Multiple sequence alignment - TraesCS7A01G495300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G495300 chr7A 100.000 2744 0 0 1 2744 685577791 685580534 0.000000e+00 5068.0
1 TraesCS7A01G495300 chr7A 97.115 2392 46 4 262 2651 685515766 685518136 0.000000e+00 4013.0
2 TraesCS7A01G495300 chr7A 91.954 174 11 2 2419 2589 671782745 671782572 9.820000e-60 241.0
3 TraesCS7A01G495300 chr7B 89.284 1997 135 31 278 2216 668216192 668214217 0.000000e+00 2429.0
4 TraesCS7A01G495300 chr7B 90.164 122 10 2 263 384 668216307 668216188 1.020000e-34 158.0
5 TraesCS7A01G495300 chr7D 94.830 735 32 1 966 1700 593030429 593031157 0.000000e+00 1142.0
6 TraesCS7A01G495300 chr7D 91.473 129 11 0 966 1094 593029749 593029877 7.810000e-41 178.0
7 TraesCS7A01G495300 chr7D 95.098 102 5 0 2643 2744 403812163 403812062 7.860000e-36 161.0
8 TraesCS7A01G495300 chr7D 95.098 102 5 0 2643 2744 411614059 411614160 7.860000e-36 161.0
9 TraesCS7A01G495300 chr7D 91.262 103 3 1 2120 2216 593031156 593031258 4.770000e-28 135.0
10 TraesCS7A01G495300 chr3B 100.000 262 0 0 1 262 816644911 816644650 4.110000e-133 484.0
11 TraesCS7A01G495300 chr3A 100.000 262 0 0 1 262 653937761 653937500 4.110000e-133 484.0
12 TraesCS7A01G495300 chr3A 95.146 103 5 0 2642 2744 365363076 365363178 2.190000e-36 163.0
13 TraesCS7A01G495300 chrUn 99.621 264 1 0 1 264 421953038 421952775 1.480000e-132 483.0
14 TraesCS7A01G495300 chr6A 100.000 261 0 0 1 261 529876869 529877129 1.480000e-132 483.0
15 TraesCS7A01G495300 chr6A 96.552 290 4 5 1 287 46008239 46008525 2.470000e-130 475.0
16 TraesCS7A01G495300 chr4B 100.000 261 0 0 1 261 130899834 130900094 1.480000e-132 483.0
17 TraesCS7A01G495300 chr1B 100.000 261 0 0 1 261 166622874 166623134 1.480000e-132 483.0
18 TraesCS7A01G495300 chr1A 100.000 261 0 0 1 261 39658920 39659180 1.480000e-132 483.0
19 TraesCS7A01G495300 chr1A 99.621 264 1 0 1 264 561643468 561643205 1.480000e-132 483.0
20 TraesCS7A01G495300 chr2A 77.106 546 95 15 296 838 735751742 735752260 3.460000e-74 289.0
21 TraesCS7A01G495300 chr2A 93.458 107 7 0 2638 2744 30873521 30873415 2.830000e-35 159.0
22 TraesCS7A01G495300 chr6D 95.370 108 5 0 2637 2744 62116267 62116160 3.630000e-39 172.0
23 TraesCS7A01G495300 chr6D 93.519 108 7 0 2637 2744 2065517 2065624 7.860000e-36 161.0
24 TraesCS7A01G495300 chr3D 97.059 102 3 0 2643 2744 339862161 339862262 3.630000e-39 172.0
25 TraesCS7A01G495300 chr5B 95.098 102 5 0 2643 2744 586399601 586399702 7.860000e-36 161.0
26 TraesCS7A01G495300 chr2D 95.098 102 5 0 2643 2744 376857622 376857723 7.860000e-36 161.0
27 TraesCS7A01G495300 chr5A 74.926 339 73 11 297 632 522069265 522068936 7.920000e-31 145.0
28 TraesCS7A01G495300 chr5D 100.000 36 0 0 777 812 356689210 356689175 1.760000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G495300 chr7A 685577791 685580534 2743 False 5068.0 5068 100.000000 1 2744 1 chr7A.!!$F2 2743
1 TraesCS7A01G495300 chr7A 685515766 685518136 2370 False 4013.0 4013 97.115000 262 2651 1 chr7A.!!$F1 2389
2 TraesCS7A01G495300 chr7B 668214217 668216307 2090 True 1293.5 2429 89.724000 263 2216 2 chr7B.!!$R1 1953
3 TraesCS7A01G495300 chr7D 593029749 593031258 1509 False 485.0 1142 92.521667 966 2216 3 chr7D.!!$F2 1250
4 TraesCS7A01G495300 chr2A 735751742 735752260 518 False 289.0 289 77.106000 296 838 1 chr2A.!!$F1 542

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
112 113 2.017782 CGAGCTAGTCAAGTAGAGGCA 58.982 52.381 0.00 0.0 0.00 4.75 F
998 1130 2.614013 AAATCCCTCCGGGCCAGT 60.614 61.111 4.39 0.0 43.94 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1341 2147 1.672854 CCCTCGTCATTAGGCCGACA 61.673 60.0 8.9 0.0 32.34 4.35 R
