Multiple sequence alignment - TraesCS7A01G495400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G495400 chr7A 100.000 7027 0 0 1 7027 685587767 685580741 0.000000e+00 12977.0
1 TraesCS7A01G495400 chr7A 86.651 427 35 11 6582 6992 671782153 671782573 2.990000e-123 453.0
2 TraesCS7A01G495400 chr7A 79.860 571 88 16 46 612 117674144 117674691 6.610000e-105 392.0
3 TraesCS7A01G495400 chr7A 85.455 275 22 10 5806 6080 685513816 685513560 3.230000e-68 270.0
4 TraesCS7A01G495400 chr7A 85.455 275 22 10 5806 6080 685565364 685565108 3.230000e-68 270.0
5 TraesCS7A01G495400 chr7A 92.308 156 10 2 3902 4055 486929939 486930094 3.300000e-53 220.0
6 TraesCS7A01G495400 chr7A 91.824 159 10 3 3898 4054 201987159 201987002 1.190000e-52 219.0
7 TraesCS7A01G495400 chr7A 93.204 103 6 1 6511 6613 671782044 671782145 4.390000e-32 150.0
8 TraesCS7A01G495400 chr7D 96.405 2698 78 11 3389 6079 593035830 593033145 0.000000e+00 4427.0
9 TraesCS7A01G495400 chr7D 92.895 2660 115 30 615 3227 593038461 593035829 0.000000e+00 3797.0
10 TraesCS7A01G495400 chr7D 91.183 431 20 6 6083 6507 593033110 593032692 2.840000e-158 569.0
11 TraesCS7A01G495400 chr7D 83.254 633 73 19 1 612 21095140 21095760 1.030000e-152 551.0
12 TraesCS7A01G495400 chr7D 84.392 551 42 18 6505 7027 593031857 593031323 1.050000e-137 501.0
13 TraesCS7A01G495400 chr7D 84.047 257 21 8 5814 6068 593028325 593028087 5.480000e-56 230.0
14 TraesCS7A01G495400 chr7D 92.949 156 9 2 3902 4055 436961794 436961949 7.090000e-55 226.0
15 TraesCS7A01G495400 chr7B 94.041 2702 129 18 3389 6079 668204760 668207440 0.000000e+00 4069.0
16 TraesCS7A01G495400 chr7B 89.127 1214 115 9 1964 3177 668203375 668204571 0.000000e+00 1495.0
17 TraesCS7A01G495400 chr7B 88.368 533 40 9 6505 7027 668213511 668214031 7.740000e-174 621.0
18 TraesCS7A01G495400 chr7B 88.235 442 23 12 6083 6507 668207475 668207904 1.050000e-137 501.0
19 TraesCS7A01G495400 chr7B 82.008 478 44 26 624 1073 668201640 668202103 1.110000e-97 368.0
20 TraesCS7A01G495400 chr7B 92.949 156 9 2 3902 4055 453623289 453623444 7.090000e-55 226.0
21 TraesCS7A01G495400 chr5D 87.958 573 56 7 1 561 333379768 333380339 0.000000e+00 664.0
22 TraesCS7A01G495400 chr5D 81.310 626 70 19 1 611 40186040 40185447 1.380000e-126 464.0
23 TraesCS7A01G495400 chr6B 86.469 606 76 5 13 615 696633068 696632466 0.000000e+00 660.0
24 TraesCS7A01G495400 chr6B 86.011 529 62 4 99 615 52821392 52820864 2.210000e-154 556.0
25 TraesCS7A01G495400 chr2B 82.907 626 88 9 1 607 620825344 620824719 4.790000e-151 545.0
26 TraesCS7A01G495400 chr2B 95.322 171 8 0 3222 3392 342280947 342280777 8.980000e-69 272.0
27 TraesCS7A01G495400 chr1B 85.458 502 66 7 1 498 583451758 583451260 3.760000e-142 516.0
28 TraesCS7A01G495400 chr1D 81.302 599 89 12 1 590 300319504 300318920 1.380000e-126 464.0
29 TraesCS7A01G495400 chr1D 96.491 171 5 1 3225 3395 393753450 393753281 1.490000e-71 281.0
30 TraesCS7A01G495400 chr1D 94.972 179 7 2 3226 3404 490423153 490423329 5.370000e-71 279.0
31 TraesCS7A01G495400 chr1A 81.142 578 97 9 1 574 453089282 453088713 2.990000e-123 453.0
32 TraesCS7A01G495400 chr1A 80.496 564 83 11 13 563 516694222 516694771 2.360000e-109 407.0
33 TraesCS7A01G495400 chr1A 92.357 157 11 1 3899 4054 385659291 385659135 9.170000e-54 222.0
34 TraesCS7A01G495400 chr1A 76.190 315 57 14 12 314 245123926 245123618 4.390000e-32 150.0
35 TraesCS7A01G495400 chr1A 75.000 300 65 8 11 302 588914694 588914397 5.720000e-26 130.0
36 TraesCS7A01G495400 chr3D 81.122 588 69 10 1 574 37523909 37523350 3.890000e-117 433.0
37 TraesCS7A01G495400 chr3D 92.708 192 11 3 3219 3407 7607387 7607578 2.500000e-69 274.0
38 TraesCS7A01G495400 chr3D 95.000 40 2 0 573 612 565815289 565815250 5.880000e-06 63.9
39 TraesCS7A01G495400 chr2A 76.789 629 117 22 1 616 221299857 221299245 6.800000e-85 326.0
40 TraesCS7A01G495400 chr2A 91.083 157 13 1 3898 4054 329688177 329688022 1.990000e-50 211.0
41 TraesCS7A01G495400 chr5B 96.089 179 7 0 3213 3391 157026380 157026202 6.890000e-75 292.0
42 TraesCS7A01G495400 chr2D 96.532 173 6 0 3222 3394 560959481 560959653 3.210000e-73 287.0
43 TraesCS7A01G495400 chr2D 95.402 174 8 0 3217 3390 24312184 24312357 1.930000e-70 278.0
44 TraesCS7A01G495400 chr2D 95.402 174 8 0 3218 3391 426427793 426427966 1.930000e-70 278.0
45 TraesCS7A01G495400 chr5A 96.471 170 6 0 3224 3393 290391863 290391694 1.490000e-71 281.0
46 TraesCS7A01G495400 chr5A 92.157 153 11 1 3903 4054 86662171 86662019 1.540000e-51 215.0
47 TraesCS7A01G495400 chr5A 94.595 37 2 0 579 615 513698238 513698274 2.740000e-04 58.4
48 TraesCS7A01G495400 chr4A 80.000 175 35 0 11 185 71171010 71170836 5.720000e-26 130.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G495400 chr7A 685580741 685587767 7026 True 12977.00 12977 100.00000 1 7027 1 chr7A.!!$R4 7026
1 TraesCS7A01G495400 chr7A 117674144 117674691 547 False 392.00 392 79.86000 46 612 1 chr7A.!!$F1 566
2 TraesCS7A01G495400 chr7A 671782044 671782573 529 False 301.50 453 89.92750 6511 6992 2 chr7A.!!$F3 481
3 TraesCS7A01G495400 chr7D 593028087 593038461 10374 True 1904.80 4427 89.78440 615 7027 5 chr7D.!!$R1 6412
4 TraesCS7A01G495400 chr7D 21095140 21095760 620 False 551.00 551 83.25400 1 612 1 chr7D.!!$F1 611
5 TraesCS7A01G495400 chr7B 668201640 668207904 6264 False 1608.25 4069 88.35275 624 6507 4 chr7B.!!$F3 5883
6 TraesCS7A01G495400 chr7B 668213511 668214031 520 False 621.00 621 88.36800 6505 7027 1 chr7B.!!$F2 522
