Multiple sequence alignment - TraesCS7A01G494400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G494400 chr7A 100.000 3815 0 0 1 3815 682900208 682896394 0.000000e+00 7046.0
1 TraesCS7A01G494400 chr7A 92.017 1829 123 14 997 2815 726606055 726604240 0.000000e+00 2547.0
2 TraesCS7A01G494400 chr7A 93.046 1740 109 11 997 2730 727276623 727278356 0.000000e+00 2532.0
3 TraesCS7A01G494400 chr7A 91.748 618 46 4 2117 2730 727303658 727304274 0.000000e+00 854.0
4 TraesCS7A01G494400 chr7A 79.203 577 70 29 431 978 727276009 727276564 4.690000e-94 355.0
5 TraesCS7A01G494400 chr7A 79.203 577 70 29 431 978 727301503 727302058 4.690000e-94 355.0
6 TraesCS7A01G494400 chr7A 88.550 262 24 4 3396 3653 13776473 13776214 2.860000e-81 313.0
7 TraesCS7A01G494400 chr7A 85.714 287 29 5 3396 3670 704890111 704890397 3.730000e-75 292.0
8 TraesCS7A01G494400 chr7B 91.818 2872 132 36 999 3815 671702046 671704869 0.000000e+00 3906.0
9 TraesCS7A01G494400 chr7B 91.128 1826 139 16 997 2815 685666719 685668528 0.000000e+00 2453.0
10 TraesCS7A01G494400 chr7B 90.358 643 40 10 344 978 671701360 671701988 0.000000e+00 824.0
11 TraesCS7A01G494400 chr7B 81.723 383 39 11 1 352 671700910 671701292 1.340000e-74 291.0
12 TraesCS7A01G494400 chr7D 94.914 2143 82 17 998 3120 591814534 591812399 0.000000e+00 3328.0
13 TraesCS7A01G494400 chr7D 91.100 618 28 3 1 614 591815832 591815238 0.000000e+00 811.0
14 TraesCS7A01G494400 chr7D 94.609 371 11 4 621 986 591814950 591814584 1.990000e-157 566.0
15 TraesCS7A01G494400 chr7D 88.966 290 29 1 3395 3681 531593515 531593804 4.690000e-94 355.0
16 TraesCS7A01G494400 chr7D 94.030 134 8 0 3682 3815 591812239 591812106 1.800000e-48 204.0
17 TraesCS7A01G494400 chr7D 88.750 80 6 1 2953 3032 591817170 591817246 1.130000e-15 95.3
18 TraesCS7A01G494400 chr5B 84.432 713 109 2 1964 2675 622605452 622606163 0.000000e+00 701.0
19 TraesCS7A01G494400 chr5B 82.953 745 101 19 1109 1834 622604522 622605259 0.000000e+00 649.0
20 TraesCS7A01G494400 chr5B 86.348 293 27 6 3396 3676 684749894 684749603 1.330000e-79 307.0
21 TraesCS7A01G494400 chr5B 87.417 151 18 1 3158 3307 669443417 669443267 5.070000e-39 172.0
22 TraesCS7A01G494400 chr3A 82.698 734 112 13 1107 1834 609688652 609687928 4.160000e-179 638.0
23 TraesCS7A01G494400 chr3B 82.016 734 117 13 1107 1834 620455827 620455103 9.060000e-171 610.0
