Multiple sequence alignment - TraesCS7A01G494300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G494300 chr7A 100.000 3953 0 0 1 3953 682893292 682889340 0.000000e+00 7300
1 TraesCS7A01G494300 chr7A 85.040 2012 235 40 978 2965 690532236 690534205 0.000000e+00 1988
2 TraesCS7A01G494300 chr7A 89.766 811 74 6 989 1799 687953113 687953914 0.000000e+00 1029
3 TraesCS7A01G494300 chr7A 80.829 1158 143 45 1834 2957 687953979 687955091 0.000000e+00 835
4 TraesCS7A01G494300 chr7A 80.198 202 36 3 3460 3661 106296627 106296430 8.850000e-32 148
5 TraesCS7A01G494300 chr7D 87.816 2216 165 42 989 3122 591806090 591803898 0.000000e+00 2499
6 TraesCS7A01G494300 chr7D 83.708 2044 211 77 989 2957 594986778 594988774 0.000000e+00 1818
7 TraesCS7A01G494300 chr7D 89.894 851 80 5 948 1795 598253172 598252325 0.000000e+00 1090
8 TraesCS7A01G494300 chr7D 83.860 1140 121 36 1852 2968 598252175 598251076 0.000000e+00 1027
9 TraesCS7A01G494300 chr7D 88.228 824 69 17 94 916 591807262 591806466 0.000000e+00 959
10 TraesCS7A01G494300 chr7D 85.549 519 47 13 3395 3908 591788346 591787851 5.860000e-143 518
11 TraesCS7A01G494300 chr7D 87.081 209 22 3 3195 3401 591788682 591788477 8.540000e-57 231
12 TraesCS7A01G494300 chr7B 83.980 2035 208 66 989 2957 666685408 666683426 0.000000e+00 1844
13 TraesCS7A01G494300 chr7B 88.969 834 89 3 963 1795 677115642 677114811 0.000000e+00 1027
14 TraesCS7A01G494300 chr7B 82.224 1142 148 30 1855 2969 677114660 677113547 0.000000e+00 933
15 TraesCS7A01G494300 chr7B 87.795 508 52 9 3396 3900 671710413 671710913 1.580000e-163 586
16 TraesCS7A01G494300 chr7B 84.504 484 52 15 2492 2968 677157706 677157239 1.290000e-124 457
17 TraesCS7A01G494300 chr5D 82.486 1239 150 33 913 2100 476674143 476672921 0.000000e+00 1024
18 TraesCS7A01G494300 chr5D 77.491 813 135 34 2183 2957 476672794 476671992 1.010000e-120 444
19 TraesCS7A01G494300 chr5D 80.541 185 34 2 3479 3662 539724968 539725151 1.480000e-29 141
20 TraesCS7A01G494300 chr5B 87.287 881 98 10 947 1823 584096570 584095700 0.000000e+00 994
21 TraesCS7A01G494300 chr5B 79.310 261 39 10 1851 2099 584095638 584095381 6.790000e-38 169
22 TraesCS7A01G494300 chr5B 94.444 90 5 0 2730 2819 584093986 584093897 5.330000e-29 139
23 TraesCS7A01G494300 chr5B 78.365 208 38 7 3469 3672 107950470 107950266 1.150000e-25 128
24 TraesCS7A01G494300 chr1D 83.408 223 36 1 3461 3683 60323722 60323501 5.180000e-49 206
25 TraesCS7A01G494300 chr1A 81.092 238 38 7 3463 3697 511490016 511489783 2.430000e-42 183
26 TraesCS7A01G494300 chr2B 83.333 168 28 0 3517 3684 317188858 317188691 5.290000e-34 156
27 TraesCS7A01G494300 chr2D 79.204 226 43 4 3462 3684 378360299 378360075 1.900000e-33 154
28 TraesCS7A01G494300 chr3B 78.125 224 42 6 3460 3681 643309092 643308874 6.890000e-28 135


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G494300 chr7A 682889340 682893292 3952 True 7300.0 7300 100.000000 1 3953 1 chr7A.!!$R2 3952
1 TraesCS7A01G494300 chr7A 690532236 690534205 1969 False 1988.0 1988 85.040000 978 2965 1 chr7A.!!$F1 1987
2 TraesCS7A01G494300 chr7A 687953113 687955091 1978 False 932.0 1029 85.297500 989 2957 2 chr7A.!!$F2 1968
3 TraesCS7A01G494300 chr7D 594986778 594988774 1996 False 1818.0 1818 83.708000 989 2957 1 chr7D.!!$F1 1968
4 TraesCS7A01G494300 chr7D 591803898 591807262 3364 True 1729.0 2499 88.022000 94 3122 2 chr7D.!!$R2 3028
5 TraesCS7A01G494300 chr7D 598251076 598253172 2096 True 1058.5 1090 86.877000 948 2968 2 chr7D.!!$R3 2020
6 TraesCS7A01G494300 chr7D 591787851 591788682 831 True 374.5 518 86.315000 3195 3908 2 chr7D.!!$R1 713
7 TraesCS7A01G494300 chr7B 666683426 666685408 1982 True 1844.0 1844 83.980000 989 2957 1 chr7B.!!$R1 1968
8 TraesCS7A01G494300 chr7B 677113547 677115642 2095 True 980.0 1027 85.596500 963 2969 2 chr7B.!!$R3 2006
9 TraesCS7A01G494300 chr7B 671710413 671710913 500 False 586.0 586 87.795000 3396 3900 1 chr7B.!!$F1 504
10 TraesCS7A01G494300 chr5D 476671992 476674143 2151 True 734.0 1024 79.988500 913 2957 2 chr5D.!!$R1 2044
11 TraesCS7A01G494300 chr5B 584093897 584096570 2673 True 434.0 994 87.013667 947 2819 3 chr5B.!!$R2 1872

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
600 601 0.037590 AGATACAACTTTGCCCGCCA 59.962 50.0 0.0 0.0 0.0 5.69 F
833 834 0.320683 CAGTCTCAATCACCGCACCA 60.321 55.0 0.0 0.0 0.0 4.17 F
935 936 0.474660 ACCCTGCTTCCTCTGTTCCT 60.475 55.0 0.0 0.0 0.0 3.36 F
2163 2697 0.610174 TGCTGATGGGTGTCTGTCTC 59.390 55.0 0.0 0.0 0.0 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1666 1997 0.830444 AGCCTCGTGTACAGGGACAA 60.830 55.000 15.15 0.00 0.00 3.18 R
2827 4167 0.733566 GCTGCGCAAATTGCAAGCTA 60.734 50.000 25.88 10.71 45.36 3.32 R
2906 4291 4.853924 AACACCATGTCTTTTGCCTTAG 57.146 40.909 0.00 0.00 0.00 2.18 R
2984 4380 0.171903 CCTCGAAGCAAATTGGCCTG 59.828 55.000 3.32 0.00 0.00 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.784701 ACAGACATAACACCGAGCTAG 57.215 47.619 0.00 0.00 0.00 3.42
23 24 3.353557 ACAGACATAACACCGAGCTAGA 58.646 45.455 0.00 0.00 0.00 2.43
24 25 3.954904 ACAGACATAACACCGAGCTAGAT 59.045 43.478 0.00 0.00 0.00 1.98
25 26 5.131067 ACAGACATAACACCGAGCTAGATA 58.869 41.667 0.00 0.00 0.00 1.98
26 27 5.593095 ACAGACATAACACCGAGCTAGATAA 59.407 40.000 0.00 0.00 0.00 1.75
27 28 6.096423 ACAGACATAACACCGAGCTAGATAAA 59.904 38.462 0.00 0.00 0.00 1.40
28 29 6.978659 CAGACATAACACCGAGCTAGATAAAA 59.021 38.462 0.00 0.00 0.00 1.52
29 30 6.979238 AGACATAACACCGAGCTAGATAAAAC 59.021 38.462 0.00 0.00 0.00 2.43
30 31 6.636705 ACATAACACCGAGCTAGATAAAACA 58.363 36.000 0.00 0.00 0.00 2.83
31 32 7.101054 ACATAACACCGAGCTAGATAAAACAA 58.899 34.615 0.00 0.00 0.00 2.83
32 33 7.769044 ACATAACACCGAGCTAGATAAAACAAT 59.231 33.333 0.00 0.00 0.00 2.71
33 34 8.612619 CATAACACCGAGCTAGATAAAACAATT 58.387 33.333 0.00 0.00 0.00 2.32
34 35 7.448748 AACACCGAGCTAGATAAAACAATTT 57.551 32.000 0.00 0.00 0.00 1.82
