Multiple sequence alignment - TraesCS7A01G492600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G492600 chr7A 100.000 1184 0 0 763 1946 681579502 681580685 0.000000e+00 2187.0
1 TraesCS7A01G492600 chr7A 100.000 1084 0 0 2364 3447 681581103 681582186 0.000000e+00 2002.0
2 TraesCS7A01G492600 chr7A 92.657 926 45 9 763 1671 681614430 681613511 0.000000e+00 1312.0
3 TraesCS7A01G492600 chr7A 100.000 672 0 0 1 672 681578740 681579411 0.000000e+00 1242.0
4 TraesCS7A01G492600 chr7A 93.732 686 13 5 1 659 681615360 681614678 0.000000e+00 1002.0
5 TraesCS7A01G492600 chr7A 85.350 942 72 29 763 1672 681387171 681388078 0.000000e+00 915.0
6 TraesCS7A01G492600 chr7A 85.072 690 79 11 999 1670 681260662 681261345 0.000000e+00 682.0
7 TraesCS7A01G492600 chr7A 81.739 805 128 12 2646 3438 429474761 429473964 0.000000e+00 654.0
8 TraesCS7A01G492600 chr7A 78.876 516 47 26 16 524 681697585 681697125 3.360000e-75 292.0
9 TraesCS7A01G492600 chr7A 80.045 441 39 25 2 428 681386381 681386786 7.280000e-72 281.0
10 TraesCS7A01G492600 chr7D 87.127 1173 99 27 763 1907 589857755 589858903 0.000000e+00 1282.0
11 TraesCS7A01G492600 chr7D 85.046 1090 95 38 763 1803 589869467 589868397 0.000000e+00 1048.0
12 TraesCS7A01G492600 chr7D 83.306 1204 111 42 763 1922 590064270 590063113 0.000000e+00 1027.0
13 TraesCS7A01G492600 chr7D 82.265 936 97 37 765 1670 590330256 590329360 0.000000e+00 745.0
14 TraesCS7A01G492600 chr7D 82.360 805 121 14 2645 3439 381346725 381345932 0.000000e+00 680.0
15 TraesCS7A01G492600 chr7D 84.288 681 87 12 2708 3379 93602427 93601758 0.000000e+00 647.0
16 TraesCS7A01G492600 chr7D 80.116 518 41 33 2 515 589857048 589857507 2.560000e-86 329.0
17 TraesCS7A01G492600 chr7D 79.218 409 36 22 2 386 590065007 590064624 4.450000e-59 239.0
18 TraesCS7A01G492600 chr7B 86.702 1143 84 34 763 1883 664797146 664798242 0.000000e+00 1206.0
19 TraesCS7A01G492600 chr7B 88.780 918 61 26 763 1668 664936515 664937402 0.000000e+00 1086.0
20 TraesCS7A01G492600 chr7B 86.952 889 83 18 929 1807 664969516 664968651 0.000000e+00 968.0
21 TraesCS7A01G492600 chr7B 83.499 503 48 21 2 504 664353243 664353710 1.470000e-118 436.0
22 TraesCS7A01G492600 chr7B 84.691 405 41 10 1266 1670 665284269 665283886 5.400000e-103 385.0
23 TraesCS7A01G492600 chr7B 82.493 377 35 17 2 378 664325329 664325674 5.590000e-78 302.0
24 TraesCS7A01G492600 chr7B 81.356 295 29 18 242 524 664977317 664977037 2.080000e-52 217.0
25 TraesCS7A01G492600 chr7B 79.866 298 24 14 2 295 664796343 664796608 5.870000e-43 185.0
26 TraesCS7A01G492600 chr7B 94.186 86 5 0 763 848 664353998 664354083 7.760000e-27 132.0
27 TraesCS7A01G492600 chr7B 86.275 102 7 3 786 887 664976791 664976697 1.690000e-18 104.0
28 TraesCS7A01G492600 chr7B 96.970 33 1 0 238 270 665285527 665285495 4.810000e-04 56.5
29 TraesCS7A01G492600 chr5D 82.491 811 105 16 2634 3438 77747115 77747894 0.000000e+00 676.0
30 TraesCS7A01G492600 chr5D 85.333 75 5 4 2565 2634 352451321 352451248 4.770000e-09 73.1
31 TraesCS7A01G492600 chr2D 83.866 688 95 11 2640 3319 159863757 159863078 2.900000e-180 641.0
32 TraesCS7A01G492600 chr2D 86.179 123 13 3 2520 2638 603137034 603136912 2.790000e-26 130.0
33 TraesCS7A01G492600 chr2B 85.882 595 74 5 2709 3294 37357062 37356469 2.920000e-175 625.0
34 TraesCS7A01G492600 chr5B 84.275 655 86 9 2794 3439 87302510 87303156 1.050000e-174 623.0
35 TraesCS7A01G492600 chr5B 84.161 644 80 13 2633 3265 498811526 498812158 3.810000e-169 604.0
36 TraesCS7A01G492600 chr4B 80.026 761 131 13 2635 3388 667224194 667224940 8.410000e-151 544.0
37 TraesCS7A01G492600 chr3A 87.838 74 8 1 2562 2634 616488983 616489056 6.130000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G492600 chr7A 681578740 681582186 3446 False 1810.333333 2187 100.0000 1 3447 3 chr7A.!!$F3 3446
1 TraesCS7A01G492600 chr7A 681613511 681615360 1849 True 1157.000000 1312 93.1945 1 1671 2 chr7A.!!$R3 1670
2 TraesCS7A01G492600 chr7A 681260662 681261345 683 False 682.000000 682 85.0720 999 1670 1 chr7A.!!$F1 671