24 TraesCS7A01G494400 chr3B 80.471 722 131 7 1961 2674 620454925 620454206 9.320000e-151 544.0
25 TraesCS7A01G494400 chr3B 89.041 146 15 1 3158 3302 804111758 804111903 3.030000e-41 180.0
26 TraesCS7A01G494400 chr3D 81.583 733 122 11 1107 1834 466680004 466679280 9.120000e-166 593.0
27 TraesCS7A01G494400 chr3D 80.305 721 134 5 1961 2674 466679102 466678383 4.340000e-149 538.0
28 TraesCS7A01G494400 chr3D 87.108 287 25 4 3396 3670 55347854 55347568 7.960000e-82 315.0
29 TraesCS7A01G494400 chr3D 86.207 145 18 2 3161 3305 431291771 431291629 5.100000e-34 156.0
30 TraesCS7A01G494400 chr6B 86.242 298 27 6 3395 3680 682361753 682361458 1.030000e-80 311.0
31 TraesCS7A01G494400 chr4B 86.458 288 26 5 3396 3670 662612840 662612553 1.720000e-78 303.0
32 TraesCS7A01G494400 chrUn 86.111 288 26 7 3396 3670 38969291 38969577 8.010000e-77 298.0
33 TraesCS7A01G494400 chrUn 84.768 151 21 2 3158 3306 110519802 110519652 2.370000e-32 150.0
34 TraesCS7A01G494400 chr1D 91.391 151 12 1 3158 3307 23371896 23372046 5.000000e-49 206.0
35 TraesCS7A01G494400 chr2B 89.041 146 15 1 3158 3302 621966345 621966490 3.030000e-41 180.0
36 TraesCS7A01G494400 chr5D 84.516 155 23 1 3158 3311 91404113 91403959 6.600000e-33 152.0
37 TraesCS7A01G494400 chr2D 85.821 134 13 4 3180 3310 589286140 589286270 1.850000e-28 137.0
38 TraesCS7A01G494400 chr2D 78.723 141 14 9 276 409 515806282 515806151 3.160000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G494400 chr7A 682896394 682900208 3814 True 7046.000000 7046 100.000000 1 3815 1 chr7A.!!$R2 3814
1 TraesCS7A01G494400 chr7A 726604240 726606055 1815 True 2547.000000 2547 92.017000 997 2815 1 chr7A.!!$R3 1818
2 TraesCS7A01G494400 chr7A 727276009 727278356 2347 False 1443.500000 2532 86.124500 431 2730 2 chr7A.!!$F2 2299
3 TraesCS7A01G494400 chr7A 727301503 727304274 2771 False 604.500000 854 85.475500 431 2730 2 chr7A.!!$F3 2299
4 TraesCS7A01G494400 chr7B 685666719 685668528 1809 False 2453.000000 2453 91.128000 997 2815 1 chr7B.!!$F1 1818
5 TraesCS7A01G494400 chr7B 671700910 671704869 3959 False 1673.666667 3906 87.966333 1 3815 3 chr7B.!!$F2 3814
6 TraesCS7A01G494400 chr7D 591812106 591815832 3726 True 1227.250000 3328 93.663250 1 3815 4 chr7D.!!$R1 3814
7 TraesCS7A01G494400 chr5B 622604522 622606163 1641 False 675.000000 701 83.692500 1109 2675 2 chr5B.!!$F1 1566
8 TraesCS7A01G494400 chr3A 609687928 609688652 724 True 638.000000 638 82.698000 1107 1834 1 chr3A.!!$R1 727