2115 2942 0.110056 GCAAGATGTGAACTGCGGTG 60.110 55.0 0.0 0.0 0.00 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 5.996513 AGATCATTCTGCTAATGATGTGACC 59.003 40.000 23.82 13.66 44.74 4.02
33 34 5.363562 TCATTCTGCTAATGATGTGACCT 57.636 39.130 9.99 0.00 32.21 3.85
34 35 5.363101 TCATTCTGCTAATGATGTGACCTC 58.637 41.667 9.99 0.00 32.21 3.85
35 36 3.443099 TCTGCTAATGATGTGACCTCG 57.557 47.619 0.00 0.00 0.00 4.63
36 37 2.760650 TCTGCTAATGATGTGACCTCGT 59.239 45.455 0.00 0.00 0.00 4.18
37 38 3.195610 TCTGCTAATGATGTGACCTCGTT 59.804 43.478 1.18 1.18 0.00 3.85
38 39 4.401202 TCTGCTAATGATGTGACCTCGTTA 59.599 41.667 3.19 3.19 0.00 3.18
39 40 5.079689 TGCTAATGATGTGACCTCGTTAA 57.920 39.130 4.52 0.00 0.00 2.01
40 41 5.670485 TGCTAATGATGTGACCTCGTTAAT 58.330 37.500 4.52 0.00 0.00 1.40
41 42 5.753438 TGCTAATGATGTGACCTCGTTAATC 59.247 40.000 4.52 1.48 0.00 1.75
42 43 5.753438 GCTAATGATGTGACCTCGTTAATCA 59.247 40.000 4.52 0.00 0.00 2.57
43 44 6.257849 GCTAATGATGTGACCTCGTTAATCAA 59.742 38.462 4.52 0.00 0.00 2.57
44 45 7.201609 GCTAATGATGTGACCTCGTTAATCAAA 60.202 37.037 4.52 0.00 0.00 2.69
45 46 7.630242 AATGATGTGACCTCGTTAATCAAAT 57.370 32.000 0.00 0.00 0.00 2.32
46 47 8.731275 AATGATGTGACCTCGTTAATCAAATA 57.269 30.769 0.00 0.00 0.00 1.40
47 48 8.731275 ATGATGTGACCTCGTTAATCAAATAA 57.269 30.769 0.00 0.00 0.00 1.40
48 49 7.970384 TGATGTGACCTCGTTAATCAAATAAC 58.030 34.615 0.00 0.00 33.40 1.89
49 50 7.604545 TGATGTGACCTCGTTAATCAAATAACA 59.395 33.333 0.00 0.00 35.89 2.41
50 51 7.731882 TGTGACCTCGTTAATCAAATAACAA 57.268 32.000 0.00 0.00 35.89 2.83
51 52 7.577979 TGTGACCTCGTTAATCAAATAACAAC 58.422 34.615 0.00 0.00 35.89 3.32
52 53 7.442969 TGTGACCTCGTTAATCAAATAACAACT 59.557 33.333 0.00 0.00 35.89 3.16
53 54 7.955864 GTGACCTCGTTAATCAAATAACAACTC 59.044 37.037 0.00 0.00 35.89 3.01
54 55 7.658167 TGACCTCGTTAATCAAATAACAACTCA 59.342 33.333 0.00 0.00 35.89 3.41
55 56 8.561738 ACCTCGTTAATCAAATAACAACTCAT 57.438 30.769 0.00 0.00 35.89 2.90
56 57 9.010029 ACCTCGTTAATCAAATAACAACTCATT 57.990 29.630 0.00 0.00 35.89 2.57
57 58 9.277565 CCTCGTTAATCAAATAACAACTCATTG 57.722 33.333 0.00 0.00 41.98 2.82
71 72 6.573664 CAACTCATTGTTCATGGTTAGGAA 57.426 37.500 0.00 0.00 36.63 3.36
72 73 6.980593 CAACTCATTGTTCATGGTTAGGAAA 58.019 36.000 0.00 0.00 36.63 3.13
73 74 6.575162 ACTCATTGTTCATGGTTAGGAAAC 57.425 37.500 0.00 0.00 33.07 2.78
74 75 6.068010 ACTCATTGTTCATGGTTAGGAAACA 58.932 36.000 0.00 0.00 37.34 2.83
75 76 6.721208 ACTCATTGTTCATGGTTAGGAAACAT 59.279 34.615 0.00 0.00 37.34 2.71
76 77 7.888021 ACTCATTGTTCATGGTTAGGAAACATA 59.112 33.333 0.00 0.00 37.34 2.29
77 78 8.642935 TCATTGTTCATGGTTAGGAAACATAA 57.357 30.769 0.00 0.00 37.34 1.90
78 79 8.519526 TCATTGTTCATGGTTAGGAAACATAAC 58.480 33.333 0.00 0.00 37.34 1.89
93 94 8.458843 AGGAAACATAACCATCTTTGATTAACG 58.541 33.333 0.00 0.00 0.00 3.18
94 95 8.455682 GGAAACATAACCATCTTTGATTAACGA 58.544 33.333 0.00 0.00 0.00 3.85
95 96 9.490663 GAAACATAACCATCTTTGATTAACGAG 57.509 33.333 0.00 0.00 0.00 4.18
96 97 7.016361 ACATAACCATCTTTGATTAACGAGC 57.984 36.000 0.00 0.00 0.00 5.03
97 98 6.823689 ACATAACCATCTTTGATTAACGAGCT 59.176 34.615 0.00 0.00 0.00 4.09
98 99 7.985184 ACATAACCATCTTTGATTAACGAGCTA 59.015 33.333 0.00 0.00 0.00 3.32
99 100 6.910536 AACCATCTTTGATTAACGAGCTAG 57.089 37.500 0.00 0.00 0.00 3.42
100 101 5.978814 ACCATCTTTGATTAACGAGCTAGT 58.021 37.500 0.00 0.00 0.00 2.57
101 102 6.043411 ACCATCTTTGATTAACGAGCTAGTC 58.957 40.000 0.00 0.00 0.00 2.59
102 103 6.042777 CCATCTTTGATTAACGAGCTAGTCA 58.957 40.000 0.00 0.00 0.00 3.41
103 104 6.535150 CCATCTTTGATTAACGAGCTAGTCAA 59.465 38.462 0.00 0.00 0.00 3.18
104 105 7.254252 CCATCTTTGATTAACGAGCTAGTCAAG 60.254 40.741 0.00 0.00 31.56 3.02
