Multiple sequence alignment - TraesCS7A01G493500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G493500 chr7A 100.000 4508 0 0 1 4508 682006631 682002124 0.000000e+00 8325.0
1 TraesCS7A01G493500 chr7A 91.236 445 35 4 3961 4404 493504425 493503984 1.790000e-168 603.0
2 TraesCS7A01G493500 chr7A 90.000 110 11 0 4399 4508 493495266 493495157 4.700000e-30 143.0
3 TraesCS7A01G493500 chr7B 91.562 1837 102 24 1 1795 672333820 672335645 0.000000e+00 2484.0
4 TraesCS7A01G493500 chr7B 91.508 1837 103 25 1 1795 672381409 672383234 0.000000e+00 2479.0
5 TraesCS7A01G493500 chr7B 93.878 49 3 0 3959 4007 552699072 552699024 1.740000e-09 75.0
6 TraesCS7A01G493500 chr7D 91.711 1677 102 20 1 1649 591455593 591453926 0.000000e+00 2292.0
7 TraesCS7A01G493500 chr7D 90.831 927 52 11 2973 3879 591452302 591451389 0.000000e+00 1210.0
8 TraesCS7A01G493500 chr7D 94.306 720 32 6 2150 2867 591453442 591452730 0.000000e+00 1094.0
9 TraesCS7A01G493500 chr7D 80.638 909 117 30 65 938 79530081 79530965 0.000000e+00 649.0
10 TraesCS7A01G493500 chr7D 89.007 282 10 5 1695 1958 591453923 591453645 3.360000e-86 329.0
11 TraesCS7A01G493500 chr7D 95.395 152 7 0 1999 2150 591453658 591453507 4.510000e-60 243.0
12 TraesCS7A01G493500 chr7D 93.407 91 4 2 2865 2953 591452676 591452586 2.830000e-27 134.0
13 TraesCS7A01G493500 chr7D 94.444 54 1 1 3960 4011 134448982 134448929 1.040000e-11 82.4
14 TraesCS7A01G493500 chr3A 80.456 1228 137 51 939 2100 127271771 127272961 0.000000e+00 843.0
15 TraesCS7A01G493500 chr3A 78.669 1097 125 41 2858 3918 127273727 127274750 2.960000e-176 628.0
16 TraesCS7A01G493500 chr2A 93.786 515 31 1 3958 4472 381818047 381817534 0.000000e+00 773.0
17 TraesCS7A01G493500 chr2A 80.804 995 88 52 2 939 691231256 691230308 0.000000e+00 684.0
18 TraesCS7A01G493500 chr6A 81.552 992 94 40 1 938 579956398 579955442 0.000000e+00 736.0
19 TraesCS7A01G493500 chr6A 92.308 52 3 1 3959 4010 602136243 602136293 6.260000e-09 73.1
20 TraesCS7A01G493500 chr3B 83.073 768 100 18 939 1678 172447704 172448469 0.000000e+00 671.0
21 TraesCS7A01G493500 chr3B 81.719 640 71 14 3191 3828 172450843 172451438 4.050000e-135 492.0
22 TraesCS7A01G493500 chr3B 78.650 726 113 24 2165 2857 172449770 172450486 1.150000e-120 444.0
23 TraesCS7A01G493500 chr3B 87.255 102 11 2 2709 2809 92593442 92593542 1.020000e-21 115.0
24 TraesCS7A01G493500 chr3B 97.727 44 1 0 3960 4003 29689648 29689691 4.840000e-10 76.8
25 TraesCS7A01G493500 chr5D 81.808 874 87 33 73 899 114628054 114627206 0.000000e+00 667.0
26 TraesCS7A01G493500 chr5D 84.527 698 63 25 278 939 486900301 486899613 0.000000e+00 649.0
27 TraesCS7A01G493500 chr5A 79.464 1008 120 48 1 938 9856881 9855891 6.360000e-178 634.0
28 TraesCS7A01G493500 chr5A 83.590 585 59 11 313 863 119999224 119998643 8.650000e-142 514.0
29 TraesCS7A01G493500 chr2D 80.262 917 106 43 59 939 547676031 547676908 4.950000e-174 621.0
30 TraesCS7A01G493500 chr2D 88.060 67 4 3 3947 4011 194350159 194350223 4.840000e-10 76.8
31 TraesCS7A01G493500 chr2D 92.308 52 3 1 3959 4010 483154099 483154049 6.260000e-09 73.1
32 TraesCS7A01G493500 chr3D 78.433 1085 126 54 2858 3918 120314796 120315796 3.860000e-170 608.0
33 TraesCS7A01G493500 chr3D 88.235 85 8 2 2726 2809 58397400 58397483 2.870000e-17 100.0
34 TraesCS7A01G493500 chrUn 94.474 380 18 1 1416 1795 323918006 323918382 2.340000e-162 582.0
35 TraesCS7A01G493500 chr1D 78.364 550 106 13 3959 4504 490942905 490943445 1.200000e-90 344.0
36 TraesCS7A01G493500 chr1D 82.275 378 39 11 181 540 296539254 296538887 7.330000e-78 302.0
37 TraesCS7A01G493500 chr1A 77.558 557 103 18 3960 4508 169826872 169826330 2.620000e-82 316.0
38 TraesCS7A01G493500 chr1A 82.958 311 24 15 73 362 115368619 115368317 2.080000e-63 254.0