9 TraesCS7A01G494400 chr3B 620454206 620455827 1621 True 577.000000 610 81.243500 1107 2674 2 chr3B.!!$R1 1567
10 TraesCS7A01G494400 chr3D 466678383 466680004 1621 True 565.500000 593 80.944000 1107 2674 2 chr3D.!!$R3 1567

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
679 1119 0.750850 TAGCCGCCACTAATCCTCAC 59.249 55.0 0.0 0.00 0.00 3.51 F
1332 1837 0.611062 TGGTGTACCTAGCGCTGACT 60.611 55.0 22.9 3.77 36.82 3.41 F
1954 2500 0.035056 GTGTGGTATGAAGGGCTGCT 60.035 55.0 0.0 0.00 0.00 4.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1954 2500 1.336440 CGGCTTGAACATGTTGGTGAA 59.664 47.619 17.58 2.54 0.0 3.18 R
2732 3679 0.179169 GTCCTCCTCTGTAACGACGC 60.179 60.000 0.00 0.00 0.0 5.19 R
3732 4781 0.177836 CCATATCCGACAGTGGTGCA 59.822 55.000 0.00 0.00 0.0 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
127 129 7.610305 CCAATCTCTACTCCTATAAGAGACCTC 59.390 44.444 5.33 0.00 46.25 3.85
131 137 6.523840 TCTACTCCTATAAGAGACCTCGTTC 58.476 44.000 5.33 0.00 37.33 3.95
164 170 6.042552 TGGTGGTTTGTTTGTCATCCATTATT 59.957 34.615 0.00 0.00 34.75 1.40
392 536 9.944663 TTCTTCAAGTTTGTGAACATGTATTAC 57.055 29.630 0.00 0.00 38.26 1.89
396 540 8.717821 TCAAGTTTGTGAACATGTATTACTAGC 58.282 33.333 0.00 0.00 38.26 3.42
436 580 5.294356 ACAGTTAATCGCACTGACACTTTA 58.706 37.500 8.03 0.00 43.90 1.85
437 581 5.405571 ACAGTTAATCGCACTGACACTTTAG 59.594 40.000 8.03 0.00 43.90 1.85
517 661 1.401905 GAATTTGTCTTAGGCAGGCCG 59.598 52.381 4.37 0.00 41.95 6.13
564 715 1.073444 GGGAGGGACGGAAGAAAAAGT 59.927 52.381 0.00 0.00 0.00 2.66
585 736 1.007387 GCCAACTGAAAGCAACGGG 60.007 57.895 0.00 0.00 37.60 5.28
598 751 1.752788 GCAACGGGGTATAGGCCAAAT 60.753 52.381 5.01 0.00 0.00 2.32
602 755 2.636403 ACGGGGTATAGGCCAAATAGTC 59.364 50.000 5.01 0.00 0.00 2.59
615 768 5.629079 CCAAATAGTCTTTGGTCAACTCC 57.371 43.478 11.05 0.00 42.92 3.85
616 769 5.070001 CCAAATAGTCTTTGGTCAACTCCA 58.930 41.667 11.05 0.00 42.92 3.86
617 770 5.711976 CCAAATAGTCTTTGGTCAACTCCAT 59.288 40.000 11.05 0.00 42.92 3.41
618 771 6.349611 CCAAATAGTCTTTGGTCAACTCCATG 60.350 42.308 11.05 0.00 42.92 3.66
679 1119 0.750850 TAGCCGCCACTAATCCTCAC 59.249 55.000 0.00 0.00 0.00 3.51
693 1133 0.968901 CCTCACACAATGCTGCCCAT 60.969 55.000 0.00 0.00 35.06 4.00
807 1251 2.100916 ACTATACCAGCTACACCTTGCG 59.899 50.000 0.00 0.00 0.00 4.85