105 106 6.688578 TCTTTGATTAACGAGCTAGTCAAGT 58.311 36.000 0.00 0.00 31.56 3.16
106 107 7.823665 TCTTTGATTAACGAGCTAGTCAAGTA 58.176 34.615 0.00 0.00 31.56 2.24
107 108 7.968956 TCTTTGATTAACGAGCTAGTCAAGTAG 59.031 37.037 0.00 0.00 31.56 2.57
108 109 6.997239 TGATTAACGAGCTAGTCAAGTAGA 57.003 37.500 0.00 0.00 0.00 2.59
109 110 7.017498 TGATTAACGAGCTAGTCAAGTAGAG 57.983 40.000 0.00 0.00 0.00 2.43
110 111 5.814764 TTAACGAGCTAGTCAAGTAGAGG 57.185 43.478 0.00 0.00 0.00 3.69
111 112 2.018515 ACGAGCTAGTCAAGTAGAGGC 58.981 52.381 0.00 0.00 0.00 4.70
112 113 2.017782 CGAGCTAGTCAAGTAGAGGCA 58.982 52.381 0.00 0.00 0.00 4.75
113 114 2.621055 CGAGCTAGTCAAGTAGAGGCAT 59.379 50.000 0.00 0.00 0.00 4.40
114 115 3.815962 CGAGCTAGTCAAGTAGAGGCATA 59.184 47.826 0.00 0.00 0.00 3.14
115 116 4.319911 CGAGCTAGTCAAGTAGAGGCATAC 60.320 50.000 0.00 0.00 0.00 2.39
116 117 4.798882 AGCTAGTCAAGTAGAGGCATACT 58.201 43.478 0.00 0.00 37.61 2.12
117 118 5.942961 AGCTAGTCAAGTAGAGGCATACTA 58.057 41.667 3.23 0.00 34.90 1.82
118 119 6.001460 AGCTAGTCAAGTAGAGGCATACTAG 58.999 44.000 0.00 0.00 38.50 2.57
119 120 5.766174 GCTAGTCAAGTAGAGGCATACTAGT 59.234 44.000 0.00 0.00 38.02 2.57
120 121 6.293735 GCTAGTCAAGTAGAGGCATACTAGTG 60.294 46.154 5.39 0.00 38.02 2.74
121 122 5.756918 AGTCAAGTAGAGGCATACTAGTGA 58.243 41.667 5.39 2.59 34.90 3.41
122 123 5.591067 AGTCAAGTAGAGGCATACTAGTGAC 59.409 44.000 17.97 17.97 40.57 3.67
123 124 5.357314 GTCAAGTAGAGGCATACTAGTGACA 59.643 44.000 19.41 0.00 40.28 3.58
124 125 5.357314 TCAAGTAGAGGCATACTAGTGACAC 59.643 44.000 5.39 0.00 34.90 3.67
125 126 5.118729 AGTAGAGGCATACTAGTGACACT 57.881 43.478 13.68 13.68 34.21 3.55
126 127 5.511363 AGTAGAGGCATACTAGTGACACTT 58.489 41.667 14.50 0.00 34.21 3.16
127 128 5.952947 AGTAGAGGCATACTAGTGACACTTT 59.047 40.000 14.50 4.04 34.21 2.66
128 129 5.078411 AGAGGCATACTAGTGACACTTTG 57.922 43.478 14.50 9.81 0.00 2.77
129 130 4.528596 AGAGGCATACTAGTGACACTTTGT 59.471 41.667 14.50 14.92 0.00 2.83
130 131 5.012148 AGAGGCATACTAGTGACACTTTGTT 59.988 40.000 14.50 0.00 0.00 2.83
131 132 5.621193 AGGCATACTAGTGACACTTTGTTT 58.379 37.500 14.50 6.06 0.00 2.83
132 133 5.470098 AGGCATACTAGTGACACTTTGTTTG 59.530 40.000 14.50 17.08 0.00 2.93
133 134 5.238650 GGCATACTAGTGACACTTTGTTTGT 59.761 40.000 14.50 6.39 0.00 2.83
134 135 6.363473 GCATACTAGTGACACTTTGTTTGTC 58.637 40.000 14.50 10.38 43.22 3.18
135 136 6.202954 GCATACTAGTGACACTTTGTTTGTCT 59.797 38.462 14.50 0.00 43.30 3.41
136 137 7.384115 GCATACTAGTGACACTTTGTTTGTCTA 59.616 37.037 14.50 0.00 43.30 2.59
137 138 9.424319 CATACTAGTGACACTTTGTTTGTCTAT 57.576 33.333 14.50 0.80 43.30 1.98
138 139 7.715265 ACTAGTGACACTTTGTTTGTCTATG 57.285 36.000 14.50 0.00 43.30 2.23
139 140 7.272978 ACTAGTGACACTTTGTTTGTCTATGT 58.727 34.615 14.50 0.00 43.30 2.29
140 141 8.418662 ACTAGTGACACTTTGTTTGTCTATGTA 58.581 33.333 14.50 0.00 43.30 2.29
141 142 9.424319 CTAGTGACACTTTGTTTGTCTATGTAT 57.576 33.333 14.50 0.00 43.30 2.29
142 143 8.677148 AGTGACACTTTGTTTGTCTATGTATT 57.323 30.769 1.07 0.00 43.30 1.89
143 144 8.774586 AGTGACACTTTGTTTGTCTATGTATTC 58.225 33.333 1.07 0.00 43.30 1.75
144 145 8.556194 GTGACACTTTGTTTGTCTATGTATTCA 58.444 33.333 0.00 0.00 43.30 2.57
145 146 8.556194 TGACACTTTGTTTGTCTATGTATTCAC 58.444 33.333 4.27 0.00 43.30 3.18
146 147 8.445275 ACACTTTGTTTGTCTATGTATTCACA 57.555 30.769 0.00 0.00 39.52 3.58
147 148 8.342634 ACACTTTGTTTGTCTATGTATTCACAC 58.657 33.333 0.00 0.00 37.54 3.82
148 149 8.341903 CACTTTGTTTGTCTATGTATTCACACA 58.658 33.333 0.00 0.00 37.54 3.72
149 150 8.342634 ACTTTGTTTGTCTATGTATTCACACAC 58.657 33.333 0.00 0.00 37.54 3.82
150 151 7.793927 TTGTTTGTCTATGTATTCACACACA 57.206 32.000 0.00 0.00 37.54 3.72
151 152 7.977789 TGTTTGTCTATGTATTCACACACAT 57.022 32.000 0.00 0.00 37.54 3.21