39 TraesCS7A01G493500 chr1B 81.210 314 29 17 73 364 167998993 167998688 4.540000e-55 226.0
40 TraesCS7A01G493500 chr4A 93.878 49 2 1 3955 4003 540093839 540093886 6.260000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G493500 chr7A 682002124 682006631 4507 True 8325.000000 8325 100.000000 1 4508 1 chr7A.!!$R3 4507
1 TraesCS7A01G493500 chr7B 672333820 672335645 1825 False 2484.000000 2484 91.562000 1 1795 1 chr7B.!!$F1 1794
2 TraesCS7A01G493500 chr7B 672381409 672383234 1825 False 2479.000000 2479 91.508000 1 1795 1 chr7B.!!$F2 1794
3 TraesCS7A01G493500 chr7D 591451389 591455593 4204 True 883.666667 2292 92.442833 1 3879 6 chr7D.!!$R2 3878
4 TraesCS7A01G493500 chr7D 79530081 79530965 884 False 649.000000 649 80.638000 65 938 1 chr7D.!!$F1 873
5 TraesCS7A01G493500 chr3A 127271771 127274750 2979 False 735.500000 843 79.562500 939 3918 2 chr3A.!!$F1 2979
6 TraesCS7A01G493500 chr2A 381817534 381818047 513 True 773.000000 773 93.786000 3958 4472 1 chr2A.!!$R1 514
7 TraesCS7A01G493500 chr2A 691230308 691231256 948 True 684.000000 684 80.804000 2 939 1 chr2A.!!$R2 937
8 TraesCS7A01G493500 chr6A 579955442 579956398 956 True 736.000000 736 81.552000 1 938 1 chr6A.!!$R1 937
9 TraesCS7A01G493500 chr3B 172447704 172451438 3734 False 535.666667 671 81.147333 939 3828 3 chr3B.!!$F3 2889
10 TraesCS7A01G493500 chr5D 114627206 114628054 848 True 667.000000 667 81.808000 73 899 1 chr5D.!!$R1 826
11 TraesCS7A01G493500 chr5D 486899613 486900301 688 True 649.000000 649 84.527000 278 939 1 chr5D.!!$R2 661
12 TraesCS7A01G493500 chr5A 9855891 9856881 990 True 634.000000 634 79.464000 1 938 1 chr5A.!!$R1 937
13 TraesCS7A01G493500 chr5A 119998643 119999224 581 True 514.000000 514 83.590000 313 863 1 chr5A.!!$R2 550
14 TraesCS7A01G493500 chr2D 547676031 547676908 877 False 621.000000 621 80.262000 59 939 1 chr2D.!!$F2 880
15 TraesCS7A01G493500 chr3D 120314796 120315796 1000 False 608.000000 608 78.433000 2858 3918 1 chr3D.!!$F2 1060
16 TraesCS7A01G493500 chr1D 490942905 490943445 540 False 344.000000 344 78.364000 3959 4504 1 chr1D.!!$F1 545
17 TraesCS7A01G493500 chr1A 169826330 169826872 542 True 316.000000 316 77.558000 3960 4508 1 chr1A.!!$R2 548

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
32 33 0.267356 CCTCTTCCCTCCTCCCTCAT 59.733 60.000 0.00 0.00 0.0 2.90 F
1287 1418 1.137872 AGAGGTGCCGATCTGATTCAC 59.862 52.381 8.95 8.95 0.0 3.18 F
1942 2329 0.462759 CCCCTCGAATCACTGGAAGC 60.463 60.000 0.00 0.00 37.6 3.86 F
2965 4181 0.038166 TGAGAATGTCAGCCCCCAAC 59.962 55.000 0.00 0.00 0.0 3.77 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1349 1480 0.256464 TCACCAAGACCCAAAACGGT 59.744 50.0 0.00 0.0 39.49 4.83 R
2266 3385 0.036952 AGGCCTCACGACATGTTCTG 60.037 55.0 0.00 0.0 0.00 3.02 R
3466 4951 0.025898 TCGTCATCATCGTCGTCGTC 59.974 55.0 1.33 0.0 38.33 4.20 R
4037 5555 0.251608 GCCCAGGCCTAGTTTTTCCA 60.252 55.0 3.98 0.0 34.56 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 1.491668 GTCCTTCCTCTTCCCTCCTC 58.508 60.000 0.00 0.00 0.00 3.71
32 33 0.267356 CCTCTTCCCTCCTCCCTCAT 59.733 60.000 0.00 0.00 0.00 2.90
171 194 4.986034 TGATGAGTGCTTGCTTGATTTTTG 59.014 37.500 0.00 0.00 0.00 2.44
179 202 3.374220 TGCTTGATTTTTGGAGTGCAG 57.626 42.857 0.00 0.00 0.00 4.41
180 203 2.064014 GCTTGATTTTTGGAGTGCAGC 58.936 47.619 0.00 0.00 0.00 5.25
181 204 2.546373 GCTTGATTTTTGGAGTGCAGCA 60.546 45.455 0.00 0.00 0.00 4.41
183 206 3.306917 TGATTTTTGGAGTGCAGCATG 57.693 42.857 0.00 0.00 40.87 4.06
184 207 2.629137 TGATTTTTGGAGTGCAGCATGT 59.371 40.909 0.00 0.00 39.31 3.21
185 208 3.069872 TGATTTTTGGAGTGCAGCATGTT 59.930 39.130 0.00 0.00 39.31 2.71