35 36 7.073342 ACACCGAGCTAGATAAAACAATTTC 57.927 36.000 0.00 0.00 0.00 2.17
36 37 6.879458 ACACCGAGCTAGATAAAACAATTTCT 59.121 34.615 0.00 0.00 0.00 2.52
37 38 8.038944 ACACCGAGCTAGATAAAACAATTTCTA 58.961 33.333 0.00 0.00 0.00 2.10
38 39 9.046296 CACCGAGCTAGATAAAACAATTTCTAT 57.954 33.333 0.00 0.00 0.00 1.98
63 64 3.981211 TCAAAAGCAAAGATCACAAGGC 58.019 40.909 0.00 0.00 0.00 4.35
64 65 3.384146 TCAAAAGCAAAGATCACAAGGCA 59.616 39.130 0.00 0.00 0.00 4.75
65 66 4.039488 TCAAAAGCAAAGATCACAAGGCAT 59.961 37.500 0.00 0.00 0.00 4.40
66 67 3.863142 AAGCAAAGATCACAAGGCATC 57.137 42.857 0.00 0.00 0.00 3.91
67 68 2.097825 AGCAAAGATCACAAGGCATCC 58.902 47.619 0.00 0.00 0.00 3.51
68 69 1.820519 GCAAAGATCACAAGGCATCCA 59.179 47.619 0.00 0.00 0.00 3.41
69 70 2.231964 GCAAAGATCACAAGGCATCCAA 59.768 45.455 0.00 0.00 0.00 3.53
70 71 3.841643 CAAAGATCACAAGGCATCCAAC 58.158 45.455 0.00 0.00 0.00 3.77
71 72 2.885135 AGATCACAAGGCATCCAACA 57.115 45.000 0.00 0.00 0.00 3.33
72 73 2.440409 AGATCACAAGGCATCCAACAC 58.560 47.619 0.00 0.00 0.00 3.32
73 74 2.161855 GATCACAAGGCATCCAACACA 58.838 47.619 0.00 0.00 0.00 3.72
74 75 1.317613 TCACAAGGCATCCAACACAC 58.682 50.000 0.00 0.00 0.00 3.82
75 76 1.133823 TCACAAGGCATCCAACACACT 60.134 47.619 0.00 0.00 0.00 3.55
76 77 2.105649 TCACAAGGCATCCAACACACTA 59.894 45.455 0.00 0.00 0.00 2.74
77 78 3.084039 CACAAGGCATCCAACACACTAT 58.916 45.455 0.00 0.00 0.00 2.12
78 79 4.019771 TCACAAGGCATCCAACACACTATA 60.020 41.667 0.00 0.00 0.00 1.31
79 80 4.333649 CACAAGGCATCCAACACACTATAG 59.666 45.833 0.00 0.00 0.00 1.31
80 81 4.019321 ACAAGGCATCCAACACACTATAGT 60.019 41.667 0.00 0.00 0.00 2.12
81 82 4.844349 AGGCATCCAACACACTATAGTT 57.156 40.909 1.56 0.00 0.00 2.24
82 83 5.179452 AGGCATCCAACACACTATAGTTT 57.821 39.130 1.56 0.00 0.00 2.66
83 84 4.943705 AGGCATCCAACACACTATAGTTTG 59.056 41.667 15.88 15.88 0.00 2.93
84 85 4.941263 GGCATCCAACACACTATAGTTTGA 59.059 41.667 22.72 3.72 30.77 2.69
85 86 5.414454 GGCATCCAACACACTATAGTTTGAA 59.586 40.000 22.72 1.89 30.77 2.69
86 87 6.403636 GGCATCCAACACACTATAGTTTGAAG 60.404 42.308 22.72 14.43 30.77 3.02
87 88 6.546395 CATCCAACACACTATAGTTTGAAGC 58.454 40.000 22.72 0.00 30.77 3.86
88 89 5.865085 TCCAACACACTATAGTTTGAAGCT 58.135 37.500 22.72 0.66 30.77 3.74
89 90 6.999950 TCCAACACACTATAGTTTGAAGCTA 58.000 36.000 22.72 4.49 30.77 3.32
90 91 7.446769 TCCAACACACTATAGTTTGAAGCTAA 58.553 34.615 22.72 3.63 30.77 3.09
91 92 7.602644 TCCAACACACTATAGTTTGAAGCTAAG 59.397 37.037 22.72 2.51 30.77 2.18
92 93 7.148407 CCAACACACTATAGTTTGAAGCTAAGG 60.148 40.741 22.72 10.63 30.77 2.69
131 132 7.927048 TGTCAATCTGATGATCAATGAATGAC 58.073 34.615 23.02 23.02 41.93 3.06
132 133 7.554835 TGTCAATCTGATGATCAATGAATGACA 59.445 33.333 25.76 25.76 38.26 3.58
144 145 9.499585 GATCAATGAATGACACAAGTTCATTAG 57.500 33.333 12.24 8.67 45.64 1.73
146 147 8.506437 TCAATGAATGACACAAGTTCATTAGTC 58.494 33.333 12.24 0.00 45.64 2.59
147 148 8.509690 CAATGAATGACACAAGTTCATTAGTCT 58.490 33.333 12.24 0.00 45.64 3.24
148 149 7.425577 TGAATGACACAAGTTCATTAGTCTG 57.574 36.000 0.00 0.00 34.64 3.51
157 158 8.607459 CACAAGTTCATTAGTCTGATTACATCC 58.393 37.037 0.00 0.00 0.00 3.51
162 163 6.513180 TCATTAGTCTGATTACATCCCGTTC 58.487 40.000 0.00 0.00 0.00 3.95
164 165 4.657436 AGTCTGATTACATCCCGTTCTC 57.343 45.455 0.00 0.00 0.00 2.87
178 179 3.435671 CCCGTTCTCCATTCAACACTTAC 59.564 47.826 0.00 0.00 0.00 2.34
184 185 5.875224 TCTCCATTCAACACTTACAATCCA 58.125 37.500 0.00 0.00 0.00 3.41
191 192 1.695242 ACACTTACAATCCACCACCGA 59.305 47.619 0.00 0.00 0.00 4.69
224 225 5.104318 AGGGTTGTAGAAATCAGATCTTCCC 60.104 44.000 0.00 0.00 0.00 3.97
250 251 8.713765 GCATAACGAGTCATTGGTAATATTTG 57.286 34.615 0.00 0.00 0.00 2.32
256 257 9.405587 ACGAGTCATTGGTAATATTTGTTTTTG 57.594 29.630 0.00 0.00 0.00 2.44
329 330 3.560636 TTAGAGCTTGCATAGGGTTCC 57.439 47.619 0.00 0.00 0.00 3.62
332 333 1.210478 GAGCTTGCATAGGGTTCCAGA 59.790 52.381 0.00 0.00 0.00 3.86
358 359 0.250727 TTGCCTACTCAACACAGGGC 60.251 55.000 0.00 0.00 39.93 5.19
363 364 1.207329 CTACTCAACACAGGGCCTACC 59.793 57.143 5.28 0.00 40.67 3.18
366 367 0.766674 TCAACACAGGGCCTACCACT 60.767 55.000 5.28 0.00 43.89 4.00
367 368 0.606401 CAACACAGGGCCTACCACTG 60.606 60.000 5.28 3.13 43.89 3.66
368 369 0.766674 AACACAGGGCCTACCACTGA 60.767 55.000 5.28 0.00 43.89 3.41
369 370 0.766674 ACACAGGGCCTACCACTGAA 60.767 55.000 5.28 0.00 43.89 3.02
400 401 1.228094 TTGGCTTCATGGTGCGTGA 60.228 52.632 0.00 0.00 0.00 4.35
413 414 2.290641 GGTGCGTGATATTTGATGGGTC 59.709 50.000 0.00 0.00 0.00 4.46
419 420 3.945285 GTGATATTTGATGGGTCGTGGTT 59.055 43.478 0.00 0.00 0.00 3.67
429 430 2.105766 GGGTCGTGGTTGGTAGACTAT 58.894 52.381 0.00 0.00 34.34 2.12
430 431 2.100418 GGGTCGTGGTTGGTAGACTATC 59.900 54.545 0.00 0.00 34.34 2.08
444 445 1.869767 GACTATCGAGGCTTGCAATGG 59.130 52.381 0.00 0.00 0.00 3.16
458 459 0.108041 CAATGGGAATTGCCTGGTGC 60.108 55.000 17.69 0.00 41.77 5.01
485 486 1.153309 TGATGTGCGCTCCATCTGG 60.153 57.895 28.40 0.00 39.54 3.86
491 492 4.018609 CGCTCCATCTGGTTAGCG 57.981 61.111 15.22 15.22 46.87 4.26
505 506 2.356695 GGTTAGCGCGAATAACCCAAAT 59.643 45.455 29.32 0.00 44.28 2.32
512 513 3.702330 GCGAATAACCCAAATAGCAACC 58.298 45.455 0.00 0.00 0.00 3.77
518 519 2.802719 ACCCAAATAGCAACCGACAAT 58.197 42.857 0.00 0.00 0.00 2.71
531 532 7.653647 AGCAACCGACAATATTTGTTTTAAGA 58.346 30.769 0.00 0.00 45.52 2.10
566 567 3.583054 CCATGTGGTCAGCAATCCT 57.417 52.632 0.00 0.00 0.00 3.24
583 584 8.843262 CAGCAATCCTGAATATGAAATACAAGA 58.157 33.333 0.00 0.00 44.64 3.02
596 597 6.919721 TGAAATACAAGATACAACTTTGCCC 58.080 36.000 0.00 0.00 0.00 5.36
597 598 5.560966 AATACAAGATACAACTTTGCCCG 57.439 39.130 0.00 0.00 0.00 6.13
598 599 1.539827 ACAAGATACAACTTTGCCCGC 59.460 47.619 0.00 0.00 0.00 6.13
599 600 1.135402 CAAGATACAACTTTGCCCGCC 60.135 52.381 0.00 0.00 0.00 6.13
600 601 0.037590 AGATACAACTTTGCCCGCCA 59.962 50.000 0.00 0.00 0.00 5.69