3 TraesCS7A01G492600 chr7A 429473964 429474761 797 True 654.000000 654 81.7390 2646 3438 1 chr7A.!!$R1 792
4 TraesCS7A01G492600 chr7A 681386381 681388078 1697 False 598.000000 915 82.6975 2 1672 2 chr7A.!!$F2 1670
5 TraesCS7A01G492600 chr7D 589868397 589869467 1070 True 1048.000000 1048 85.0460 763 1803 1 chr7D.!!$R3 1040
6 TraesCS7A01G492600 chr7D 589857048 589858903 1855 False 805.500000 1282 83.6215 2 1907 2 chr7D.!!$F1 1905
7 TraesCS7A01G492600 chr7D 590329360 590330256 896 True 745.000000 745 82.2650 765 1670 1 chr7D.!!$R4 905
8 TraesCS7A01G492600 chr7D 381345932 381346725 793 True 680.000000 680 82.3600 2645 3439 1 chr7D.!!$R2 794
9 TraesCS7A01G492600 chr7D 93601758 93602427 669 True 647.000000 647 84.2880 2708 3379 1 chr7D.!!$R1 671
10 TraesCS7A01G492600 chr7D 590063113 590065007 1894 True 633.000000 1027 81.2620 2 1922 2 chr7D.!!$R5 1920
11 TraesCS7A01G492600 chr7B 664936515 664937402 887 False 1086.000000 1086 88.7800 763 1668 1 chr7B.!!$F2 905
12 TraesCS7A01G492600 chr7B 664968651 664969516 865 True 968.000000 968 86.9520 929 1807 1 chr7B.!!$R1 878
13 TraesCS7A01G492600 chr7B 664796343 664798242 1899 False 695.500000 1206 83.2840 2 1883 2 chr7B.!!$F4 1881
14 TraesCS7A01G492600 chr7B 664353243 664354083 840 False 284.000000 436 88.8425 2 848 2 chr7B.!!$F3 846
15 TraesCS7A01G492600 chr7B 665283886 665285527 1641 True 220.750000 385 90.8305 238 1670 2 chr7B.!!$R3 1432
16 TraesCS7A01G492600 chr5D 77747115 77747894 779 False 676.000000 676 82.4910 2634 3438 1 chr5D.!!$F1 804
17 TraesCS7A01G492600 chr2D 159863078 159863757 679 True 641.000000 641 83.8660 2640 3319 1 chr2D.!!$R1 679
18 TraesCS7A01G492600 chr2B 37356469 37357062 593 True 625.000000 625 85.8820 2709 3294 1 chr2B.!!$R1 585
19 TraesCS7A01G492600 chr5B 87302510 87303156 646 False 623.000000 623 84.2750 2794 3439 1 chr5B.!!$F1 645
20 TraesCS7A01G492600 chr5B 498811526 498812158 632 False 604.000000 604 84.1610 2633 3265 1 chr5B.!!$F2 632
21 TraesCS7A01G492600 chr4B 667224194 667224940 746 False 544.000000 544 80.0260 2635 3388 1 chr4B.!!$F1 753

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
825 1898 0.170561 TCTGTTCCTCGCTACGCTTC 59.829 55.0 0.0 0.0 0.00 3.86 F
1918 3192 0.587985 GCGTCAAACACACACGGAAC 60.588 55.0 0.0 0.0 34.04 3.62 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2374 3648 0.09820 CGCATCGACAGTAGAACGGA 59.902 55.0 0.0 0.0 0.00 4.69 R
3258 4562 0.03759 CCGGATGGGTGTCCTTCAAA 59.962 55.0 0.0 0.0 38.54 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
99 100 2.671596 ACAAAACAATACACATGGCGC 58.328 42.857 0.00 0.00 0.00 6.53
165 175 2.074576 GATCATCCATGCATCGTCCTG 58.925 52.381 0.00 0.00 0.00 3.86
234 257 5.926663 TCGGAGACTAGCTAGATTAACAGA 58.073 41.667 27.45 14.68 0.00 3.41
235 258 6.535540 TCGGAGACTAGCTAGATTAACAGAT 58.464 40.000 27.45 0.70 0.00 2.90
236 259 6.651643 TCGGAGACTAGCTAGATTAACAGATC 59.348 42.308 27.45 10.56 0.00 2.75
460 640 2.381961 AGAGAAATTAACCCTGGGGCAA 59.618 45.455 18.88 10.68 39.32 4.52
656 1728 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
657 1729 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
658 1730 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
659 1731 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
662 1734 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
663 1735 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
664 1736 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
665 1737 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
666 1738 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
667 1739 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
668 1740 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
669 1741 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
670 1742 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
671 1743 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
825 1898 0.170561 TCTGTTCCTCGCTACGCTTC 59.829 55.000 0.00 0.00 0.00 3.86
888 1992 4.457496 CACGACGCCTGCCTCCAT 62.457 66.667 0.00 0.00 0.00 3.41
942 2081 0.663568 GCAAGCAAGCAAGCAGAGTG 60.664 55.000 3.19 0.00 36.85 3.51
