTACATGTCATGC 57.944 33.333 17.93 3.90 44.07 4.06
39 40 6.639632 AAGGATAACATTACATGTCATGCC 57.360 37.500 17.93 11.69 44.07 4.40
40 41 5.945310 AGGATAACATTACATGTCATGCCT 58.055 37.500 17.93 13.46 44.07 4.75
41 42 6.000219 AGGATAACATTACATGTCATGCCTC 59.000 40.000 17.93 12.19 44.07 4.70
42 43 5.106948 GGATAACATTACATGTCATGCCTCG 60.107 44.000 17.93 2.44 44.07 4.63
43 44 3.266510 ACATTACATGTCATGCCTCGT 57.733 42.857 17.93 3.05 39.92 4.18
44 45 3.198068 ACATTACATGTCATGCCTCGTC 58.802 45.455 17.93 0.00 39.92 4.20
45 46 3.197265 CATTACATGTCATGCCTCGTCA 58.803 45.455 12.91 0.00 0.00 4.35
46 47 3.326836 TTACATGTCATGCCTCGTCAA 57.673 42.857 12.91 0.00 0.00 3.18
117 118 3.393278 TGTTAAGTTGTACCTCCAAGCCT 59.607 43.478 0.00 0.00 0.00 4.58
128 129 2.572104 CCTCCAAGCCTAGTAACCAAGT 59.428 50.000 0.00 0.00 0.00 3.16
136 176 2.481449 CCTAGTAACCAAGTGCCTAGCG 60.481 54.545 0.00 0.00 0.00 4.26
169 209 0.749818 TGGTGCAAACGAAGGCTTGA 60.750 50.000 3.46 0.00 0.00 3.02
179 219 6.541969 CAAACGAAGGCTTGAAAACATTTTT 58.458 32.000 3.46 0.00 0.00 1.94
227 287 2.262637 ACCCACGGACCAGAGATAAAA 58.737 47.619 0.00 0.00 0.00 1.52
328 388 5.529289 AGACTGGATCCATTCAAGTAGGTA 58.471 41.667 28.23 0.00 38.84 3.08
357 417 7.193595 GCTTAAGAGTTTTTGTAAGCTCACAA 58.806 34.615 6.67 0.00 43.24 3.33
387 447 9.535878 TTTCTTGTGTTTGGGTAAAATACATTC 57.464 29.630 1.98 0.00 45.69 2.67
516 593 9.912634 TTTCCTTGAAACACATGAATATTTCTC 57.087 29.630 0.00 0.00 33.21 2.87
785 918 4.202567 ACCAAGAGCCTCCAATTTCTGTTA 60.203 41.667 0.00 0.00 0.00 2.41
790 923 7.200434 AGAGCCTCCAATTTCTGTTATCTAA 57.800 36.000 0.00 0.00 0.00 2.10
792 925 8.109634 AGAGCCTCCAATTTCTGTTATCTAAAA 58.890 33.333 0.00 0.00 0.00 1.52
793 926 8.286191 AGCCTCCAATTTCTGTTATCTAAAAG 57.714 34.615 0.00 0.00 0.00 2.27
795 928 8.523658 GCCTCCAATTTCTGTTATCTAAAAGTT 58.476 33.333 0.00 0.00 0.00 2.66
799 932 9.846248 CCAATTTCTGTTATCTAAAAGTTCTGG 57.154 33.333 0.00 0.00 0.00 3.86
800 933 9.346725 CAATTTCTGTTATCTAAAAGTTCTGGC 57.653 33.333 0.00 0.00 0.00 4.85
801 934 7.448748 TTTCTGTTATCTAAAAGTTCTGGCC 57.551 36.000 0.00 0.00 0.00 5.36
895 1030 2.105128 CCCTAGTCTCGCTTGCGG 59.895 66.667 15.10 6.20 0.00 5.69
896 1031 2.711922 CCCTAGTCTCGCTTGCGGT 61.712 63.158 15.10 0.91 0.00 5.68
906 1041 2.032071 CTTGCGGTTCGAACCCCT 59.968 61.111 35.50 0.00 46.53 4.79
930 1065 1.457455 CAGCCTCTCCTCCTCCTCC 60.457 68.421 0.00 0.00 0.00 4.30
1093 1231 2.494073 CAGATAGATAGGCGGAGAACCC 59.506 54.545 0.00 0.00 0.00 4.11
1094 1232 2.380590 AGATAGATAGGCGGAGAACCCT 59.619 50.000 0.00 0.00 35.22 4.34
1095 1233 3.592427 AGATAGATAGGCGGAGAACCCTA 59.408 47.826 0.00 0.00 38.04 3.53
1096 1234 2.296073 AGATAGGCGGAGAACCCTAG 57.704 55.000 0.00 0.00 37.15 3.02
1141 1279 2.112297 TCCTGCGGCGGACTTTTT 59.888 55.556 11.13 0.00 0.00 1.94
1161 1299 6.892658 TTTTGCTAGTATTGGTTGTGTGAT 57.107 33.333 0.00 0.00 0.00 3.06
1178 1326 1.049402 GATGGGTCCAGTAGGTAGGC 58.951 60.000 0.00 0.00 35.89 3.93
1182 1330 0.974525 GGTCCAGTAGGTAGGCCGTT 60.975 60.000 0.00 0.00 40.50 4.44
1188 1336 2.431057 CAGTAGGTAGGCCGTTGATTCT 59.569 50.000 0.00 0.00 40.50 2.40
1191 1339 1.906574 AGGTAGGCCGTTGATTCTTGA 59.093 47.619 0.00 0.00 40.50 3.02
1275 1429 1.208165 CCAGCCAGTAACCCCTTCCT 61.208 60.000 0.00 0.00 0.00 3.36
1283 1437 4.223953 CAGTAACCCCTTCCTATCTGCTA 58.776 47.826 0.00 0.00 0.00 3.49