152 153 7.805700 TGTTTGTCTATGTATTCACACACATG 58.194 34.615 0.00 0.00 37.54 3.21
153 154 7.443879 TGTTTGTCTATGTATTCACACACATGT 59.556 33.333 0.00 0.00 40.80 3.21
154 155 8.931775 GTTTGTCTATGTATTCACACACATGTA 58.068 33.333 0.00 0.00 36.72 2.29
155 156 9.665719 TTTGTCTATGTATTCACACACATGTAT 57.334 29.630 0.00 0.00 36.72 2.29
156 157 9.665719 TTGTCTATGTATTCACACACATGTATT 57.334 29.630 0.00 0.00 36.72 1.89
164 165 9.716507 GTATTCACACACATGTATTATGTTTCC 57.283 33.333 0.00 0.00 36.72 3.13
165 166 6.415798 TCACACACATGTATTATGTTTCCG 57.584 37.500 0.00 0.00 36.72 4.30
166 167 5.352846 TCACACACATGTATTATGTTTCCGG 59.647 40.000 0.00 0.00 36.72 5.14
167 168 5.123186 CACACACATGTATTATGTTTCCGGT 59.877 40.000 0.00 0.00 36.72 5.28
168 169 6.314152 CACACACATGTATTATGTTTCCGGTA 59.686 38.462 0.00 0.00 36.72 4.02
169 170 6.879993 ACACACATGTATTATGTTTCCGGTAA 59.120 34.615 0.00 0.00 37.26 2.85
170 171 7.390996 ACACACATGTATTATGTTTCCGGTAAA 59.609 33.333 0.00 0.00 37.26 2.01
171 172 8.402472 CACACATGTATTATGTTTCCGGTAAAT 58.598 33.333 0.00 0.00 0.00 1.40
172 173 9.616156 ACACATGTATTATGTTTCCGGTAAATA 57.384 29.630 0.00 0.00 0.00 1.40
173 174 9.872757 CACATGTATTATGTTTCCGGTAAATAC 57.127 33.333 0.00 3.99 32.83 1.89
174 175 9.616156 ACATGTATTATGTTTCCGGTAAATACA 57.384 29.630 14.59 14.59 41.43 2.29
182 183 7.311364 TGTTTCCGGTAAATACAATTCTAGC 57.689 36.000 0.00 0.00 0.00 3.42
183 184 6.879993 TGTTTCCGGTAAATACAATTCTAGCA 59.120 34.615 0.00 0.00 0.00 3.49
184 185 7.554835 TGTTTCCGGTAAATACAATTCTAGCAT 59.445 33.333 0.00 0.00 0.00 3.79
185 186 7.490962 TTCCGGTAAATACAATTCTAGCATG 57.509 36.000 0.00 0.00 0.00 4.06
186 187 6.822442 TCCGGTAAATACAATTCTAGCATGA 58.178 36.000 0.00 0.00 0.00 3.07
187 188 7.276658 TCCGGTAAATACAATTCTAGCATGAA 58.723 34.615 0.00 0.00 0.00 2.57
188 189 7.936847 TCCGGTAAATACAATTCTAGCATGAAT 59.063 33.333 0.00 0.00 38.19 2.57
189 190 9.214957 CCGGTAAATACAATTCTAGCATGAATA 57.785 33.333 0.00 0.00 35.82 1.75
248 249 8.637196 AATAACTTTATTATTGCCTCTAGGGC 57.363 34.615 13.60 13.60 44.71 5.19
260 261 4.982241 CCTCTAGGGCATATTTCCTTCA 57.018 45.455 0.00 0.00 34.75 3.02
879 986 4.267452 CGACCAAAATTTATGCCCGAAATG 59.733 41.667 0.00 0.00 0.00 2.32
902 1009 7.328277 TGGGTCAAGACGGATAATAATTTTG 57.672 36.000 0.00 0.00 0.00 2.44
908 1040 9.627123 TCAAGACGGATAATAATTTTGAGGAAT 57.373 29.630 0.00 0.00 0.00 3.01
998 1130 2.614013 AAATCCCTCCGGGCCAGT 60.614 61.111 4.39 0.00 43.94 4.00
1334 2140 3.781307 CCCCATGGGCTTCGACGA 61.781 66.667 26.87 0.00 35.35 4.20
1341 2147 2.813908 GGCTTCGACGACGCCAAT 60.814 61.111 33.18 0.00 44.81 3.16
2015 2822 1.080093 CGTGCGCTCTTCCCACTTA 60.080 57.895 9.73 0.00 0.00 2.24
2516 3349 2.222027 CCCTATCCTCGCACATTTTCC 58.778 52.381 0.00 0.00 0.00 3.13
2519 3352 1.098050 ATCCTCGCACATTTTCCTGC 58.902 50.000 0.00 0.00 0.00 4.85
2526 3359 2.412770 CGCACATTTTCCTGCATTTTCC 59.587 45.455 0.00 0.00 32.57 3.13
2552 3385 3.000041 CGTGTTGCTGCAGGTAATAGAA 59.000 45.455 17.12 0.00 0.00 2.10
2651 3484 0.537653 GGCTGACACCTACTTCCTCC 59.462 60.000 0.00 0.00 0.00 4.30
2652 3485 0.173708 GCTGACACCTACTTCCTCCG 59.826 60.000 0.00 0.00 0.00 4.63
2653 3486 1.546961 CTGACACCTACTTCCTCCGT 58.453 55.000 0.00 0.00 0.00 4.69
2654 3487 1.893801 CTGACACCTACTTCCTCCGTT 59.106 52.381 0.00 0.00 0.00 4.44
2655 3488 1.891150 TGACACCTACTTCCTCCGTTC 59.109 52.381 0.00 0.00 0.00 3.95
2656 3489 1.204231 GACACCTACTTCCTCCGTTCC 59.796 57.143 0.00 0.00 0.00 3.62
2657 3490 1.263356 CACCTACTTCCTCCGTTCCA 58.737 55.000 0.00 0.00 0.00 3.53
2658 3491 1.621814 CACCTACTTCCTCCGTTCCAA 59.378 52.381 0.00 0.00 0.00 3.53
2659 3492 2.038033 CACCTACTTCCTCCGTTCCAAA 59.962 50.000 0.00 0.00 0.00 3.28
2660 3493 2.910977 ACCTACTTCCTCCGTTCCAAAT 59.089 45.455 0.00 0.00 0.00 2.32