654 655 4.219288 AGCTTGCTTTTGGAAACATCCTAG 59.781 41.667 0.00 0.00 42.32 3.02
670 671 2.901839 TCCTAGTAAGAACACCCACCAC 59.098 50.000 0.00 0.00 0.00 4.16
696 697 7.552687 CACCCTGTTAATCTATGAGTTGCTTTA 59.447 37.037 0.00 0.00 0.00 1.85
713 714 4.202070 TGCTTTAATTAGTTAATGCGGCCC 60.202 41.667 17.83 0.00 46.14 5.80
717 718 4.810191 AATTAGTTAATGCGGCCCAAAA 57.190 36.364 0.00 0.00 0.00 2.44
755 756 4.985413 AGTTGCATTCCACGTTATCATTG 58.015 39.130 0.00 0.00 0.00 2.82
771 772 2.432510 TCATTGTTTTTGGCGGGAAAGT 59.567 40.909 0.00 0.00 0.00 2.66
787 788 7.201750 GGCGGGAAAGTTATATTTCACATTGTA 60.202 37.037 2.72 0.00 41.73 2.41
788 789 7.642586 GCGGGAAAGTTATATTTCACATTGTAC 59.357 37.037 2.72 0.00 41.73 2.90
789 790 8.670135 CGGGAAAGTTATATTTCACATTGTACA 58.330 33.333 0.00 0.00 41.73 2.90
806 807 5.362105 TGTACAGTAGGTTTCTGTTTGGT 57.638 39.130 3.98 0.00 42.50 3.67
814 815 3.314357 AGGTTTCTGTTTGGTTTACTCGC 59.686 43.478 0.00 0.00 0.00 5.03
815 816 3.065648 GGTTTCTGTTTGGTTTACTCGCA 59.934 43.478 0.00 0.00 0.00 5.10
816 817 4.279659 GTTTCTGTTTGGTTTACTCGCAG 58.720 43.478 0.00 0.00 0.00 5.18
822 823 3.462483 TTGGTTTACTCGCAGTCTCAA 57.538 42.857 0.00 0.00 0.00 3.02
823 824 3.678056 TGGTTTACTCGCAGTCTCAAT 57.322 42.857 0.00 0.00 0.00 2.57
833 834 0.320683 CAGTCTCAATCACCGCACCA 60.321 55.000 0.00 0.00 0.00 4.17
851 852 0.792640 CAACGTCTAGTGCTTGGCAG 59.207 55.000 0.00 0.00 40.08 4.85
864 865 2.143122 CTTGGCAGCGACTGTAGAAAA 58.857 47.619 8.32 0.00 33.43 2.29
867 868 2.289382 TGGCAGCGACTGTAGAAAATCA 60.289 45.455 8.32 0.00 33.43 2.57
868 869 2.094417 GGCAGCGACTGTAGAAAATCAC 59.906 50.000 8.32 0.00 33.43 3.06
889 890 9.840427 AATCACTACAAATGTAACATTTGCTAC 57.160 29.630 20.91 4.97 41.36 3.58
903 904 1.079819 GCTACGCAGCTTCCACAGA 60.080 57.895 0.00 0.00 44.93 3.41
909 910 1.818642 GCAGCTTCCACAGATTCTGT 58.181 50.000 13.61 13.61 46.51 3.41
916 917 4.318332 CTTCCACAGATTCTGTTGCAGTA 58.682 43.478 16.64 0.00 42.59 2.74
931 932 1.270907 CAGTACCCTGCTTCCTCTGT 58.729 55.000 0.00 0.00 0.00 3.41
932 933 1.625818 CAGTACCCTGCTTCCTCTGTT 59.374 52.381 0.00 0.00 0.00 3.16
933 934 1.903183 AGTACCCTGCTTCCTCTGTTC 59.097 52.381 0.00 0.00 0.00 3.18
934 935 1.066071 GTACCCTGCTTCCTCTGTTCC 60.066 57.143 0.00 0.00 0.00 3.62
935 936 0.474660 ACCCTGCTTCCTCTGTTCCT 60.475 55.000 0.00 0.00 0.00 3.36
938 939 1.338579 CCTGCTTCCTCTGTTCCTCAC 60.339 57.143 0.00 0.00 0.00 3.51
939 940 1.345741 CTGCTTCCTCTGTTCCTCACA 59.654 52.381 0.00 0.00 0.00 3.58
940 941 1.768275 TGCTTCCTCTGTTCCTCACAA 59.232 47.619 0.00 0.00 33.87 3.33
941 942 2.373169 TGCTTCCTCTGTTCCTCACAAT 59.627 45.455 0.00 0.00 33.87 2.71
942 943 3.006247 GCTTCCTCTGTTCCTCACAATC 58.994 50.000 0.00 0.00 33.87 2.67
943 944 3.307339 GCTTCCTCTGTTCCTCACAATCT 60.307 47.826 0.00 0.00 33.87 2.40
945 946 5.569630 GCTTCCTCTGTTCCTCACAATCTTA 60.570 44.000 0.00 0.00 33.87 2.10
956 1276 5.425217 TCCTCACAATCTTATTACTCCAGCA 59.575 40.000 0.00 0.00 0.00 4.41
991 1311 4.312443 CTGAAGGCAGTAAACCGTAAAGA 58.688 43.478 0.00 0.00 37.37 2.52
999 1319 5.618561 CAGTAAACCGTAAAGATGACAAGC 58.381 41.667 0.00 0.00 0.00 4.01
1009 1331 3.069079 AGATGACAAGCATGCAGAAGT 57.931 42.857 21.98 12.11 37.34 3.01
1409 1740 1.456705 GGATCCTCCTGCTCCTCGT 60.457 63.158 3.84 0.00 32.53 4.18
1578 1909 0.957395 CGCTCAGCCACATCCTTGTT 60.957 55.000 0.00 0.00 32.34 2.83
1666 1997 2.034066 CCACGAACCTGGCCATGT 59.966 61.111 5.51 6.95 0.00 3.21
1743 2074 1.136329 TGGAGGCCTTCAAGGAGCTT 61.136 55.000 12.80 0.00 37.67 3.74
1806 2145 3.593442 TGGTGAGACAAAACCCTCAAT 57.407 42.857 0.00 0.00 40.64 2.57
1809 2148 5.640147 TGGTGAGACAAAACCCTCAATAAT 58.360 37.500 0.00 0.00 40.64 1.28
1823 2168 9.462606 AACCCTCAATAATTCTTCTTAATCGTT 57.537 29.630 0.00 0.00 0.00 3.85
1830 2175 8.682936 ATAATTCTTCTTAATCGTTGGATGCT 57.317 30.769 0.00 0.00 31.83 3.79
1831 2176 9.778741 ATAATTCTTCTTAATCGTTGGATGCTA 57.221 29.630 0.00 0.00 31.83 3.49
1841 2266 3.639561 TCGTTGGATGCTAGCATACCTAA 59.360 43.478 32.43 20.46 36.46 2.69
1844 2269 5.120830 CGTTGGATGCTAGCATACCTAATTC 59.879 44.000 32.43 17.89 36.46 2.17
1846 2271 6.439636 TGGATGCTAGCATACCTAATTCTT 57.560 37.500 32.43 8.09 36.46 2.52
1847 2272 6.467677 TGGATGCTAGCATACCTAATTCTTC 58.532 40.000 32.43 16.05 36.46 2.87
1880 2335 1.890876 TGGAATGGTGGTCGTTTGAG 58.109 50.000 0.00 0.00 0.00 3.02
1937 2392 7.490657 TCCTAAGCTTGAAACCTCAGTATTA 57.509 36.000 9.86 0.00 31.69 0.98
1948 2403 8.088365 TGAAACCTCAGTATTATCGATATGGTG 58.912 37.037 5.84 2.53 0.00 4.17
1970 2448 6.264518 GGTGATCAAACCAAGAGACCTTTTTA 59.735 38.462 0.00 0.00 40.22 1.52
1971 2449 7.039714 GGTGATCAAACCAAGAGACCTTTTTAT 60.040 37.037 0.00 0.00 40.22 1.40
2014 2513 1.573108 TGCCTTCCCCTACTTCTCTG 58.427 55.000 0.00 0.00 0.00 3.35
2018 2517 3.627747 GCCTTCCCCTACTTCTCTGAGTA 60.628 52.174 4.32 0.00 0.00 2.59
2034 2536 8.429493 TCTCTGAGTATTGCATTACTGAATTG 57.571 34.615 22.49 9.55 32.59 2.32
2075 2577 3.021695 CTCTCATGTTCATGGTGCCATT 58.978 45.455 12.02 0.00 33.90 3.16
2076 2578 2.756207 TCTCATGTTCATGGTGCCATTG 59.244 45.455 12.02 0.00 33.90 2.82
2134 2663 4.507388 TCAAACAAAAATGCTTAGTGCTGC 59.493 37.500 0.00 0.00 43.37 5.25
2159 2693 4.341366 TGTATATGCTGATGGGTGTCTG 57.659 45.455 0.00 0.00 0.00 3.51
2161 2695 2.988010 TATGCTGATGGGTGTCTGTC 57.012 50.000 0.00 0.00 0.00 3.51
2162 2696 1.283347 ATGCTGATGGGTGTCTGTCT 58.717 50.000 0.00 0.00 0.00 3.41
2163 2697 0.610174 TGCTGATGGGTGTCTGTCTC 59.390 55.000 0.00 0.00 0.00 3.36
2165 2699 1.405256 GCTGATGGGTGTCTGTCTCTG 60.405 57.143 0.00 0.00 0.00 3.35
2166 2700 0.610174 TGATGGGTGTCTGTCTCTGC 59.390 55.000 0.00 0.00 0.00 4.26
2167 2701 0.901124 GATGGGTGTCTGTCTCTGCT 59.099 55.000 0.00 0.00 0.00 4.24
2168 2702 1.277557 GATGGGTGTCTGTCTCTGCTT 59.722 52.381 0.00 0.00 0.00 3.91
2169 2703 1.131638 TGGGTGTCTGTCTCTGCTTT 58.868 50.000 0.00 0.00 0.00 3.51
2170 2704 1.490490 TGGGTGTCTGTCTCTGCTTTT 59.510 47.619 0.00 0.00 0.00 2.27
2175 2719 3.879892 GTGTCTGTCTCTGCTTTTTCCTT 59.120 43.478 0.00 0.00 0.00 3.36