1299 1453 4.697514 TCTGCTATTATTCTGGTGTGAGC 58.302 43.478 0.00 0.00 0.00 4.26
1308 1462 1.302752 TGGTGTGAGCCAGTGATGC 60.303 57.895 0.00 0.00 33.97 3.91
1309 1463 1.002868 GGTGTGAGCCAGTGATGCT 60.003 57.895 0.00 0.00 43.03 3.79
1310 1464 0.607489 GGTGTGAGCCAGTGATGCTT 60.607 55.000 0.00 0.00 39.69 3.91
1311 1465 0.801251 GTGTGAGCCAGTGATGCTTC 59.199 55.000 0.00 0.00 39.69 3.86
1312 1466 0.397564 TGTGAGCCAGTGATGCTTCA 59.602 50.000 0.00 0.00 39.69 3.02
1313 1467 1.003928 TGTGAGCCAGTGATGCTTCAT 59.996 47.619 5.49 0.00 39.69 2.57
1324 1478 3.656457 TGCTTCATCTGCATGGTGT 57.344 47.368 0.00 0.00 35.31 4.16
1347 1501 4.347453 CTGCAAACGTGGCCTGCC 62.347 66.667 11.08 0.00 35.13 4.85
1351 1505 4.572571 AAACGTGGCCTGCCCGAA 62.573 61.111 20.69 0.00 35.87 4.30
1382 1536 1.811266 CTGCCGTCGAGATTGTGGG 60.811 63.158 0.00 0.00 0.00 4.61
1387 1541 1.068474 CGTCGAGATTGTGGGTTGTC 58.932 55.000 0.00 0.00 0.00 3.18
1419 1573 5.513849 GTCTGTCCGTTTTTGTTAGGTTTTG 59.486 40.000 0.00 0.00 0.00 2.44
1425 1579 4.259490 CGTTTTTGTTAGGTTTTGGCGAAC 60.259 41.667 0.00 0.00 0.00 3.95
1464 1621 3.181465 GCTAGATGGGTCGAGATTTTGGA 60.181 47.826 0.00 0.00 29.49 3.53
1475 1632 5.980715 GTCGAGATTTTGGATCTAGAAGGTC 59.019 44.000 0.00 0.00 32.93 3.85
1490 1647 2.158959 GGTCGCGACATCGTCAAGG 61.159 63.158 37.26 0.00 42.22 3.61
1522 1703 1.340889 GTTGCCAATGTCTCCTGCAAA 59.659 47.619 0.00 0.00 42.86 3.68
1558 1739 5.416083 TGGATTTGTCGTATCACTAGTTGG 58.584 41.667 0.00 0.00 0.00 3.77
1603 1784 1.354506 CAGAGCGCTGCAATTAGGC 59.645 57.895 18.48 0.00 34.95 3.93
1682 1865 3.426695 GGTCACAGCACAGAATTGTATGC 60.427 47.826 0.00 0.00 35.25 3.14
1686 1869 2.009774 AGCACAGAATTGTATGCGTCC 58.990 47.619 0.00 0.00 35.25 4.79
1765 1948 4.098196 CCTAGTGTTGTCTTACCTCTAGCC 59.902 50.000 0.00 0.00 0.00 3.93
1792 1975 4.040952 ACTTGTGGTAGCTGATTCAGAACT 59.959 41.667 17.87 8.26 32.44 3.01
1793 1976 5.246203 ACTTGTGGTAGCTGATTCAGAACTA 59.754 40.000 17.87 9.28 32.44 2.24
1794 1977 5.073311 TGTGGTAGCTGATTCAGAACTAC 57.927 43.478 17.87 19.17 34.03 2.73
1795 1978 4.772624 TGTGGTAGCTGATTCAGAACTACT 59.227 41.667 23.68 13.29 34.30 2.57
1796 1979 5.246203 TGTGGTAGCTGATTCAGAACTACTT 59.754 40.000 23.68 5.68 34.30 2.24
1797 1980 5.808030 GTGGTAGCTGATTCAGAACTACTTC 59.192 44.000 17.87 11.82 32.01 3.01
1798 1981 5.105310 TGGTAGCTGATTCAGAACTACTTCC 60.105 44.000 17.87 11.24 32.01 3.46
1799 1982 5.128008 GGTAGCTGATTCAGAACTACTTCCT 59.872 44.000 17.87 4.19 32.01 3.36
1800 1983 5.337578 AGCTGATTCAGAACTACTTCCTC 57.662 43.478 17.87 0.00 32.44 3.71
1801 1984 4.161377 AGCTGATTCAGAACTACTTCCTCC 59.839 45.833 17.87 0.00 32.44 4.30
1802 1985 4.677584 CTGATTCAGAACTACTTCCTCCG 58.322 47.826 8.00 0.00 32.44 4.63
1803 1986 4.087182 TGATTCAGAACTACTTCCTCCGT 58.913 43.478 0.00 0.00 0.00 4.69
1804 1987 5.258841 TGATTCAGAACTACTTCCTCCGTA 58.741 41.667 0.00 0.00 0.00 4.02
1805 1988 5.713389 TGATTCAGAACTACTTCCTCCGTAA 59.287 40.000 0.00 0.00 0.00 3.18
1806 1989 6.209986 TGATTCAGAACTACTTCCTCCGTAAA 59.790 38.462 0.00 0.00 0.00 2.01
1807 1990 5.382618 TCAGAACTACTTCCTCCGTAAAC 57.617 43.478 0.00 0.00 0.00 2.01
1808 1991 5.075493 TCAGAACTACTTCCTCCGTAAACT 58.925 41.667 0.00 0.00 0.00 2.66
1809 1992 6.240894 TCAGAACTACTTCCTCCGTAAACTA 58.759 40.000 0.00 0.00 0.00 2.24
1810 1993 6.716628 TCAGAACTACTTCCTCCGTAAACTAA 59.283 38.462 0.00 0.00 0.00 2.24