989 1447 7.364408 GGTGTTGTACCTATCTTTCTATCACCA 60.364 40.741 0.00 0.00 46.51 4.17
990 1448 8.038944 GTGTTGTACCTATCTTTCTATCACCAA 58.961 37.037 0.00 0.00 0.00 3.67
992 1450 9.614792 GTTGTACCTATCTTTCTATCACCAATT 57.385 33.333 0.00 0.00 0.00 2.32
993 1451 9.832445 TTGTACCTATCTTTCTATCACCAATTC 57.168 33.333 0.00 0.00 0.00 2.17
1332 1837 0.611062 TGGTGTACCTAGCGCTGACT 60.611 55.000 22.90 3.77 36.82 3.41
1611 2116 3.244561 ACATCTTCTTCGTCCACACCATT 60.245 43.478 0.00 0.00 0.00 3.16
1954 2500 0.035056 GTGTGGTATGAAGGGCTGCT 60.035 55.000 0.00 0.00 0.00 4.24
2181 3107 3.637926 GAACTACGCCGGCCGAGTT 62.638 63.158 30.75 30.75 38.81 3.01
2199 3125 4.530857 GGCGCCGGCTACATGTCT 62.531 66.667 26.68 0.00 39.81 3.41
2211 3137 4.238514 GCTACATGTCTGAGTTCTTCGTT 58.761 43.478 0.00 0.00 0.00 3.85
2232 3158 4.807039 CGGTACAGGTTCCCGCGG 62.807 72.222 21.04 21.04 34.62 6.46
2554 3486 0.329261 CAAGATCTGCAAGGGGGTGA 59.671 55.000 0.00 0.00 0.00 4.02
2664 3596 6.875972 AACTTCTACAAGGGTGACATCTAT 57.124 37.500 0.00 0.00 33.37 1.98
2718 3665 1.002544 GCCGATTATCAAGGAGGGGAG 59.997 57.143 0.00 0.00 0.00 4.30
2732 3679 3.775654 GGAGACGGTGGAGGGCAG 61.776 72.222 0.00 0.00 0.00 4.85
2757 3704 0.039180 TTACAGAGGAGGACGAGGCA 59.961 55.000 0.00 0.00 0.00 4.75
2769 3716 2.042831 CGAGGCAAAGAAGCAGGGG 61.043 63.158 0.00 0.00 35.83 4.79
2797 3744 1.490490 AGAAACTGCAGGAGGTCAACA 59.510 47.619 19.93 0.00 0.00 3.33
2816 3766 6.145534 GTCAACAATGACGAGTTCAAGTGATA 59.854 38.462 0.00 0.00 45.94 2.15
2881 3835 5.485353 AGAGAAGATGTGGATGAACCTGTAA 59.515 40.000 0.00 0.00 39.86 2.41
2899 3856 7.680730 ACCTGTAATGTTTCTGATGTTACTCT 58.319 34.615 0.00 0.00 0.00 3.24
2900 3857 7.819900 ACCTGTAATGTTTCTGATGTTACTCTC 59.180 37.037 0.00 0.00 0.00 3.20
3080 4046 9.374838 GCACTCCAAAATGATTTCAAAATATCT 57.625 29.630 0.00 0.00 0.00 1.98
3091 4057 8.303156 TGATTTCAAAATATCTTTTCTTGGCGA 58.697 29.630 0.00 0.00 32.21 5.54
3137 4130 5.539582 ACGAAGCGCTCAAAACATTTATA 57.460 34.783 12.06 0.00 0.00 0.98
3173 4183 6.100668 GCTAGGTCACCAAGTCTAAGTAAAG 58.899 44.000 0.00 0.00 0.00 1.85
3176 4186 4.995487 GGTCACCAAGTCTAAGTAAAGTGG 59.005 45.833 0.00 0.00 0.00 4.00
3292 4302 2.349275 CGAAGTCTAGGTCGACTGAGAC 59.651 54.545 28.31 28.31 43.14 3.36
3302 4312 4.081420 AGGTCGACTGAGACATAGCAAAAT 60.081 41.667 16.46 0.00 42.62 1.82
3305 4315 5.120830 GTCGACTGAGACATAGCAAAATTGT 59.879 40.000 8.70 0.00 40.65 2.71