959 2118 0.593128 GTGACATCACACAACTGGCC 59.407 55.000 7.15 0.00 45.75 5.36
1116 2302 4.713735 TGAATTGGCGGCGCTCCA 62.714 61.111 32.30 19.48 0.00 3.86
1536 2768 2.569134 GACGAGGAAGCGTGCTCT 59.431 61.111 18.05 6.26 45.72 4.09
1676 2911 1.682684 CTAGGCACGTGAGAGGGGT 60.683 63.158 22.23 0.00 0.00 4.95
1713 2950 4.142359 ACATCCTCTGTCTCGTTCATGTAC 60.142 45.833 0.00 0.00 29.94 2.90
1719 2956 4.519350 TCTGTCTCGTTCATGTACTTCAGT 59.481 41.667 0.77 0.00 0.00 3.41
1852 3121 1.626654 CGGACGAGTGCGCAGAAAAT 61.627 55.000 12.22 0.00 42.48 1.82
1914 3188 1.421877 TGTGCGTCAAACACACACG 59.578 52.632 0.00 0.00 42.88 4.49
1915 3189 1.297304 GTGCGTCAAACACACACGG 60.297 57.895 0.00 0.00 37.96 4.94
1916 3190 1.448013 TGCGTCAAACACACACGGA 60.448 52.632 0.00 0.00 34.04 4.69
1917 3191 1.019805 TGCGTCAAACACACACGGAA 61.020 50.000 0.00 0.00 34.04 4.30
1918 3192 0.587985 GCGTCAAACACACACGGAAC 60.588 55.000 0.00 0.00 34.04 3.62
1919 3193 1.003851 CGTCAAACACACACGGAACT 58.996 50.000 0.00 0.00 0.00 3.01
1920 3194 2.195096 CGTCAAACACACACGGAACTA 58.805 47.619 0.00 0.00 0.00 2.24
1921 3195 2.034339 CGTCAAACACACACGGAACTAC 60.034 50.000 0.00 0.00 0.00 2.73
1922 3196 3.192466 GTCAAACACACACGGAACTACT 58.808 45.455 0.00 0.00 0.00 2.57
1923 3197 4.362279 GTCAAACACACACGGAACTACTA 58.638 43.478 0.00 0.00 0.00 1.82
1924 3198 4.207841 GTCAAACACACACGGAACTACTAC 59.792 45.833 0.00 0.00 0.00 2.73
1925 3199 4.098349 TCAAACACACACGGAACTACTACT 59.902 41.667 0.00 0.00 0.00 2.57
1926 3200 5.299028 TCAAACACACACGGAACTACTACTA 59.701 40.000 0.00 0.00 0.00 1.82
1927 3201 4.756084 ACACACACGGAACTACTACTAC 57.244 45.455 0.00 0.00 0.00 2.73
1928 3202 4.392940 ACACACACGGAACTACTACTACT 58.607 43.478 0.00 0.00 0.00 2.57
1929 3203 4.453819 ACACACACGGAACTACTACTACTC 59.546 45.833 0.00 0.00 0.00 2.59
1930 3204 4.694509 CACACACGGAACTACTACTACTCT 59.305 45.833 0.00 0.00 0.00 3.24
1931 3205 5.871524 CACACACGGAACTACTACTACTCTA 59.128 44.000 0.00 0.00 0.00 2.43
1932 3206 5.872070 ACACACGGAACTACTACTACTCTAC 59.128 44.000 0.00 0.00 0.00 2.59
1933 3207 6.105333 CACACGGAACTACTACTACTCTACT 58.895 44.000 0.00 0.00 0.00 2.57
1934 3208 7.093727 ACACACGGAACTACTACTACTCTACTA 60.094 40.741 0.00 0.00 0.00 1.82
1935 3209 7.434897 CACACGGAACTACTACTACTCTACTAG 59.565 44.444 0.00 0.00 0.00 2.57
1936 3210 6.420604 CACGGAACTACTACTACTCTACTAGC 59.579 46.154 0.00 0.00 0.00 3.42
1937 3211 6.097554 ACGGAACTACTACTACTCTACTAGCA 59.902 42.308 0.00 0.00 0.00 3.49
1938 3212 6.420604 CGGAACTACTACTACTCTACTAGCAC 59.579 46.154 0.00 0.00 0.00 4.40
1939 3213 7.500141 GGAACTACTACTACTCTACTAGCACT 58.500 42.308 0.00 0.00 0.00 4.40
1940 3214 7.653311 GGAACTACTACTACTCTACTAGCACTC 59.347 44.444 0.00 0.00 0.00 3.51
1941 3215 7.658525 ACTACTACTACTCTACTAGCACTCA 57.341 40.000 0.00 0.00 0.00 3.41
1942 3216 8.076910 ACTACTACTACTCTACTAGCACTCAA 57.923 38.462 0.00 0.00 0.00 3.02
1943 3217 8.199449 ACTACTACTACTCTACTAGCACTCAAG 58.801 40.741 0.00 0.00 0.00 3.02
1944 3218 6.949715 ACTACTACTCTACTAGCACTCAAGT 58.050 40.000 0.00 0.00 0.00 3.16
1945 3219 7.396418 ACTACTACTCTACTAGCACTCAAGTT 58.604 38.462 0.00 0.00 0.00 2.66
2384 3658 2.719426 CGGTCAAAGTCCGTTCTACT 57.281 50.000 0.00 0.00 42.62 2.57
2385 3659 2.325761 CGGTCAAAGTCCGTTCTACTG 58.674 52.381 0.00 0.00 42.62 2.74
2386 3660 2.288030 CGGTCAAAGTCCGTTCTACTGT 60.288 50.000 0.00 0.00 42.62 3.55
2387 3661 3.315418 GGTCAAAGTCCGTTCTACTGTC 58.685 50.000 0.00 0.00 0.00 3.51
2388 3662 2.978489 GTCAAAGTCCGTTCTACTGTCG 59.022 50.000 0.00 0.00 0.00 4.35
2389 3663 2.880268 TCAAAGTCCGTTCTACTGTCGA 59.120 45.455 0.00 0.00 0.00 4.20
2390 3664 3.504906 TCAAAGTCCGTTCTACTGTCGAT 59.495 43.478 0.00 0.00 0.00 3.59
2391 3665 3.489180 AAGTCCGTTCTACTGTCGATG 57.511 47.619 0.00 0.00 0.00 3.84
2392 3666 1.132643 AGTCCGTTCTACTGTCGATGC 59.867 52.381 0.00 0.00 0.00 3.91
2393 3667 0.098200 TCCGTTCTACTGTCGATGCG 59.902 55.000 0.00 0.00 0.00 4.73
2394 3668 1.472276 CCGTTCTACTGTCGATGCGC 61.472 60.000 0.00 0.00 0.00 6.09
2395 3669 0.523546 CGTTCTACTGTCGATGCGCT 60.524 55.000 9.73 0.00 0.00 5.92
2396 3670 1.267882 CGTTCTACTGTCGATGCGCTA 60.268 52.381 9.73 0.00 0.00 4.26