186 209 3.540314 TTTTTGGAGTGCAGCATGTTT 57.460 38.095 0.00 0.00 39.31 2.83
305 354 6.419710 GGTTTAAACATGTTAGCAGTGAAACC 59.580 38.462 19.57 16.43 37.80 3.27
418 498 8.257830 GCAGAAGCTTTGTCTTAGTTATACTT 57.742 34.615 0.00 0.00 37.91 2.24
427 507 7.766219 TGTCTTAGTTATACTTGCCGAAATC 57.234 36.000 0.00 0.00 0.00 2.17
459 551 8.591072 ACACATTAGTACTAGTGGTATTGTTGT 58.409 33.333 24.31 16.12 36.35 3.32
704 811 9.541884 TTGCTAAAATCTAATTCTACCCCTTTT 57.458 29.630 0.00 0.00 0.00 2.27
742 849 2.094906 CAGGGCATCAACATTGTCAGTG 60.095 50.000 0.00 0.00 0.00 3.66
1213 1344 3.980775 CGGTTTGCCACTCTTTATTTGTG 59.019 43.478 0.00 0.00 34.09 3.33
1219 1350 3.507622 GCCACTCTTTATTTGTGCTCCTT 59.492 43.478 0.00 0.00 0.00 3.36
1231 1362 2.165998 GTGCTCCTTGATCAAAGCCTT 58.834 47.619 23.13 0.00 34.24 4.35
1286 1417 1.410517 GAGAGGTGCCGATCTGATTCA 59.589 52.381 0.00 0.00 0.00 2.57
1287 1418 1.137872 AGAGGTGCCGATCTGATTCAC 59.862 52.381 8.95 8.95 0.00 3.18
1290 1421 1.936547 GGTGCCGATCTGATTCACTTC 59.063 52.381 14.02 0.00 0.00 3.01
1297 1428 3.971871 CGATCTGATTCACTTCGCTAGAC 59.028 47.826 0.00 0.00 0.00 2.59
1335 1466 7.481798 CGAAGAAATGTTTAAGTTGGTATGAGC 59.518 37.037 0.00 0.00 0.00 4.26
1348 1479 3.014623 GGTATGAGCGTTTAGGCCTTTT 58.985 45.455 12.58 0.00 0.00 2.27
1349 1480 4.193865 GGTATGAGCGTTTAGGCCTTTTA 58.806 43.478 12.58 0.00 0.00 1.52
1350 1481 4.034858 GGTATGAGCGTTTAGGCCTTTTAC 59.965 45.833 12.58 6.01 0.00 2.01
1436 1573 2.745281 GCCGTTGGCTGTTAGAATGTTA 59.255 45.455 0.00 0.00 46.69 2.41
1458 1595 1.451387 GGTATTGGCCTCGGTGTGG 60.451 63.158 3.32 0.00 0.00 4.17
1555 1699 1.364626 CTCAGGATTGCACTGGTCGC 61.365 60.000 3.24 0.00 36.62 5.19
1612 1771 5.010820 ACTGAATAGAAGGGTATAGCGGTTC 59.989 44.000 0.00 7.31 0.00 3.62
1623 1782 3.520290 ATAGCGGTTCGATCTTTCACA 57.480 42.857 0.00 0.00 0.00 3.58
1635 1794 4.379813 CGATCTTTCACATTCTGGGGTTTG 60.380 45.833 0.00 0.00 0.00 2.93
1783 2122 1.675310 CCGGCAAGCTCACCAATCA 60.675 57.895 5.86 0.00 0.00 2.57
1811 2150 3.864540 GCTTACATATCACTGCCGCCATA 60.865 47.826 0.00 0.00 0.00 2.74
1855 2203 1.986413 CTTCTCCCACCTCCACTGG 59.014 63.158 0.00 0.00 0.00 4.00
1889 2261 4.646945 TCAGTGGTGTTAATTTCTTTGGCA 59.353 37.500 0.00 0.00 0.00 4.92
1918 2290 2.542907 CCAACACACAGGCACGTCC 61.543 63.158 0.00 0.00 0.00 4.79
1942 2329 0.462759 CCCCTCGAATCACTGGAAGC 60.463 60.000 0.00 0.00 37.60 3.86
1948 2335 1.590238 CGAATCACTGGAAGCGATGTC 59.410 52.381 0.00 0.00 33.95 3.06
1960 2347 3.425578 CGATGTCGCCTCTTCAAGT 57.574 52.632 0.00 0.00 0.00 3.16
1977 3020 5.607119 TCAAGTTTATTCTCGGCAAGTTC 57.393 39.130 0.00 0.00 0.00 3.01
1978 3021 5.060506 TCAAGTTTATTCTCGGCAAGTTCA 58.939 37.500 0.00 0.00 0.00 3.18
1988 3035 2.742053 TCGGCAAGTTCAAGCTTATCAC 59.258 45.455 0.00 0.00 0.00 3.06
1990 3037 3.425359 CGGCAAGTTCAAGCTTATCACAG 60.425 47.826 0.00 0.00 0.00 3.66
1996 3043 4.940046 AGTTCAAGCTTATCACAGTGATGG 59.060 41.667 24.15 17.13 37.70 3.51
2004 3051 6.051717 GCTTATCACAGTGATGGTTATGAGT 58.948 40.000 24.15 0.00 37.70 3.41
2051 3105 1.002468 CAAGACGGTTTCAGCACCTTG 60.002 52.381 0.00 0.00 34.22 3.61
2158 3277 8.604890 GGCTTTATTCAGTGACAATAGTACTTC 58.395 37.037 0.00 0.00 0.00 3.01
2212 3331 1.682854 CCATTGCTTGAACACACCTGT 59.317 47.619 0.00 0.00 0.00 4.00
2219 3338 5.555966 TGCTTGAACACACCTGTCATTATA 58.444 37.500 0.00 0.00 0.00 0.98
2232 3351 7.485913 CACCTGTCATTATAACAATCTTTGCAC 59.514 37.037 0.00 0.00 0.00 4.57
2278 3397 1.341209 TGCTCAGTCAGAACATGTCGT 59.659 47.619 0.00 0.00 0.00 4.34
2487 3608 2.284190 GCCTTCTCGGATTCCTTTCTG 58.716 52.381 0.30 0.00 33.16 3.02
2502 3623 3.594134 CTTTCTGTACAGGCTTCTGAGG 58.406 50.000 22.48 0.00 40.86 3.86
2611 3733 9.070149 GTATCTTTTCATGCAATCTCACTTTTC 57.930 33.333 0.00 0.00 0.00 2.29
2721 3875 6.975772 TGGTATGTGCTTTAACTTTGACAAAC 59.024 34.615 0.00 0.00 0.00 2.93