3307 4317 6.204688 TCGACTGAGACATAGCAAAATTGTTT 59.795 34.615 0.00 0.00 0.00 2.83
3322 4332 5.613358 AATTGTTTTTCGTTTGTTTGCCA 57.387 30.435 0.00 0.00 0.00 4.92
3323 4333 5.809719 ATTGTTTTTCGTTTGTTTGCCAT 57.190 30.435 0.00 0.00 0.00 4.40
3324 4334 6.910536 ATTGTTTTTCGTTTGTTTGCCATA 57.089 29.167 0.00 0.00 0.00 2.74
3325 4335 6.721571 TTGTTTTTCGTTTGTTTGCCATAA 57.278 29.167 0.00 0.00 0.00 1.90
3328 4338 7.581476 TGTTTTTCGTTTGTTTGCCATAAAAA 58.419 26.923 0.00 0.00 0.00 1.94
3329 4339 8.237267 TGTTTTTCGTTTGTTTGCCATAAAAAT 58.763 25.926 0.00 0.00 30.19 1.82
3391 4428 2.400467 TCCCTAGCTTGAGGTATCCC 57.600 55.000 0.00 0.00 34.45 3.85
3433 4473 6.347696 TCAGTTTCAGCAAAATTTCACCAAT 58.652 32.000 0.00 0.00 0.00 3.16
3442 4482 7.588488 CAGCAAAATTTCACCAATCAAAATCAC 59.412 33.333 0.00 0.00 0.00 3.06
3447 4487 8.961294 AATTTCACCAATCAAAATCACTGAAA 57.039 26.923 0.00 0.00 32.53 2.69
3449 4489 8.961294 TTTCACCAATCAAAATCACTGAAATT 57.039 26.923 0.00 0.00 0.00 1.82
3450 4490 8.592105 TTCACCAATCAAAATCACTGAAATTC 57.408 30.769 0.00 0.00 0.00 2.17
3451 4491 7.724287 TCACCAATCAAAATCACTGAAATTCA 58.276 30.769 0.00 0.00 0.00 2.57
3452 4492 7.652909 TCACCAATCAAAATCACTGAAATTCAC 59.347 33.333 0.00 0.00 0.00 3.18
3453 4493 7.654520 CACCAATCAAAATCACTGAAATTCACT 59.345 33.333 0.00 0.00 0.00 3.41
3454 4494 8.859090 ACCAATCAAAATCACTGAAATTCACTA 58.141 29.630 0.00 0.00 0.00 2.74
3484 4524 6.642131 TCAGTTATTTCAGTTTGCATTTCAGC 59.358 34.615 0.00 0.00 0.00 4.26
3486 4526 2.420628 TTCAGTTTGCATTTCAGCCG 57.579 45.000 0.00 0.00 0.00 5.52
3507 4547 5.501715 CCGAATGACCGAAATATTCACTTG 58.498 41.667 0.00 0.00 31.87 3.16
3517 4557 9.357652 ACCGAAATATTCACTTGAATTCAATTG 57.642 29.630 24.98 24.98 41.64 2.32
3657 4706 5.947228 ATTTCGCTGAAATCTCACTGAAA 57.053 34.783 9.68 0.00 37.68 2.69
3747 4796 2.217038 ACCTGCACCACTGTCGGAT 61.217 57.895 3.76 0.00 0.00 4.18
3771 4820 2.351738 GGTTTCTTTGGAGGTTGCATCG 60.352 50.000 0.00 0.00 0.00 3.84
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 6.854578 TCCTGTTAAAGAAATAACTTCCCCA 58.145 36.000 0.00 0.00 36.84 4.96
89 91 9.890915 AGGAGTAGAGATTGGAGTATCTAAAAT 57.109 33.333 0.00 0.00 39.67 1.82
127 129 3.253188 ACAAACCACCATCATCAAGAACG 59.747 43.478 0.00 0.00 0.00 3.95
131 137 4.947645 ACAAACAAACCACCATCATCAAG 58.052 39.130 0.00 0.00 0.00 3.02
164 170 7.433131 GCTTGATGCAGATCGAATGAAAAATAA 59.567 33.333 5.26 0.00 42.31 1.40
176 216 0.043566 CGTTCGCTTGATGCAGATCG 60.044 55.000 0.00 0.00 43.06 3.69