7 TraesCS7A01G495400 chr5D 333379768 333380339 571 False 664.00 664 87.95800 1 561 1 chr5D.!!$F1 560
8 TraesCS7A01G495400 chr5D 40185447 40186040 593 True 464.00 464 81.31000 1 611 1 chr5D.!!$R1 610
9 TraesCS7A01G495400 chr6B 696632466 696633068 602 True 660.00 660 86.46900 13 615 1 chr6B.!!$R2 602
10 TraesCS7A01G495400 chr6B 52820864 52821392 528 True 556.00 556 86.01100 99 615 1 chr6B.!!$R1 516
11 TraesCS7A01G495400 chr2B 620824719 620825344 625 True 545.00 545 82.90700 1 607 1 chr2B.!!$R2 606
12 TraesCS7A01G495400 chr1D 300318920 300319504 584 True 464.00 464 81.30200 1 590 1 chr1D.!!$R1 589
13 TraesCS7A01G495400 chr1A 453088713 453089282 569 True 453.00 453 81.14200 1 574 1 chr1A.!!$R3 573
14 TraesCS7A01G495400 chr1A 516694222 516694771 549 False 407.00 407 80.49600 13 563 1 chr1A.!!$F1 550
15 TraesCS7A01G495400 chr3D 37523350 37523909 559 True 433.00 433 81.12200 1 574 1 chr3D.!!$R1 573
16 TraesCS7A01G495400 chr2A 221299245 221299857 612 True 326.00 326 76.78900 1 616 1 chr2A.!!$R1 615

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
764 831 0.443869 GCGCGAATCTTCTCTGCAAA 59.556 50.000 12.10 0.00 0.00 3.68 F
1204 1643 0.036294 GTTAAGCGGGAGGAAGTGCT 60.036 55.000 0.00 0.00 39.89 4.40 F
1405 1880 0.305313 CTACTCGCTAGCTCGGTGTC 59.695 60.000 13.93 0.00 0.00 3.67 F
2519 3123 0.245539 TCTACAGGTTTTCTCGGCCG 59.754 55.000 22.12 22.12 0.00 6.13 F
2528 3132 0.753867 TTTCTCGGCCGCATACCATA 59.246 50.000 23.51 0.00 0.00 2.74 F
3240 3991 1.639628 TCTTCTACTCCCTCCGTTCCT 59.360 52.381 0.00 0.00 0.00 3.36 F
3581 4332 2.352960 GCAGTTCTCCCGCTTCTATTTG 59.647 50.000 0.00 0.00 0.00 2.32 F
4826 5585 0.603569 TCAGAAGGTCGGCAGTCTTC 59.396 55.000 11.96 11.96 37.68 2.87 F
5715 6477 0.392336 GCATGGGTTTTTGCAGGTCA 59.608 50.000 0.00 0.00 38.72 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2295 2899 1.128692 GATGGACAAAGAAACTCGCCG 59.871 52.381 0.00 0.00 0.00 6.46 R
2435 3039 1.134521 TCGTGTGCTTCAGTTTCAGGT 60.135 47.619 0.00 0.00 0.00 4.00 R
3006 3617 1.686587 GGCTTGTTAACCTGGCAAGTT 59.313 47.619 6.72 6.72 40.99 2.66 R
3581 4332 0.388907 TTCACCGCCGTGTAACTAGC 60.389 55.000 5.09 0.00 41.09 3.42 R
3987 4742 1.779157 CGGATGTATACAGACGCGTTG 59.221 52.381 15.53 16.07 0.00 4.10 R
4815 5574 0.320771 GGCTTTGAGAAGACTGCCGA 60.321 55.000 0.00 0.00 37.94 5.54 R
4983 5742 3.319972 AGCAATCAACAAATGAGCACTGT 59.680 39.130 0.00 0.00 42.53 3.55 R
5847 6610 0.251341 AGAAGGATGCGGCAAAAGGT 60.251 50.000 6.82 0.00 0.00 3.50 R
6545 8195 0.261696 ACCCACTTTGCAAGGAGGTT 59.738 50.000 20.67 6.76 35.29 3.50 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 54 1.301479 GACGGAAGAACGCCAAGGT 60.301 57.895 0.00 0.00 37.37 3.50
59 62 3.120086 AACGCCAAGGTGCTCCAGT 62.120 57.895 7.70 0.00 35.89 4.00
199 214 1.725557 CCGACACCTCCGATGACGAT 61.726 60.000 0.00 0.00 42.66 3.73
324 351 1.706287 GCCGCCTCCGTCTTCAATTC 61.706 60.000 0.00 0.00 0.00 2.17
404 434 6.312141 TGTAGATCTTTTGGACATCCATCA 57.688 37.500 0.00 0.00 46.97 3.07
564 603 0.843309 TTTGAGGAGTGCCCAGTCAA 59.157 50.000 5.56 0.00 37.41 3.18
574 613 2.203015 CCAGTCAATACCCGCGGG 60.203 66.667 42.17 42.17 42.03 6.13
630 679 2.088423 GTTGCACCATCCGGTATGAAA 58.912 47.619 13.47 1.84 46.94 2.69
703 753 2.190578 GCCCGGCTGTAGATGCTT 59.809 61.111 0.71 0.00 0.00 3.91
706 756 0.597637 CCCGGCTGTAGATGCTTACG 60.598 60.000 0.00 0.00 0.00 3.18
709 759 2.268298 CGGCTGTAGATGCTTACGTTT 58.732 47.619 0.00 0.00 0.00 3.60
722 772 9.220767 AGATGCTTACGTTTTTAAATCTTCTCT 57.779 29.630 0.00 0.00 0.00 3.10
723 773 9.267096 GATGCTTACGTTTTTAAATCTTCTCTG 57.733 33.333 0.00 0.00 0.00 3.35
746 813 0.811281 AACGGGCTGCTAGATTTTGC 59.189 50.000 0.00 0.00 0.00 3.68
764 831 0.443869 GCGCGAATCTTCTCTGCAAA 59.556 50.000 12.10 0.00 0.00 3.68
838 905 6.811954 TCGCTGTCAAGGTCAATTATATACA 58.188 36.000 0.00 0.00 0.00 2.29
839 906 6.923508 TCGCTGTCAAGGTCAATTATATACAG 59.076 38.462 0.00 0.00 35.94 2.74
873 940 4.055360 GGAAAAAGGGAAATGGTTCAACG 58.945 43.478 0.00 0.00 35.25 4.10
881 948 2.060050 AATGGTTCAACGGTCCAACA 57.940 45.000 4.98 0.00 34.80 3.33
912 985 1.371267 CGTCGCACGACTCTTTGGA 60.371 57.895 19.74 0.00 46.05 3.53
913 986 1.337817 CGTCGCACGACTCTTTGGAG 61.338 60.000 19.74 0.00 46.05 3.86
951 1033 3.039526 CTCCCTCCCTCCCTCCCT 61.040 72.222 0.00 0.00 0.00 4.20
1123 1554 1.364901 CGTGGTTGGTGTACTCCGT 59.635 57.895 9.33 0.00 0.00 4.69
1146 1579 0.811281 ATTGGCGCCTTTCAGTTAGC 59.189 50.000 29.70 0.00 0.00 3.09
1197 1636 1.276989 TGGTTGTAGTTAAGCGGGAGG 59.723 52.381 0.00 0.00 0.00 4.30
1204 1643 0.036294 GTTAAGCGGGAGGAAGTGCT 60.036 55.000 0.00 0.00 39.89 4.40
1224 1663 0.831307 AGCTGACCTTACCGGATTCC 59.169 55.000 9.46 0.00 36.31 3.01
1298 1737 2.073037 CTCCTAGTACGCCGCCCTTC 62.073 65.000 0.00 0.00 0.00 3.46
1302 1741 2.842188 TAGTACGCCGCCCTTCTCCA 62.842 60.000 0.00 0.00 0.00 3.86
1354 1829 4.510340 AGTGTTTTGTCACTGGTAATCGAC 59.490 41.667 0.00 0.00 45.40 4.20
1355 1830 4.510340 GTGTTTTGTCACTGGTAATCGACT 59.490 41.667 0.00 0.00 35.68 4.18
1359 1834 2.492088 TGTCACTGGTAATCGACTGGAG 59.508 50.000 0.00 0.00 0.00 3.86
1379 1854 4.494199 GGAGAAGTCGTGTCAAAGTGTTTG 60.494 45.833 0.00 0.00 41.96 2.93
1389 1864 4.505191 TGTCAAAGTGTTTGTACTCGCTAC 59.495 41.667 0.00 0.00 41.36 3.58
1390 1865 4.743644 GTCAAAGTGTTTGTACTCGCTACT 59.256 41.667 0.00 0.00 41.36 2.57
1391 1866 4.980434 TCAAAGTGTTTGTACTCGCTACTC 59.020 41.667 0.00 0.00 41.36 2.59
1392 1867 3.198863 AGTGTTTGTACTCGCTACTCG 57.801 47.619 0.00 0.00 40.15 4.18