2788 3943 6.036735 TCGTCTTTTGAAGTTTGTAGTTCAGG 59.963 38.462 0.00 0.00 42.90 3.86
2807 3962 8.040727 AGTTCAGGCTTTGTTTTGAAATAACTT 58.959 29.630 0.00 0.00 31.98 2.66
2808 3963 8.328146 GTTCAGGCTTTGTTTTGAAATAACTTC 58.672 33.333 0.00 0.00 31.98 3.01
2817 3975 8.835467 TGTTTTGAAATAACTTCTCAACTTCG 57.165 30.769 0.00 0.00 34.86 3.79
2818 3976 8.670135 TGTTTTGAAATAACTTCTCAACTTCGA 58.330 29.630 0.00 0.00 34.86 3.71
2819 3977 8.944927 GTTTTGAAATAACTTCTCAACTTCGAC 58.055 33.333 0.00 0.00 34.86 4.20
2933 4149 6.371271 CCTTCAACCAAACAGTTTGAAAATGT 59.629 34.615 25.08 12.28 43.26 2.71
2954 4170 0.330604 ATGCAGCACCCTGAGAATGT 59.669 50.000 0.00 0.00 41.77 2.71
2955 4171 0.321919 TGCAGCACCCTGAGAATGTC 60.322 55.000 0.00 0.00 41.77 3.06
2962 4178 4.972875 CTGAGAATGTCAGCCCCC 57.027 61.111 0.00 0.00 46.41 5.40
2964 4180 0.329261 CTGAGAATGTCAGCCCCCAA 59.671 55.000 0.00 0.00 46.41 4.12
2965 4181 0.038166 TGAGAATGTCAGCCCCCAAC 59.962 55.000 0.00 0.00 0.00 3.77
2967 4183 0.329596 AGAATGTCAGCCCCCAACTC 59.670 55.000 0.00 0.00 0.00 3.01
2968 4184 0.329596 GAATGTCAGCCCCCAACTCT 59.670 55.000 0.00 0.00 0.00 3.24
2970 4186 1.566298 ATGTCAGCCCCCAACTCTCC 61.566 60.000 0.00 0.00 0.00 3.71
2971 4187 3.003173 TCAGCCCCCAACTCTCCG 61.003 66.667 0.00 0.00 0.00 4.63
3049 4532 0.333993 AAAGCATCTGGGAGGCACAT 59.666 50.000 6.93 0.00 42.11 3.21
3087 4572 8.188799 CAGTGCATTTGAGAATTGTTCTGATAT 58.811 33.333 0.00 0.00 40.87 1.63
3095 4580 8.078060 TGAGAATTGTTCTGATATACACCTGA 57.922 34.615 0.00 0.00 40.87 3.86
3116 4601 9.449719 ACCTGATTAAGTAGTGTTAAATTCCAG 57.550 33.333 0.00 0.00 0.00 3.86
3134 4619 3.692101 TCCAGTTGTTGTTCGTTGTCATT 59.308 39.130 0.00 0.00 0.00 2.57
3166 4651 4.024218 CCTCTAGCATTGCAGCATAAAGTC 60.024 45.833 11.91 0.00 36.85 3.01
3167 4652 4.774124 TCTAGCATTGCAGCATAAAGTCT 58.226 39.130 11.91 0.00 36.85 3.24
3172 4657 5.183713 AGCATTGCAGCATAAAGTCTAAACA 59.816 36.000 11.91 0.00 36.85 2.83
3176 4661 8.615211 CATTGCAGCATAAAGTCTAAACAGATA 58.385 33.333 0.00 0.00 0.00 1.98
3192 4677 9.195411 CTAAACAGATAAATTGCATTGTGTGTT 57.805 29.630 6.52 6.52 31.32 3.32
3220 4705 1.668047 GGTTTGCTGATGTGCTGAAGC 60.668 52.381 0.00 0.00 42.50 3.86
3247 4732 3.569194 TGTGCTTTCAGGGTCAACTTA 57.431 42.857 0.00 0.00 0.00 2.24
3249 4734 5.235850 TGTGCTTTCAGGGTCAACTTATA 57.764 39.130 0.00 0.00 0.00 0.98
3285 4770 5.237236 TGGTTCCACCTTCCTTTACTAAG 57.763 43.478 0.00 0.00 39.58 2.18
3393 4878 2.634940 CAACGAGGATGATGGGAGGTAT 59.365 50.000 0.00 0.00 0.00 2.73
3409 4894 2.363680 AGGTATGAGATGGACAGCTTCG 59.636 50.000 0.00 0.00 0.00 3.79
3417 4902 2.098831 GGACAGCTTCGGCCGTAAC 61.099 63.158 27.15 11.64 43.01 2.50
3465 4950 7.412137 TGATGTTGATGAATATGATGACGAC 57.588 36.000 0.00 0.00 0.00 4.34
3466 4951 5.888412 TGTTGATGAATATGATGACGACG 57.112 39.130 0.00 0.00 0.00 5.12
3467 4952 5.587289 TGTTGATGAATATGATGACGACGA 58.413 37.500 0.00 0.00 0.00 4.20
3490 4984 1.329906 ACGACGATGATGACGAGTACC 59.670 52.381 0.00 0.00 34.70 3.34
3554 5048 1.004044 ACTTCCAGATGTGCTCCCTTG 59.996 52.381 0.00 0.00 0.00 3.61
3555 5049 0.322816 TTCCAGATGTGCTCCCTTGC 60.323 55.000 0.00 0.00 0.00 4.01
3587 5082 4.522405 TGTGTTGTCTTCCCATATTGTTGG 59.478 41.667 0.00 0.00 36.46 3.77
3590 5085 3.355378 TGTCTTCCCATATTGTTGGCTG 58.645 45.455 0.00 0.00 35.29 4.85
3608 5103 3.010420 GCTGGAAAGTAAGTAGGGCAAG 58.990 50.000 0.00 0.00 0.00 4.01
3626 5121 5.106118 GGGCAAGAAGTAGAAGAATTGAACC 60.106 44.000 0.00 0.00 0.00 3.62
3655 5151 0.743688 TTGAAAAGAAGCTGGCGCAA 59.256 45.000 10.83 0.00 39.10 4.85
3736 5240 4.964262 ACCCATGATCTTATTGGTGCATTT 59.036 37.500 0.00 0.00 0.00 2.32
3737 5241 6.135454 ACCCATGATCTTATTGGTGCATTTA 58.865 36.000 0.00 0.00 0.00 1.40