1811 1994 7.395489 TCAGAACTACTTCCTCCGTAAACTAAT 59.605 37.037 0.00 0.00 0.00 1.73
1812 1995 8.680903 CAGAACTACTTCCTCCGTAAACTAATA 58.319 37.037 0.00 0.00 0.00 0.98
1813 1996 9.418839 AGAACTACTTCCTCCGTAAACTAATAT 57.581 33.333 0.00 0.00 0.00 1.28
1819 2002 9.418839 ACTTCCTCCGTAAACTAATATAAGAGT 57.581 33.333 0.00 0.00 0.00 3.24
1820 2003 9.680315 CTTCCTCCGTAAACTAATATAAGAGTG 57.320 37.037 0.00 0.00 0.00 3.51
1821 2004 8.757982 TCCTCCGTAAACTAATATAAGAGTGT 57.242 34.615 0.00 0.00 0.00 3.55
1822 2005 9.193806 TCCTCCGTAAACTAATATAAGAGTGTT 57.806 33.333 0.00 0.00 0.00 3.32
1823 2006 9.813446 CCTCCGTAAACTAATATAAGAGTGTTT 57.187 33.333 0.00 0.00 0.00 2.83
1891 2074 8.091449 ACAGAGGAAGTAGTTTTCATGAGTAAG 58.909 37.037 0.00 0.00 0.00 2.34
1914 2097 7.121974 AGTATGAATCGAGGATTATTTTGCG 57.878 36.000 0.00 0.00 31.89 4.85
1916 2099 4.447290 TGAATCGAGGATTATTTTGCGGA 58.553 39.130 0.00 0.00 31.89 5.54
1957 2140 6.035327 GCTGTATTTGAATTGGTCTGAATTGC 59.965 38.462 0.00 0.00 0.00 3.56
2003 2187 6.928520 TCCTGTTAAGGTTACTACTTAGTGC 58.071 40.000 0.00 0.00 44.82 4.40
2005 2189 6.812160 CCTGTTAAGGTTACTACTTAGTGCTG 59.188 42.308 0.00 0.00 38.96 4.41
2205 2390 7.480760 AATTGCCCTAACTGTATTGAACATT 57.519 32.000 0.00 0.00 37.50 2.71
2367 2552 5.520748 ACTTAACAGGGAAGATGGTCATT 57.479 39.130 0.00 0.00 0.00 2.57
2475 2662 6.875726 TCCTTTACAGATGTCTCATTCTTGTG 59.124 38.462 0.00 0.00 0.00 3.33
2577 2764 3.568007 TGCAGGTAAAGTTCACATTGTCC 59.432 43.478 0.00 0.00 0.00 4.02
2584 2771 0.238289 GTTCACATTGTCCGTGGCTG 59.762 55.000 0.00 0.00 35.03 4.85
2595 2782 1.510844 CGTGGCTGCCCATTTTACC 59.489 57.895 17.53 0.00 44.51 2.85
2606 2793 3.825328 CCCATTTTACCTGATGGAGGAG 58.175 50.000 4.02 0.00 46.33 3.69
2656 2843 7.132213 CCACACTATTTTGTTACTCACACTTG 58.868 38.462 0.00 0.00 33.98 3.16
2661 2848 8.120465 ACTATTTTGTTACTCACACTTGAAACG 58.880 33.333 0.00 0.00 33.98 3.60
2681 2868 2.351726 CGAATTGCAGCTAAGTGGTACC 59.648 50.000 4.43 4.43 0.00 3.34
2927 3129 4.130857 CTCCTATAGCTCGACAAGTCAGA 58.869 47.826 0.00 0.00 0.00 3.27
2961 3163 3.990959 TGTGGCAGTGTCATATGGTTA 57.009 42.857 0.00 0.00 0.00 2.85
2967 3169 5.365314 TGGCAGTGTCATATGGTTACTGATA 59.635 40.000 25.47 16.07 40.80 2.15
3010 3212 2.877786 CACATATGCGAGTTAATGGCCA 59.122 45.455 8.56 8.56 0.00 5.36
3036 3239 4.142403 TGCCATAACTATCTGTTTTGCTGC 60.142 41.667 0.00 0.00 39.89 5.25
3038 3241 5.393461 GCCATAACTATCTGTTTTGCTGCTT 60.393 40.000 0.00 0.00 39.89 3.91
3041 3244 4.756084 ACTATCTGTTTTGCTGCTTGTC 57.244 40.909 0.00 0.00 0.00 3.18
3042 3245 2.693797 ATCTGTTTTGCTGCTTGTCG 57.306 45.000 0.00 0.00 0.00 4.35
3129 3332 1.612726 GCCTGAAGAGCACATGGACTT 60.613 52.381 0.00 0.00 0.00 3.01
3257 3461 5.423015 TCTAGTTCTGCATCCTGAATGAAC 58.577 41.667 3.68 3.68 37.59 3.18
3263 3467 2.097954 TGCATCCTGAATGAACGAATGC 59.902 45.455 0.00 0.00 37.59 3.56
3287 3491 1.139163 CTTGCATGTTTGAAACGGCC 58.861 50.000 17.78 0.00 34.57 6.13
3288 3492 0.461548 TTGCATGTTTGAAACGGCCA 59.538 45.000 17.78 7.80 34.57 5.36
3307 3511 3.639538 CCAATTGCTGATTGCTGATAGC 58.360 45.455 0.00 0.00 43.11 2.97
3366 3570 7.188834 TGTCTGAATTGCAATGATCGTATTTC 58.811 34.615 13.82 4.72 0.00 2.17
3544 3748 3.303593 CGTTCATAGGTTGATGCATGCTC 60.304 47.826 20.33 13.98 33.34 4.26
3660 3864 4.867047 GCATATCACCGTATCCTGAATGAG 59.133 45.833 0.00 0.00 0.00 2.90
3743 3947 5.807011 GGCTGTTGGATATGTTTTGATGTTC 59.193 40.000 0.00 0.00 0.00 3.18