1393 1868 1.647702 GTGTTTGTACTCGCTACTCGC 59.352 52.381 0.00 0.00 38.27 5.03
1394 1869 1.538512 TGTTTGTACTCGCTACTCGCT 59.461 47.619 0.00 0.00 38.27 4.93
1395 1870 2.743664 TGTTTGTACTCGCTACTCGCTA 59.256 45.455 0.00 0.00 38.27 4.26
1405 1880 0.305313 CTACTCGCTAGCTCGGTGTC 59.695 60.000 13.93 0.00 0.00 3.67
1438 1914 0.935196 GCCGACGAAATGGATGTACC 59.065 55.000 0.00 0.00 39.54 3.34
1459 1935 1.669265 GGTAGGCGTAAATGAACCTGC 59.331 52.381 0.00 0.00 34.50 4.85
1535 2012 5.087323 TGTATTTTTGGGGGAAATACAGCA 58.913 37.500 14.84 0.00 46.70 4.41
1561 2038 1.989706 TTGGCCACCTGGTACTTTTC 58.010 50.000 3.88 0.00 37.57 2.29
1572 2049 5.070001 CCTGGTACTTTTCTTCATGGTGAA 58.930 41.667 0.00 0.00 34.79 3.18
1631 2109 2.706190 GCATGTACCAGGAGGATAGGTT 59.294 50.000 0.00 0.00 38.69 3.50
1762 2242 2.289444 TGCAAGGGCTGTGAAGTAGTAC 60.289 50.000 0.00 0.00 41.91 2.73
1769 2252 3.326747 GCTGTGAAGTAGTACCAAGGTG 58.673 50.000 1.07 0.00 0.00 4.00
1784 2267 2.568090 GTGATGCTGGGGCGTTTG 59.432 61.111 0.00 0.00 42.25 2.93
1786 2269 2.267351 TGATGCTGGGGCGTTTGTG 61.267 57.895 0.00 0.00 42.25 3.33
1800 2283 2.794631 CGTTTGTGGTTTCAGTTGAGCC 60.795 50.000 0.00 0.00 0.00 4.70
1807 2290 2.427095 GGTTTCAGTTGAGCCAGTGTTT 59.573 45.455 0.00 0.00 0.00 2.83
1808 2291 3.438360 GTTTCAGTTGAGCCAGTGTTTG 58.562 45.455 0.00 0.00 0.00 2.93
1855 2344 5.180117 GCGCTGATGTATTCCTGATATGTTT 59.820 40.000 0.00 0.00 0.00 2.83
1899 2388 7.283580 AGTTCCTCTGCTATTGTAGTAGTACTG 59.716 40.741 13.29 0.00 39.24 2.74
1911 2514 7.497925 TGTAGTAGTACTGTATGCTCAGATG 57.502 40.000 13.29 0.00 38.63 2.90
2015 2619 1.153449 TGTTATCAGGCGCTTCCCG 60.153 57.895 7.64 0.00 40.75 5.14
2029 2633 3.488090 CCCGTCTTCTTTCGGCGC 61.488 66.667 0.00 0.00 44.63 6.53
2049 2653 2.928116 GCACATAACGGACTGACCTTAC 59.072 50.000 0.00 0.00 36.31 2.34
2057 2661 2.629051 GGACTGACCTTACGGAAATGG 58.371 52.381 0.00 0.00 35.41 3.16
2077 2681 9.435688 GAAATGGAGTAGGCAAAATGTAAAAAT 57.564 29.630 0.00 0.00 0.00 1.82
2295 2899 2.817258 TCCATCCAACGAAATGGTGAAC 59.183 45.455 0.00 0.00 42.57 3.18
2423 3027 3.515330 AATACTTCTGCAAATGCTGGC 57.485 42.857 11.61 0.00 42.66 4.85
2435 3039 2.512692 ATGCTGGCCAATCACTACAA 57.487 45.000 7.01 0.00 0.00 2.41
2519 3123 0.245539 TCTACAGGTTTTCTCGGCCG 59.754 55.000 22.12 22.12 0.00 6.13
2528 3132 0.753867 TTTCTCGGCCGCATACCATA 59.246 50.000 23.51 0.00 0.00 2.74
2623 3227 1.678635 GTATGCTTGGGCTGTGGCA 60.679 57.895 0.00 0.00 40.87 4.92
2703 3307 3.018149 AGTCTCAGTTTCCCTACTAGCG 58.982 50.000 0.00 0.00 0.00 4.26
2788 3392 4.455606 AGCAGCACTTTTCTTCTACAGTT 58.544 39.130 0.00 0.00 0.00 3.16
2943 3554 6.900568 TTGCAGTCTAAAATGTTTTGGTTG 57.099 33.333 1.16 3.72 31.52 3.77
2984 3595 8.752254 TGCTTTCTATTATATCTGTTTCGAACG 58.248 33.333 0.00 0.00 0.00 3.95
3006 3617 6.938507 ACGTCTATGGAACCTAATGTTGTTA 58.061 36.000 0.00 0.00 37.29 2.41
3069 3680 2.487986 GGAATACTCTCCTGCAATGGGG 60.488 54.545 0.00 0.00 32.21 4.96
3232 3983 8.325477 ACTTAAGCATTTATCTTCTACTCCCT 57.675 34.615 1.29 0.00 0.00 4.20
3233 3984 8.425703 ACTTAAGCATTTATCTTCTACTCCCTC 58.574 37.037 1.29 0.00 0.00 4.30
3234 3985 5.816955 AGCATTTATCTTCTACTCCCTCC 57.183 43.478 0.00 0.00 0.00 4.30
3235 3986 4.282195 AGCATTTATCTTCTACTCCCTCCG 59.718 45.833 0.00 0.00 0.00 4.63
3236 3987 4.039366 GCATTTATCTTCTACTCCCTCCGT 59.961 45.833 0.00 0.00 0.00 4.69
3237 3988 5.453480 GCATTTATCTTCTACTCCCTCCGTT 60.453 44.000 0.00 0.00 0.00 4.44
3238 3989 5.848833 TTTATCTTCTACTCCCTCCGTTC 57.151 43.478 0.00 0.00 0.00 3.95
3239 3990 2.140839 TCTTCTACTCCCTCCGTTCC 57.859 55.000 0.00 0.00 0.00 3.62
3240 3991 1.639628 TCTTCTACTCCCTCCGTTCCT 59.360 52.381 0.00 0.00 0.00 3.36
3241 3992 2.848694 TCTTCTACTCCCTCCGTTCCTA 59.151 50.000 0.00 0.00 0.00 2.94
3242 3993 3.267812 TCTTCTACTCCCTCCGTTCCTAA 59.732 47.826 0.00 0.00 0.00 2.69
3243 3994 3.744940 TCTACTCCCTCCGTTCCTAAA 57.255 47.619 0.00 0.00 0.00 1.85
3244 3995 4.261411 TCTACTCCCTCCGTTCCTAAAT 57.739 45.455 0.00 0.00 0.00 1.40
3245 3996 5.393068 TCTACTCCCTCCGTTCCTAAATA 57.607 43.478 0.00 0.00 0.00 1.40
3246 3997 5.961897 TCTACTCCCTCCGTTCCTAAATAT 58.038 41.667 0.00 0.00 0.00 1.28
3247 3998 6.379579 TCTACTCCCTCCGTTCCTAAATATT 58.620 40.000 0.00 0.00 0.00 1.28
3248 3999 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
3249 4000 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
3250 4001 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
3251 4002 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
3252 4003 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
3253 4004 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
3254 4005 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
3255 4006 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
3256 4007 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
3257 4008 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
3258 4009 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
3259 4010 9.595823 CCGTTCCTAAATATTTGTCTTTCTAGA 57.404 33.333 11.05 0.00 0.00 2.43
3272 4023 9.573166 TTTGTCTTTCTAGAGATTTCAAATGGA 57.427 29.630 0.00 0.00 0.00 3.41
3273 4024 8.553459 TGTCTTTCTAGAGATTTCAAATGGAC 57.447 34.615 0.00 0.00 0.00 4.02
3274 4025 8.378565 TGTCTTTCTAGAGATTTCAAATGGACT 58.621 33.333 0.00 0.00 0.00 3.85
3275 4026 9.877178 GTCTTTCTAGAGATTTCAAATGGACTA 57.123 33.333 0.00 0.00 0.00 2.59
3276 4027 9.877178 TCTTTCTAGAGATTTCAAATGGACTAC 57.123 33.333 0.00 0.00 0.00 2.73
3277 4028 9.103861 CTTTCTAGAGATTTCAAATGGACTACC 57.896 37.037 0.00 0.00 0.00 3.18
3330 4081 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