2397 3671 2.110226 GTTCTACTGTCGATGCGCTAC 58.890 52.381 9.73 1.09 0.00 3.58
2398 3672 1.375551 TCTACTGTCGATGCGCTACA 58.624 50.000 9.73 7.11 0.00 2.74
2399 3673 1.741145 TCTACTGTCGATGCGCTACAA 59.259 47.619 9.73 0.00 0.00 2.41
2400 3674 2.112522 CTACTGTCGATGCGCTACAAG 58.887 52.381 9.73 1.23 0.00 3.16
2401 3675 0.243907 ACTGTCGATGCGCTACAAGT 59.756 50.000 9.73 1.92 0.00 3.16
2402 3676 1.336887 ACTGTCGATGCGCTACAAGTT 60.337 47.619 9.73 0.00 0.00 2.66
2403 3677 1.726791 CTGTCGATGCGCTACAAGTTT 59.273 47.619 9.73 0.00 0.00 2.66
2404 3678 1.459209 TGTCGATGCGCTACAAGTTTG 59.541 47.619 9.73 0.00 0.00 2.93
2405 3679 0.442310 TCGATGCGCTACAAGTTTGC 59.558 50.000 9.73 0.00 0.00 3.68
2406 3680 0.521242 CGATGCGCTACAAGTTTGCC 60.521 55.000 9.73 0.00 0.00 4.52
2407 3681 0.804989 GATGCGCTACAAGTTTGCCT 59.195 50.000 9.73 0.00 0.00 4.75
2408 3682 1.200020 GATGCGCTACAAGTTTGCCTT 59.800 47.619 9.73 0.00 0.00 4.35
2409 3683 1.885560 TGCGCTACAAGTTTGCCTTA 58.114 45.000 9.73 0.00 0.00 2.69
2410 3684 2.432444 TGCGCTACAAGTTTGCCTTAT 58.568 42.857 9.73 0.00 0.00 1.73
2411 3685 3.601435 TGCGCTACAAGTTTGCCTTATA 58.399 40.909 9.73 0.00 0.00 0.98
2412 3686 3.621268 TGCGCTACAAGTTTGCCTTATAG 59.379 43.478 9.73 0.00 33.98 1.31
2413 3687 3.621715 GCGCTACAAGTTTGCCTTATAGT 59.378 43.478 0.00 0.00 33.49 2.12
2414 3688 4.260253 GCGCTACAAGTTTGCCTTATAGTC 60.260 45.833 0.00 0.00 33.49 2.59
2415 3689 4.270325 CGCTACAAGTTTGCCTTATAGTCC 59.730 45.833 0.00 0.00 33.49 3.85
2416 3690 5.183228 GCTACAAGTTTGCCTTATAGTCCA 58.817 41.667 0.00 0.00 33.49 4.02
2417 3691 5.823045 GCTACAAGTTTGCCTTATAGTCCAT 59.177 40.000 0.00 0.00 33.49 3.41
2418 3692 6.017852 GCTACAAGTTTGCCTTATAGTCCATC 60.018 42.308 0.00 0.00 33.49 3.51
2419 3693 5.193679 ACAAGTTTGCCTTATAGTCCATCC 58.806 41.667 0.00 0.00 0.00 3.51
2420 3694 4.073293 AGTTTGCCTTATAGTCCATCCG 57.927 45.455 0.00 0.00 0.00 4.18
2421 3695 3.454812 AGTTTGCCTTATAGTCCATCCGT 59.545 43.478 0.00 0.00 0.00 4.69
2422 3696 3.746045 TTGCCTTATAGTCCATCCGTC 57.254 47.619 0.00 0.00 0.00 4.79
2423 3697 2.958818 TGCCTTATAGTCCATCCGTCT 58.041 47.619 0.00 0.00 0.00 4.18
2424 3698 2.891580 TGCCTTATAGTCCATCCGTCTC 59.108 50.000 0.00 0.00 0.00 3.36
2425 3699 2.891580 GCCTTATAGTCCATCCGTCTCA 59.108 50.000 0.00 0.00 0.00 3.27
2426 3700 3.321111 GCCTTATAGTCCATCCGTCTCAA 59.679 47.826 0.00 0.00 0.00 3.02
2427 3701 4.202223 GCCTTATAGTCCATCCGTCTCAAA 60.202 45.833 0.00 0.00 0.00 2.69
2428 3702 5.684030 GCCTTATAGTCCATCCGTCTCAAAA 60.684 44.000 0.00 0.00 0.00 2.44
2429 3703 6.525629 CCTTATAGTCCATCCGTCTCAAAAT 58.474 40.000 0.00 0.00 0.00 1.82
2430 3704 7.667557 CCTTATAGTCCATCCGTCTCAAAATA 58.332 38.462 0.00 0.00 0.00 1.40
2431 3705 8.148351 CCTTATAGTCCATCCGTCTCAAAATAA 58.852 37.037 0.00 0.00 0.00 1.40
2432 3706 9.542462 CTTATAGTCCATCCGTCTCAAAATAAA 57.458 33.333 0.00 0.00 0.00 1.40
2434 3708 6.683974 AGTCCATCCGTCTCAAAATAAATG 57.316 37.500 0.00 0.00 0.00 2.32
2435 3709 6.414732 AGTCCATCCGTCTCAAAATAAATGA 58.585 36.000 0.00 0.00 0.00 2.57
2436 3710 7.056635 AGTCCATCCGTCTCAAAATAAATGAT 58.943 34.615 0.00 0.00 0.00 2.45
2437 3711 8.210946 AGTCCATCCGTCTCAAAATAAATGATA 58.789 33.333 0.00 0.00 0.00 2.15
2438 3712 8.499162 GTCCATCCGTCTCAAAATAAATGATAG 58.501 37.037 0.00 0.00 0.00 2.08
2439 3713 7.661437 TCCATCCGTCTCAAAATAAATGATAGG 59.339 37.037 0.00 0.00 0.00 2.57
2440 3714 6.861065 TCCGTCTCAAAATAAATGATAGGC 57.139 37.500 0.00 0.00 0.00 3.93
2441 3715 6.353323 TCCGTCTCAAAATAAATGATAGGCA 58.647 36.000 0.00 0.00 0.00 4.75
2442 3716 6.998074 TCCGTCTCAAAATAAATGATAGGCAT 59.002 34.615 0.00 0.00 39.43 4.40
2443 3717 8.154203 TCCGTCTCAAAATAAATGATAGGCATA 58.846 33.333 0.00 0.00 35.78 3.14
2444 3718 8.230486 CCGTCTCAAAATAAATGATAGGCATAC 58.770 37.037 0.00 0.00 35.78 2.39
2445 3719 8.773645 CGTCTCAAAATAAATGATAGGCATACA 58.226 33.333 0.00 0.00 35.78 2.29
2448 3722 9.850628 CTCAAAATAAATGATAGGCATACATGG 57.149 33.333 0.00 0.00 35.78 3.66
2461 3735 5.910637 GCATACATGGCCATTTGTATTTG 57.089 39.130 23.60 17.87 37.02 2.32
2462 3736 5.358922 GCATACATGGCCATTTGTATTTGT 58.641 37.500 23.60 16.91 37.02 2.83