2661 3494 3.329814 ACCTACTTCCTCCGTTCCAAATT 59.670 43.478 0.00 0.00 0.00 1.82
2662 3495 4.533311 ACCTACTTCCTCCGTTCCAAATTA 59.467 41.667 0.00 0.00 0.00 1.40
2663 3496 4.874396 CCTACTTCCTCCGTTCCAAATTAC 59.126 45.833 0.00 0.00 0.00 1.89
2664 3497 4.635699 ACTTCCTCCGTTCCAAATTACT 57.364 40.909 0.00 0.00 0.00 2.24
2665 3498 4.981812 ACTTCCTCCGTTCCAAATTACTT 58.018 39.130 0.00 0.00 0.00 2.24
2666 3499 4.760204 ACTTCCTCCGTTCCAAATTACTTG 59.240 41.667 0.00 0.00 34.52 3.16
2667 3500 4.627284 TCCTCCGTTCCAAATTACTTGA 57.373 40.909 0.00 0.00 37.17 3.02
2668 3501 4.320870 TCCTCCGTTCCAAATTACTTGAC 58.679 43.478 0.00 0.00 37.17 3.18
2669 3502 3.439129 CCTCCGTTCCAAATTACTTGACC 59.561 47.826 0.00 0.00 37.17 4.02
2670 3503 3.414269 TCCGTTCCAAATTACTTGACCC 58.586 45.455 0.00 0.00 37.17 4.46
2671 3504 3.150767 CCGTTCCAAATTACTTGACCCA 58.849 45.455 0.00 0.00 37.17 4.51
2672 3505 3.761752 CCGTTCCAAATTACTTGACCCAT 59.238 43.478 0.00 0.00 37.17 4.00
2673 3506 4.944930 CCGTTCCAAATTACTTGACCCATA 59.055 41.667 0.00 0.00 37.17 2.74
2674 3507 5.592688 CCGTTCCAAATTACTTGACCCATAT 59.407 40.000 0.00 0.00 37.17 1.78
2675 3508 6.096282 CCGTTCCAAATTACTTGACCCATATT 59.904 38.462 0.00 0.00 37.17 1.28
2676 3509 7.363443 CCGTTCCAAATTACTTGACCCATATTT 60.363 37.037 0.00 0.00 37.17 1.40
2677 3510 8.679100 CGTTCCAAATTACTTGACCCATATTTA 58.321 33.333 0.00 0.00 37.17 1.40
2687 3520 7.434492 ACTTGACCCATATTTATCTAGACACG 58.566 38.462 0.00 0.00 0.00 4.49
2688 3521 7.287005 ACTTGACCCATATTTATCTAGACACGA 59.713 37.037 0.00 0.00 0.00 4.35
2689 3522 7.591421 TGACCCATATTTATCTAGACACGAA 57.409 36.000 0.00 0.00 0.00 3.85
2690 3523 8.190326 TGACCCATATTTATCTAGACACGAAT 57.810 34.615 0.00 0.00 0.00 3.34
2691 3524 8.088365 TGACCCATATTTATCTAGACACGAATG 58.912 37.037 0.00 0.00 0.00 2.67
2692 3525 7.963532 ACCCATATTTATCTAGACACGAATGT 58.036 34.615 0.00 0.00 43.71 2.71
2693 3526 9.085645 ACCCATATTTATCTAGACACGAATGTA 57.914 33.333 0.00 0.00 39.95 2.29
2743 3576 8.561738 ACATCCGTATTTAGACAAATTCAAGT 57.438 30.769 0.00 0.00 35.88 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 5.996513 GGTCACATCATTAGCAGAATGATCT 59.003 40.000 18.86 9.17 43.38 2.75
9 10 5.996513 AGGTCACATCATTAGCAGAATGATC 59.003 40.000 18.86 10.91 43.38 2.92
10 11 5.938279 AGGTCACATCATTAGCAGAATGAT 58.062 37.500 16.92 16.92 45.40 2.45
11 12 5.363101 GAGGTCACATCATTAGCAGAATGA 58.637 41.667 14.32 14.32 39.69 2.57
12 13 4.210746 CGAGGTCACATCATTAGCAGAATG 59.789 45.833 5.26 5.26 40.87 2.67
13 14 4.141846 ACGAGGTCACATCATTAGCAGAAT 60.142 41.667 0.00 0.00 0.00 2.40
14 15 3.195610 ACGAGGTCACATCATTAGCAGAA 59.804 43.478 0.00 0.00 0.00 3.02
15 16 2.760650 ACGAGGTCACATCATTAGCAGA 59.239 45.455 0.00 0.00 0.00 4.26
16 17 3.170791 ACGAGGTCACATCATTAGCAG 57.829 47.619 0.00 0.00 0.00 4.24
17 18 3.610040 AACGAGGTCACATCATTAGCA 57.390 42.857 0.00 0.00 0.00 3.49
18 19 5.753438 TGATTAACGAGGTCACATCATTAGC 59.247 40.000 0.00 0.00 0.00 3.09
19 20 7.770801 TTGATTAACGAGGTCACATCATTAG 57.229 36.000 0.00 0.00 0.00 1.73
20 21 8.731275 ATTTGATTAACGAGGTCACATCATTA 57.269 30.769 0.00 0.00 0.00 1.90
21 22 7.630242 ATTTGATTAACGAGGTCACATCATT 57.370 32.000 0.00 0.00 0.00 2.57
22 23 8.612619 GTTATTTGATTAACGAGGTCACATCAT 58.387 33.333 0.00 0.00 0.00 2.45
23 24 7.604545 TGTTATTTGATTAACGAGGTCACATCA 59.395 33.333 0.00 0.00 35.30 3.07
24 25 7.970384 TGTTATTTGATTAACGAGGTCACATC 58.030 34.615 0.00 0.00 35.30 3.06
25 26 7.915293 TGTTATTTGATTAACGAGGTCACAT 57.085 32.000 0.00 0.00 35.30 3.21
26 27 7.442969 AGTTGTTATTTGATTAACGAGGTCACA 59.557 33.333 0.00 0.00 35.30 3.58
27 28 7.803724 AGTTGTTATTTGATTAACGAGGTCAC 58.196 34.615 0.00 0.00 35.30 3.67
28 29 7.658167 TGAGTTGTTATTTGATTAACGAGGTCA 59.342 33.333 0.00 0.00 35.30 4.02