3782 5291 5.574443 GGTGCTTATTTGCTTTGTCAGAATC 59.426 40.000 0.00 0.00 0.00 2.52
3783 5292 6.385033 GTGCTTATTTGCTTTGTCAGAATCT 58.615 36.000 0.00 0.00 0.00 2.40
3830 5344 3.938963 TGGAAAATGTCGCATACTCCTTC 59.061 43.478 14.99 6.16 0.00 3.46
3846 5363 1.148310 CTTCGTACAACAGCACTGGG 58.852 55.000 2.21 0.00 34.19 4.45
3847 5364 0.882927 TTCGTACAACAGCACTGGGC 60.883 55.000 0.00 0.00 45.30 5.36
3856 5373 3.677648 GCACTGGGCTGGTTGCAG 61.678 66.667 0.00 0.00 45.15 4.41
3907 5425 6.153680 AGTGTTAAACTCCCAAAATCACACAA 59.846 34.615 0.00 0.00 31.64 3.33
3908 5426 6.814146 GTGTTAAACTCCCAAAATCACACAAA 59.186 34.615 0.00 0.00 33.68 2.83
3918 5436 5.977129 CCAAAATCACACAAAGGTACAGAAC 59.023 40.000 0.00 0.00 0.00 3.01
3919 5437 6.183360 CCAAAATCACACAAAGGTACAGAACT 60.183 38.462 0.00 0.00 0.00 3.01
3920 5438 6.377327 AAATCACACAAAGGTACAGAACTG 57.623 37.500 0.00 0.00 0.00 3.16
3921 5439 3.202906 TCACACAAAGGTACAGAACTGC 58.797 45.455 1.46 0.00 0.00 4.40
3922 5440 3.118408 TCACACAAAGGTACAGAACTGCT 60.118 43.478 1.46 0.00 0.00 4.24
3923 5441 3.248602 CACACAAAGGTACAGAACTGCTC 59.751 47.826 1.46 0.00 0.00 4.26
3924 5442 2.808543 CACAAAGGTACAGAACTGCTCC 59.191 50.000 1.46 5.03 0.00 4.70
3925 5443 2.224548 ACAAAGGTACAGAACTGCTCCC 60.225 50.000 1.46 0.14 0.00 4.30
3926 5444 2.031495 AAGGTACAGAACTGCTCCCT 57.969 50.000 1.46 2.35 0.00 4.20
3927 5445 1.562783 AGGTACAGAACTGCTCCCTC 58.437 55.000 1.46 0.00 0.00 4.30
3928 5446 1.077993 AGGTACAGAACTGCTCCCTCT 59.922 52.381 1.46 0.00 0.00 3.69
3929 5447 1.205893 GGTACAGAACTGCTCCCTCTG 59.794 57.143 1.46 0.00 41.93 3.35
3930 5448 3.155897 ACAGAACTGCTCCCTCTGT 57.844 52.632 1.46 0.00 43.84 3.41
3931 5449 2.310779 ACAGAACTGCTCCCTCTGTA 57.689 50.000 2.22 0.00 46.11 2.74
3932 5450 2.609747 ACAGAACTGCTCCCTCTGTAA 58.390 47.619 2.22 0.00 46.11 2.41
3933 5451 2.300437 ACAGAACTGCTCCCTCTGTAAC 59.700 50.000 2.22 0.00 46.11 2.50
3934 5452 2.564947 CAGAACTGCTCCCTCTGTAACT 59.435 50.000 0.00 0.00 33.39 2.24
3935 5453 3.007398 CAGAACTGCTCCCTCTGTAACTT 59.993 47.826 0.00 0.00 33.39 2.66
3936 5454 4.220821 CAGAACTGCTCCCTCTGTAACTTA 59.779 45.833 0.00 0.00 33.39 2.24
3937 5455 4.838986 AGAACTGCTCCCTCTGTAACTTAA 59.161 41.667 0.00 0.00 0.00 1.85
3938 5456 5.485708 AGAACTGCTCCCTCTGTAACTTAAT 59.514 40.000 0.00 0.00 0.00 1.40
3939 5457 6.668283 AGAACTGCTCCCTCTGTAACTTAATA 59.332 38.462 0.00 0.00 0.00 0.98
3940 5458 7.345914 AGAACTGCTCCCTCTGTAACTTAATAT 59.654 37.037 0.00 0.00 0.00 1.28
3941 5459 8.548880 AACTGCTCCCTCTGTAACTTAATATA 57.451 34.615 0.00 0.00 0.00 0.86
3942 5460 8.548880 ACTGCTCCCTCTGTAACTTAATATAA 57.451 34.615 0.00 0.00 0.00 0.98
3943 5461 8.643324 ACTGCTCCCTCTGTAACTTAATATAAG 58.357 37.037 0.00 0.00 0.00 1.73
3944 5462 8.777578 TGCTCCCTCTGTAACTTAATATAAGA 57.222 34.615 4.24 0.00 0.00 2.10
3945 5463 8.639761 TGCTCCCTCTGTAACTTAATATAAGAC 58.360 37.037 4.24 0.00 0.00 3.01
3946 5464 8.639761 GCTCCCTCTGTAACTTAATATAAGACA 58.360 37.037 4.24 0.00 0.00 3.41
4015 5533 9.046846 TCTTTCATTGATAGGGAGAAGAGTTTA 57.953 33.333 4.57 0.00 0.00 2.01
4016 5534 9.103861 CTTTCATTGATAGGGAGAAGAGTTTAC 57.896 37.037 0.00 0.00 0.00 2.01
4033 5551 6.267014 AGAGTTTACAGTACAAGAGCAGGTAA 59.733 38.462 0.00 0.00 0.00 2.85
4037 5555 4.097418 ACAGTACAAGAGCAGGTAAGGAT 58.903 43.478 0.00 0.00 0.00 3.24
4042 5560 3.330701 ACAAGAGCAGGTAAGGATGGAAA 59.669 43.478 0.00 0.00 0.00 3.13
4099 5617 0.680618 CCTAGCCTGAGCATGGAGAG 59.319 60.000 0.00 0.00 43.56 3.20
4210 5728 0.826715 CCTCGTCCTGGATGTCATGT 59.173 55.000 15.28 0.00 0.00 3.21
4323 5841 4.697756 TCCTTTCCGGTGCGCCAG 62.698 66.667 18.18 4.83 34.09 4.85
4492 6010 3.071206 GCCTGGTCGCAGAGGAGA 61.071 66.667 0.00 0.00 36.95 3.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 1.318380 GGGATGAGGGAGGAGGGAA 59.682 63.158 0.00 0.00 0.00 3.97