2463 3737 6.511416 GCATACATGGCCATTTGTATTTGTA 58.489 36.000 23.60 18.31 37.02 2.41
2464 3738 6.642131 GCATACATGGCCATTTGTATTTGTAG 59.358 38.462 23.60 15.47 37.02 2.74
2465 3739 5.596836 ACATGGCCATTTGTATTTGTAGG 57.403 39.130 17.92 2.03 0.00 3.18
2466 3740 4.141959 ACATGGCCATTTGTATTTGTAGGC 60.142 41.667 17.92 0.00 39.86 3.93
2467 3741 3.707316 TGGCCATTTGTATTTGTAGGCT 58.293 40.909 0.00 0.00 40.40 4.58
2468 3742 4.093011 TGGCCATTTGTATTTGTAGGCTT 58.907 39.130 0.00 0.00 40.40 4.35
2469 3743 4.530161 TGGCCATTTGTATTTGTAGGCTTT 59.470 37.500 0.00 0.00 40.40 3.51
2470 3744 5.109210 GGCCATTTGTATTTGTAGGCTTTC 58.891 41.667 0.00 0.00 40.40 2.62
2471 3745 5.109210 GCCATTTGTATTTGTAGGCTTTCC 58.891 41.667 0.00 0.00 37.67 3.13
2472 3746 5.339990 CCATTTGTATTTGTAGGCTTTCCG 58.660 41.667 0.00 0.00 37.47 4.30
2473 3747 4.428615 TTTGTATTTGTAGGCTTTCCGC 57.571 40.909 0.00 0.00 37.47 5.54
2474 3748 3.343941 TGTATTTGTAGGCTTTCCGCT 57.656 42.857 0.00 0.00 39.13 5.52
2475 3749 3.681593 TGTATTTGTAGGCTTTCCGCTT 58.318 40.909 0.00 0.00 39.13 4.68
2476 3750 4.076394 TGTATTTGTAGGCTTTCCGCTTT 58.924 39.130 0.00 0.00 39.13 3.51
2477 3751 3.850122 ATTTGTAGGCTTTCCGCTTTC 57.150 42.857 0.00 0.00 39.13 2.62
2478 3752 1.530323 TTGTAGGCTTTCCGCTTTCC 58.470 50.000 0.00 0.00 39.13 3.13
2479 3753 0.690762 TGTAGGCTTTCCGCTTTCCT 59.309 50.000 0.00 0.00 39.13 3.36
2480 3754 1.903860 TGTAGGCTTTCCGCTTTCCTA 59.096 47.619 0.00 0.00 39.13 2.94
2481 3755 2.303600 TGTAGGCTTTCCGCTTTCCTAA 59.696 45.455 0.00 0.00 39.13 2.69
2482 3756 2.579410 AGGCTTTCCGCTTTCCTAAA 57.421 45.000 0.00 0.00 39.13 1.85
2483 3757 2.160205 AGGCTTTCCGCTTTCCTAAAC 58.840 47.619 0.00 0.00 39.13 2.01
2484 3758 2.160205 GGCTTTCCGCTTTCCTAAACT 58.840 47.619 0.00 0.00 39.13 2.66
2485 3759 2.095212 GGCTTTCCGCTTTCCTAAACTG 60.095 50.000 0.00 0.00 39.13 3.16
2486 3760 2.812011 GCTTTCCGCTTTCCTAAACTGA 59.188 45.455 0.00 0.00 35.14 3.41
2487 3761 3.365064 GCTTTCCGCTTTCCTAAACTGAC 60.365 47.826 0.00 0.00 35.14 3.51
2488 3762 3.478857 TTCCGCTTTCCTAAACTGACA 57.521 42.857 0.00 0.00 0.00 3.58
2489 3763 3.695830 TCCGCTTTCCTAAACTGACAT 57.304 42.857 0.00 0.00 0.00 3.06
2490 3764 4.811969 TCCGCTTTCCTAAACTGACATA 57.188 40.909 0.00 0.00 0.00 2.29
2491 3765 5.155278 TCCGCTTTCCTAAACTGACATAA 57.845 39.130 0.00 0.00 0.00 1.90
2492 3766 5.553123 TCCGCTTTCCTAAACTGACATAAA 58.447 37.500 0.00 0.00 0.00 1.40
2493 3767 5.410439 TCCGCTTTCCTAAACTGACATAAAC 59.590 40.000 0.00 0.00 0.00 2.01
2494 3768 5.180492 CCGCTTTCCTAAACTGACATAAACA 59.820 40.000 0.00 0.00 0.00 2.83
2495 3769 6.128007 CCGCTTTCCTAAACTGACATAAACAT 60.128 38.462 0.00 0.00 0.00 2.71
2496 3770 6.742718 CGCTTTCCTAAACTGACATAAACATG 59.257 38.462 0.00 0.00 0.00 3.21
2497 3771 7.029563 GCTTTCCTAAACTGACATAAACATGG 58.970 38.462 0.00 0.00 0.00 3.66
2498 3772 7.094377 GCTTTCCTAAACTGACATAAACATGGA 60.094 37.037 0.00 0.00 0.00 3.41
2499 3773 7.921786 TTCCTAAACTGACATAAACATGGAG 57.078 36.000 0.00 0.00 0.00 3.86
2500 3774 7.016153 TCCTAAACTGACATAAACATGGAGT 57.984 36.000 0.00 0.00 0.00 3.85
2501 3775 6.878923 TCCTAAACTGACATAAACATGGAGTG 59.121 38.462 0.00 0.00 0.00 3.51
2502 3776 6.655003 CCTAAACTGACATAAACATGGAGTGT 59.345 38.462 0.00 0.00 44.84 3.55
2513 3787 4.399004 ACATGGAGTGTTGCTAGATCTC 57.601 45.455 0.00 0.00 38.01 2.75
2514 3788 3.771479 ACATGGAGTGTTGCTAGATCTCA 59.229 43.478 0.00 0.00 38.01 3.27
2515 3789 4.141981 ACATGGAGTGTTGCTAGATCTCAG 60.142 45.833 0.00 0.00 38.01 3.35
2516 3790 3.435275 TGGAGTGTTGCTAGATCTCAGT 58.565 45.455 0.00 0.00 0.00 3.41
2517 3791 3.834813 TGGAGTGTTGCTAGATCTCAGTT 59.165 43.478 0.00 0.00 0.00 3.16
2518 3792 5.016831 TGGAGTGTTGCTAGATCTCAGTTA 58.983 41.667 0.00 0.00 0.00 2.24
2519 3793 5.480422 TGGAGTGTTGCTAGATCTCAGTTAA 59.520 40.000 0.00 0.00 0.00 2.01
2520 3794 5.808030 GGAGTGTTGCTAGATCTCAGTTAAC 59.192 44.000 0.00 0.00 0.00 2.01
2521 3795 6.350612 GGAGTGTTGCTAGATCTCAGTTAACT 60.351 42.308 1.12 1.12 0.00 2.24
2522 3796 6.998802 AGTGTTGCTAGATCTCAGTTAACTT 58.001 36.000 5.07 0.00 0.00 2.66
2523 3797 8.123639 AGTGTTGCTAGATCTCAGTTAACTTA 57.876 34.615 5.07 0.00 0.00 2.24