3331 4082 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
3332 4083 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
3333 4084 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
3334 4085 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
3335 4086 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
3336 4087 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
3337 4088 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
3338 4089 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
3339 4090 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
3340 4091 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
3341 4092 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
3342 4093 5.079689 TCATTTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
3343 4094 4.868171 TCATTTTGCTCCGTATGTAGTCAC 59.132 41.667 0.00 0.00 0.00 3.67
3344 4095 4.530710 TTTTGCTCCGTATGTAGTCACT 57.469 40.909 0.00 0.00 0.00 3.41
3345 4096 4.530710 TTTGCTCCGTATGTAGTCACTT 57.469 40.909 0.00 0.00 0.00 3.16
3346 4097 3.503827 TGCTCCGTATGTAGTCACTTG 57.496 47.619 0.00 0.00 0.00 3.16
3347 4098 2.823747 TGCTCCGTATGTAGTCACTTGT 59.176 45.455 0.00 0.00 0.00 3.16
3348 4099 3.257375 TGCTCCGTATGTAGTCACTTGTT 59.743 43.478 0.00 0.00 0.00 2.83
3349 4100 3.612860 GCTCCGTATGTAGTCACTTGTTG 59.387 47.826 0.00 0.00 0.00 3.33
3350 4101 4.617530 GCTCCGTATGTAGTCACTTGTTGA 60.618 45.833 0.00 0.00 0.00 3.18
3351 4102 5.456548 TCCGTATGTAGTCACTTGTTGAA 57.543 39.130 0.00 0.00 35.39 2.69
3352 4103 5.845103 TCCGTATGTAGTCACTTGTTGAAA 58.155 37.500 0.00 0.00 35.39 2.69
3353 4104 6.460781 TCCGTATGTAGTCACTTGTTGAAAT 58.539 36.000 0.00 0.00 35.39 2.17
3354 4105 6.588756 TCCGTATGTAGTCACTTGTTGAAATC 59.411 38.462 0.00 0.00 35.39 2.17
3355 4106 6.590292 CCGTATGTAGTCACTTGTTGAAATCT 59.410 38.462 0.00 0.00 35.39 2.40
3356 4107 7.117812 CCGTATGTAGTCACTTGTTGAAATCTT 59.882 37.037 0.00 0.00 35.39 2.40
3357 4108 8.495949 CGTATGTAGTCACTTGTTGAAATCTTT 58.504 33.333 0.00 0.00 35.39 2.52
3360 4111 9.778741 ATGTAGTCACTTGTTGAAATCTTTAGA 57.221 29.630 0.00 0.00 35.39 2.10
3361 4112 9.607988 TGTAGTCACTTGTTGAAATCTTTAGAA 57.392 29.630 0.00 0.00 35.39 2.10
3364 4115 9.396022 AGTCACTTGTTGAAATCTTTAGAAAGA 57.604 29.630 7.15 7.15 41.72 2.52
3384 4135 9.780186 AGAAAGATAAATATTTAGGAACGGAGG 57.220 33.333 13.15 0.00 0.00 4.30
3385 4136 8.919777 AAAGATAAATATTTAGGAACGGAGGG 57.080 34.615 13.15 0.00 0.00 4.30
3386 4137 7.867160 AGATAAATATTTAGGAACGGAGGGA 57.133 36.000 13.15 0.00 0.00 4.20
3387 4138 7.908453 AGATAAATATTTAGGAACGGAGGGAG 58.092 38.462 13.15 0.00 0.00 4.30
3388 4139 5.970501 AAATATTTAGGAACGGAGGGAGT 57.029 39.130 0.00 0.00 0.00 3.85
3491 4242 6.182627 ACTTCTGAACTTTGATGGATATGCA 58.817 36.000 0.00 0.00 0.00 3.96
3581 4332 2.352960 GCAGTTCTCCCGCTTCTATTTG 59.647 50.000 0.00 0.00 0.00 2.32
3595 4346 3.441163 TCTATTTGCTAGTTACACGGCG 58.559 45.455 4.80 4.80 0.00 6.46
3886 4639 7.390718 AGGTTCCCGTATATTCATATTTTCTGC 59.609 37.037 0.00 0.00 0.00 4.26
3987 4742 6.781138 TGAAATGAGTGAACAAACACACTAC 58.219 36.000 0.00 0.00 45.54 2.73
4327 5086 3.697542 GGTATAAATGGGCCTCAAAACGT 59.302 43.478 4.53 0.00 0.00 3.99
4331 5090 2.524569 ATGGGCCTCAAAACGTTTTG 57.475 45.000 36.57 36.57 46.70 2.44
4429 5188 7.426929 AGCATTTCGTCCATTAGTTCATATC 57.573 36.000 0.00 0.00 0.00 1.63
4470 5229 8.443979 TGGAATATCATGGTATTTGGTGTGATA 58.556 33.333 12.47 0.00 34.30 2.15
4505 5264 7.444487 CCCATTATTACCTAAGTAAACAGAGCC 59.556 40.741 0.00 0.00 41.68 4.70
4506 5265 7.990886 CCATTATTACCTAAGTAAACAGAGCCA 59.009 37.037 0.00 0.00 41.68 4.75
4512 5271 6.068670 ACCTAAGTAAACAGAGCCAACATTT 58.931 36.000 0.00 0.00 0.00 2.32
4726 5485 8.420222 TGGAACTGTAATTTCATTTTGATGTGT 58.580 29.630 0.00 0.00 0.00 3.72
4815 5574 6.773976 TTCAGACATTTGTTTTCAGAAGGT 57.226 33.333 0.00 0.00 0.00 3.50
4826 5585 0.603569 TCAGAAGGTCGGCAGTCTTC 59.396 55.000 11.96 11.96 37.68 2.87
4853 5612 3.449737 AGCCATTGATATTTGCAACTGCT 59.550 39.130 0.00 0.00 42.66 4.24
4983 5742 7.716799 AATATCCTTTCATGGTTTGCTAACA 57.283 32.000 13.00 0.00 35.92 2.41
5035 5795 6.484364 ACAAACAATGTTCCCTTGAGAAAT 57.516 33.333 0.00 0.00 40.06 2.17
5042 5802 7.828717 ACAATGTTCCCTTGAGAAATTTTGTTT 59.171 29.630 0.00 0.00 0.00 2.83
5177 5937 8.856490 ATTTTGCTAAGAAACTTACTGTTGTG 57.144 30.769 0.00 0.00 39.13 3.33
5199 5959 3.572255 GGTTGCTGATTTAAACTCCCACA 59.428 43.478 0.00 0.00 0.00 4.17
5308 6068 4.242475 CAAATCTCTAACTGTACGCCACA 58.758 43.478 0.00 0.00 35.30 4.17
5341 6101 2.583024 TTCCACTGCAATGTCCATCA 57.417 45.000 0.00 0.00 0.00 3.07
5352 6112 9.941325 ACTGCAATGTCCATCATTAAATTTAAA 57.059 25.926 14.35 0.00 43.93 1.52
5582 6344 8.685838 TCTGTTTTAGCATTACAAGGTAAGTT 57.314 30.769 0.00 0.00 31.49 2.66
5620 6382 6.598850 CCATTTAAGCTTGCCCAAAACATAAT 59.401 34.615 9.86 0.00 0.00 1.28
5624 6386 5.736951 AGCTTGCCCAAAACATAATAACA 57.263 34.783 0.00 0.00 0.00 2.41
5625 6387 6.107901 AGCTTGCCCAAAACATAATAACAA 57.892 33.333 0.00 0.00 0.00 2.83
5626 6388 6.710278 AGCTTGCCCAAAACATAATAACAAT 58.290 32.000 0.00 0.00 0.00 2.71
5627 6389 7.167535 AGCTTGCCCAAAACATAATAACAATT 58.832 30.769 0.00 0.00 0.00 2.32
5628 6390 8.317679 AGCTTGCCCAAAACATAATAACAATTA 58.682 29.630 0.00 0.00 0.00 1.40
5715 6477 0.392336 GCATGGGTTTTTGCAGGTCA 59.608 50.000 0.00 0.00 38.72 4.02
5847 6610 0.036164 CATCAACACCAGTTCCCCGA 59.964 55.000 0.00 0.00 35.28 5.14
5916 6679 7.396540 AACATATTCAATCAGTTCACCTTCC 57.603 36.000 0.00 0.00 0.00 3.46