2179 2723 5.240403 GTCTGTCTCTGCTTTTTCCTTCATT 59.760 40.000 0.00 0.00 0.00 2.57
2181 3155 5.835257 TGTCTCTGCTTTTTCCTTCATTTG 58.165 37.500 0.00 0.00 0.00 2.32
2193 3178 3.119884 TCCTTCATTTGCAATACAGCACG 60.120 43.478 0.00 0.00 45.61 5.34
2519 3747 6.487668 ACATGATCTTTGTCTGAACATCACAA 59.512 34.615 0.00 0.00 34.73 3.33
2659 3973 4.139786 GGGATGGTACGTACTATGTCAGA 58.860 47.826 26.79 2.31 0.00 3.27
2678 3993 6.012658 TCAGAATGAACTTAACATTGTGCC 57.987 37.500 0.00 0.00 45.97 5.01
2754 4094 3.521796 GGCTTTGGCTCGGCATCC 61.522 66.667 0.00 0.00 38.73 3.51
2821 4161 7.438459 CGTACTTTCTATAAACTGGGAGAATGG 59.562 40.741 0.00 0.00 31.01 3.16
2823 4163 6.447084 ACTTTCTATAAACTGGGAGAATGGGA 59.553 38.462 0.00 0.00 31.01 4.37
2827 4167 8.757307 TCTATAAACTGGGAGAATGGGATAAT 57.243 34.615 0.00 0.00 0.00 1.28
2906 4291 6.447162 CCCTCTTTATTTGGTTTCAGTCAAC 58.553 40.000 0.00 0.00 0.00 3.18
2944 4329 3.006644 GGTGTTAGGAACTTCTCTTCCGT 59.993 47.826 0.00 0.00 44.12 4.69
2965 4350 0.543277 TGCATGAAGATCCTTCGGCT 59.457 50.000 17.63 0.07 0.00 5.52
2967 4352 1.473965 GCATGAAGATCCTTCGGCTGA 60.474 52.381 0.00 0.00 0.00 4.26
2971 4367 2.237143 TGAAGATCCTTCGGCTGATTGT 59.763 45.455 0.00 0.00 0.00 2.71
2973 4369 4.081142 TGAAGATCCTTCGGCTGATTGTTA 60.081 41.667 0.00 0.00 0.00 2.41
2979 4375 4.081365 TCCTTCGGCTGATTGTTATGTGTA 60.081 41.667 0.00 0.00 0.00 2.90
2984 4380 6.213677 TCGGCTGATTGTTATGTGTATAGAC 58.786 40.000 0.00 0.00 0.00 2.59
3004 4400 0.038166 AGGCCAATTTGCTTCGAGGA 59.962 50.000 5.01 0.00 0.00 3.71
3006 4402 1.168714 GCCAATTTGCTTCGAGGAGT 58.831 50.000 0.00 0.00 0.00 3.85
3010 4406 0.693049 ATTTGCTTCGAGGAGTGGGT 59.307 50.000 0.00 0.00 0.00 4.51
3011 4407 1.344065 TTTGCTTCGAGGAGTGGGTA 58.656 50.000 0.00 0.00 0.00 3.69
3012 4408 0.895530 TTGCTTCGAGGAGTGGGTAG 59.104 55.000 0.00 0.00 0.00 3.18
3013 4409 0.039180 TGCTTCGAGGAGTGGGTAGA 59.961 55.000 0.00 0.00 0.00 2.59
3014 4410 1.183549 GCTTCGAGGAGTGGGTAGAA 58.816 55.000 0.00 0.00 0.00 2.10
3041 4437 9.592196 AATGTGAATATTGTGGGCTAAGATTAT 57.408 29.630 0.00 0.00 0.00 1.28
3043 4439 9.725019 TGTGAATATTGTGGGCTAAGATTATAG 57.275 33.333 0.00 0.00 0.00 1.31
3047 4443 9.726438 AATATTGTGGGCTAAGATTATAGTGTC 57.274 33.333 0.00 0.00 0.00 3.67
3055 4451 6.226787 GCTAAGATTATAGTGTCACCAGCAT 58.773 40.000 0.00 0.00 0.00 3.79
3076 4472 9.961265 CAGCATCACTTGATATTGTCAATTATT 57.039 29.630 2.79 0.00 45.36 1.40
3158 4554 7.792374 TTCCTATTGACTATTTCTGTCATGC 57.208 36.000 0.00 0.00 42.95 4.06
3159 4555 5.985530 TCCTATTGACTATTTCTGTCATGCG 59.014 40.000 0.00 0.00 42.95 4.73
3160 4556 5.178252 CCTATTGACTATTTCTGTCATGCGG 59.822 44.000 0.00 0.00 42.95 5.69
3161 4557 3.885724 TGACTATTTCTGTCATGCGGA 57.114 42.857 0.00 0.00 39.23 5.54
3162 4558 4.200838 TGACTATTTCTGTCATGCGGAA 57.799 40.909 7.15 7.15 39.23 4.30
3163 4559 4.769688 TGACTATTTCTGTCATGCGGAAT 58.230 39.130 10.79 1.66 41.66 3.01
3164 4560 5.912892 TGACTATTTCTGTCATGCGGAATA 58.087 37.500 10.79 2.56 41.66 1.75
3165 4561 6.524734 TGACTATTTCTGTCATGCGGAATAT 58.475 36.000 10.79 9.85 41.66 1.28
3166 4562 7.666623 TGACTATTTCTGTCATGCGGAATATA 58.333 34.615 10.79 10.25 41.66 0.86
3167 4563 8.314021 TGACTATTTCTGTCATGCGGAATATAT 58.686 33.333 10.79 6.14 41.66 0.86
3168 4564 8.484641 ACTATTTCTGTCATGCGGAATATATG 57.515 34.615 10.79 0.00 41.66 1.78
3169 4565 5.611796 TTTCTGTCATGCGGAATATATGC 57.388 39.130 10.79 0.00 41.66 3.14
3170 4566 4.541973 TCTGTCATGCGGAATATATGCT 57.458 40.909 0.00 0.00 0.00 3.79
3171 4567 4.898320 TCTGTCATGCGGAATATATGCTT 58.102 39.130 0.00 0.00 0.00 3.91
3172 4568 6.036577 TCTGTCATGCGGAATATATGCTTA 57.963 37.500 0.00 0.00 0.00 3.09
3173 4569 6.463360 TCTGTCATGCGGAATATATGCTTAA 58.537 36.000 0.00 0.00 0.00 1.85
3174 4570 7.105588 TCTGTCATGCGGAATATATGCTTAAT 58.894 34.615 0.00 0.00 0.00 1.40
3175 4571 8.257306 TCTGTCATGCGGAATATATGCTTAATA 58.743 33.333 0.00 0.00 0.00 0.98
3176 4572 8.962884 TGTCATGCGGAATATATGCTTAATAT 57.037 30.769 0.00 0.00 35.55 1.28
3214 4610 4.023107 GCATAGTTGGAGATGTAGAGCGTA 60.023 45.833 0.00 0.00 0.00 4.42
3254 4650 4.574421 CACAATGTCACTGTAAGGAACACA 59.426 41.667 0.00 0.00 39.30 3.72
3259 4657 4.058817 GTCACTGTAAGGAACACAGGAAG 58.941 47.826 7.35 0.00 46.25 3.46
3266 4664 1.282875 GAACACAGGAAGTTGCCGC 59.717 57.895 0.00 0.00 0.00 6.53
3267 4665 1.152963 AACACAGGAAGTTGCCGCT 60.153 52.632 0.00 0.00 0.00 5.52
3282 4680 3.418047 TGCCGCTGATAGCACTAGTATA 58.582 45.455 0.00 0.00 42.58 1.47
3296 4694 8.932434 AGCACTAGTATATCTCTGAATCTGAA 57.068 34.615 0.00 0.00 0.00 3.02
3298 4696 9.571810 GCACTAGTATATCTCTGAATCTGAATG 57.428 37.037 0.00 0.00 0.00 2.67
3318 4716 3.300388 TGAAGTAGCTGATACAGGGAGG 58.700 50.000 5.81 0.00 36.79 4.30
3326 4724 6.120507 AGCTGATACAGGGAGGAAATATTC 57.879 41.667 0.00 0.00 31.21 1.75
3327 4725 4.932200 GCTGATACAGGGAGGAAATATTCG 59.068 45.833 0.00 0.00 31.21 3.34
3333 4731 4.101741 ACAGGGAGGAAATATTCGGAGAAG 59.898 45.833 0.00 0.00 45.90 2.85
3334 4732 3.648545 AGGGAGGAAATATTCGGAGAAGG 59.351 47.826 0.00 0.00 45.90 3.46
3343 4741 0.614979 TTCGGAGAAGGGAGACAGGG 60.615 60.000 0.00 0.00 45.90 4.45
3348 4746 0.252927 AGAAGGGAGACAGGGGAAGG 60.253 60.000 0.00 0.00 0.00 3.46
3352 4750 0.689412 GGGAGACAGGGGAAGGAGAG 60.689 65.000 0.00 0.00 0.00 3.20
3353 4751 0.689412 GGAGACAGGGGAAGGAGAGG 60.689 65.000 0.00 0.00 0.00 3.69
3354 4752 0.689412 GAGACAGGGGAAGGAGAGGG 60.689 65.000 0.00 0.00 0.00 4.30
3417 4952 2.211806 GCAGCTGCTCCTCAGAAATAG 58.788 52.381 31.33 0.00 45.72 1.73
3421 4956 3.774216 AGCTGCTCCTCAGAAATAGAGTT 59.226 43.478 0.00 0.00 45.72 3.01
3422 4957 3.870419 GCTGCTCCTCAGAAATAGAGTTG 59.130 47.826 0.00 0.00 45.72 3.16
3435 4970 9.774742 CAGAAATAGAGTTGCCAATAAGTTAAC 57.225 33.333 0.00 0.00 0.00 2.01
3436 4971 9.515226 AGAAATAGAGTTGCCAATAAGTTAACA 57.485 29.630 8.61 0.00 0.00 2.41
3458 4993 3.803340 ACCCCTAGAAAGAGGTCAATCA 58.197 45.455 0.00 0.00 34.45 2.57
3475 5013 5.823045 GTCAATCAAAAGGACCCGAATATCT 59.177 40.000 0.00 0.00 0.00 1.98