3749 3953 9.781834 GTTGGATATGTTTTGATGTTCGAAATA 57.218 29.630 0.00 0.00 32.83 1.40
3780 3984 7.148656 GGTTGTATTTGCGCAATTTGAACTATT 60.149 33.333 25.64 0.00 0.00 1.73
3784 3988 9.833894 GTATTTGCGCAATTTGAACTATTTATG 57.166 29.630 25.64 0.00 0.00 1.90
3842 4046 4.024641 TGTTGCATGATCGAAGACATATGC 60.025 41.667 1.58 0.00 44.84 3.14
3848 4053 5.205759 TGATCGAAGACATATGCAGTGAT 57.794 39.130 1.58 0.35 42.51 3.06
3928 4139 2.229784 GCATTGAACTAGCAAGCCAAGT 59.770 45.455 0.00 0.00 0.00 3.16
3929 4140 3.305608 GCATTGAACTAGCAAGCCAAGTT 60.306 43.478 9.37 9.37 36.20 2.66
3930 4141 4.797275 GCATTGAACTAGCAAGCCAAGTTT 60.797 41.667 10.53 0.00 33.72 2.66
3931 4142 3.988379 TGAACTAGCAAGCCAAGTTTG 57.012 42.857 10.53 0.00 33.72 2.93
3932 4143 3.287222 TGAACTAGCAAGCCAAGTTTGT 58.713 40.909 10.53 0.00 33.72 2.83
3933 4144 3.066621 TGAACTAGCAAGCCAAGTTTGTG 59.933 43.478 10.53 0.00 33.72 3.33
3950 4161 5.416952 AGTTTGTGGATCAGACCATTGATTC 59.583 40.000 0.00 0.00 42.17 2.52
3952 4163 5.955961 TGTGGATCAGACCATTGATTCTA 57.044 39.130 0.00 0.00 42.17 2.10
3953 4164 6.312141 TGTGGATCAGACCATTGATTCTAA 57.688 37.500 0.00 0.00 42.17 2.10
3955 4166 6.825213 TGTGGATCAGACCATTGATTCTAAAG 59.175 38.462 0.00 0.00 42.17 1.85
3956 4167 6.825721 GTGGATCAGACCATTGATTCTAAAGT 59.174 38.462 0.00 0.00 42.17 2.66
3957 4168 6.825213 TGGATCAGACCATTGATTCTAAAGTG 59.175 38.462 0.00 0.00 37.90 3.16
3971 4210 7.334421 TGATTCTAAAGTGTAAGTTCAGGCATC 59.666 37.037 0.00 0.00 0.00 3.91
3972 4211 5.168569 TCTAAAGTGTAAGTTCAGGCATCG 58.831 41.667 0.00 0.00 0.00 3.84
3973 4212 3.402628 AAGTGTAAGTTCAGGCATCGT 57.597 42.857 0.00 0.00 0.00 3.73
3974 4213 3.402628 AGTGTAAGTTCAGGCATCGTT 57.597 42.857 0.00 0.00 0.00 3.85
3976 4215 2.092211 GTGTAAGTTCAGGCATCGTTCG 59.908 50.000 0.00 0.00 0.00 3.95
3977 4216 1.659098 GTAAGTTCAGGCATCGTTCGG 59.341 52.381 0.00 0.00 0.00 4.30
3978 4217 0.034896 AAGTTCAGGCATCGTTCGGT 59.965 50.000 0.00 0.00 0.00 4.69
3980 4219 0.872388 GTTCAGGCATCGTTCGGTTT 59.128 50.000 0.00 0.00 0.00 3.27
3984 4257 2.167693 TCAGGCATCGTTCGGTTTCTAT 59.832 45.455 0.00 0.00 0.00 1.98
4035 4311 7.214467 TCCGAGATAAAGAAAAACAAGCAAT 57.786 32.000 0.00 0.00 0.00 3.56
4046 4322 8.842358 AGAAAAACAAGCAATGAATCATGAAT 57.158 26.923 0.00 0.00 0.00 2.57
4098 4374 3.131755 TGCCATGTTGAATGTTGACACAA 59.868 39.130 0.00 0.00 36.16 3.33
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 1.259770 CGATTGACGAGGCATGACATG 59.740 52.381 11.27 11.27 45.77 3.21
30 31 1.134699 ACGATTGACGAGGCATGACAT 60.135 47.619 0.00 0.00 45.77 3.06
32 33 0.924090 GACGATTGACGAGGCATGAC 59.076 55.000 0.00 0.00 45.77 3.06
33 34 0.530288 TGACGATTGACGAGGCATGA 59.470 50.000 0.00 0.00 45.77 3.07
34 35 1.524355 GATGACGATTGACGAGGCATG 59.476 52.381 0.00 0.00 45.77 4.06
35 36 1.410517 AGATGACGATTGACGAGGCAT 59.589 47.619 0.00 0.00 45.77 4.40
36 37 0.817654 AGATGACGATTGACGAGGCA 59.182 50.000 0.00 0.00 45.77 4.75
37 38 1.927895 AAGATGACGATTGACGAGGC 58.072 50.000 0.00 0.00 45.77 4.70
38 39 2.029728 GCAAAGATGACGATTGACGAGG 59.970 50.000 0.00 0.00 45.77 4.63
39 40 2.926200 AGCAAAGATGACGATTGACGAG 59.074 45.455 0.00 0.00 45.77 4.18
40 41 2.959516 AGCAAAGATGACGATTGACGA 58.040 42.857 0.00 0.00 45.77 4.20
42 43 4.433615 TCCTAGCAAAGATGACGATTGAC 58.566 43.478 0.00 0.00 0.00 3.18
43 44 4.402474 TCTCCTAGCAAAGATGACGATTGA 59.598 41.667 0.00 0.00 0.00 2.57