49 53 3.092301 GGAAAAAGATTGAGGAGGGTGG 58.908 50.000 0.00 0.00 0.00 4.61
51 55 2.996742 AGGGAAAAAGATTGAGGAGGGT 59.003 45.455 0.00 0.00 0.00 4.34
146 166 4.859304 AATCAAGCAAGCACTCATCAAA 57.141 36.364 0.00 0.00 0.00 2.69
171 194 2.012673 CCTCTAAACATGCTGCACTCC 58.987 52.381 3.57 0.00 0.00 3.85
179 202 5.713025 TCAAGCAAAATCCTCTAAACATGC 58.287 37.500 0.00 0.00 0.00 4.06
180 203 8.133627 CCTATCAAGCAAAATCCTCTAAACATG 58.866 37.037 0.00 0.00 0.00 3.21
181 204 7.201857 GCCTATCAAGCAAAATCCTCTAAACAT 60.202 37.037 0.00 0.00 0.00 2.71
183 206 6.499172 GCCTATCAAGCAAAATCCTCTAAAC 58.501 40.000 0.00 0.00 0.00 2.01
184 207 5.296780 CGCCTATCAAGCAAAATCCTCTAAA 59.703 40.000 0.00 0.00 0.00 1.85
185 208 4.816385 CGCCTATCAAGCAAAATCCTCTAA 59.184 41.667 0.00 0.00 0.00 2.10
186 209 4.141711 ACGCCTATCAAGCAAAATCCTCTA 60.142 41.667 0.00 0.00 0.00 2.43
266 315 6.189677 TGTTTAAACCAAAGCATATCCTCG 57.810 37.500 15.59 0.00 0.00 4.63
270 319 8.807581 GCTAACATGTTTAAACCAAAGCATATC 58.192 33.333 17.78 0.00 0.00 1.63
272 321 7.661968 TGCTAACATGTTTAAACCAAAGCATA 58.338 30.769 17.78 0.00 0.00 3.14
276 325 7.199766 TCACTGCTAACATGTTTAAACCAAAG 58.800 34.615 17.78 6.39 0.00 2.77
305 354 8.248117 TCATATATCGTCAATCATTTCTGCAG 57.752 34.615 7.63 7.63 0.00 4.41
352 402 4.082026 GCTTTGGTTTCAGGTGCAGATAAT 60.082 41.667 0.00 0.00 0.00 1.28
427 507 3.857665 CACTAGTACTAATGTGTGCACCG 59.142 47.826 15.69 0.00 0.00 4.94
459 551 6.903516 ACAAGATTTGGGATGTCTATCATGA 58.096 36.000 0.00 0.00 34.90 3.07
604 709 1.675483 TCATGGCATAACACGAATGGC 59.325 47.619 0.00 2.95 46.90 4.40
607 712 6.233434 ACATCTATCATGGCATAACACGAAT 58.767 36.000 0.00 0.00 0.00 3.34
680 786 9.185680 TCAAAAGGGGTAGAATTAGATTTTAGC 57.814 33.333 0.00 0.00 0.00 3.09
704 811 2.422803 CCCTGTTCCAACTCCAAGTTCA 60.423 50.000 0.00 0.00 36.03 3.18
902 1033 7.132863 CCGATATGGATACGTGTATCAGTATG 58.867 42.308 18.79 11.17 42.76 2.39
1143 1274 1.826024 CTTCCTGATGCCGTAGCCT 59.174 57.895 0.00 0.00 38.69 4.58
1213 1344 2.165998 ACAAGGCTTTGATCAAGGAGC 58.834 47.619 20.77 20.11 37.73 4.70
1219 1350 3.631250 GGGGAATACAAGGCTTTGATCA 58.369 45.455 16.36 0.00 37.73 2.92
1231 1362 0.461163 CACATCGCACGGGGAATACA 60.461 55.000 0.00 0.00 0.00 2.29
1269 1400 1.198713 AGTGAATCAGATCGGCACCT 58.801 50.000 7.17 0.00 0.00 4.00
1297 1428 5.890110 ACATTTCTTCGTATACGCATCAG 57.110 39.130 20.42 12.57 39.60 2.90
1309 1440 7.481798 GCTCATACCAACTTAAACATTTCTTCG 59.518 37.037 0.00 0.00 0.00 3.79
1335 1466 3.902261 AAACGGTAAAAGGCCTAAACG 57.098 42.857 5.16 12.47 0.00 3.60
1348 1479 1.489649 TCACCAAGACCCAAAACGGTA 59.510 47.619 0.00 0.00 35.79 4.02
1349 1480 0.256464 TCACCAAGACCCAAAACGGT 59.744 50.000 0.00 0.00 39.49 4.83
1350 1481 1.269448 CATCACCAAGACCCAAAACGG 59.731 52.381 0.00 0.00 0.00 4.44
1436 1573 1.615424 ACCGAGGCCAATACCCACT 60.615 57.895 5.01 0.00 0.00 4.00
1612 1771 2.991250 ACCCCAGAATGTGAAAGATCG 58.009 47.619 0.00 0.00 0.00 3.69
1623 1782 5.536497 AGAATACTTCCAAACCCCAGAAT 57.464 39.130 0.00 0.00 0.00 2.40
1635 1794 4.141937 GCCATTTTCCCCAAGAATACTTCC 60.142 45.833 0.00 0.00 33.44 3.46
1690 1849 1.098050 CAGAAGGGCAATGCTACCAC 58.902 55.000 4.82 0.00 0.00 4.16
1783 2122 3.209410 GCAGTGATATGTAAGCAAGCCT 58.791 45.455 0.00 0.00 0.00 4.58
1855 2203 2.260869 ACCACTGAACCATGTGCGC 61.261 57.895 0.00 0.00 33.26 6.09
1889 2261 2.101249 CTGTGTGTTGGCCATTTGAACT 59.899 45.455 6.09 0.00 0.00 3.01
1918 2290 2.058595 AGTGATTCGAGGGGTCCGG 61.059 63.158 0.00 0.00 0.00 5.14
1942 2329 1.714794 AACTTGAAGAGGCGACATCG 58.285 50.000 0.00 0.00 43.27 3.84
1948 2335 3.307242 CCGAGAATAAACTTGAAGAGGCG 59.693 47.826 0.00 0.00 0.00 5.52
1951 2338 5.409826 ACTTGCCGAGAATAAACTTGAAGAG 59.590 40.000 0.00 0.00 0.00 2.85
1960 2347 4.072131 AGCTTGAACTTGCCGAGAATAAA 58.928 39.130 0.00 0.00 0.00 1.40