5951 6714 1.881973 CTGGAATGACACACCCTGTTG 59.118 52.381 0.00 0.00 31.03 3.33
5955 6718 2.260844 ATGACACACCCTGTTGACTG 57.739 50.000 0.00 0.00 31.03 3.51
5957 6720 1.768275 TGACACACCCTGTTGACTGAT 59.232 47.619 0.00 0.00 31.03 2.90
5964 6727 3.941483 CACCCTGTTGACTGATATTCACC 59.059 47.826 0.00 0.00 0.00 4.02
5987 6752 2.187685 CACATGGCTCCGCAGCTA 59.812 61.111 0.00 0.00 46.03 3.32
6079 6844 1.376037 GCCGGAGTAAAGCTGTGCT 60.376 57.895 5.05 0.00 42.56 4.40
6080 6845 1.639298 GCCGGAGTAAAGCTGTGCTG 61.639 60.000 5.05 0.00 39.62 4.41
6081 6846 0.320771 CCGGAGTAAAGCTGTGCTGT 60.321 55.000 0.00 0.00 39.62 4.40
6268 7075 1.681229 AAATAAGGCTCCCCACTCCA 58.319 50.000 0.00 0.00 0.00 3.86
6269 7076 1.681229 AATAAGGCTCCCCACTCCAA 58.319 50.000 0.00 0.00 0.00 3.53
6270 7077 0.919710 ATAAGGCTCCCCACTCCAAC 59.080 55.000 0.00 0.00 0.00 3.77
6271 7078 0.178873 TAAGGCTCCCCACTCCAACT 60.179 55.000 0.00 0.00 0.00 3.16
6272 7079 1.492993 AAGGCTCCCCACTCCAACTC 61.493 60.000 0.00 0.00 0.00 3.01
6276 7083 0.036875 CTCCCCACTCCAACTCCAAC 59.963 60.000 0.00 0.00 0.00 3.77
6286 7093 3.674997 TCCAACTCCAACTACATTCTGC 58.325 45.455 0.00 0.00 0.00 4.26
6321 7129 5.127682 AGAACTTGTGAATTTTGCTCTGGTT 59.872 36.000 0.00 0.00 0.00 3.67
6323 7131 3.624326 TGTGAATTTTGCTCTGGTTCG 57.376 42.857 0.00 0.00 0.00 3.95
6324 7132 2.948979 TGTGAATTTTGCTCTGGTTCGT 59.051 40.909 0.00 0.00 0.00 3.85
6325 7133 3.380004 TGTGAATTTTGCTCTGGTTCGTT 59.620 39.130 0.00 0.00 0.00 3.85
6358 7166 3.264666 TGTTTGGAACATTGCGCAC 57.735 47.368 11.12 0.00 39.30 5.34
6359 7167 0.457443 TGTTTGGAACATTGCGCACA 59.543 45.000 11.12 0.00 39.30 4.57
6360 7168 1.134995 TGTTTGGAACATTGCGCACAA 60.135 42.857 11.12 7.26 39.30 3.33
6379 7187 7.136119 CGCACAAACTTTCTTAAATCTTACCA 58.864 34.615 0.00 0.00 0.00 3.25
6391 7199 2.426431 TCTTACCAGGAGGGGTGAAA 57.574 50.000 0.00 0.00 42.39 2.69
6392 7200 2.708759 TCTTACCAGGAGGGGTGAAAA 58.291 47.619 0.00 0.00 42.39 2.29
6414 7222 5.574970 ATTGGCAAAATTGGTCCCTTTTA 57.425 34.783 3.01 0.00 0.00 1.52
6423 7231 8.558700 CAAAATTGGTCCCTTTTATGAAGTTTG 58.441 33.333 0.00 0.00 0.00 2.93
6432 7240 5.775195 CCTTTTATGAAGTTTGAACCCTCCT 59.225 40.000 0.00 0.00 0.00 3.69
6449 7257 6.181190 ACCCTCCTCTAAAATCTTAACAAGC 58.819 40.000 0.00 0.00 0.00 4.01
6450 7258 6.180472 CCCTCCTCTAAAATCTTAACAAGCA 58.820 40.000 0.00 0.00 0.00 3.91
6453 7261 8.023706 CCTCCTCTAAAATCTTAACAAGCAAAC 58.976 37.037 0.00 0.00 0.00 2.93
6485 7298 5.547465 TCTGTACAACACAAGGTTATCTGG 58.453 41.667 0.00 0.00 37.72 3.86
6499 7312 0.035317 ATCTGGCGCTGAACTTGACA 59.965 50.000 7.64 0.00 0.00 3.58
6606 8299 2.811855 TGCTGCCGCATGATTAAATTG 58.188 42.857 0.00 0.00 42.25 2.32
6613 8306 5.031578 GCCGCATGATTAAATTGTAACGAA 58.968 37.500 0.00 0.00 0.00 3.85
6624 8317 8.776680 TTAAATTGTAACGAAACTTCTTCTGC 57.223 30.769 0.00 0.00 0.00 4.26
6631 8324 7.853929 TGTAACGAAACTTCTTCTGCAATTTAC 59.146 33.333 0.00 0.00 0.00 2.01
6639 8333 7.373493 ACTTCTTCTGCAATTTACCTGAAATG 58.627 34.615 0.00 0.00 37.82 2.32
6707 8420 0.178961 ATGGCTGCAGCATGGATCAT 60.179 50.000 37.63 26.50 44.36 2.45
6708 8421 0.475044 TGGCTGCAGCATGGATCATA 59.525 50.000 37.63 10.76 44.36 2.15
6710 8423 2.168496 GGCTGCAGCATGGATCATAAT 58.832 47.619 37.63 0.00 44.36 1.28
6711 8424 2.094700 GGCTGCAGCATGGATCATAATG 60.095 50.000 37.63 0.00 44.36 1.90
6712 8425 2.557056 GCTGCAGCATGGATCATAATGT 59.443 45.455 33.36 0.00 34.26 2.71
6713 8426 3.005472 GCTGCAGCATGGATCATAATGTT 59.995 43.478 33.36 0.00 34.26 2.71
6714 8427 4.216902 GCTGCAGCATGGATCATAATGTTA 59.783 41.667 33.36 0.00 34.26 2.41
6715 8428 5.105877 GCTGCAGCATGGATCATAATGTTAT 60.106 40.000 33.36 0.00 34.26 1.89
6719 8432 7.094677 TGCAGCATGGATCATAATGTTATGTAC 60.095 37.037 11.37 7.58 38.24 2.90
6793 8506 8.829373 AAGAATAAAATTGTATCAGGCCTTCT 57.171 30.769 0.00 0.00 0.00 2.85
6858 8580 1.014564 GTGAAGTAGCGTCACCTGCC 61.015 60.000 4.31 0.00 39.62 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 37 1.597027 CACCTTGGCGTTCTTCCGT 60.597 57.895 0.00 0.00 0.00 4.69
51 54 1.250328 CTCAATGGCAAACTGGAGCA 58.750 50.000 0.00 0.00 0.00 4.26
59 62 0.250684 TCGGACTGCTCAATGGCAAA 60.251 50.000 0.00 0.00 41.94 3.68
199 214 0.469331 AGGAGGAGTTGTGGTCGTCA 60.469 55.000 0.00 0.00 31.71 4.35
273 300 3.248446 TTCCTCGTCGGCCCTTTGG 62.248 63.158 0.00 0.00 0.00 3.28
284 311 1.550976 GGAGATTCACCACTTCCTCGT 59.449 52.381 0.00 0.00 0.00 4.18
596 645 2.275380 GCAACCTGCAAATCCGGGT 61.275 57.895 0.00 0.00 46.35 5.28
630 679 8.824756 TTTAGACCATGAGAGTATCAACTACT 57.175 34.615 0.00 0.00 42.53 2.57
662 712 7.379529 GGCGTCTCAAATAATGTCAATTTATGG 59.620 37.037 0.00 0.00 0.00 2.74
676 726 1.153449 CAGCCGGGCGTCTCAAATA 60.153 57.895 14.39 0.00 0.00 1.40
686 736 0.880718 GTAAGCATCTACAGCCGGGC 60.881 60.000 12.11 12.11 0.00 6.13
703 753 9.228636 GTTTTGCAGAGAAGATTTAAAAACGTA 57.771 29.630 0.00 0.00 0.00 3.57
706 756 7.306574 CCCGTTTTGCAGAGAAGATTTAAAAAC 60.307 37.037 0.00 0.00 34.51 2.43
709 759 5.768317 CCCGTTTTGCAGAGAAGATTTAAA 58.232 37.500 0.00 0.00 0.00 1.52
718 768 2.260869 GCAGCCCGTTTTGCAGAGA 61.261 57.895 0.00 0.00 40.02 3.10
719 769 0.955428 TAGCAGCCCGTTTTGCAGAG 60.955 55.000 5.30 0.00 42.67 3.35
720 770 0.955428 CTAGCAGCCCGTTTTGCAGA 60.955 55.000 5.30 0.00 42.67 4.26
721 771 0.955428 TCTAGCAGCCCGTTTTGCAG 60.955 55.000 5.30 1.96 42.67 4.41
722 772 0.322456 ATCTAGCAGCCCGTTTTGCA 60.322 50.000 5.30 0.00 42.67 4.08
723 773 0.811281 AATCTAGCAGCCCGTTTTGC 59.189 50.000 0.00 0.00 40.57 3.68
746 813 2.096268 TGTTTTGCAGAGAAGATTCGCG 60.096 45.455 0.00 0.00 31.93 5.87