44 45 4.686972 TCTCCTAGCAAAGATGACGATTG 58.313 43.478 0.00 0.00 0.00 2.67
45 46 5.543507 ATCTCCTAGCAAAGATGACGATT 57.456 39.130 0.00 0.00 31.09 3.34
46 47 5.163364 ACAATCTCCTAGCAAAGATGACGAT 60.163 40.000 0.00 0.00 32.62 3.73
117 118 2.449464 TCGCTAGGCACTTGGTTACTA 58.551 47.619 0.00 0.00 41.75 1.82
128 129 0.323302 TTGTCACCATTCGCTAGGCA 59.677 50.000 0.00 0.00 0.00 4.75
136 176 3.383620 TGCACCATTTTGTCACCATTC 57.616 42.857 0.00 0.00 0.00 2.67
179 219 8.625651 TGTAGATCGTTTCAATTCCAAAAGAAA 58.374 29.630 0.00 0.00 38.21 2.52
180 220 8.160521 TGTAGATCGTTTCAATTCCAAAAGAA 57.839 30.769 0.92 0.00 39.32 2.52
181 221 7.737972 TGTAGATCGTTTCAATTCCAAAAGA 57.262 32.000 0.00 0.00 0.00 2.52
182 222 9.490663 GTATGTAGATCGTTTCAATTCCAAAAG 57.509 33.333 0.00 0.00 0.00 2.27
188 233 6.292168 CGTGGGTATGTAGATCGTTTCAATTC 60.292 42.308 0.00 0.00 0.00 2.17
227 287 7.738437 AAATTCCATTCTCAAATACACCCAT 57.262 32.000 0.00 0.00 0.00 4.00
328 388 5.828328 AGCTTACAAAAACTCTTAAGCCACT 59.172 36.000 8.25 0.00 45.01 4.00
387 447 8.592105 ATGGGCATTCGTTTTATGAAAATATG 57.408 30.769 0.00 0.00 32.22 1.78
557 634 8.759641 TCAAAATAAAATTTCATTCCACACACG 58.240 29.630 0.00 0.00 0.00 4.49
696 828 8.795842 AGGTTGTGTGATATACCGATTAAAAA 57.204 30.769 0.00 0.00 35.80 1.94
697 829 8.795842 AAGGTTGTGTGATATACCGATTAAAA 57.204 30.769 0.00 0.00 35.80 1.52
698 830 8.795842 AAAGGTTGTGTGATATACCGATTAAA 57.204 30.769 0.00 0.00 35.80 1.52
699 831 7.496591 GGAAAGGTTGTGTGATATACCGATTAA 59.503 37.037 0.00 0.00 35.80 1.40
700 832 6.987992 GGAAAGGTTGTGTGATATACCGATTA 59.012 38.462 0.00 0.00 35.80 1.75
701 833 5.820947 GGAAAGGTTGTGTGATATACCGATT 59.179 40.000 0.00 0.00 35.80 3.34
702 834 5.365619 GGAAAGGTTGTGTGATATACCGAT 58.634 41.667 0.00 0.00 35.80 4.18
703 835 4.678574 CGGAAAGGTTGTGTGATATACCGA 60.679 45.833 0.00 0.00 38.09 4.69
704 836 3.554324 CGGAAAGGTTGTGTGATATACCG 59.446 47.826 0.00 0.00 35.80 4.02
705 837 4.510571 ACGGAAAGGTTGTGTGATATACC 58.489 43.478 0.00 0.00 0.00 2.73
706 838 6.101332 TGTACGGAAAGGTTGTGTGATATAC 58.899 40.000 0.00 0.00 0.00 1.47
707 839 6.283544 TGTACGGAAAGGTTGTGTGATATA 57.716 37.500 0.00 0.00 0.00 0.86
708 840 5.155278 TGTACGGAAAGGTTGTGTGATAT 57.845 39.130 0.00 0.00 0.00 1.63
709 841 4.603989 TGTACGGAAAGGTTGTGTGATA 57.396 40.909 0.00 0.00 0.00 2.15
710 842 3.478857 TGTACGGAAAGGTTGTGTGAT 57.521 42.857 0.00 0.00 0.00 3.06
711 843 2.983907 TGTACGGAAAGGTTGTGTGA 57.016 45.000 0.00 0.00 0.00 3.58
717 849 2.172851 TTCGCATGTACGGAAAGGTT 57.827 45.000 0.00 0.00 0.00 3.50
785 918 4.568592 CCCAGAAGGCCAGAACTTTTAGAT 60.569 45.833 5.01 0.00 0.00 1.98
790 923 3.753787 CCCAGAAGGCCAGAACTTT 57.246 52.632 5.01 0.00 0.00 2.66
800 933 0.323629 TCGGTTACAAGCCCAGAAGG 59.676 55.000 0.00 0.00 39.47 3.46
801 934 1.439679 GTCGGTTACAAGCCCAGAAG 58.560 55.000 0.00 0.00 0.00 2.85
832 965 2.645394 TATTGATGGGCTGGGCTGGC 62.645 60.000 0.00 0.00 0.00 4.85
833 966 0.106066 TTATTGATGGGCTGGGCTGG 60.106 55.000 0.00 0.00 0.00 4.85
834 967 1.410153 GTTTATTGATGGGCTGGGCTG 59.590 52.381 0.00 0.00 0.00 4.85
835 968 1.689258 GGTTTATTGATGGGCTGGGCT 60.689 52.381 0.00 0.00 0.00 5.19
906 1041 3.071206 GAGGAGAGGCTGCCGTGA 61.071 66.667 13.96 0.00 0.00 4.35
985 1123 2.725008 CATCGGAGGAGACGAGCC 59.275 66.667 0.00 0.00 44.24 4.70
1009 1147 0.840729 GTACAGAGAGCGCGAAATCG 59.159 55.000 12.10 0.00 43.27 3.34