1977 3020 6.539826 TCATAACCATCACTGTGATAAGCTTG 59.460 38.462 21.88 16.15 34.28 4.01
1978 3021 6.653020 TCATAACCATCACTGTGATAAGCTT 58.347 36.000 21.88 3.48 34.28 3.74
1988 3035 4.081476 TGGACAGACTCATAACCATCACTG 60.081 45.833 0.00 0.00 0.00 3.66
1990 3037 4.471904 TGGACAGACTCATAACCATCAC 57.528 45.455 0.00 0.00 0.00 3.06
1996 3043 4.184629 GTGGTCATGGACAGACTCATAAC 58.815 47.826 0.00 0.00 36.29 1.89
2004 3051 4.074259 CAAAGAATGTGGTCATGGACAGA 58.926 43.478 0.00 0.00 33.68 3.41
2142 3196 7.889873 AGATAGCAGAAGTACTATTGTCACT 57.110 36.000 0.00 0.00 0.00 3.41
2158 3277 9.123709 GAAACTTGTTCTCGATATAGATAGCAG 57.876 37.037 0.00 0.00 0.00 4.24
2212 3331 7.123997 ACCATGGTGCAAAGATTGTTATAATGA 59.876 33.333 18.99 0.00 0.00 2.57
2219 3338 2.964464 TGACCATGGTGCAAAGATTGTT 59.036 40.909 25.52 0.00 0.00 2.83
2266 3385 0.036952 AGGCCTCACGACATGTTCTG 60.037 55.000 0.00 0.00 0.00 3.02
2267 3386 0.247736 GAGGCCTCACGACATGTTCT 59.752 55.000 28.43 0.00 0.00 3.01
2477 3598 4.287067 TCAGAAGCCTGTACAGAAAGGAAT 59.713 41.667 24.68 2.97 41.16 3.01
2487 3608 2.111384 TGATCCCTCAGAAGCCTGTAC 58.889 52.381 0.00 0.00 41.16 2.90
2528 3649 1.999648 AGCCTGCACATCAAAGGAAA 58.000 45.000 0.00 0.00 32.43 3.13
2611 3733 6.337853 GACTCAAGGTCAGATTCAATTACG 57.662 41.667 0.00 0.00 43.94 3.18
2660 3802 7.111139 CACTGTTAATTATTCAGTAACTCGCG 58.889 38.462 17.50 0.00 39.89 5.87
2662 3804 8.475331 ACCACTGTTAATTATTCAGTAACTCG 57.525 34.615 17.50 9.35 39.89 4.18
2721 3875 2.951642 ACTGGAAATGGTGTGTTCACAG 59.048 45.455 5.85 0.00 45.45 3.66
2756 3910 5.207768 CAAACTTCAAAAGACGAGGATGTG 58.792 41.667 0.00 0.00 0.00 3.21
2757 3911 4.881850 ACAAACTTCAAAAGACGAGGATGT 59.118 37.500 0.00 0.00 0.00 3.06
2788 3943 9.087424 AGTTGAGAAGTTATTTCAAAACAAAGC 57.913 29.630 7.57 0.00 38.31 3.51
2807 3962 3.824443 TCACTGTATGGTCGAAGTTGAGA 59.176 43.478 0.00 0.00 0.00 3.27
2808 3963 3.921021 GTCACTGTATGGTCGAAGTTGAG 59.079 47.826 0.00 0.00 0.00 3.02
2817 3975 4.142160 TGACATAGCAGTCACTGTATGGTC 60.142 45.833 21.53 17.22 43.18 4.02
2818 3976 3.769300 TGACATAGCAGTCACTGTATGGT 59.231 43.478 21.53 11.23 43.18 3.55
2819 3977 4.142071 ACTGACATAGCAGTCACTGTATGG 60.142 45.833 21.53 12.33 45.54 2.74
2933 4149 2.025981 ACATTCTCAGGGTGCTGCATTA 60.026 45.455 5.27 0.00 0.00 1.90
2954 4170 2.822643 ATCGGAGAGTTGGGGGCTGA 62.823 60.000 0.00 0.00 43.63 4.26
2955 4171 1.048724 TATCGGAGAGTTGGGGGCTG 61.049 60.000 0.00 0.00 43.63 4.85
2958 4174 1.134189 GGTTTATCGGAGAGTTGGGGG 60.134 57.143 0.00 0.00 43.63 5.40
2959 4175 1.838077 AGGTTTATCGGAGAGTTGGGG 59.162 52.381 0.00 0.00 43.63 4.96
2960 4176 3.270877 CAAGGTTTATCGGAGAGTTGGG 58.729 50.000 0.00 0.00 43.63 4.12
2961 4177 3.055385 TCCAAGGTTTATCGGAGAGTTGG 60.055 47.826 0.00 0.00 43.63 3.77
2962 4178 3.933332 GTCCAAGGTTTATCGGAGAGTTG 59.067 47.826 0.00 0.00 43.63 3.16
2964 4180 2.500504 GGTCCAAGGTTTATCGGAGAGT 59.499 50.000 0.00 0.00 43.63 3.24
2965 4181 2.500098 TGGTCCAAGGTTTATCGGAGAG 59.500 50.000 0.00 0.00 43.63 3.20
2967 4183 3.343941 TTGGTCCAAGGTTTATCGGAG 57.656 47.619 0.00 0.00 0.00 4.63
2968 4184 3.791953 TTTGGTCCAAGGTTTATCGGA 57.208 42.857 4.09 0.00 0.00 4.55
2970 4186 5.878116 TCACTATTTGGTCCAAGGTTTATCG 59.122 40.000 4.09 0.00 0.00 2.92
2971 4187 7.110155 TCTCACTATTTGGTCCAAGGTTTATC 58.890 38.462 4.09 0.00 0.00 1.75
3116 4601 5.575218 AGGAAAAATGACAACGAACAACAAC 59.425 36.000 0.00 0.00 0.00 3.32
3166 4651 8.746922 ACACACAATGCAATTTATCTGTTTAG 57.253 30.769 0.00 0.00 31.22 1.85
3167 4652 8.976471 CAACACACAATGCAATTTATCTGTTTA 58.024 29.630 0.00 0.00 31.22 2.01
3172 4657 6.985117 AGACAACACACAATGCAATTTATCT 58.015 32.000 0.00 0.00 31.22 1.98
3176 4661 4.099881 AGGAGACAACACACAATGCAATTT 59.900 37.500 0.00 0.00 31.22 1.82