3479 5017 4.654262 TCAAAAGGACCCGAATATCTAGCT 59.346 41.667 0.00 0.00 0.00 3.32
3526 5064 6.354080 CAAATCAAACGTTTTTCATCGCAAT 58.646 32.000 11.66 0.00 0.00 3.56
3532 5070 3.489047 ACGTTTTTCATCGCAATTTGTGG 59.511 39.130 9.91 0.00 0.00 4.17
3535 5073 4.582701 TTTTCATCGCAATTTGTGGTCT 57.417 36.364 9.91 0.00 0.00 3.85
3537 5075 3.829886 TCATCGCAATTTGTGGTCTTC 57.170 42.857 9.91 0.00 0.00 2.87
3545 5083 3.981071 ATTTGTGGTCTTCGAGGATGA 57.019 42.857 0.00 0.00 0.00 2.92
3552 5090 3.071023 TGGTCTTCGAGGATGACAAGTTT 59.929 43.478 0.00 0.00 38.11 2.66
3557 5095 6.089685 GTCTTCGAGGATGACAAGTTTAGTTC 59.910 42.308 0.00 0.00 36.92 3.01
3561 5099 4.315803 AGGATGACAAGTTTAGTTCACGG 58.684 43.478 0.00 0.00 0.00 4.94
3567 5105 2.811431 CAAGTTTAGTTCACGGGCATGA 59.189 45.455 0.00 0.00 0.00 3.07
3574 5112 1.812571 GTTCACGGGCATGACAAATCT 59.187 47.619 0.00 0.00 0.00 2.40
3581 5119 2.846039 GCATGACAAATCTGCCTCAG 57.154 50.000 0.00 0.00 0.00 3.35
3582 5120 1.202268 GCATGACAAATCTGCCTCAGC 60.202 52.381 0.00 0.00 40.48 4.26
3587 5125 3.015327 GACAAATCTGCCTCAGCTCATT 58.985 45.455 0.00 0.00 40.80 2.57
3616 5154 3.255642 ACAGAAAATTGCCGTGCTTGTAT 59.744 39.130 0.00 0.00 0.00 2.29
3630 5168 7.678690 GCCGTGCTTGTATACTAAATTTGTCAT 60.679 37.037 4.17 0.00 0.00 3.06
3651 5189 3.472652 TCCTCGCGCCAATATAAATTGT 58.527 40.909 0.00 0.00 40.84 2.71
3662 5200 8.867935 CGCCAATATAAATTGTCATGAAAAACA 58.132 29.630 1.55 0.00 40.84 2.83
3684 5222 8.432110 AACATTTGTTTTCCCATGTCTAAAAC 57.568 30.769 15.34 15.34 41.35 2.43
3688 5226 9.625747 ATTTGTTTTCCCATGTCTAAAACATTT 57.374 25.926 21.17 13.65 46.73 2.32
3690 5228 9.757227 TTGTTTTCCCATGTCTAAAACATTTAG 57.243 29.630 21.17 3.94 46.73 1.85
3715 5253 5.294552 GTCAGACATTTCCGAAAGAATAGGG 59.705 44.000 0.00 0.00 33.44 3.53
3758 5296 1.251251 GCACAGGGAATGAGCACTTT 58.749 50.000 0.00 0.00 44.11 2.66
3769 5307 5.915196 GGAATGAGCACTTTAGACAACAAAC 59.085 40.000 0.00 0.00 0.00 2.93
3806 5344 5.275494 ACAACAGCCAACGTTTTACATAAC 58.725 37.500 0.00 0.00 0.00 1.89
3809 5348 4.577283 ACAGCCAACGTTTTACATAACACT 59.423 37.500 0.00 0.00 0.00 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 3.353557 TCTAGCTCGGTGTTATGTCTGT 58.646 45.455 0.00 0.00 0.00 3.41
3 4 4.576216 ATCTAGCTCGGTGTTATGTCTG 57.424 45.455 0.00 0.00 0.00 3.51
5 6 6.755141 TGTTTTATCTAGCTCGGTGTTATGTC 59.245 38.462 0.00 0.00 0.00 3.06
6 7 6.636705 TGTTTTATCTAGCTCGGTGTTATGT 58.363 36.000 0.00 0.00 0.00 2.29
8 9 8.732746 AATTGTTTTATCTAGCTCGGTGTTAT 57.267 30.769 0.00 0.00 0.00 1.89
10 11 7.390718 AGAAATTGTTTTATCTAGCTCGGTGTT 59.609 33.333 0.00 0.00 0.00 3.32
12 13 7.308782 AGAAATTGTTTTATCTAGCTCGGTG 57.691 36.000 0.00 0.00 0.00 4.94
25 26 9.762933 TTGCTTTTGAGCTATAGAAATTGTTTT 57.237 25.926 3.21 0.00 35.49 2.43
26 27 9.762933 TTTGCTTTTGAGCTATAGAAATTGTTT 57.237 25.926 3.21 0.00 35.49 2.83
27 28 9.415544 CTTTGCTTTTGAGCTATAGAAATTGTT 57.584 29.630 3.21 0.00 35.49 2.83
28 29 8.796475 TCTTTGCTTTTGAGCTATAGAAATTGT 58.204 29.630 3.21 0.00 35.49 2.71
29 30 9.798994 ATCTTTGCTTTTGAGCTATAGAAATTG 57.201 29.630 3.21 0.00 35.49 2.32
31 32 9.182214 TGATCTTTGCTTTTGAGCTATAGAAAT 57.818 29.630 3.21 0.00 35.49 2.17
32 33 8.454106 GTGATCTTTGCTTTTGAGCTATAGAAA 58.546 33.333 3.21 0.00 35.49 2.52
33 34 7.607607 TGTGATCTTTGCTTTTGAGCTATAGAA 59.392 33.333 3.21 0.00 35.49 2.10
34 35 7.105588 TGTGATCTTTGCTTTTGAGCTATAGA 58.894 34.615 3.21 1.19 35.49 1.98
35 36 7.312657 TGTGATCTTTGCTTTTGAGCTATAG 57.687 36.000 0.00 0.00 35.49 1.31
36 37 7.148188 CCTTGTGATCTTTGCTTTTGAGCTATA 60.148 37.037 0.00 0.00 35.49 1.31
37 38 6.349944 CCTTGTGATCTTTGCTTTTGAGCTAT 60.350 38.462 0.00 0.00 35.49 2.97
38 39 5.048504 CCTTGTGATCTTTGCTTTTGAGCTA 60.049 40.000 0.00 0.00 35.49 3.32
39 40 4.261909 CCTTGTGATCTTTGCTTTTGAGCT 60.262 41.667 0.00 0.00 35.49 4.09
40 41 3.985925 CCTTGTGATCTTTGCTTTTGAGC 59.014 43.478 0.00 0.00 0.00 4.26
41 42 3.985925 GCCTTGTGATCTTTGCTTTTGAG 59.014 43.478 0.00 0.00 0.00 3.02
42 43 3.384146 TGCCTTGTGATCTTTGCTTTTGA 59.616 39.130 0.00 0.00 0.00 2.69
43 44 3.719924 TGCCTTGTGATCTTTGCTTTTG 58.280 40.909 0.00 0.00 0.00 2.44
44 45 4.562143 GGATGCCTTGTGATCTTTGCTTTT 60.562 41.667 0.00 0.00 0.00 2.27
45 46 3.056322 GGATGCCTTGTGATCTTTGCTTT 60.056 43.478 0.00 0.00 0.00 3.51
46 47 2.494870 GGATGCCTTGTGATCTTTGCTT 59.505 45.455 0.00 0.00 0.00 3.91
47 48 2.097825 GGATGCCTTGTGATCTTTGCT 58.902 47.619 0.00 0.00 0.00 3.91
48 49 1.820519 TGGATGCCTTGTGATCTTTGC 59.179 47.619 0.00 0.00 0.00 3.68
49 50 3.256383 TGTTGGATGCCTTGTGATCTTTG 59.744 43.478 0.00 0.00 0.00 2.77
50 51 3.256631 GTGTTGGATGCCTTGTGATCTTT 59.743 43.478 0.00 0.00 0.00 2.52
51 52 2.821969 GTGTTGGATGCCTTGTGATCTT 59.178 45.455 0.00 0.00 0.00 2.40
52 53 2.224843 TGTGTTGGATGCCTTGTGATCT 60.225 45.455 0.00 0.00 0.00 2.75
53 54 2.095059 GTGTGTTGGATGCCTTGTGATC 60.095 50.000 0.00 0.00 0.00 2.92
54 55 1.888512 GTGTGTTGGATGCCTTGTGAT 59.111 47.619 0.00 0.00 0.00 3.06
55 56 1.133823 AGTGTGTTGGATGCCTTGTGA 60.134 47.619 0.00 0.00 0.00 3.58
56 57 1.321474 AGTGTGTTGGATGCCTTGTG 58.679 50.000 0.00 0.00 0.00 3.33
57 58 2.949177 TAGTGTGTTGGATGCCTTGT 57.051 45.000 0.00 0.00 0.00 3.16
58 59 4.517285 ACTATAGTGTGTTGGATGCCTTG 58.483 43.478 4.10 0.00 0.00 3.61
59 60 4.844349 ACTATAGTGTGTTGGATGCCTT 57.156 40.909 4.10 0.00 0.00 4.35
60 61 4.844349 AACTATAGTGTGTTGGATGCCT 57.156 40.909 6.06 0.00 0.00 4.75
61 62 4.941263 TCAAACTATAGTGTGTTGGATGCC 59.059 41.667 20.28 0.00 34.88 4.40
62 63 6.494893 TTCAAACTATAGTGTGTTGGATGC 57.505 37.500 20.28 0.00 34.88 3.91
63 64 6.372659 AGCTTCAAACTATAGTGTGTTGGATG 59.627 38.462 20.28 6.89 34.88 3.51
64 65 6.476378 AGCTTCAAACTATAGTGTGTTGGAT 58.524 36.000 20.28 9.41 34.88 3.41
65 66 5.865085 AGCTTCAAACTATAGTGTGTTGGA 58.135 37.500 20.28 9.24 34.88 3.53
66 67 7.148407 CCTTAGCTTCAAACTATAGTGTGTTGG 60.148 40.741 20.28 13.13 34.88 3.77
67 68 7.602644 TCCTTAGCTTCAAACTATAGTGTGTTG 59.397 37.037 20.28 14.33 34.88 3.33