1138 1276 6.294453 CCATCACACAACCAATACTAGCAAAA 60.294 38.462 0.00 0.00 0.00 2.44
1141 1279 4.260985 CCATCACACAACCAATACTAGCA 58.739 43.478 0.00 0.00 0.00 3.49
1161 1299 1.002533 GGCCTACCTACTGGACCCA 59.997 63.158 0.00 0.00 37.04 4.51
1178 1326 1.734465 GTGGCTCTCAAGAATCAACGG 59.266 52.381 0.00 0.00 0.00 4.44
1182 1330 1.280133 CCCAGTGGCTCTCAAGAATCA 59.720 52.381 2.61 0.00 0.00 2.57
1188 1336 1.548357 GCTCTCCCAGTGGCTCTCAA 61.548 60.000 2.61 0.00 0.00 3.02
1191 1339 3.073735 CGCTCTCCCAGTGGCTCT 61.074 66.667 2.61 0.00 0.00 4.09
1256 1406 1.208165 AGGAAGGGGTTACTGGCTGG 61.208 60.000 0.00 0.00 0.00 4.85
1275 1429 6.459066 GCTCACACCAGAATAATAGCAGATA 58.541 40.000 0.00 0.00 0.00 1.98
1299 1453 1.746470 TGCAGATGAAGCATCACTGG 58.254 50.000 17.25 3.47 42.72 4.00
1308 1462 1.471287 CACCACACCATGCAGATGAAG 59.529 52.381 0.00 0.00 0.00 3.02
1309 1463 1.536940 CACCACACCATGCAGATGAA 58.463 50.000 0.00 0.00 0.00 2.57
1310 1464 0.322726 CCACCACACCATGCAGATGA 60.323 55.000 0.00 0.00 0.00 2.92
1311 1465 1.940883 GCCACCACACCATGCAGATG 61.941 60.000 0.00 0.00 0.00 2.90
1312 1466 1.679977 GCCACCACACCATGCAGAT 60.680 57.895 0.00 0.00 0.00 2.90
1313 1467 2.282391 GCCACCACACCATGCAGA 60.282 61.111 0.00 0.00 0.00 4.26
1324 1478 3.215568 CCACGTTTGCAGCCACCA 61.216 61.111 0.00 0.00 0.00 4.17
1346 1500 2.202676 GACGCTCAGAGCTTCGGG 60.203 66.667 20.39 6.77 39.60 5.14
1347 1501 2.202676 GGACGCTCAGAGCTTCGG 60.203 66.667 20.39 7.15 40.03 4.30
1348 1502 1.515952 CAGGACGCTCAGAGCTTCG 60.516 63.158 20.39 7.51 40.03 3.79
1349 1503 1.809209 GCAGGACGCTCAGAGCTTC 60.809 63.158 20.39 19.44 39.60 3.86
1350 1504 2.264166 GCAGGACGCTCAGAGCTT 59.736 61.111 20.39 11.34 39.60 3.74
1351 1505 3.768922 GGCAGGACGCTCAGAGCT 61.769 66.667 20.39 7.43 39.60 4.09
1353 1507 3.691744 GACGGCAGGACGCTCAGAG 62.692 68.421 0.00 0.00 41.91 3.35
1354 1508 3.749064 GACGGCAGGACGCTCAGA 61.749 66.667 0.00 0.00 41.91 3.27
1357 1511 4.838486 CTCGACGGCAGGACGCTC 62.838 72.222 0.00 0.00 41.91 5.03
1361 1515 1.078759 CACAATCTCGACGGCAGGAC 61.079 60.000 0.00 0.00 0.00 3.85
1363 1517 1.811266 CCACAATCTCGACGGCAGG 60.811 63.158 0.00 0.00 0.00 4.85
1368 1522 1.068474 GACAACCCACAATCTCGACG 58.932 55.000 0.00 0.00 0.00 5.12
1371 1525 2.698803 TGATGACAACCCACAATCTCG 58.301 47.619 0.00 0.00 0.00 4.04
1382 1536 3.560068 ACGGACAGACTTTTGATGACAAC 59.440 43.478 0.00 0.00 35.63 3.32
1387 1541 5.339990 ACAAAAACGGACAGACTTTTGATG 58.660 37.500 17.33 0.94 38.40 3.07
1419 1573 2.676471 ACCCAGCAATGGTTCGCC 60.676 61.111 0.00 0.00 29.75 5.54
1425 1579 0.901580 AGCCAAAGACCCAGCAATGG 60.902 55.000 0.00 0.00 0.00 3.16
1464 1621 1.264557 CGATGTCGCGACCTTCTAGAT 59.735 52.381 34.34 20.04 0.00 1.98
1475 1632 3.554692 GCCCTTGACGATGTCGCG 61.555 66.667 0.00 0.00 44.43 5.87
1558 1739 4.637534 TGGAGCAGCAGATACAGAATTTTC 59.362 41.667 0.00 0.00 0.00 2.29
1587 1768 1.354506 CAGCCTAATTGCAGCGCTC 59.645 57.895 7.13 2.98 0.00 5.03
1588 1769 2.117156 CCAGCCTAATTGCAGCGCT 61.117 57.895 2.64 2.64 0.00 5.92
1589 1770 2.410469 CCAGCCTAATTGCAGCGC 59.590 61.111 0.00 0.00 0.00 5.92
1590 1771 2.484062 CCCCAGCCTAATTGCAGCG 61.484 63.158 0.00 0.00 0.00 5.18
1591 1772 0.106719 TACCCCAGCCTAATTGCAGC 60.107 55.000 0.00 0.00 0.00 5.25
1603 1784 5.780793 AGGATTAGTAATAGCACTACCCCAG 59.219 44.000 0.00 0.00 30.76 4.45