187 227 0.602905 AGCTTACCTTGCGTTCGCTT 60.603 50.000 17.63 3.21 35.28 4.68
337 379 8.932791 CATCACCCTCGTTTTTGGTATATATAC 58.067 37.037 13.60 13.60 0.00 1.47
338 380 8.653191 ACATCACCCTCGTTTTTGGTATATATA 58.347 33.333 0.00 0.00 0.00 0.86
339 381 7.514721 ACATCACCCTCGTTTTTGGTATATAT 58.485 34.615 0.00 0.00 0.00 0.86
340 382 6.891388 ACATCACCCTCGTTTTTGGTATATA 58.109 36.000 0.00 0.00 0.00 0.86
341 383 5.751586 ACATCACCCTCGTTTTTGGTATAT 58.248 37.500 0.00 0.00 0.00 0.86
342 384 5.168647 ACATCACCCTCGTTTTTGGTATA 57.831 39.130 0.00 0.00 0.00 1.47
343 385 4.028993 ACATCACCCTCGTTTTTGGTAT 57.971 40.909 0.00 0.00 0.00 2.73
392 536 5.858381 TGTAGCAGATCCAAAATAGGCTAG 58.142 41.667 0.00 0.00 33.53 3.42
394 538 4.164988 ACTGTAGCAGATCCAAAATAGGCT 59.835 41.667 2.91 0.00 35.18 4.58
395 539 4.455606 ACTGTAGCAGATCCAAAATAGGC 58.544 43.478 2.91 0.00 35.18 3.93
396 540 8.682936 ATTAACTGTAGCAGATCCAAAATAGG 57.317 34.615 2.91 0.00 35.18 2.57
436 580 7.581213 TGGTTGAAATTTGACATTGACTACT 57.419 32.000 0.00 0.00 0.00 2.57
437 581 9.906660 TTATGGTTGAAATTTGACATTGACTAC 57.093 29.630 0.00 0.00 0.00 2.73
490 634 4.724399 TGCCTAAGACAAATTCAAGGTGA 58.276 39.130 0.00 0.00 33.84 4.02
517 661 6.563196 GCGTTTTGGAATTAACCATGTGAAAC 60.563 38.462 0.00 0.00 39.82 2.78
564 715 0.102120 CGTTGCTTTCAGTTGGCCAA 59.898 50.000 16.05 16.05 0.00 4.52
598 751 3.327757 AGCATGGAGTTGACCAAAGACTA 59.672 43.478 0.00 0.00 43.47 2.59
602 755 2.030540 CACAGCATGGAGTTGACCAAAG 60.031 50.000 0.00 0.00 43.62 2.77
679 1119 1.338973 GTCCATATGGGCAGCATTGTG 59.661 52.381 21.74 0.00 40.23 3.33
807 1251 6.431234 AGATTTGGAGAAATGACAAGTACACC 59.569 38.462 0.00 0.00 31.58 4.16
978 1436 7.148018 GCCATTTCTGAGAATTGGTGATAGAAA 60.148 37.037 27.37 0.00 37.17 2.52
986 1444 2.094675 CGGCCATTTCTGAGAATTGGT 58.905 47.619 27.37 2.05 0.00 3.67
987 1445 1.406539 CCGGCCATTTCTGAGAATTGG 59.593 52.381 24.57 24.57 0.00 3.16
989 1447 1.106285 GCCGGCCATTTCTGAGAATT 58.894 50.000 18.11 0.00 0.00 2.17
990 1448 1.097547 CGCCGGCCATTTCTGAGAAT 61.098 55.000 23.46 0.00 0.00 2.40
992 1450 2.125147 CGCCGGCCATTTCTGAGA 60.125 61.111 23.46 0.00 0.00 3.27
993 1451 3.204827 CCGCCGGCCATTTCTGAG 61.205 66.667 23.46 2.52 0.00 3.35
1020 1525 3.356267 GTGCACATCACTGCCGCA 61.356 61.111 13.17 0.00 42.38 5.69
1026 1531 4.722700 GCCGGGGTGCACATCACT 62.723 66.667 20.43 0.00 44.98 3.41