2524 3798 8.585881 AGTGTTGCTAGATCTCAGTTAACTTAA 58.414 33.333 5.07 0.00 0.00 1.85
2525 3799 8.648968 GTGTTGCTAGATCTCAGTTAACTTAAC 58.351 37.037 5.07 3.77 38.94 2.01
2526 3800 7.817962 TGTTGCTAGATCTCAGTTAACTTAACC 59.182 37.037 5.07 0.00 39.47 2.85
2527 3801 7.476540 TGCTAGATCTCAGTTAACTTAACCA 57.523 36.000 5.07 0.00 39.47 3.67
2528 3802 7.903145 TGCTAGATCTCAGTTAACTTAACCAA 58.097 34.615 5.07 0.00 39.47 3.67
2529 3803 8.035394 TGCTAGATCTCAGTTAACTTAACCAAG 58.965 37.037 5.07 6.38 39.47 3.61
2531 3805 9.575783 CTAGATCTCAGTTAACTTAACCAAGTC 57.424 37.037 5.07 0.00 44.41 3.01
2532 3806 8.196378 AGATCTCAGTTAACTTAACCAAGTCT 57.804 34.615 5.07 0.00 44.41 3.24
2533 3807 8.308207 AGATCTCAGTTAACTTAACCAAGTCTC 58.692 37.037 5.07 7.56 44.41 3.36
2534 3808 7.356089 TCTCAGTTAACTTAACCAAGTCTCA 57.644 36.000 5.07 0.00 44.41 3.27
2535 3809 7.434492 TCTCAGTTAACTTAACCAAGTCTCAG 58.566 38.462 5.07 0.00 44.41 3.35
2536 3810 7.069578 TCTCAGTTAACTTAACCAAGTCTCAGT 59.930 37.037 5.07 0.00 44.41 3.41
2537 3811 7.208080 TCAGTTAACTTAACCAAGTCTCAGTC 58.792 38.462 5.07 0.00 44.41 3.51
2538 3812 6.984474 CAGTTAACTTAACCAAGTCTCAGTCA 59.016 38.462 5.07 0.00 44.41 3.41
2539 3813 7.494625 CAGTTAACTTAACCAAGTCTCAGTCAA 59.505 37.037 5.07 0.00 44.41 3.18
2540 3814 8.211629 AGTTAACTTAACCAAGTCTCAGTCAAT 58.788 33.333 1.12 0.00 44.41 2.57
2541 3815 8.837389 GTTAACTTAACCAAGTCTCAGTCAATT 58.163 33.333 0.00 0.00 44.41 2.32
2542 3816 6.867662 ACTTAACCAAGTCTCAGTCAATTG 57.132 37.500 0.00 0.00 41.25 2.32
2543 3817 6.591935 ACTTAACCAAGTCTCAGTCAATTGA 58.408 36.000 3.38 3.38 41.25 2.57
2544 3818 6.483640 ACTTAACCAAGTCTCAGTCAATTGAC 59.516 38.462 27.69 27.69 41.25 3.18
2545 3819 7.851114 ACTTAACCAAGTCTCAGTCAATTGACA 60.851 37.037 33.92 17.69 43.13 3.58
2560 3834 8.406172 GTCAATTGACACAACATGTAAAAAGT 57.594 30.769 29.43 0.00 43.56 2.66
2561 3835 9.509855 GTCAATTGACACAACATGTAAAAAGTA 57.490 29.630 29.43 0.00 43.56 2.24
2592 3866 8.786826 AAAATTGTACGGATCTCAACATAAGA 57.213 30.769 0.00 0.00 0.00 2.10
2593 3867 8.964476 AAATTGTACGGATCTCAACATAAGAT 57.036 30.769 0.00 0.00 36.19 2.40
2594 3868 8.594881 AATTGTACGGATCTCAACATAAGATC 57.405 34.615 4.85 4.85 45.54 2.75
2595 3869 6.961360 TGTACGGATCTCAACATAAGATCT 57.039 37.500 11.66 0.00 45.56 2.75
2596 3870 6.971602 TGTACGGATCTCAACATAAGATCTC 58.028 40.000 11.66 3.46 45.56 2.75
2597 3871 6.546034 TGTACGGATCTCAACATAAGATCTCA 59.454 38.462 11.66 0.00 45.56 3.27
2598 3872 5.837437 ACGGATCTCAACATAAGATCTCAC 58.163 41.667 11.66 0.00 45.56 3.51
2599 3873 4.914504 CGGATCTCAACATAAGATCTCACG 59.085 45.833 11.66 5.01 45.56 4.35
2600 3874 5.278022 CGGATCTCAACATAAGATCTCACGA 60.278 44.000 11.66 0.00 45.56 4.35
2601 3875 6.569418 CGGATCTCAACATAAGATCTCACGAT 60.569 42.308 11.66 0.00 45.56 3.73
2602 3876 7.361286 CGGATCTCAACATAAGATCTCACGATA 60.361 40.741 11.66 0.00 45.56 2.92
2603 3877 8.465999 GGATCTCAACATAAGATCTCACGATAT 58.534 37.037 11.66 0.00 45.56 1.63
2606 3880 8.454894 TCTCAACATAAGATCTCACGATATAGC 58.545 37.037 0.00 0.00 0.00 2.97
2607 3881 8.110860 TCAACATAAGATCTCACGATATAGCA 57.889 34.615 0.00 0.00 0.00 3.49
2608 3882 8.743714 TCAACATAAGATCTCACGATATAGCAT 58.256 33.333 0.00 0.00 0.00 3.79
2609 3883 9.018716 CAACATAAGATCTCACGATATAGCATC 57.981 37.037 0.00 0.00 0.00 3.91
2610 3884 7.413644 ACATAAGATCTCACGATATAGCATCG 58.586 38.462 0.00 5.17 46.02 3.84
2611 3885 7.281100 ACATAAGATCTCACGATATAGCATCGA 59.719 37.037 13.11 0.00 43.59 3.59
2612 3886 5.478233 AGATCTCACGATATAGCATCGAC 57.522 43.478 13.11 0.00 43.59 4.20
2613 3887 5.182487 AGATCTCACGATATAGCATCGACT 58.818 41.667 13.11 0.00 43.59 4.18
2614 3888 6.342111 AGATCTCACGATATAGCATCGACTA 58.658 40.000 13.11 0.00 43.59 2.59
2615 3889 6.819146 AGATCTCACGATATAGCATCGACTAA 59.181 38.462 13.11 0.00 43.59 2.24
2616 3890 6.410243 TCTCACGATATAGCATCGACTAAG 57.590 41.667 13.11 5.27 43.59 2.18
2617 3891 6.164176 TCTCACGATATAGCATCGACTAAGA 58.836 40.000 13.11 7.12 43.59 2.10
2618 3892 6.091034 TCTCACGATATAGCATCGACTAAGAC 59.909 42.308 13.11 0.00 43.59 3.01
2619 3893 5.932883 TCACGATATAGCATCGACTAAGACT 59.067 40.000 13.11 0.00 43.59 3.24