3192 4677 1.421268 ACATCAGCAAACCAGGAGACA 59.579 47.619 0.00 0.00 0.00 3.41
3220 4705 1.283793 CCTGAAAGCACAACGGCAG 59.716 57.895 0.00 0.00 35.83 4.85
3285 4770 5.488341 TCCTTGTTTAGATAGTGCAGTTCC 58.512 41.667 0.00 0.00 0.00 3.62
3384 4869 2.682594 CTGTCCATCTCATACCTCCCA 58.317 52.381 0.00 0.00 0.00 4.37
3393 4878 1.219124 GCCGAAGCTGTCCATCTCA 59.781 57.895 0.00 0.00 35.50 3.27
3409 4894 1.475682 AGTACTAGCAGTGTTACGGCC 59.524 52.381 0.00 0.00 40.20 6.13
3417 4902 6.141560 TCATCATCTTGAGTACTAGCAGTG 57.858 41.667 0.00 0.00 0.00 3.66
3465 4950 1.247261 CGTCATCATCGTCGTCGTCG 61.247 60.000 5.50 5.50 38.33 5.12
3466 4951 0.025898 TCGTCATCATCGTCGTCGTC 59.974 55.000 1.33 0.00 38.33 4.20
3467 4952 0.026414 CTCGTCATCATCGTCGTCGT 59.974 55.000 1.33 0.00 38.33 4.34
3490 4984 1.698506 ATCTACTCTTCCTCGGCCTG 58.301 55.000 0.00 0.00 0.00 4.85
3554 5048 3.365364 GGAAGACAACACATACTGCTTGC 60.365 47.826 0.00 0.00 0.00 4.01
3555 5049 3.189287 GGGAAGACAACACATACTGCTTG 59.811 47.826 0.00 0.00 0.00 4.01
3587 5082 2.781681 TGCCCTACTTACTTTCCAGC 57.218 50.000 0.00 0.00 0.00 4.85
3590 5085 4.907809 ACTTCTTGCCCTACTTACTTTCC 58.092 43.478 0.00 0.00 0.00 3.13
3608 5103 5.123027 CAGCCAGGTTCAATTCTTCTACTTC 59.877 44.000 0.00 0.00 0.00 3.01
3626 5121 4.269363 CAGCTTCTTTTCAAAAACAGCCAG 59.731 41.667 8.68 1.00 32.95 4.85
3655 5151 4.595762 ACATGCAAAATCAGCTTTCAGT 57.404 36.364 0.00 0.00 0.00 3.41
3782 5291 8.578308 TGTTTTGCAAATCTCTTTCACAATAG 57.422 30.769 13.65 0.00 0.00 1.73
3783 5292 8.980610 CATGTTTTGCAAATCTCTTTCACAATA 58.019 29.630 13.65 0.00 0.00 1.90
3815 5329 2.086094 TGTACGAAGGAGTATGCGACA 58.914 47.619 0.00 0.00 0.00 4.35
3817 5331 2.488937 TGTTGTACGAAGGAGTATGCGA 59.511 45.455 0.00 0.00 0.00 5.10
3818 5332 2.852413 CTGTTGTACGAAGGAGTATGCG 59.148 50.000 0.00 0.00 0.00 4.73
3830 5344 3.253955 GCCCAGTGCTGTTGTACG 58.746 61.111 0.00 0.00 36.87 3.67
3846 5363 3.096489 TGATGAAAAACTGCAACCAGC 57.904 42.857 0.00 0.00 43.02 4.85
3847 5364 8.246180 ACTATATTGATGAAAAACTGCAACCAG 58.754 33.333 0.00 0.00 44.80 4.00
3884 5402 6.531503 TTGTGTGATTTTGGGAGTTTAACA 57.468 33.333 0.00 0.00 0.00 2.41
3886 5404 6.155393 ACCTTTGTGTGATTTTGGGAGTTTAA 59.845 34.615 0.00 0.00 0.00 1.52
3900 5418 3.118408 AGCAGTTCTGTACCTTTGTGTGA 60.118 43.478 1.78 0.00 0.00 3.58
3907 5425 1.903183 GAGGGAGCAGTTCTGTACCTT 59.097 52.381 11.14 7.31 0.00 3.50
3908 5426 1.077993 AGAGGGAGCAGTTCTGTACCT 59.922 52.381 10.16 10.16 0.00 3.08
3918 5436 8.861086 TCTTATATTAAGTTACAGAGGGAGCAG 58.139 37.037 0.00 0.00 0.00 4.24
3919 5437 8.639761 GTCTTATATTAAGTTACAGAGGGAGCA 58.360 37.037 0.00 0.00 0.00 4.26
3920 5438 8.639761 TGTCTTATATTAAGTTACAGAGGGAGC 58.360 37.037 0.00 0.00 0.00 4.70
4015 5533 3.507411 TCCTTACCTGCTCTTGTACTGT 58.493 45.455 0.00 0.00 0.00 3.55
4016 5534 4.437239 CATCCTTACCTGCTCTTGTACTG 58.563 47.826 0.00 0.00 0.00 2.74
4033 5551 2.024941 CCAGGCCTAGTTTTTCCATCCT 60.025 50.000 3.98 0.00 0.00 3.24
4037 5555 0.251608 GCCCAGGCCTAGTTTTTCCA 60.252 55.000 3.98 0.00 34.56 3.53
4042 5560 1.600638 GTACGCCCAGGCCTAGTTT 59.399 57.895 3.98 0.00 37.98 2.66
4065 5583 2.280823 CTAGGTCCAGACGCCGTTCC 62.281 65.000 0.00 0.00 0.00 3.62
4076 5594 1.340399 CCATGCTCAGGCTAGGTCCA 61.340 60.000 0.00 0.00 39.59 4.02
4099 5617 1.751563 GGCTGAGCATCCCCTAGTC 59.248 63.158 6.82 0.00 0.00 2.59
4134 5652 3.392285 AGCACTCATCATACCATAGGCAA 59.608 43.478 0.00 0.00 0.00 4.52
4141 5659 3.780294 AGGGTTTAGCACTCATCATACCA 59.220 43.478 0.00 0.00 0.00 3.25
4195 5713 2.831333 CTGCTACATGACATCCAGGAC 58.169 52.381 0.00 0.00 0.00 3.85
4210 5728 2.224378 GCCATCTACATCCAAGCTGCTA 60.224 50.000 0.90 0.00 0.00 3.49
4252 5770 2.839486 TCTGGAAACATCGCAACTCT 57.161 45.000 0.00 0.00 41.51 3.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.