68 69 7.676947 TCCTTAGCTTCAAACTATAGTGTGTT 58.323 34.615 20.28 2.96 34.88 3.32
69 70 7.241042 TCCTTAGCTTCAAACTATAGTGTGT 57.759 36.000 20.28 6.12 34.88 3.72
70 71 6.256757 GCTCCTTAGCTTCAAACTATAGTGTG 59.743 42.308 15.93 15.93 45.85 3.82
71 72 6.342111 GCTCCTTAGCTTCAAACTATAGTGT 58.658 40.000 6.06 0.00 45.85 3.55
72 73 6.836577 GCTCCTTAGCTTCAAACTATAGTG 57.163 41.667 6.06 0.00 45.85 2.74
87 88 8.682936 ATTGACATTTATACAAGGCTCCTTAG 57.317 34.615 0.11 0.00 34.50 2.18
88 89 8.494433 AGATTGACATTTATACAAGGCTCCTTA 58.506 33.333 0.11 0.00 34.50 2.69
89 90 7.284034 CAGATTGACATTTATACAAGGCTCCTT 59.716 37.037 0.00 0.00 36.60 3.36
90 91 6.769822 CAGATTGACATTTATACAAGGCTCCT 59.230 38.462 0.00 0.00 0.00 3.69
91 92 6.767902 TCAGATTGACATTTATACAAGGCTCC 59.232 38.462 0.00 0.00 0.00 4.70
92 93 7.792374 TCAGATTGACATTTATACAAGGCTC 57.208 36.000 0.00 0.00 0.00 4.70
107 108 7.856398 GTGTCATTCATTGATCATCAGATTGAC 59.144 37.037 23.51 23.51 35.20 3.18
108 109 7.554835 TGTGTCATTCATTGATCATCAGATTGA 59.445 33.333 0.00 4.90 36.54 2.57
128 129 8.147704 TGTAATCAGACTAATGAACTTGTGTCA 58.852 33.333 0.00 0.00 31.76 3.58
148 149 4.703897 TGAATGGAGAACGGGATGTAATC 58.296 43.478 0.00 0.00 44.55 1.75
157 158 4.062293 TGTAAGTGTTGAATGGAGAACGG 58.938 43.478 0.00 0.00 0.00 4.44
162 163 5.106157 GGTGGATTGTAAGTGTTGAATGGAG 60.106 44.000 0.00 0.00 0.00 3.86
164 165 4.522405 TGGTGGATTGTAAGTGTTGAATGG 59.478 41.667 0.00 0.00 0.00 3.16
178 179 2.158559 TGAATTGTCGGTGGTGGATTG 58.841 47.619 0.00 0.00 0.00 2.67
184 185 0.324943 CCCTCTGAATTGTCGGTGGT 59.675 55.000 3.65 0.00 40.74 4.16
191 192 6.542821 TGATTTCTACAACCCTCTGAATTGT 58.457 36.000 6.78 6.78 39.75 2.71
224 225 6.706055 ATATTACCAATGACTCGTTATGCG 57.294 37.500 0.00 0.00 43.01 4.73
276 277 3.297736 CCTACCTCCGAGTGGTAAATCT 58.702 50.000 0.00 0.00 39.29 2.40
288 289 9.694137 CTCTAAAATAAATAAGACCTACCTCCG 57.306 37.037 0.00 0.00 0.00 4.63
344 345 1.272807 GGTAGGCCCTGTGTTGAGTA 58.727 55.000 0.00 0.00 0.00 2.59
349 350 0.766674 TCAGTGGTAGGCCCTGTGTT 60.767 55.000 0.00 0.00 35.72 3.32
354 355 1.203313 TCTTCTTCAGTGGTAGGCCCT 60.203 52.381 0.00 0.00 0.00 5.19
356 357 2.567615 TCTTCTTCTTCAGTGGTAGGCC 59.432 50.000 0.00 0.00 0.00 5.19
358 359 4.081917 GGAGTCTTCTTCTTCAGTGGTAGG 60.082 50.000 0.00 0.00 0.00 3.18
363 364 4.314121 CCAAGGAGTCTTCTTCTTCAGTG 58.686 47.826 0.00 0.00 37.41 3.66
366 367 2.975489 AGCCAAGGAGTCTTCTTCTTCA 59.025 45.455 0.00 0.00 37.41 3.02
367 368 3.694043 AGCCAAGGAGTCTTCTTCTTC 57.306 47.619 0.00 0.00 37.41 2.87
368 369 3.392616 TGAAGCCAAGGAGTCTTCTTCTT 59.607 43.478 0.00 0.00 39.89 2.52
369 370 2.975489 TGAAGCCAAGGAGTCTTCTTCT 59.025 45.455 0.00 0.00 36.04 2.85
390 391 2.886523 CCCATCAAATATCACGCACCAT 59.113 45.455 0.00 0.00 0.00 3.55
400 401 3.287222 CCAACCACGACCCATCAAATAT 58.713 45.455 0.00 0.00 0.00 1.28
413 414 2.033049 CCTCGATAGTCTACCAACCACG 59.967 54.545 0.00 0.00 37.40 4.94
419 420 1.681793 GCAAGCCTCGATAGTCTACCA 59.318 52.381 0.00 0.00 37.40 3.25
429 430 0.034186 ATTCCCATTGCAAGCCTCGA 60.034 50.000 4.94 0.00 0.00 4.04
430 431 0.819582 AATTCCCATTGCAAGCCTCG 59.180 50.000 4.94 0.00 0.00 4.63
474 475 4.018609 CGCTAACCAGATGGAGCG 57.981 61.111 17.26 17.26 46.87 5.03
479 480 2.221055 GGTTATTCGCGCTAACCAGATG 59.779 50.000 29.83 0.00 44.95 2.90
485 486 3.685836 ATTTGGGTTATTCGCGCTAAC 57.314 42.857 17.77 17.77 0.00 2.34
491 492 3.702330 GGTTGCTATTTGGGTTATTCGC 58.298 45.455 0.00 0.00 0.00 4.70
505 506 8.784994 TCTTAAAACAAATATTGTCGGTTGCTA 58.215 29.630 0.00 0.00 44.59 3.49
512 513 9.340695 TGAGCAATCTTAAAACAAATATTGTCG 57.659 29.630 0.00 0.00 44.59 4.35
518 519 7.946207 TGTGGTGAGCAATCTTAAAACAAATA 58.054 30.769 0.00 0.00 0.00 1.40
531 532 2.877097 TGGTGTATGTGGTGAGCAAT 57.123 45.000 0.00 0.00 0.00 3.56
553 554 4.776435 TCATATTCAGGATTGCTGACCA 57.224 40.909 7.45 0.00 0.00 4.02
555 556 8.158169 TGTATTTCATATTCAGGATTGCTGAC 57.842 34.615 7.45 0.00 0.00 3.51
582 583 0.885196 TTGGCGGGCAAAGTTGTATC 59.115 50.000 15.15 0.00 0.00 2.24
583 584 1.333177 TTTGGCGGGCAAAGTTGTAT 58.667 45.000 23.74 0.00 0.00 2.29
585 586 0.250513 TTTTTGGCGGGCAAAGTTGT 59.749 45.000 25.55 0.00 0.00 3.32
613 614 5.636965 GCAAGCTCATGGTGTCATATAGTAG 59.363 44.000 0.00 0.00 31.33 2.57
614 615 5.305386 AGCAAGCTCATGGTGTCATATAGTA 59.695 40.000 0.00 0.00 31.33 1.82
615 616 4.102210 AGCAAGCTCATGGTGTCATATAGT 59.898 41.667 0.00 0.00 31.33 2.12
616 617 4.639334 AGCAAGCTCATGGTGTCATATAG 58.361 43.478 0.00 0.00 31.33 1.31
654 655 1.601166 GGTGTGGTGGGTGTTCTTAC 58.399 55.000 0.00 0.00 0.00 2.34
670 671 5.431765 AGCAACTCATAGATTAACAGGGTG 58.568 41.667 0.00 0.00 0.00 4.61
696 697 4.500127 GTTTTGGGCCGCATTAACTAATT 58.500 39.130 0.00 0.00 0.00 1.40
713 714 3.132111 ACTTGGTAGCCACTTTGGTTTTG 59.868 43.478 0.00 0.00 40.46 2.44
717 718 2.306847 CAACTTGGTAGCCACTTTGGT 58.693 47.619 0.00 0.00 40.46 3.67
755 756 6.869388 TGAAATATAACTTTCCCGCCAAAAAC 59.131 34.615 0.00 0.00 34.83 2.43
788 789 6.292703 CGAGTAAACCAAACAGAAACCTACTG 60.293 42.308 0.00 0.00 40.68 2.74
789 790 5.756833 CGAGTAAACCAAACAGAAACCTACT 59.243 40.000 0.00 0.00 0.00 2.57
790 791 5.559608 GCGAGTAAACCAAACAGAAACCTAC 60.560 44.000 0.00 0.00 0.00 3.18
791 792 4.512571 GCGAGTAAACCAAACAGAAACCTA 59.487 41.667 0.00 0.00 0.00 3.08
792 793 3.314357 GCGAGTAAACCAAACAGAAACCT 59.686 43.478 0.00 0.00 0.00 3.50
797 798 3.128349 GACTGCGAGTAAACCAAACAGA 58.872 45.455 0.00 0.00 0.00 3.41
806 807 3.585862 GGTGATTGAGACTGCGAGTAAA 58.414 45.455 0.00 0.00 0.00 2.01
814 815 0.320683 TGGTGCGGTGATTGAGACTG 60.321 55.000 0.00 0.00 0.00 3.51
815 816 0.396435 TTGGTGCGGTGATTGAGACT 59.604 50.000 0.00 0.00 0.00 3.24
816 817 0.517316 GTTGGTGCGGTGATTGAGAC 59.483 55.000 0.00 0.00 0.00 3.36
822 823 0.108804 CTAGACGTTGGTGCGGTGAT 60.109 55.000 0.00 0.00 35.98 3.06
823 824 1.287815 CTAGACGTTGGTGCGGTGA 59.712 57.895 0.00 0.00 35.98 4.02
833 834 3.217242 CTGCCAAGCACTAGACGTT 57.783 52.632 0.00 0.00 33.79 3.99
851 852 6.462073 TTTGTAGTGATTTTCTACAGTCGC 57.538 37.500 6.03 0.00 45.17 5.19