1639 1822 9.313118 GTGACCAAAAGAACAGTTCAAAATATT 57.687 29.630 15.85 0.00 0.00 1.28
1640 1823 8.474025 TGTGACCAAAAGAACAGTTCAAAATAT 58.526 29.630 15.85 0.00 0.00 1.28
1643 1826 6.090483 TGTGACCAAAAGAACAGTTCAAAA 57.910 33.333 15.85 0.00 0.00 2.44
1647 1830 3.128589 TGCTGTGACCAAAAGAACAGTTC 59.871 43.478 5.00 5.00 41.65 3.01
1663 1846 2.160219 ACGCATACAATTCTGTGCTGTG 59.840 45.455 1.36 0.00 36.96 3.66
1682 1865 1.671328 TCAGCAGAGAAGTATCGGACG 59.329 52.381 0.00 0.00 0.00 4.79
1686 1869 5.886715 CTGAATTCAGCAGAGAAGTATCG 57.113 43.478 21.96 0.00 37.15 2.92
1725 1908 6.291377 ACACTAGGCTTATACCAACATGATG 58.709 40.000 0.00 0.00 0.00 3.07
1793 1976 9.418839 ACTCTTATATTAGTTTACGGAGGAAGT 57.581 33.333 0.00 0.00 0.00 3.01
1794 1977 9.680315 CACTCTTATATTAGTTTACGGAGGAAG 57.320 37.037 0.00 0.00 0.00 3.46
1795 1978 9.193806 ACACTCTTATATTAGTTTACGGAGGAA 57.806 33.333 0.00 0.00 0.00 3.36
1796 1979 8.757982 ACACTCTTATATTAGTTTACGGAGGA 57.242 34.615 0.00 0.00 0.00 3.71
1797 1980 9.813446 AAACACTCTTATATTAGTTTACGGAGG 57.187 33.333 0.00 0.00 0.00 4.30
1859 2042 9.706691 CATGAAAACTACTTCCTCTGTAAACTA 57.293 33.333 0.00 0.00 0.00 2.24
1860 2043 8.429641 TCATGAAAACTACTTCCTCTGTAAACT 58.570 33.333 0.00 0.00 0.00 2.66
1861 2044 8.603242 TCATGAAAACTACTTCCTCTGTAAAC 57.397 34.615 0.00 0.00 0.00 2.01
1862 2045 8.429641 ACTCATGAAAACTACTTCCTCTGTAAA 58.570 33.333 0.00 0.00 0.00 2.01
1863 2046 7.963532 ACTCATGAAAACTACTTCCTCTGTAA 58.036 34.615 0.00 0.00 0.00 2.41
1864 2047 7.540474 ACTCATGAAAACTACTTCCTCTGTA 57.460 36.000 0.00 0.00 0.00 2.74
1865 2048 6.426646 ACTCATGAAAACTACTTCCTCTGT 57.573 37.500 0.00 0.00 0.00 3.41
1866 2049 8.091449 ACTTACTCATGAAAACTACTTCCTCTG 58.909 37.037 0.00 0.00 0.00 3.35
1867 2050 8.196378 ACTTACTCATGAAAACTACTTCCTCT 57.804 34.615 0.00 0.00 0.00 3.69
1869 2052 9.877178 CATACTTACTCATGAAAACTACTTCCT 57.123 33.333 0.00 0.00 0.00 3.36
1870 2053 9.871238 TCATACTTACTCATGAAAACTACTTCC 57.129 33.333 0.00 0.00 0.00 3.46
1891 2074 6.147164 TCCGCAAAATAATCCTCGATTCATAC 59.853 38.462 0.00 0.00 33.95 2.39
1912 2095 4.883354 CCCAGCAATCCCCTCCGC 62.883 72.222 0.00 0.00 0.00 5.54
1914 2097 1.380380 CAACCCAGCAATCCCCTCC 60.380 63.158 0.00 0.00 0.00 4.30
1916 2099 2.037847 GCAACCCAGCAATCCCCT 59.962 61.111 0.00 0.00 0.00 4.79
2003 2187 2.288579 TGCAAATCAAGGAAGCAAGCAG 60.289 45.455 0.00 0.00 31.42 4.24
2005 2189 2.443887 TGCAAATCAAGGAAGCAAGC 57.556 45.000 0.00 0.00 31.42 4.01
2367 2552 0.178967 TGCCCCATTTCAGCTTGACA 60.179 50.000 0.00 0.00 0.00 3.58
2475 2662 2.945447 TTAGCACAATTGAGGCATGC 57.055 45.000 22.28 9.90 36.52 4.06
2577 2764 0.965363 AGGTAAAATGGGCAGCCACG 60.965 55.000 15.19 0.00 0.00 4.94
2584 2771 2.091885 TCCTCCATCAGGTAAAATGGGC 60.092 50.000 1.80 0.00 43.95 5.36
2606 2793 4.918810 AATTGACAAAACACAGGGAGTC 57.081 40.909 0.00 0.00 0.00 3.36
2613 2800 4.926238 GTGTGGTGAAATTGACAAAACACA 59.074 37.500 17.74 12.36 36.62 3.72
2656 2843 3.058224 ACCACTTAGCTGCAATTCGTTTC 60.058 43.478 1.02 0.00 0.00 2.78
2661 2848 2.351726 CGGTACCACTTAGCTGCAATTC 59.648 50.000 13.54 0.00 0.00 2.17
2681 2868 2.849942 TGCCCATCAATGTATTCCTCG 58.150 47.619 0.00 0.00 0.00 4.63
2833 3021 9.699703 GGGAGTTTTAGTGTGCAATTTTAAATA 57.300 29.630 0.00 0.00 0.00 1.40
2834 3022 8.207545 TGGGAGTTTTAGTGTGCAATTTTAAAT 58.792 29.630 0.00 0.00 0.00 1.40
2835 3023 7.556844 TGGGAGTTTTAGTGTGCAATTTTAAA 58.443 30.769 0.00 0.00 0.00 1.52