29 30 8.025243 TGAGTTGTTATTTGATTAACGAGGTC 57.975 34.615 0.00 0.00 35.30 3.85
30 31 7.972832 TGAGTTGTTATTTGATTAACGAGGT 57.027 32.000 0.00 0.00 35.30 3.85
31 32 9.277565 CAATGAGTTGTTATTTGATTAACGAGG 57.722 33.333 0.00 0.00 35.30 4.63
32 33 9.825972 ACAATGAGTTGTTATTTGATTAACGAG 57.174 29.630 0.00 0.00 46.07 4.18
48 49 6.573664 TTCCTAACCATGAACAATGAGTTG 57.426 37.500 0.00 0.00 41.51 3.16
49 50 6.549364 TGTTTCCTAACCATGAACAATGAGTT 59.451 34.615 0.00 0.00 36.96 3.01
50 51 6.068010 TGTTTCCTAACCATGAACAATGAGT 58.932 36.000 0.00 0.00 36.21 3.41
51 52 6.573664 TGTTTCCTAACCATGAACAATGAG 57.426 37.500 0.00 0.00 36.21 2.90
52 53 8.519526 GTTATGTTTCCTAACCATGAACAATGA 58.480 33.333 0.00 0.00 36.21 2.57
53 54 7.759433 GGTTATGTTTCCTAACCATGAACAATG 59.241 37.037 7.24 0.00 44.95 2.82
54 55 7.836842 GGTTATGTTTCCTAACCATGAACAAT 58.163 34.615 7.24 0.00 44.95 2.71
55 56 7.222000 GGTTATGTTTCCTAACCATGAACAA 57.778 36.000 7.24 0.00 44.95 2.83
56 57 6.827586 GGTTATGTTTCCTAACCATGAACA 57.172 37.500 7.24 0.00 44.95 3.18
63 64 7.696992 TCAAAGATGGTTATGTTTCCTAACC 57.303 36.000 5.49 5.49 45.53 2.85
67 68 8.458843 CGTTAATCAAAGATGGTTATGTTTCCT 58.541 33.333 0.00 0.00 32.32 3.36
68 69 8.455682 TCGTTAATCAAAGATGGTTATGTTTCC 58.544 33.333 0.00 0.00 32.32 3.13
69 70 9.490663 CTCGTTAATCAAAGATGGTTATGTTTC 57.509 33.333 0.00 0.00 32.32 2.78
70 71 7.968405 GCTCGTTAATCAAAGATGGTTATGTTT 59.032 33.333 0.00 0.00 32.32 2.83
71 72 7.336931 AGCTCGTTAATCAAAGATGGTTATGTT 59.663 33.333 0.00 0.00 32.32 2.71
72 73 6.823689 AGCTCGTTAATCAAAGATGGTTATGT 59.176 34.615 0.00 0.00 32.32 2.29
73 74 7.251704 AGCTCGTTAATCAAAGATGGTTATG 57.748 36.000 0.00 0.00 32.32 1.90
74 75 8.204836 ACTAGCTCGTTAATCAAAGATGGTTAT 58.795 33.333 0.00 0.00 32.32 1.89
75 76 7.553334 ACTAGCTCGTTAATCAAAGATGGTTA 58.447 34.615 0.00 0.00 30.84 2.85
76 77 6.407202 ACTAGCTCGTTAATCAAAGATGGTT 58.593 36.000 0.00 0.00 33.49 3.67
77 78 5.978814 ACTAGCTCGTTAATCAAAGATGGT 58.021 37.500 0.00 0.00 0.00 3.55
78 79 6.042777 TGACTAGCTCGTTAATCAAAGATGG 58.957 40.000 0.00 0.00 0.00 3.51
79 80 7.276658 ACTTGACTAGCTCGTTAATCAAAGATG 59.723 37.037 0.00 0.00 0.00 2.90
80 81 7.324178 ACTTGACTAGCTCGTTAATCAAAGAT 58.676 34.615 0.00 0.00 0.00 2.40
81 82 6.688578 ACTTGACTAGCTCGTTAATCAAAGA 58.311 36.000 0.00 0.00 0.00 2.52
82 83 6.952935 ACTTGACTAGCTCGTTAATCAAAG 57.047 37.500 0.00 0.00 0.00 2.77
83 84 7.823665 TCTACTTGACTAGCTCGTTAATCAAA 58.176 34.615 0.00 0.00 0.00 2.69
84 85 7.387119 TCTACTTGACTAGCTCGTTAATCAA 57.613 36.000 0.00 0.00 0.00 2.57
85 86 6.038382 CCTCTACTTGACTAGCTCGTTAATCA 59.962 42.308 0.00 0.00 0.00 2.57
86 87 6.432107 CCTCTACTTGACTAGCTCGTTAATC 58.568 44.000 0.00 0.00 0.00 1.75
87 88 5.221087 GCCTCTACTTGACTAGCTCGTTAAT 60.221 44.000 0.00 0.00 0.00 1.40
88 89 4.096081 GCCTCTACTTGACTAGCTCGTTAA 59.904 45.833 0.00 0.00 0.00 2.01
89 90 3.626670 GCCTCTACTTGACTAGCTCGTTA 59.373 47.826 0.00 0.00 0.00 3.18
90 91 2.424246 GCCTCTACTTGACTAGCTCGTT 59.576 50.000 0.00 0.00 0.00 3.85
91 92 2.018515 GCCTCTACTTGACTAGCTCGT 58.981 52.381 0.00 0.00 0.00 4.18
92 93 2.017782 TGCCTCTACTTGACTAGCTCG 58.982 52.381 0.00 0.00 0.00 5.03
93 94 4.825085 AGTATGCCTCTACTTGACTAGCTC 59.175 45.833 0.00 0.00 0.00 4.09
94 95 4.798882 AGTATGCCTCTACTTGACTAGCT 58.201 43.478 0.00 0.00 0.00 3.32
95 96 5.766174 ACTAGTATGCCTCTACTTGACTAGC 59.234 44.000 0.00 0.00 38.86 3.42
96 97 6.993308 TCACTAGTATGCCTCTACTTGACTAG 59.007 42.308 0.00 0.00 40.35 2.57
97 98 6.766944 GTCACTAGTATGCCTCTACTTGACTA 59.233 42.308 0.00 0.00 36.95 2.59
98 99 5.591067 GTCACTAGTATGCCTCTACTTGACT 59.409 44.000 0.00 0.00 36.95 3.41
99 100 5.357314 TGTCACTAGTATGCCTCTACTTGAC 59.643 44.000 0.00 11.98 38.64 3.18
100 101 5.357314 GTGTCACTAGTATGCCTCTACTTGA 59.643 44.000 0.00 0.18 33.96 3.02