838 905 4.529377 TCCCTTTTTCCGAGTGTATGTACT 59.471 41.667 0.00 0.00 0.00 2.73
839 906 4.824289 TCCCTTTTTCCGAGTGTATGTAC 58.176 43.478 0.00 0.00 0.00 2.90
847 914 3.238788 ACCATTTCCCTTTTTCCGAGT 57.761 42.857 0.00 0.00 0.00 4.18
881 948 0.665835 TGCGACGCAAAGTCCAAATT 59.334 45.000 22.24 0.00 46.92 1.82
912 985 1.774217 TGGTGGAGAGCCCCAAACT 60.774 57.895 0.00 0.00 38.06 2.66
913 986 1.603739 GTGGTGGAGAGCCCCAAAC 60.604 63.158 0.00 0.00 38.06 2.93
914 987 2.840753 GGTGGTGGAGAGCCCCAAA 61.841 63.158 0.00 0.00 38.06 3.28
915 988 3.256960 GGTGGTGGAGAGCCCCAA 61.257 66.667 0.00 0.00 38.06 4.12
916 989 4.590553 TGGTGGTGGAGAGCCCCA 62.591 66.667 0.00 0.00 33.68 4.96
917 990 4.035102 GTGGTGGTGGAGAGCCCC 62.035 72.222 0.00 0.00 0.00 5.80
918 991 2.930562 AGTGGTGGTGGAGAGCCC 60.931 66.667 0.00 0.00 0.00 5.19
958 1043 3.302347 GAGTGGGCAGTGAGTCGGG 62.302 68.421 0.00 0.00 0.00 5.14
962 1047 2.930562 GGGGAGTGGGCAGTGAGT 60.931 66.667 0.00 0.00 0.00 3.41
1123 1554 0.537143 ACTGAAAGGCGCCAATCACA 60.537 50.000 31.54 18.77 39.30 3.58
1180 1619 2.901839 ACTTCCTCCCGCTTAACTACAA 59.098 45.455 0.00 0.00 0.00 2.41
1197 1636 2.735762 CGGTAAGGTCAGCTAGCACTTC 60.736 54.545 18.83 3.78 0.00 3.01
1204 1643 2.037144 GGAATCCGGTAAGGTCAGCTA 58.963 52.381 0.00 0.00 41.99 3.32
1224 1663 3.929948 GCATCGCTTTCGCTCCCG 61.930 66.667 0.00 0.00 35.26 5.14
1231 1670 2.897350 CTCCCCGGCATCGCTTTC 60.897 66.667 0.00 0.00 34.56 2.62
1302 1741 5.302313 CCTTTCGGCTTACTACTCCTATTCT 59.698 44.000 0.00 0.00 0.00 2.40
1354 1829 2.797156 CACTTTGACACGACTTCTCCAG 59.203 50.000 0.00 0.00 0.00 3.86
1355 1830 2.167693 ACACTTTGACACGACTTCTCCA 59.832 45.455 0.00 0.00 0.00 3.86
1359 1834 4.336532 ACAAACACTTTGACACGACTTC 57.663 40.909 1.75 0.00 43.26 3.01
1389 1864 2.023461 CGACACCGAGCTAGCGAG 59.977 66.667 9.55 7.30 38.22 5.03
1390 1865 4.175489 GCGACACCGAGCTAGCGA 62.175 66.667 9.55 0.00 38.22 4.93
1438 1914 1.931172 CAGGTTCATTTACGCCTACCG 59.069 52.381 0.00 0.00 44.21 4.02
1459 1935 5.465390 TGGTCAAACTATTTCAAGTCGTCTG 59.535 40.000 0.00 0.00 0.00 3.51
1535 2012 0.261696 ACCAGGTGGCCAAAGAAACT 59.738 50.000 7.24 0.00 39.32 2.66
1561 2038 3.539604 GTCCTCTCCATTCACCATGAAG 58.460 50.000 0.00 0.00 40.05 3.02
1572 2049 2.496899 AAAACATGCGTCCTCTCCAT 57.503 45.000 0.00 0.00 0.00 3.41
1595 2073 5.184864 TGGTACATGCTAAAAATTCACCAGG 59.815 40.000 0.00 0.00 0.00 4.45
1596 2074 6.266168 TGGTACATGCTAAAAATTCACCAG 57.734 37.500 0.00 0.00 0.00 4.00
1631 2109 5.044179 ACCATAAATCTCTTCCCCATTCACA 60.044 40.000 0.00 0.00 0.00 3.58
1762 2242 2.757099 GCCCCAGCATCACCTTGG 60.757 66.667 0.00 0.00 39.53 3.61
1769 2252 2.568090 CACAAACGCCCCAGCATC 59.432 61.111 0.00 0.00 39.83 3.91
1784 2267 1.334869 CACTGGCTCAACTGAAACCAC 59.665 52.381 0.00 0.00 0.00 4.16
1786 2269 1.680338 ACACTGGCTCAACTGAAACC 58.320 50.000 0.00 0.00 0.00 3.27
1800 2283 4.318760 CGTGTCTGACATAACCAAACACTG 60.319 45.833 14.37 0.00 34.77 3.66
1807 2290 2.034939 ACGTTCGTGTCTGACATAACCA 59.965 45.455 22.48 4.52 0.00 3.67
1808 2291 2.669364 ACGTTCGTGTCTGACATAACC 58.331 47.619 22.48 8.90 0.00 2.85
1855 2344 6.237901 AGGAACTGTGCATGAAACTAATACA 58.762 36.000 0.00 0.00 37.18 2.29
1917 2520 3.986572 CCGCAATGAATTTTACACAAGCA 59.013 39.130 0.00 0.00 0.00 3.91
2015 2619 1.355971 TATGTGCGCCGAAAGAAGAC 58.644 50.000 4.18 0.00 0.00 3.01
2029 2633 3.176708 CGTAAGGTCAGTCCGTTATGTG 58.823 50.000 0.00 0.00 41.99 3.21
2049 2653 3.443681 ACATTTTGCCTACTCCATTTCCG 59.556 43.478 0.00 0.00 0.00 4.30
2082 2686 7.296098 AGGATCAGCCAAGAAGATAATGATTT 58.704 34.615 0.00 0.00 40.02 2.17
2083 2687 6.850234 AGGATCAGCCAAGAAGATAATGATT 58.150 36.000 0.00 0.00 40.02 2.57
2295 2899 1.128692 GATGGACAAAGAAACTCGCCG 59.871 52.381 0.00 0.00 0.00 6.46
2423 3027 5.063204 TCAGTTTCAGGTTGTAGTGATTGG 58.937 41.667 0.00 0.00 0.00 3.16
2435 3039 1.134521 TCGTGTGCTTCAGTTTCAGGT 60.135 47.619 0.00 0.00 0.00 4.00
2519 3123 8.904099 ACTTAACTGTTCCTATTATGGTATGC 57.096 34.615 0.00 0.00 0.00 3.14
2528 3132 8.950210 CATCAACATGACTTAACTGTTCCTATT 58.050 33.333 0.00 0.00 30.99 1.73
2623 3227 7.563188 TCTTAGATCCAGAGAGAGTAAAAGCAT 59.437 37.037 0.00 0.00 0.00 3.79
2703 3307 4.314740 AATGTCAGATAAGCTCTCGACC 57.685 45.455 13.41 0.39 34.12 4.79
2814 3418 2.300956 TGCCTACATGGGAGCAAAAA 57.699 45.000 0.00 0.00 36.00 1.94
2956 3567 9.817809 TTCGAAACAGATATAATAGAAAGCAGT 57.182 29.630 0.00 0.00 0.00 4.40
2984 3595 8.788325 AGTTAACAACATTAGGTTCCATAGAC 57.212 34.615 8.61 0.00 37.72 2.59
2988 3599 6.295067 GGCAAGTTAACAACATTAGGTTCCAT 60.295 38.462 8.61 0.00 37.72 3.41
3006 3617 1.686587 GGCTTGTTAACCTGGCAAGTT 59.313 47.619 6.72 6.72 40.99 2.66
3069 3680 5.095490 GCAAATACTGACACTATTGCAACC 58.905 41.667 0.00 0.00 0.00 3.77
3185 3891 7.787725 AGTAATACATCGAAAGGAAATGTCC 57.212 36.000 0.00 0.00 45.35 4.02
3226 3977 5.191124 ACAAATATTTAGGAACGGAGGGAGT 59.809 40.000 0.00 0.00 0.00 3.85
3227 3978 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
3228 3979 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
3229 3980 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
3230 3981 7.553044 AGAAAGACAAATATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
3231 3982 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
3232 3983 9.595823 CTAGAAAGACAAATATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
3233 3984 9.595823 TCTAGAAAGACAAATATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
3246 3997 9.573166 TCCATTTGAAATCTCTAGAAAGACAAA 57.427 29.630 0.00 4.41 0.00 2.83
3247 3998 9.003658 GTCCATTTGAAATCTCTAGAAAGACAA 57.996 33.333 0.00 0.00 0.00 3.18