2620 3894 6.427242 TCACGATATAGCATCGACTAAGACTT 59.573 38.462 13.11 0.00 43.59 3.01
2621 3895 6.739100 CACGATATAGCATCGACTAAGACTTC 59.261 42.308 13.11 0.00 43.59 3.01
2622 3896 5.954922 CGATATAGCATCGACTAAGACTTCG 59.045 44.000 0.42 0.00 43.59 3.79
2623 3897 6.401260 CGATATAGCATCGACTAAGACTTCGT 60.401 42.308 0.42 0.00 43.59 3.85
2624 3898 3.851976 AGCATCGACTAAGACTTCGTT 57.148 42.857 0.00 0.00 36.60 3.85
2625 3899 4.959596 AGCATCGACTAAGACTTCGTTA 57.040 40.909 0.00 0.00 36.60 3.18
2626 3900 5.306532 AGCATCGACTAAGACTTCGTTAA 57.693 39.130 0.00 0.00 36.60 2.01
2627 3901 5.706916 AGCATCGACTAAGACTTCGTTAAA 58.293 37.500 0.00 0.00 36.60 1.52
2628 3902 6.331061 AGCATCGACTAAGACTTCGTTAAAT 58.669 36.000 0.00 0.00 36.60 1.40
2629 3903 6.472808 AGCATCGACTAAGACTTCGTTAAATC 59.527 38.462 0.00 0.00 36.60 2.17
2630 3904 6.472808 GCATCGACTAAGACTTCGTTAAATCT 59.527 38.462 0.00 0.00 36.60 2.40
2631 3905 7.305533 GCATCGACTAAGACTTCGTTAAATCTC 60.306 40.741 0.00 0.00 36.60 2.75
2643 3917 7.770897 ACTTCGTTAAATCTCAGGCATTTCTAT 59.229 33.333 0.00 0.00 0.00 1.98
2691 3966 5.913137 TCCGACGAAATAAACCCTTAGTA 57.087 39.130 0.00 0.00 0.00 1.82
2695 3970 5.458126 CGACGAAATAAACCCTTAGTAGAGC 59.542 44.000 0.00 0.00 0.00 4.09
2699 3974 7.494952 ACGAAATAAACCCTTAGTAGAGCATTC 59.505 37.037 0.00 0.00 0.00 2.67
2706 3981 6.436890 ACCCTTAGTAGAGCATTCTTACTCT 58.563 40.000 0.00 0.00 45.15 3.24
2719 3998 6.128526 GCATTCTTACTCTGCTAAGTTTTCGT 60.129 38.462 0.00 0.00 33.15 3.85
2746 4025 7.283580 CGGACCTAACTGATCCCTTCTATATAG 59.716 44.444 3.10 3.10 0.00 1.31
2749 4028 6.829298 CCTAACTGATCCCTTCTATATAGCGA 59.171 42.308 4.75 0.00 0.00 4.93
2894 4184 5.994668 AGCAAAACCAAAGAAAACAAGAACA 59.005 32.000 0.00 0.00 0.00 3.18
2909 4199 8.911247 AAACAAGAACAACAATTAGACACTTC 57.089 30.769 0.00 0.00 0.00 3.01
3018 4313 1.069636 CGAGCTTGCACACTTCTTTCC 60.070 52.381 0.00 0.00 0.00 3.13
3027 4322 3.124297 GCACACTTCTTTCCTCTTCGATG 59.876 47.826 0.00 0.00 0.00 3.84
3030 4325 3.616379 CACTTCTTTCCTCTTCGATGCTC 59.384 47.826 0.00 0.00 0.00 4.26
3059 4356 1.321743 GACGTTGCTTCGCATCTAGTG 59.678 52.381 0.00 0.00 38.76 2.74
3087 4384 4.026744 TCTAGCCTCTGTTCTAGCAATGT 58.973 43.478 0.00 0.00 33.94 2.71
3192 4490 7.651304 CCTACACACAAATTTGAGCAAACAATA 59.349 33.333 24.64 3.98 32.51 1.90
3193 4491 7.467557 ACACACAAATTTGAGCAAACAATAG 57.532 32.000 24.64 3.81 32.51 1.73
3195 4493 6.700960 CACACAAATTTGAGCAAACAATAGGA 59.299 34.615 24.64 0.00 32.51 2.94
3239 4543 3.059597 AGTGACGAATCAAAAGAAGCACG 60.060 43.478 0.00 0.00 36.31 5.34
3245 4549 2.922740 TCAAAAGAAGCACGTACCCT 57.077 45.000 0.00 0.00 0.00 4.34
3296 4600 0.818040 GGATGTTCGGGTATGGTGGC 60.818 60.000 0.00 0.00 0.00 5.01
3297 4601 0.818040 GATGTTCGGGTATGGTGGCC 60.818 60.000 0.00 0.00 0.00 5.36
3299 4603 1.451387 GTTCGGGTATGGTGGCCAG 60.451 63.158 5.11 0.00 36.75 4.85
3300 4604 1.613928 TTCGGGTATGGTGGCCAGA 60.614 57.895 5.11 0.00 36.75 3.86
3301 4605 1.202099 TTCGGGTATGGTGGCCAGAA 61.202 55.000 5.11 0.00 36.75 3.02
3302 4606 1.202099 TCGGGTATGGTGGCCAGAAA 61.202 55.000 5.11 0.00 36.75 2.52
3303 4607 0.748005 CGGGTATGGTGGCCAGAAAG 60.748 60.000 5.11 0.00 36.75 2.62
3345 4649 2.596452 CAGTCGTCGCACTTTATGACT 58.404 47.619 0.00 0.00 41.54 3.41
3347 4651 2.228103 AGTCGTCGCACTTTATGACTGA 59.772 45.455 0.00 0.00 39.82 3.41
3409 4713 2.903855 GATGGCCGGGCATGTCTG 60.904 66.667 44.27 0.00 0.00 3.51
3412 4716 4.722700 GGCCGGGCATGTCTGTGT 62.723 66.667 25.33 0.00 0.00 3.72
3422 4726 2.028484 GTCTGTGTCGGCGAACCA 59.972 61.111 12.92 10.52 34.57 3.67
3423 4727 1.374252 GTCTGTGTCGGCGAACCAT 60.374 57.895 12.92 0.00 34.57 3.55
3439 4743 3.816398 ACCATCGATAGGAGAGATCCA 57.184 47.619 17.37 0.00 0.00 3.41
3440 4744 4.119556 ACCATCGATAGGAGAGATCCAA 57.880 45.455 17.37 0.00 0.00 3.53
3441 4745 4.085733 ACCATCGATAGGAGAGATCCAAG 58.914 47.826 17.37 0.00 0.00 3.61
3442 4746 4.085733 CCATCGATAGGAGAGATCCAAGT 58.914 47.826 0.00 0.00 0.00 3.16
3443 4747 5.222151 ACCATCGATAGGAGAGATCCAAGTA 60.222 44.000 17.37 0.00 0.00 2.24
3444 4748 5.356751 CCATCGATAGGAGAGATCCAAGTAG 59.643 48.000 0.00 0.00 0.00 2.57