864 865 8.175069 CGTAGCAAATGTTACATTTGTAGTGAT 58.825 33.333 35.77 21.35 40.19 3.06
889 890 0.725686 CAGAATCTGTGGAAGCTGCG 59.274 55.000 1.31 0.00 0.00 5.18
916 917 0.474660 AGGAACAGAGGAAGCAGGGT 60.475 55.000 0.00 0.00 0.00 4.34
929 930 7.252612 TGGAGTAATAAGATTGTGAGGAACA 57.747 36.000 0.00 0.00 36.85 3.18
931 932 6.070251 TGCTGGAGTAATAAGATTGTGAGGAA 60.070 38.462 0.00 0.00 0.00 3.36
932 933 5.425217 TGCTGGAGTAATAAGATTGTGAGGA 59.575 40.000 0.00 0.00 0.00 3.71
933 934 5.525378 GTGCTGGAGTAATAAGATTGTGAGG 59.475 44.000 0.00 0.00 0.00 3.86
934 935 5.525378 GGTGCTGGAGTAATAAGATTGTGAG 59.475 44.000 0.00 0.00 0.00 3.51
935 936 5.428253 GGTGCTGGAGTAATAAGATTGTGA 58.572 41.667 0.00 0.00 0.00 3.58
938 939 4.780815 TGGGTGCTGGAGTAATAAGATTG 58.219 43.478 0.00 0.00 0.00 2.67
939 940 4.687219 GCTGGGTGCTGGAGTAATAAGATT 60.687 45.833 0.00 0.00 38.95 2.40
940 941 3.181450 GCTGGGTGCTGGAGTAATAAGAT 60.181 47.826 0.00 0.00 38.95 2.40
941 942 2.170607 GCTGGGTGCTGGAGTAATAAGA 59.829 50.000 0.00 0.00 38.95 2.10
942 943 2.565841 GCTGGGTGCTGGAGTAATAAG 58.434 52.381 0.00 0.00 38.95 1.73
943 944 2.710096 GCTGGGTGCTGGAGTAATAA 57.290 50.000 0.00 0.00 38.95 1.40
975 1295 5.600908 TTGTCATCTTTACGGTTTACTGC 57.399 39.130 0.00 0.00 0.00 4.40
976 1296 5.178623 TGCTTGTCATCTTTACGGTTTACTG 59.821 40.000 0.00 0.00 0.00 2.74
991 1311 1.736126 CGACTTCTGCATGCTTGTCAT 59.264 47.619 20.33 0.00 35.31 3.06
999 1319 2.434884 ACGCCCGACTTCTGCATG 60.435 61.111 0.00 0.00 0.00 4.06
1209 1540 2.737376 GTCACGTTGGCGAGGGAC 60.737 66.667 0.00 0.00 42.00 4.46
1666 1997 0.830444 AGCCTCGTGTACAGGGACAA 60.830 55.000 15.15 0.00 0.00 3.18
1806 2145 9.261180 CTAGCATCCAACGATTAAGAAGAATTA 57.739 33.333 0.00 0.00 0.00 1.40
1809 2148 5.523916 GCTAGCATCCAACGATTAAGAAGAA 59.476 40.000 10.63 0.00 0.00 2.52
1823 2168 6.270927 AGAAGAATTAGGTATGCTAGCATCCA 59.729 38.462 32.76 14.86 37.82 3.41
1827 2172 9.494271 CATTAAGAAGAATTAGGTATGCTAGCA 57.506 33.333 21.85 21.85 0.00 3.49
1830 2175 9.273016 GCACATTAAGAAGAATTAGGTATGCTA 57.727 33.333 0.00 0.00 0.00 3.49
1831 2176 7.775093 TGCACATTAAGAAGAATTAGGTATGCT 59.225 33.333 0.00 0.00 0.00 3.79
1841 2266 5.012239 TCCAAGCTGCACATTAAGAAGAAT 58.988 37.500 1.02 0.00 0.00 2.40
1844 2269 4.771590 TTCCAAGCTGCACATTAAGAAG 57.228 40.909 1.02 0.00 0.00 2.85
1846 2271 3.444742 CCATTCCAAGCTGCACATTAAGA 59.555 43.478 1.02 0.00 0.00 2.10
1847 2272 3.194116 ACCATTCCAAGCTGCACATTAAG 59.806 43.478 1.02 0.00 0.00 1.85
1937 2392 5.928976 TCTTGGTTTGATCACCATATCGAT 58.071 37.500 2.16 2.16 46.60 3.59
2001 2484 3.706594 TGCAATACTCAGAGAAGTAGGGG 59.293 47.826 3.79 0.00 35.31 4.79
2006 2505 7.175347 TCAGTAATGCAATACTCAGAGAAGT 57.825 36.000 11.59 0.00 33.90 3.01
2014 2513 6.554419 TGCACAATTCAGTAATGCAATACTC 58.446 36.000 11.59 0.00 43.00 2.59
2018 2517 5.184479 AGACTGCACAATTCAGTAATGCAAT 59.816 36.000 0.00 0.00 45.08 3.56
2034 2536 0.928229 CGCCGGTATTAAGACTGCAC 59.072 55.000 1.90 0.00 0.00 4.57
2134 2663 6.537660 CAGACACCCATCAGCATATACATATG 59.462 42.308 0.00 0.00 42.30 1.78
2151 2685 2.262423 AAAAGCAGAGACAGACACCC 57.738 50.000 0.00 0.00 0.00 4.61
2159 2693 4.683320 GCAAATGAAGGAAAAAGCAGAGAC 59.317 41.667 0.00 0.00 0.00 3.36
2161 2695 4.624015 TGCAAATGAAGGAAAAAGCAGAG 58.376 39.130 0.00 0.00 0.00 3.35
2162 2696 4.669206 TGCAAATGAAGGAAAAAGCAGA 57.331 36.364 0.00 0.00 0.00 4.26
2163 2697 5.934935 ATTGCAAATGAAGGAAAAAGCAG 57.065 34.783 1.71 0.00 31.87 4.24
2165 2699 6.619232 GCTGTATTGCAAATGAAGGAAAAAGC 60.619 38.462 1.71 0.00 0.00 3.51
2166 2700 6.424509 TGCTGTATTGCAAATGAAGGAAAAAG 59.575 34.615 1.71 0.00 40.29 2.27
2167 2701 6.202570 GTGCTGTATTGCAAATGAAGGAAAAA 59.797 34.615 1.71 0.00 45.12 1.94
2168 2702 5.695816 GTGCTGTATTGCAAATGAAGGAAAA 59.304 36.000 1.71 0.00 45.12 2.29
2169 2703 5.229423 GTGCTGTATTGCAAATGAAGGAAA 58.771 37.500 1.71 0.00 45.12 3.13
2170 2704 4.615682 CGTGCTGTATTGCAAATGAAGGAA 60.616 41.667 1.71 0.00 45.12 3.36
2175 2719 1.465521 CGCGTGCTGTATTGCAAATGA 60.466 47.619 1.71 0.00 45.12 2.57
2179 2723 2.175566 GCGCGTGCTGTATTGCAA 59.824 55.556 15.02 0.00 45.12 4.08
2181 3155 3.645157 AACGCGCGTGCTGTATTGC 62.645 57.895 38.44 0.00 39.65 3.56
2385 3370 6.715280 TCCATCTATGAAGAAAGATATGGCC 58.285 40.000 0.00 0.00 34.73 5.36
2484 3709 6.974932 GACAAAGATCATGTCACTATGTGT 57.025 37.500 20.57 0.00 45.13 3.72
2519 3747 2.573462 ACATCCATAGAGCACACCTGTT 59.427 45.455 0.00 0.00 0.00 3.16
2659 3973 3.056891 CCCGGCACAATGTTAAGTTCATT 60.057 43.478 0.00 0.00 36.16 2.57
2674 3989 1.816074 TTCATGTAGTTTCCCGGCAC 58.184 50.000 0.00 0.00 0.00 5.01
2676 3991 3.058224 GCATATTCATGTAGTTTCCCGGC 60.058 47.826 0.00 0.00 34.40 6.13
2678 3993 4.214119 CAGGCATATTCATGTAGTTTCCCG 59.786 45.833 0.00 0.00 34.40 5.14
2754 4094 2.588314 GATGAGGCTGCCGCAGAG 60.588 66.667 28.20 0.00 36.65 3.35
2821 4161 3.426525 GCGCAAATTGCAAGCTATTATCC 59.573 43.478 18.65 0.00 45.36 2.59
2823 4163 4.044336 TGCGCAAATTGCAAGCTATTAT 57.956 36.364 18.65 0.00 45.36 1.28
2827 4167 0.733566 GCTGCGCAAATTGCAAGCTA 60.734 50.000 25.88 10.71 45.36 3.32
2906 4291 4.853924 AACACCATGTCTTTTGCCTTAG 57.146 40.909 0.00 0.00 0.00 2.18
2965 4350 6.126911 TGGCCTGTCTATACACATAACAATCA 60.127 38.462 3.32 0.00 0.00 2.57
2967 4352 6.247229 TGGCCTGTCTATACACATAACAAT 57.753 37.500 3.32 0.00 0.00 2.71
2971 4367 6.039270 GCAAATTGGCCTGTCTATACACATAA 59.961 38.462 3.32 0.00 0.00 1.90
2973 4369 4.339247 GCAAATTGGCCTGTCTATACACAT 59.661 41.667 3.32 0.00 0.00 3.21
2979 4375 2.684881 CGAAGCAAATTGGCCTGTCTAT 59.315 45.455 3.32 0.00 0.00 1.98
2984 4380 0.171903 CCTCGAAGCAAATTGGCCTG 59.828 55.000 3.32 0.00 0.00 4.85
3004 4400 7.122650 CCACAATATTCACATTTTCTACCCACT 59.877 37.037 0.00 0.00 0.00 4.00
3006 4402 6.379703 CCCACAATATTCACATTTTCTACCCA 59.620 38.462 0.00 0.00 0.00 4.51
3010 4406 8.815565 TTAGCCCACAATATTCACATTTTCTA 57.184 30.769 0.00 0.00 0.00 2.10
3011 4407 7.615365 TCTTAGCCCACAATATTCACATTTTCT 59.385 33.333 0.00 0.00 0.00 2.52