3248 3999 8.378565 AGTCCATTTGAAATCTCTAGAAAGACA 58.621 33.333 0.00 0.00 0.00 3.41
3249 4000 8.785329 AGTCCATTTGAAATCTCTAGAAAGAC 57.215 34.615 0.00 0.00 0.00 3.01
3250 4001 9.877178 GTAGTCCATTTGAAATCTCTAGAAAGA 57.123 33.333 0.00 0.00 0.00 2.52
3251 4002 9.103861 GGTAGTCCATTTGAAATCTCTAGAAAG 57.896 37.037 0.00 0.00 0.00 2.62
3252 4003 8.602424 TGGTAGTCCATTTGAAATCTCTAGAAA 58.398 33.333 0.00 0.00 39.03 2.52
3253 4004 8.041323 GTGGTAGTCCATTTGAAATCTCTAGAA 58.959 37.037 0.00 0.00 46.20 2.10
3254 4005 7.180229 TGTGGTAGTCCATTTGAAATCTCTAGA 59.820 37.037 0.00 0.00 46.20 2.43
3255 4006 7.331026 TGTGGTAGTCCATTTGAAATCTCTAG 58.669 38.462 0.00 0.00 46.20 2.43
3256 4007 7.252612 TGTGGTAGTCCATTTGAAATCTCTA 57.747 36.000 0.00 0.00 46.20 2.43
3257 4008 6.126863 TGTGGTAGTCCATTTGAAATCTCT 57.873 37.500 0.00 0.00 46.20 3.10
3258 4009 7.552687 TGTATGTGGTAGTCCATTTGAAATCTC 59.447 37.037 0.00 0.00 46.20 2.75
3259 4010 7.402054 TGTATGTGGTAGTCCATTTGAAATCT 58.598 34.615 0.00 0.00 46.20 2.40
3260 4011 7.624360 TGTATGTGGTAGTCCATTTGAAATC 57.376 36.000 0.00 0.00 46.20 2.17
3261 4012 8.415950 TTTGTATGTGGTAGTCCATTTGAAAT 57.584 30.769 0.00 0.00 46.20 2.17
3262 4013 7.825331 TTTGTATGTGGTAGTCCATTTGAAA 57.175 32.000 0.00 0.00 46.20 2.69
3263 4014 7.450014 ACATTTGTATGTGGTAGTCCATTTGAA 59.550 33.333 0.00 0.00 46.20 2.69
3264 4015 6.945435 ACATTTGTATGTGGTAGTCCATTTGA 59.055 34.615 0.00 0.00 46.20 2.69
3265 4016 7.156876 ACATTTGTATGTGGTAGTCCATTTG 57.843 36.000 0.00 0.00 46.20 2.32
3308 4059 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
3309 4060 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
3310 4061 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
3311 4062 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
3312 4063 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
3313 4064 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
3314 4065 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
3315 4066 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
3316 4067 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
3317 4068 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
3318 4069 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
3319 4070 5.005779 GTGACTACATACGGAGCAAAATGAG 59.994 44.000 0.00 0.00 0.00 2.90
3320 4071 4.868171 GTGACTACATACGGAGCAAAATGA 59.132 41.667 0.00 0.00 0.00 2.57
3321 4072 4.870426 AGTGACTACATACGGAGCAAAATG 59.130 41.667 0.00 0.00 0.00 2.32
3322 4073 5.086104 AGTGACTACATACGGAGCAAAAT 57.914 39.130 0.00 0.00 0.00 1.82
3323 4074 4.530710 AGTGACTACATACGGAGCAAAA 57.469 40.909 0.00 0.00 0.00 2.44
3324 4075 4.242475 CAAGTGACTACATACGGAGCAAA 58.758 43.478 0.00 0.00 0.00 3.68
3325 4076 3.257375 ACAAGTGACTACATACGGAGCAA 59.743 43.478 0.00 0.00 0.00 3.91
3326 4077 2.823747 ACAAGTGACTACATACGGAGCA 59.176 45.455 0.00 0.00 0.00 4.26
3327 4078 3.505464 ACAAGTGACTACATACGGAGC 57.495 47.619 0.00 0.00 0.00 4.70
3328 4079 5.055642 TCAACAAGTGACTACATACGGAG 57.944 43.478 0.00 0.00 0.00 4.63
3329 4080 5.456548 TTCAACAAGTGACTACATACGGA 57.543 39.130 0.00 0.00 35.39 4.69
3330 4081 6.590292 AGATTTCAACAAGTGACTACATACGG 59.410 38.462 0.00 0.00 35.39 4.02
3331 4082 7.582435 AGATTTCAACAAGTGACTACATACG 57.418 36.000 0.00 0.00 35.39 3.06
3334 4085 9.778741 TCTAAAGATTTCAACAAGTGACTACAT 57.221 29.630 0.00 0.00 35.39 2.29
3335 4086 9.607988 TTCTAAAGATTTCAACAAGTGACTACA 57.392 29.630 0.00 0.00 35.39 2.74
3338 4089 9.396022 TCTTTCTAAAGATTTCAACAAGTGACT 57.604 29.630 1.00 0.00 39.95 3.41
3358 4109 9.780186 CCTCCGTTCCTAAATATTTATCTTTCT 57.220 33.333 8.34 0.00 0.00 2.52
3359 4110 9.000486 CCCTCCGTTCCTAAATATTTATCTTTC 58.000 37.037 8.34 0.00 0.00 2.62
3360 4111 8.720537 TCCCTCCGTTCCTAAATATTTATCTTT 58.279 33.333 8.34 0.00 0.00 2.52
3361 4112 8.271398 TCCCTCCGTTCCTAAATATTTATCTT 57.729 34.615 8.34 0.00 0.00 2.40
3362 4113 7.513091 ACTCCCTCCGTTCCTAAATATTTATCT 59.487 37.037 8.34 0.00 0.00 1.98
3363 4114 7.677892 ACTCCCTCCGTTCCTAAATATTTATC 58.322 38.462 8.34 0.61 0.00 1.75
3364 4115 7.628501 ACTCCCTCCGTTCCTAAATATTTAT 57.371 36.000 8.34 0.00 0.00 1.40
3365 4116 8.731591 ATACTCCCTCCGTTCCTAAATATTTA 57.268 34.615 7.66 7.66 0.00 1.40
3366 4117 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
3367 4118 8.912614 ATATACTCCCTCCGTTCCTAAATATT 57.087 34.615 0.00 0.00 0.00 1.28
3368 4119 8.912614 AATATACTCCCTCCGTTCCTAAATAT 57.087 34.615 0.00 0.00 0.00 1.28
3369 4120 9.247861 GTAATATACTCCCTCCGTTCCTAAATA 57.752 37.037 0.00 0.00 0.00 1.40
3370 4121 7.954620 AGTAATATACTCCCTCCGTTCCTAAAT 59.045 37.037 0.00 0.00 32.47 1.40
3371 4122 7.300658 AGTAATATACTCCCTCCGTTCCTAAA 58.699 38.462 0.00 0.00 32.47 1.85
3372 4123 6.856757 AGTAATATACTCCCTCCGTTCCTAA 58.143 40.000 0.00 0.00 32.47 2.69
3373 4124 6.460103 AGTAATATACTCCCTCCGTTCCTA 57.540 41.667 0.00 0.00 32.47 2.94
3374 4125 5.336491 AGTAATATACTCCCTCCGTTCCT 57.664 43.478 0.00 0.00 32.47 3.36
3581 4332 0.388907 TTCACCGCCGTGTAACTAGC 60.389 55.000 5.09 0.00 41.09 3.42
3886 4639 3.930848 GGGAGTAGGTAACAACACAATCG 59.069 47.826 0.00 0.00 41.41 3.34
3987 4742 1.779157 CGGATGTATACAGACGCGTTG 59.221 52.381 15.53 16.07 0.00 4.10
4327 5086 2.203750 ACATGCCAGCCCCCAAAA 59.796 55.556 0.00 0.00 0.00 2.44
4349 5108 8.811017 TGATTTTTATCTGTCAATTTTGGGCTA 58.189 29.630 0.00 0.00 0.00 3.93
4429 5188 8.847196 CATGATATTCCAGATAATTATGCAGGG 58.153 37.037 1.78 0.00 0.00 4.45
4702 5461 9.683069 AGACACATCAAAATGAAATTACAGTTC 57.317 29.630 0.00 0.00 33.67 3.01