101 102 5.358442 AGTGTCACTAGTATGCCTCTACTTG 59.642 44.000 2.87 0.00 33.96 3.16
102 103 5.511363 AGTGTCACTAGTATGCCTCTACTT 58.489 41.667 2.87 0.00 33.96 2.24
103 104 5.118729 AGTGTCACTAGTATGCCTCTACT 57.881 43.478 2.87 0.00 36.04 2.57
104 105 5.838531 AAGTGTCACTAGTATGCCTCTAC 57.161 43.478 5.77 0.00 0.00 2.59
105 106 5.715279 ACAAAGTGTCACTAGTATGCCTCTA 59.285 40.000 5.77 0.00 0.00 2.43
106 107 4.528596 ACAAAGTGTCACTAGTATGCCTCT 59.471 41.667 5.77 0.00 0.00 3.69
107 108 4.822026 ACAAAGTGTCACTAGTATGCCTC 58.178 43.478 5.77 0.00 0.00 4.70
108 109 4.891992 ACAAAGTGTCACTAGTATGCCT 57.108 40.909 5.77 0.00 0.00 4.75
109 110 5.238650 ACAAACAAAGTGTCACTAGTATGCC 59.761 40.000 5.77 0.00 0.00 4.40
110 111 6.202954 AGACAAACAAAGTGTCACTAGTATGC 59.797 38.462 5.77 0.58 46.44 3.14
111 112 7.715265 AGACAAACAAAGTGTCACTAGTATG 57.285 36.000 5.77 6.23 46.44 2.39
112 113 9.424319 CATAGACAAACAAAGTGTCACTAGTAT 57.576 33.333 5.77 0.00 46.44 2.12
113 114 8.418662 ACATAGACAAACAAAGTGTCACTAGTA 58.581 33.333 5.77 0.00 46.44 1.82
114 115 7.272978 ACATAGACAAACAAAGTGTCACTAGT 58.727 34.615 5.77 5.56 46.44 2.57
115 116 7.715265 ACATAGACAAACAAAGTGTCACTAG 57.285 36.000 5.77 4.90 46.44 2.57
116 117 9.772973 AATACATAGACAAACAAAGTGTCACTA 57.227 29.630 5.77 0.00 46.44 2.74
117 118 8.677148 AATACATAGACAAACAAAGTGTCACT 57.323 30.769 0.00 0.00 46.44 3.41
118 119 8.556194 TGAATACATAGACAAACAAAGTGTCAC 58.444 33.333 7.26 0.00 46.44 3.67
119 120 8.556194 GTGAATACATAGACAAACAAAGTGTCA 58.444 33.333 7.26 0.00 46.44 3.58
120 121 8.556194 TGTGAATACATAGACAAACAAAGTGTC 58.444 33.333 0.00 0.00 44.75 3.67
121 122 8.342634 GTGTGAATACATAGACAAACAAAGTGT 58.657 33.333 0.00 0.00 39.39 3.55
122 123 8.341903 TGTGTGAATACATAGACAAACAAAGTG 58.658 33.333 0.00 0.00 39.39 3.16
123 124 8.342634 GTGTGTGAATACATAGACAAACAAAGT 58.657 33.333 0.00 0.00 39.39 2.66
124 125 8.341903 TGTGTGTGAATACATAGACAAACAAAG 58.658 33.333 0.00 0.00 38.13 2.77
125 126 8.214721 TGTGTGTGAATACATAGACAAACAAA 57.785 30.769 0.00 0.00 38.13 2.83
126 127 7.793927 TGTGTGTGAATACATAGACAAACAA 57.206 32.000 0.00 0.00 38.13 2.83
127 128 7.443879 ACATGTGTGTGAATACATAGACAAACA 59.556 33.333 0.00 0.00 42.36 2.83
128 129 7.806690 ACATGTGTGTGAATACATAGACAAAC 58.193 34.615 0.00 0.00 42.36 2.93
129 130 7.977789 ACATGTGTGTGAATACATAGACAAA 57.022 32.000 0.00 0.00 42.36 2.83
130 131 9.665719 AATACATGTGTGTGAATACATAGACAA 57.334 29.630 9.11 0.00 42.36 3.18
138 139 9.716507 GGAAACATAATACATGTGTGTGAATAC 57.283 33.333 9.11 0.00 39.39 1.89
139 140 8.608317 CGGAAACATAATACATGTGTGTGAATA 58.392 33.333 9.11 0.00 39.39 1.75
140 141 7.415095 CCGGAAACATAATACATGTGTGTGAAT 60.415 37.037 9.11 0.35 39.39 2.57
141 142 6.128145 CCGGAAACATAATACATGTGTGTGAA 60.128 38.462 9.11 0.00 39.39 3.18
142 143 5.352846 CCGGAAACATAATACATGTGTGTGA 59.647 40.000 9.11 0.00 39.39 3.58
143 144 5.123186 ACCGGAAACATAATACATGTGTGTG 59.877 40.000 9.46 7.59 39.39 3.82
144 145 5.250200 ACCGGAAACATAATACATGTGTGT 58.750 37.500 9.46 5.46 42.39 3.72
145 146 5.811399 ACCGGAAACATAATACATGTGTG 57.189 39.130 9.46 4.81 31.80 3.82
146 147 7.925043 TTTACCGGAAACATAATACATGTGT 57.075 32.000 9.46 0.00 31.80 3.72
147 148 9.872757 GTATTTACCGGAAACATAATACATGTG 57.127 33.333 9.46 0.00 31.80 3.21
148 149 9.616156 TGTATTTACCGGAAACATAATACATGT 57.384 29.630 9.46 2.69 0.00 3.21
156 157 9.048446 GCTAGAATTGTATTTACCGGAAACATA 57.952 33.333 9.46 0.00 0.00 2.29
157 158 7.554835 TGCTAGAATTGTATTTACCGGAAACAT 59.445 33.333 9.46 0.00 0.00 2.71
158 159 6.879993 TGCTAGAATTGTATTTACCGGAAACA 59.120 34.615 9.46 1.34 0.00 2.83
159 160 7.311364 TGCTAGAATTGTATTTACCGGAAAC 57.689 36.000 9.46 0.00 0.00 2.78
160 161 7.771361 TCATGCTAGAATTGTATTTACCGGAAA 59.229 33.333 9.46 4.83 0.00 3.13