1113 1618 0.029035 CGAAGATGTAGGTCGACCCG 59.971 60.000 30.82 19.70 36.92 5.28
1647 2158 2.598394 GGCTTGCTGTTGGGCTCA 60.598 61.111 0.00 0.00 0.00 4.26
1954 2500 1.336440 CGGCTTGAACATGTTGGTGAA 59.664 47.619 17.58 2.54 0.00 3.18
2178 3104 4.096003 ATGTAGCCGGCGCCAACT 62.096 61.111 28.98 24.34 34.57 3.16
2181 3107 4.830765 GACATGTAGCCGGCGCCA 62.831 66.667 28.98 21.84 34.57 5.69
2328 3254 1.507141 CGCCGAAGCAGAAACCAAGT 61.507 55.000 0.00 0.00 39.83 3.16
2331 3257 3.353836 GCGCCGAAGCAGAAACCA 61.354 61.111 0.00 0.00 39.83 3.67
2732 3679 0.179169 GTCCTCCTCTGTAACGACGC 60.179 60.000 0.00 0.00 0.00 5.19
2757 3704 3.117512 TCTTGTTCTTCCCCTGCTTCTTT 60.118 43.478 0.00 0.00 0.00 2.52
2769 3716 3.251972 CCTCCTGCAGTTTCTTGTTCTTC 59.748 47.826 13.81 0.00 0.00 2.87
2797 3744 8.088981 AGTTAGTTATCACTTGAACTCGTCATT 58.911 33.333 0.00 0.00 37.16 2.57
2846 3797 9.522804 CATCCACATCTTCTCTAAACTAAGTAC 57.477 37.037 0.00 0.00 0.00 2.73
2881 3835 6.997655 TGACAGAGAGTAACATCAGAAACAT 58.002 36.000 0.00 0.00 0.00 2.71
2899 3856 7.825270 ACCGTATTACCACATTAATTTGACAGA 59.175 33.333 3.10 0.00 0.00 3.41
2900 3857 7.981142 ACCGTATTACCACATTAATTTGACAG 58.019 34.615 3.10 0.00 0.00 3.51
3137 4130 2.108278 GACCTAGCCACACCCAACGT 62.108 60.000 0.00 0.00 0.00 3.99
3262 4272 4.569966 TCGACCTAGACTTCGTTATGTCTC 59.430 45.833 0.00 0.00 41.92 3.36
3292 4302 8.819152 AACAAACGAAAAACAATTTTGCTATG 57.181 26.923 0.00 0.00 38.83 2.23
3302 4312 6.721571 TTATGGCAAACAAACGAAAAACAA 57.278 29.167 0.00 0.00 0.00 2.83
3348 4358 9.937175 GGATGACATGTTTCTTAGCTATAAAAC 57.063 33.333 18.02 18.02 33.32 2.43
3368 4378 3.259625 GGATACCTCAAGCTAGGGATGAC 59.740 52.174 4.86 0.00 40.56 3.06
3391 4428 2.057316 TGAAATTGAAAACCATGCGCG 58.943 42.857 0.00 0.00 0.00 6.86
3461 4501 5.928264 GGCTGAAATGCAAACTGAAATAACT 59.072 36.000 0.00 0.00 34.04 2.24
3484 4524 5.293324 TCAAGTGAATATTTCGGTCATTCGG 59.707 40.000 0.00 0.00 32.47 4.30
3486 4526 9.226345 GAATTCAAGTGAATATTTCGGTCATTC 57.774 33.333 6.95 0.00 43.41 2.67
3631 4680 5.645067 TCAGTGAGATTTCAGCGAAATTCAT 59.355 36.000 14.65 7.20 41.56 2.57
3657 4706 4.330250 CACTCAGGATCATGGTTTTCACT 58.670 43.478 7.64 0.00 0.00 3.41
3727 4776 3.349006 CGACAGTGGTGCAGGTGC 61.349 66.667 0.00 0.00 42.50 5.01
3732 4781 0.177836 CCATATCCGACAGTGGTGCA 59.822 55.000 0.00 0.00 0.00 4.57
3747 4796 3.838565 TGCAACCTCCAAAGAAACCATA 58.161 40.909 0.00 0.00 0.00 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.