4713 5472 8.620116 TCATAGAACAAGACACATCAAAATGA 57.380 30.769 0.00 0.00 36.67 2.57
4726 5485 6.475504 ACCATGTGATGTTCATAGAACAAGA 58.524 36.000 15.54 3.90 33.42 3.02
4815 5574 0.320771 GGCTTTGAGAAGACTGCCGA 60.321 55.000 0.00 0.00 37.94 5.54
4826 5585 9.252326 GCAGTTGCAAATATCAATGGCTTTGAG 62.252 40.741 18.92 8.07 43.29 3.02
4853 5612 8.675705 TTACAACTGAGAAGAATGTCATGAAA 57.324 30.769 0.00 0.00 0.00 2.69
4983 5742 3.319972 AGCAATCAACAAATGAGCACTGT 59.680 39.130 0.00 0.00 42.53 3.55
5141 5901 9.546428 AGTTTCTTAGCAAAATAGCAATGTTTT 57.454 25.926 0.00 0.00 36.85 2.43
5155 5915 5.883673 ACCACAACAGTAAGTTTCTTAGCAA 59.116 36.000 0.00 0.00 38.74 3.91
5164 5924 3.616219 TCAGCAACCACAACAGTAAGTT 58.384 40.909 0.00 0.00 42.42 2.66
5177 5937 3.572255 TGTGGGAGTTTAAATCAGCAACC 59.428 43.478 0.00 0.00 0.00 3.77
5199 5959 3.366052 ACACAAGTCCAGAAAACCTGT 57.634 42.857 0.00 0.00 41.33 4.00
5308 6068 5.748402 TGCAGTGGAAATCTATGAGATGTT 58.252 37.500 0.00 0.00 34.65 2.71
5366 6126 6.589907 CCTAATACTCAAATTGTTTGGTTGGC 59.410 38.462 2.92 0.00 40.98 4.52
5367 6127 6.589907 GCCTAATACTCAAATTGTTTGGTTGG 59.410 38.462 2.92 0.00 40.98 3.77
5369 6129 7.539034 AGCCTAATACTCAAATTGTTTGGTT 57.461 32.000 2.92 0.00 40.98 3.67
5371 6131 7.872483 ACAAAGCCTAATACTCAAATTGTTTGG 59.128 33.333 2.92 0.00 40.98 3.28
5436 6198 8.729805 AGAGAAATAAAAGCCTTCTACAGATG 57.270 34.615 0.00 0.00 29.59 2.90
5522 6284 7.039223 ACAAGGCTCAGATCAATCTTGAATTTT 60.039 33.333 15.84 0.00 41.13 1.82
5715 6477 1.529948 CGAGGATTGCATGGCCCAT 60.530 57.895 0.00 0.00 0.00 4.00
5847 6610 0.251341 AGAAGGATGCGGCAAAAGGT 60.251 50.000 6.82 0.00 0.00 3.50
5916 6679 3.197790 CAGGATCCACAAGGCGCG 61.198 66.667 15.82 0.00 33.74 6.86
5964 6727 4.181010 CGGAGCCATGTGAGGGGG 62.181 72.222 0.00 0.00 0.00 5.40
5987 6752 0.384669 GCAGGTACTCCGCGTAGAAT 59.615 55.000 5.42 0.00 34.60 2.40
6079 6844 1.888826 CGGGGAGTTTTATTGGGCACA 60.889 52.381 0.00 0.00 0.00 4.57
6080 6845 0.815095 CGGGGAGTTTTATTGGGCAC 59.185 55.000 0.00 0.00 0.00 5.01
6081 6846 0.699399 TCGGGGAGTTTTATTGGGCA 59.301 50.000 0.00 0.00 0.00 5.36
6236 7043 1.463674 CTTATTTTCCAGGCAGCCGT 58.536 50.000 5.55 0.00 0.00 5.68
6268 7075 4.357918 ACAGCAGAATGTAGTTGGAGTT 57.642 40.909 0.00 0.00 39.31 3.01
6269 7076 4.618460 CGTACAGCAGAATGTAGTTGGAGT 60.618 45.833 0.00 0.00 39.31 3.85
6270 7077 3.859961 CGTACAGCAGAATGTAGTTGGAG 59.140 47.826 0.00 0.00 39.31 3.86
6271 7078 3.257375 ACGTACAGCAGAATGTAGTTGGA 59.743 43.478 0.00 0.00 39.31 3.53
6272 7079 3.585862 ACGTACAGCAGAATGTAGTTGG 58.414 45.455 0.00 0.00 39.31 3.77
6276 7083 7.328737 AGTTCTAAAACGTACAGCAGAATGTAG 59.671 37.037 0.00 0.00 40.48 2.74
6286 7093 9.498307 AAAATTCACAAGTTCTAAAACGTACAG 57.502 29.630 0.00 0.00 40.48 2.74
6321 7129 4.330944 ACATCCTAGACAACAACAACGA 57.669 40.909 0.00 0.00 0.00 3.85
6323 7131 5.298276 TCCAAACATCCTAGACAACAACAAC 59.702 40.000 0.00 0.00 0.00 3.32
6324 7132 5.441500 TCCAAACATCCTAGACAACAACAA 58.558 37.500 0.00 0.00 0.00 2.83
6325 7133 5.042463 TCCAAACATCCTAGACAACAACA 57.958 39.130 0.00 0.00 0.00 3.33
6358 7166 8.515414 CCTCCTGGTAAGATTTAAGAAAGTTTG 58.485 37.037 0.00 0.00 0.00 2.93
6359 7167 7.670140 CCCTCCTGGTAAGATTTAAGAAAGTTT 59.330 37.037 0.00 0.00 0.00 2.66
6360 7168 7.175797 CCCTCCTGGTAAGATTTAAGAAAGTT 58.824 38.462 0.00 0.00 0.00 2.66
6379 7187 0.486879 TGCCAATTTTCACCCCTCCT 59.513 50.000 0.00 0.00 0.00 3.69
6391 7199 4.451891 AAAGGGACCAATTTTGCCAATT 57.548 36.364 0.00 0.00 0.00 2.32
6392 7200 4.451891 AAAAGGGACCAATTTTGCCAAT 57.548 36.364 5.99 0.00 0.00 3.16
6414 7222 5.843019 TTAGAGGAGGGTTCAAACTTCAT 57.157 39.130 0.00 0.00 0.00 2.57
6423 7231 7.148222 GCTTGTTAAGATTTTAGAGGAGGGTTC 60.148 40.741 0.00 0.00 0.00 3.62
6449 7257 7.421599 TGTGTTGTACAGAATGGTTATGTTTG 58.578 34.615 0.00 0.00 43.62 2.93
6450 7258 7.575414 TGTGTTGTACAGAATGGTTATGTTT 57.425 32.000 0.00 0.00 43.62 2.83
6453 7261 6.206634 ACCTTGTGTTGTACAGAATGGTTATG 59.793 38.462 0.00 0.00 43.62 1.90
6458 7266 6.655003 AGATAACCTTGTGTTGTACAGAATGG 59.345 38.462 0.00 0.00 41.10 3.16
6485 7298 0.937304 TTGACTGTCAAGTTCAGCGC 59.063 50.000 18.69 0.00 36.52 5.92
6499 7312 2.688958 GAGTAGGCCATAGACGTTGACT 59.311 50.000 5.01 0.00 0.00 3.41
6545 8195 0.261696 ACCCACTTTGCAAGGAGGTT 59.738 50.000 20.67 6.76 35.29 3.50
6546 8196 0.261696 AACCCACTTTGCAAGGAGGT 59.738 50.000 20.67 19.16 39.02 3.85
6606 8299 7.322938 GGTAAATTGCAGAAGAAGTTTCGTTAC 59.677 37.037 0.00 0.00 0.00 2.50
6613 8306 6.959639 TTCAGGTAAATTGCAGAAGAAGTT 57.040 33.333 0.00 0.00 0.00 2.66
6624 8317 7.452880 TCTCTGGTTCATTTCAGGTAAATTG 57.547 36.000 0.00 0.00 35.54 2.32
6631 8324 6.579666 TCATTTTCTCTGGTTCATTTCAGG 57.420 37.500 0.00 0.00 0.00 3.86
6639 8333 8.518702 AGAGCTTATTTTCATTTTCTCTGGTTC 58.481 33.333 0.00 0.00 0.00 3.62
6707 8420 9.071221 CGTAAAACTGGTACGTACATAACATTA 57.929 33.333 26.02 14.25 39.54 1.90
6708 8421 7.952339 CGTAAAACTGGTACGTACATAACATT 58.048 34.615 26.02 15.12 39.54 2.71
6710 8423 6.926280 CGTAAAACTGGTACGTACATAACA 57.074 37.500 26.02 13.96 39.54 2.41
6793 8506 3.876309 AACCTTAGCCTGTCCTTTTCA 57.124 42.857 0.00 0.00 0.00 2.69
6799 8512 2.710096 TGCATAACCTTAGCCTGTCC 57.290 50.000 0.00 0.00 0.00 4.02
6802 8515 5.051891 GCATAATGCATAACCTTAGCCTG 57.948 43.478 0.00 0.00 44.26 4.85
6869 8591 1.521616 GCTTGAGGCAGGAGGAGAG 59.478 63.158 0.00 0.00 41.35 3.20
6967 8702 6.164176 ACACTTACCTCTGTTGTAAGCATAC 58.836 40.000 14.50 0.00 45.79 2.39
6981 8722 5.527582 ACATTGTTTGACAGACACTTACCTC 59.472 40.000 0.00 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.