161 162 7.276658 TCATGCTAGAATTGTATTTACCGGAA 58.723 34.615 9.46 0.00 0.00 4.30
162 163 6.822442 TCATGCTAGAATTGTATTTACCGGA 58.178 36.000 9.46 0.00 0.00 5.14
163 164 7.490962 TTCATGCTAGAATTGTATTTACCGG 57.509 36.000 0.00 0.00 0.00 5.28
239 240 4.349342 AGTGAAGGAAATATGCCCTAGAGG 59.651 45.833 0.00 0.00 39.47 3.69
240 241 5.512232 GGAGTGAAGGAAATATGCCCTAGAG 60.512 48.000 0.00 0.00 31.36 2.43
241 242 4.348168 GGAGTGAAGGAAATATGCCCTAGA 59.652 45.833 0.00 0.00 31.36 2.43
242 243 4.103153 TGGAGTGAAGGAAATATGCCCTAG 59.897 45.833 0.00 0.00 31.36 3.02
243 244 4.044308 TGGAGTGAAGGAAATATGCCCTA 58.956 43.478 0.00 0.00 31.36 3.53
244 245 2.852449 TGGAGTGAAGGAAATATGCCCT 59.148 45.455 0.00 0.00 0.00 5.19
245 246 3.117888 TCTGGAGTGAAGGAAATATGCCC 60.118 47.826 0.00 0.00 0.00 5.36
246 247 4.133078 CTCTGGAGTGAAGGAAATATGCC 58.867 47.826 0.00 0.00 0.00 4.40
247 248 4.133078 CCTCTGGAGTGAAGGAAATATGC 58.867 47.826 0.00 0.00 0.00 3.14
248 249 5.121811 CACCTCTGGAGTGAAGGAAATATG 58.878 45.833 0.00 0.00 0.00 1.78
249 250 4.164988 CCACCTCTGGAGTGAAGGAAATAT 59.835 45.833 0.00 0.00 40.55 1.28
250 251 3.519510 CCACCTCTGGAGTGAAGGAAATA 59.480 47.826 0.00 0.00 40.55 1.40
251 252 2.307098 CCACCTCTGGAGTGAAGGAAAT 59.693 50.000 0.00 0.00 40.55 2.17
252 253 1.699634 CCACCTCTGGAGTGAAGGAAA 59.300 52.381 0.00 0.00 40.55 3.13
253 254 1.352083 CCACCTCTGGAGTGAAGGAA 58.648 55.000 0.00 0.00 40.55 3.36
254 255 0.545309 CCCACCTCTGGAGTGAAGGA 60.545 60.000 0.00 0.00 40.55 3.36
255 256 1.557269 CCCCACCTCTGGAGTGAAGG 61.557 65.000 0.00 0.00 40.55 3.46
256 257 1.986413 CCCCACCTCTGGAGTGAAG 59.014 63.158 0.00 0.00 40.55 3.02
257 258 2.224159 GCCCCACCTCTGGAGTGAA 61.224 63.158 0.00 0.00 40.55 3.18
258 259 2.607750 GCCCCACCTCTGGAGTGA 60.608 66.667 0.00 0.00 40.55 3.41
259 260 2.930019 TGCCCCACCTCTGGAGTG 60.930 66.667 0.00 0.00 40.55 3.51
260 261 2.608988 CTGCCCCACCTCTGGAGT 60.609 66.667 0.00 0.00 40.55 3.85
647 749 1.059913 CCAGTCCACTTCCACTTCCT 58.940 55.000 0.00 0.00 0.00 3.36
879 986 7.255139 CCTCAAAATTATTATCCGTCTTGACCC 60.255 40.741 0.00 0.00 0.00 4.46
902 1009 3.933332 CGTTCTGGTCCAAACTATTCCTC 59.067 47.826 12.28 0.00 0.00 3.71
908 1040 2.036733 CTGTCCGTTCTGGTCCAAACTA 59.963 50.000 12.28 2.30 39.52 2.24
1216 2022 3.082701 GCAGAGGAGGAGCAGGCT 61.083 66.667 0.00 0.00 0.00 4.58
1341 2147 1.672854 CCCTCGTCATTAGGCCGACA 61.673 60.000 8.90 0.00 32.34 4.35
1817 2624 2.113433 GGCGTCGAGGTAGCTCTCA 61.113 63.158 19.17 3.53 33.59 3.27
2115 2942 0.110056 GCAAGATGTGAACTGCGGTG 60.110 55.000 0.00 0.00 0.00 4.94
2436 3269 9.923143 TTCTATATATGTACGGCCATAATATGC 57.077 33.333 2.24 0.00 31.44 3.14
2516 3349 2.399396 ACACGAAACGGAAAATGCAG 57.601 45.000 0.00 0.00 0.00 4.41
2519 3352 2.467305 CAGCAACACGAAACGGAAAATG 59.533 45.455 0.00 0.00 0.00 2.32
2526 3359 1.369209 CCTGCAGCAACACGAAACG 60.369 57.895 8.66 0.00 0.00 3.60
2651 3484 6.693315 ATATGGGTCAAGTAATTTGGAACG 57.307 37.500 0.00 0.00 37.39 3.95
2661 3494 8.573885 CGTGTCTAGATAAATATGGGTCAAGTA 58.426 37.037 0.00 0.00 0.00 2.24
2662 3495 7.287005 TCGTGTCTAGATAAATATGGGTCAAGT 59.713 37.037 0.00 0.00 0.00 3.16
2663 3496 7.658261 TCGTGTCTAGATAAATATGGGTCAAG 58.342 38.462 0.00 0.00 0.00 3.02
2664 3497 7.591421 TCGTGTCTAGATAAATATGGGTCAA 57.409 36.000 0.00 0.00 0.00 3.18
2665 3498 7.591421 TTCGTGTCTAGATAAATATGGGTCA 57.409 36.000 0.00 0.00 0.00 4.02
2666 3499 8.088981 ACATTCGTGTCTAGATAAATATGGGTC 58.911 37.037 0.00 0.00 0.00 4.46
2667 3500 7.963532 ACATTCGTGTCTAGATAAATATGGGT 58.036 34.615 0.00 0.00 0.00 4.51
2717 3550 9.661563 ACTTGAATTTGTCTAAATACGGATGTA 57.338 29.630 0.00 0.00 35.50 2.29
2718 3551 8.561738 ACTTGAATTTGTCTAAATACGGATGT 57.438 30.769 0.00 0.00 35.50 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.