3012 4408 7.771183 TCTTAGCCCACAATATTCACATTTTC 58.229 34.615 0.00 0.00 0.00 2.29
3013 4409 7.716799 TCTTAGCCCACAATATTCACATTTT 57.283 32.000 0.00 0.00 0.00 1.82
3014 4410 7.902920 ATCTTAGCCCACAATATTCACATTT 57.097 32.000 0.00 0.00 0.00 2.32
3041 4437 2.632512 TCAAGTGATGCTGGTGACACTA 59.367 45.455 5.39 0.00 41.73 2.74
3042 4438 1.417517 TCAAGTGATGCTGGTGACACT 59.582 47.619 5.39 0.00 43.92 3.55
3043 4439 1.882912 TCAAGTGATGCTGGTGACAC 58.117 50.000 0.00 0.00 35.60 3.67
3047 4443 4.637091 TGACAATATCAAGTGATGCTGGTG 59.363 41.667 4.00 0.00 36.05 4.17
3142 4538 8.598924 CATATATTCCGCATGACAGAAATAGTC 58.401 37.037 0.00 0.00 36.55 2.59
3143 4539 7.065085 GCATATATTCCGCATGACAGAAATAGT 59.935 37.037 0.00 0.00 0.00 2.12
3144 4540 7.279536 AGCATATATTCCGCATGACAGAAATAG 59.720 37.037 0.00 0.00 0.00 1.73
3145 4541 7.105588 AGCATATATTCCGCATGACAGAAATA 58.894 34.615 0.00 0.00 0.00 1.40
3146 4542 5.942236 AGCATATATTCCGCATGACAGAAAT 59.058 36.000 0.00 0.00 0.00 2.17
3147 4543 5.308014 AGCATATATTCCGCATGACAGAAA 58.692 37.500 0.00 0.00 0.00 2.52
3148 4544 4.898320 AGCATATATTCCGCATGACAGAA 58.102 39.130 0.00 0.00 0.00 3.02
3149 4545 4.541973 AGCATATATTCCGCATGACAGA 57.458 40.909 0.00 0.00 0.00 3.41
3150 4546 6.726258 TTAAGCATATATTCCGCATGACAG 57.274 37.500 0.00 0.00 0.00 3.51
3151 4547 8.962884 ATATTAAGCATATATTCCGCATGACA 57.037 30.769 0.00 0.00 0.00 3.58
3184 4580 6.931281 TCTACATCTCCAACTATGCTAAATGC 59.069 38.462 0.00 0.00 43.25 3.56
3185 4581 7.117523 GCTCTACATCTCCAACTATGCTAAATG 59.882 40.741 0.00 0.00 0.00 2.32
3186 4582 7.158021 GCTCTACATCTCCAACTATGCTAAAT 58.842 38.462 0.00 0.00 0.00 1.40
3187 4583 6.516718 GCTCTACATCTCCAACTATGCTAAA 58.483 40.000 0.00 0.00 0.00 1.85
3188 4584 5.278512 CGCTCTACATCTCCAACTATGCTAA 60.279 44.000 0.00 0.00 0.00 3.09
3189 4585 4.216472 CGCTCTACATCTCCAACTATGCTA 59.784 45.833 0.00 0.00 0.00 3.49
3190 4586 3.005261 CGCTCTACATCTCCAACTATGCT 59.995 47.826 0.00 0.00 0.00 3.79
3191 4587 3.243569 ACGCTCTACATCTCCAACTATGC 60.244 47.826 0.00 0.00 0.00 3.14
3192 4588 4.576216 ACGCTCTACATCTCCAACTATG 57.424 45.455 0.00 0.00 0.00 2.23
3193 4589 6.902771 AATACGCTCTACATCTCCAACTAT 57.097 37.500 0.00 0.00 0.00 2.12
3199 4595 5.810587 TCAACAAAATACGCTCTACATCTCC 59.189 40.000 0.00 0.00 0.00 3.71
3202 4598 5.810587 TCCTCAACAAAATACGCTCTACATC 59.189 40.000 0.00 0.00 0.00 3.06
3214 4610 6.819284 ACATTGTGTGATTCCTCAACAAAAT 58.181 32.000 0.00 0.00 36.69 1.82
3254 4650 0.462759 GCTATCAGCGGCAACTTCCT 60.463 55.000 1.45 0.00 0.00 3.36
3259 4657 1.212616 CTAGTGCTATCAGCGGCAAC 58.787 55.000 1.45 0.00 46.26 4.17
3282 4680 7.069702 TCAGCTACTTCATTCAGATTCAGAGAT 59.930 37.037 0.00 0.00 0.00 2.75
3294 4692 5.510520 CCTCCCTGTATCAGCTACTTCATTC 60.511 48.000 0.00 0.00 0.00 2.67
3296 4694 3.900601 CCTCCCTGTATCAGCTACTTCAT 59.099 47.826 0.00 0.00 0.00 2.57
3298 4696 3.567397 TCCTCCCTGTATCAGCTACTTC 58.433 50.000 0.00 0.00 0.00 3.01
3305 4703 5.246203 TCCGAATATTTCCTCCCTGTATCAG 59.754 44.000 0.00 0.00 0.00 2.90
3318 4716 5.277857 TGTCTCCCTTCTCCGAATATTTC 57.722 43.478 0.00 0.00 0.00 2.17
3326 4724 2.060980 CCCCTGTCTCCCTTCTCCG 61.061 68.421 0.00 0.00 0.00 4.63
3327 4725 0.252742 TTCCCCTGTCTCCCTTCTCC 60.253 60.000 0.00 0.00 0.00 3.71
3333 4731 0.689412 CTCTCCTTCCCCTGTCTCCC 60.689 65.000 0.00 0.00 0.00 4.30
3334 4732 0.689412 CCTCTCCTTCCCCTGTCTCC 60.689 65.000 0.00 0.00 0.00 3.71
3343 4741 1.306568 ACCTGCTCCCTCTCCTTCC 60.307 63.158 0.00 0.00 0.00 3.46
3348 4746 1.042559 CCTCTCACCTGCTCCCTCTC 61.043 65.000 0.00 0.00 0.00 3.20
3352 4750 2.039624 TCCCTCTCACCTGCTCCC 59.960 66.667 0.00 0.00 0.00 4.30
3353 4751 2.063378 CCTCCCTCTCACCTGCTCC 61.063 68.421 0.00 0.00 0.00 4.70
3354 4752 0.398381 ATCCTCCCTCTCACCTGCTC 60.398 60.000 0.00 0.00 0.00 4.26
3378 4776 6.000219 AGCTGCTCAAATTTACTTCTCAGAA 59.000 36.000 0.00 0.00 0.00 3.02
3379 4777 5.410746 CAGCTGCTCAAATTTACTTCTCAGA 59.589 40.000 0.00 0.00 0.00 3.27
3417 4952 5.466819 GGGTTGTTAACTTATTGGCAACTC 58.533 41.667 0.00 0.00 35.69 3.01
3421 4956 4.120946 AGGGGTTGTTAACTTATTGGCA 57.879 40.909 7.22 0.00 0.00 4.92
3422 4957 5.503002 TCTAGGGGTTGTTAACTTATTGGC 58.497 41.667 7.22 0.00 0.00 4.52
3458 4993 6.522946 GTTAGCTAGATATTCGGGTCCTTTT 58.477 40.000 0.00 0.00 0.00 2.27
3467 5005 8.508800 AAAATCTGACGTTAGCTAGATATTCG 57.491 34.615 1.76 10.18 30.19 3.34
3475 5013 5.726397 TGCCTAAAAATCTGACGTTAGCTA 58.274 37.500 1.76 0.00 0.00 3.32
3479 5017 4.095782 GCCATGCCTAAAAATCTGACGTTA 59.904 41.667 0.00 0.00 0.00 3.18
3526 5064 2.367241 TGTCATCCTCGAAGACCACAAA 59.633 45.455 0.00 0.00 30.44 2.83
3532 5070 5.471257 ACTAAACTTGTCATCCTCGAAGAC 58.529 41.667 0.00 0.00 31.90 3.01
3535 5073 5.694910 GTGAACTAAACTTGTCATCCTCGAA 59.305 40.000 0.00 0.00 0.00 3.71
3537 5075 4.090066 CGTGAACTAAACTTGTCATCCTCG 59.910 45.833 0.00 0.00 0.00 4.63
3545 5083 2.335316 TGCCCGTGAACTAAACTTGT 57.665 45.000 0.00 0.00 0.00 3.16
3552 5090 2.552599 TTTGTCATGCCCGTGAACTA 57.447 45.000 0.00 0.00 0.00 2.24
3557 5095 0.179156 GCAGATTTGTCATGCCCGTG 60.179 55.000 0.00 0.00 33.81 4.94
3567 5105 2.803030 ATGAGCTGAGGCAGATTTGT 57.197 45.000 0.00 0.00 41.70 2.83
3594 5132 1.408702 ACAAGCACGGCAATTTTCTGT 59.591 42.857 0.00 0.00 0.00 3.41
3616 5154 3.554324 GCGCGAGGATGACAAATTTAGTA 59.446 43.478 12.10 0.00 0.00 1.82
3630 5168 3.472652 ACAATTTATATTGGCGCGAGGA 58.527 40.909 12.10 0.00 44.42 3.71
3684 5222 6.371548 TCTTTCGGAAATGTCTGACCTAAATG 59.628 38.462 5.17 0.00 38.95 2.32
3686 5224 5.860611 TCTTTCGGAAATGTCTGACCTAAA 58.139 37.500 5.17 0.00 38.95 1.85
3688 5226 5.477607 TTCTTTCGGAAATGTCTGACCTA 57.522 39.130 5.17 0.00 38.95 3.08
3690 5228 5.294552 CCTATTCTTTCGGAAATGTCTGACC 59.705 44.000 5.17 0.00 38.95 4.02
3715 5253 7.325821 TGCAATTTTGTGATCGAACTTACAATC 59.674 33.333 0.00 0.00 33.56 2.67
3758 5296 9.485206 GTCTTATACTTCCAAGTTTGTTGTCTA 57.515 33.333 0.00 0.00 40.37 2.59
3769 5307 5.245531 TGGCTGTTGTCTTATACTTCCAAG 58.754 41.667 0.00 0.00 0.00 3.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.