2836 3024 7.113658 TGGGAGTTTTAGTGTGCAATTTTAA 57.886 32.000 0.00 0.00 0.00 1.52
2837 3025 6.716934 TGGGAGTTTTAGTGTGCAATTTTA 57.283 33.333 0.00 0.00 0.00 1.52
2838 3026 5.606348 TGGGAGTTTTAGTGTGCAATTTT 57.394 34.783 0.00 0.00 0.00 1.82
2849 3037 8.025445 CAGAAAATGAGACAATGGGAGTTTTAG 58.975 37.037 0.00 0.00 0.00 1.85
2927 3129 2.501723 CTGCCACATCTACAGTACCCTT 59.498 50.000 0.00 0.00 0.00 3.95
2976 3178 7.489160 ACTCGCATATGTGATGTAAGACTAAA 58.511 34.615 18.88 0.00 33.67 1.85
2978 3180 6.635030 ACTCGCATATGTGATGTAAGACTA 57.365 37.500 18.88 0.00 33.67 2.59
3010 3212 6.039047 CAGCAAAACAGATAGTTATGGCATCT 59.961 38.462 1.65 0.00 40.26 2.90
3081 3284 0.895530 GAATGTCCGTGTCCTCCTCA 59.104 55.000 0.00 0.00 0.00 3.86
3129 3332 1.614903 CAGCAAGCATCAACCAGGAAA 59.385 47.619 0.00 0.00 0.00 3.13
3214 3418 7.161404 ACTAGAGTTAACATGAGTTCAATGCA 58.839 34.615 8.61 0.00 39.15 3.96
3217 3421 9.429359 CAGAACTAGAGTTAACATGAGTTCAAT 57.571 33.333 29.00 17.45 43.29 2.57
3263 3467 4.085107 GCCGTTTCAAACATGCAAGTTAAG 60.085 41.667 7.88 4.43 0.00 1.85
3295 3499 3.261390 AGGATCAGGAGCTATCAGCAATC 59.739 47.826 0.38 0.00 45.56 2.67
3307 3511 1.153289 CCAACGGCAGGATCAGGAG 60.153 63.158 0.00 0.00 0.00 3.69
3366 3570 5.921976 TCAGCAAATACAGTTCAAATTGCAG 59.078 36.000 10.45 3.16 44.08 4.41
3544 3748 5.846473 GCGAAGTTGTTCTTTAGCAGTAAAG 59.154 40.000 0.00 0.16 44.61 1.85
3649 3853 6.249911 AGTTGATCATCACTCATTCAGGAT 57.750 37.500 6.55 0.00 0.00 3.24
3660 3864 7.062605 CCTTAAAACATGCAAGTTGATCATCAC 59.937 37.037 8.27 0.00 0.00 3.06
3743 3947 5.115472 GCGCAAATACAACCATCATATTTCG 59.885 40.000 0.30 0.00 0.00 3.46
3749 3953 3.865011 TTGCGCAAATACAACCATCAT 57.135 38.095 22.78 0.00 0.00 2.45
3780 3984 3.006940 GGTCAGCAATTCCACGACATAA 58.993 45.455 0.00 0.00 0.00 1.90
3784 3988 1.131126 CATGGTCAGCAATTCCACGAC 59.869 52.381 0.00 0.00 33.91 4.34
3842 4046 4.406069 CCAAGTTCATGCGTTAATCACTG 58.594 43.478 0.00 0.00 0.00 3.66
3848 4053 2.606795 GCAAGCCAAGTTCATGCGTTAA 60.607 45.455 0.00 0.00 0.00 2.01
3928 4139 5.573219 AGAATCAATGGTCTGATCCACAAA 58.427 37.500 1.87 0.00 40.51 2.83
3929 4140 5.183530 AGAATCAATGGTCTGATCCACAA 57.816 39.130 1.87 0.00 40.51 3.33
3930 4141 4.849813 AGAATCAATGGTCTGATCCACA 57.150 40.909 1.87 0.00 40.51 4.17
3931 4142 6.825721 ACTTTAGAATCAATGGTCTGATCCAC 59.174 38.462 1.87 0.00 40.51 4.02
3932 4143 6.825213 CACTTTAGAATCAATGGTCTGATCCA 59.175 38.462 0.00 2.26 42.01 3.41
3933 4144 6.825721 ACACTTTAGAATCAATGGTCTGATCC 59.174 38.462 0.00 0.00 34.90 3.36
3950 4161 4.929808 ACGATGCCTGAACTTACACTTTAG 59.070 41.667 0.00 0.00 0.00 1.85
3952 4163 3.740115 ACGATGCCTGAACTTACACTTT 58.260 40.909 0.00 0.00 0.00 2.66
3953 4164 3.402628 ACGATGCCTGAACTTACACTT 57.597 42.857 0.00 0.00 0.00 3.16
3955 4166 2.092211 CGAACGATGCCTGAACTTACAC 59.908 50.000 0.00 0.00 0.00 2.90
3956 4167 2.333926 CGAACGATGCCTGAACTTACA 58.666 47.619 0.00 0.00 0.00 2.41
3957 4168 1.659098 CCGAACGATGCCTGAACTTAC 59.341 52.381 0.00 0.00 0.00 2.34
3971 4210 3.978687 AGGATAGCATAGAAACCGAACG 58.021 45.455 0.00 0.00 0.00 3.95
4007 4280 6.088217 GCTTGTTTTTCTTTATCTCGGAAAGC 59.912 38.462 0.00 0.00 34.51 3.51
4035 4311 4.420522 TCCATCCACGATTCATGATTCA 57.579 40.909 15.82 0.00 0.00 2.57
4046 4322 1.945354 GCGGTCTCTTCCATCCACGA 61.945 60.000 0.00 0.00 0.00 4.35



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.