3445 4749 4.328536 TCGATAGGAGAGATCCAAGTAGC 58.671 47.826 0.00 0.00 0.00 3.58
3446 4750 4.042311 TCGATAGGAGAGATCCAAGTAGCT 59.958 45.833 0.00 0.00 0.00 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
99 100 6.110707 AGGACGTACAAGTATGGTTAATTGG 58.889 40.000 0.00 0.00 37.64 3.16
165 175 4.453751 AGAGTAGCACTAGTACTAGCACC 58.546 47.826 26.54 15.87 36.66 5.01
234 257 1.202734 ACAGCAGCACAGTGAAGTGAT 60.203 47.619 4.15 0.00 42.05 3.06
235 258 0.178767 ACAGCAGCACAGTGAAGTGA 59.821 50.000 4.15 0.00 42.05 3.41
236 259 1.869774 TACAGCAGCACAGTGAAGTG 58.130 50.000 4.15 0.00 42.37 3.16
460 640 1.472026 GCCGGAGCATGCATTTTTCAT 60.472 47.619 21.98 0.00 39.53 2.57
825 1898 6.768381 CCTGGCTAAATAAGTAAAGGAGAAGG 59.232 42.308 0.00 0.00 0.00 3.46
887 1991 7.604545 GTCTTTTGTAGTAGCTTGAGAAAGGAT 59.395 37.037 0.00 0.00 0.00 3.24
888 1992 6.929606 GTCTTTTGTAGTAGCTTGAGAAAGGA 59.070 38.462 0.00 0.00 0.00 3.36
942 2081 0.877071 CAGGCCAGTTGTGTGATGTC 59.123 55.000 5.01 0.00 0.00 3.06
952 2111 2.674220 GGAGCTAGCCAGGCCAGTT 61.674 63.158 12.13 0.45 0.00 3.16
959 2118 2.366167 AGGTGGGGAGCTAGCCAG 60.366 66.667 12.13 0.00 0.00 4.85
1657 2892 2.496817 CCCTCTCACGTGCCTAGC 59.503 66.667 11.67 0.00 0.00 3.42
1676 2911 0.724549 GGATGTGTGTGCGCGAATTA 59.275 50.000 12.10 0.00 0.00 1.40
1713 2950 6.197282 CAGCATATACACGTGAAGTACTGAAG 59.803 42.308 25.01 2.41 0.00 3.02
1719 2956 4.359706 CAGCAGCATATACACGTGAAGTA 58.640 43.478 25.01 11.80 0.00 2.24
1800 3055 1.160329 GCTCGTGTGTGGACTTGCTT 61.160 55.000 0.00 0.00 0.00 3.91
1841 3102 5.180304 TCAACTACAACATATTTTCTGCGCA 59.820 36.000 10.98 10.98 0.00 6.09
1912 3186 6.097554 TGCTAGTAGAGTAGTAGTAGTTCCGT 59.902 42.308 0.00 0.00 34.80 4.69
1913 3187 6.420604 GTGCTAGTAGAGTAGTAGTAGTTCCG 59.579 46.154 0.00 0.00 34.80 4.30
1914 3188 7.500141 AGTGCTAGTAGAGTAGTAGTAGTTCC 58.500 42.308 0.00 0.00 34.80 3.62
1915 3189 8.196771 TGAGTGCTAGTAGAGTAGTAGTAGTTC 58.803 40.741 0.00 0.00 32.39 3.01
1916 3190 8.076910 TGAGTGCTAGTAGAGTAGTAGTAGTT 57.923 38.462 0.00 0.00 32.39 2.24
1917 3191 7.658525 TGAGTGCTAGTAGAGTAGTAGTAGT 57.341 40.000 0.00 0.00 34.14 2.73
1918 3192 8.199449 ACTTGAGTGCTAGTAGAGTAGTAGTAG 58.801 40.741 0.00 0.00 34.80 2.57
1919 3193 8.076910 ACTTGAGTGCTAGTAGAGTAGTAGTA 57.923 38.462 0.00 0.00 34.80 1.82
1920 3194 6.949715 ACTTGAGTGCTAGTAGAGTAGTAGT 58.050 40.000 0.00 0.00 34.80 2.73
1921 3195 7.852971 AACTTGAGTGCTAGTAGAGTAGTAG 57.147 40.000 0.00 0.00 35.31 2.57
2366 3640 3.315418 GACAGTAGAACGGACTTTGACC 58.685 50.000 0.00 0.00 0.00 4.02
2367 3641 2.978489 CGACAGTAGAACGGACTTTGAC 59.022 50.000 0.00 0.00 0.00 3.18
2368 3642 2.880268 TCGACAGTAGAACGGACTTTGA 59.120 45.455 0.00 0.00 0.00 2.69
2369 3643 3.278367 TCGACAGTAGAACGGACTTTG 57.722 47.619 0.00 0.00 0.00 2.77
2370 3644 3.834610 CATCGACAGTAGAACGGACTTT 58.165 45.455 0.00 0.00 0.00 2.66
2371 3645 2.415625 GCATCGACAGTAGAACGGACTT 60.416 50.000 0.00 0.00 0.00 3.01
2372 3646 1.132643 GCATCGACAGTAGAACGGACT 59.867 52.381 0.00 0.00 0.00 3.85
2373 3647 1.546834 GCATCGACAGTAGAACGGAC 58.453 55.000 0.00 0.00 0.00 4.79
2374 3648 0.098200 CGCATCGACAGTAGAACGGA 59.902 55.000 0.00 0.00 0.00 4.69
2375 3649 1.472276 GCGCATCGACAGTAGAACGG 61.472 60.000 0.30 0.00 0.00 4.44
2376 3650 0.523546 AGCGCATCGACAGTAGAACG 60.524 55.000 11.47 5.44 0.00 3.95
2377 3651 2.110226 GTAGCGCATCGACAGTAGAAC 58.890 52.381 11.47 0.00 0.00 3.01
2378 3652 1.741145 TGTAGCGCATCGACAGTAGAA 59.259 47.619 11.47 0.00 0.00 2.10
2379 3653 1.375551 TGTAGCGCATCGACAGTAGA 58.624 50.000 11.47 0.00 0.00 2.59
2380 3654 2.112522 CTTGTAGCGCATCGACAGTAG 58.887 52.381 11.47 0.00 31.98 2.57
2381 3655 1.471287 ACTTGTAGCGCATCGACAGTA 59.529 47.619 11.47 0.00 31.98 2.74
2382 3656 0.243907 ACTTGTAGCGCATCGACAGT 59.756 50.000 11.47 0.07 31.98 3.55
2383 3657 1.350193 AACTTGTAGCGCATCGACAG 58.650 50.000 11.47 0.00 31.98 3.51
2384 3658 1.459209 CAAACTTGTAGCGCATCGACA 59.541 47.619 11.47 5.15 0.00 4.35
2385 3659 1.786928 GCAAACTTGTAGCGCATCGAC 60.787 52.381 11.47 2.09 0.00 4.20
2386 3660 0.442310 GCAAACTTGTAGCGCATCGA 59.558 50.000 11.47 0.31 0.00 3.59
2387 3661 0.521242 GGCAAACTTGTAGCGCATCG 60.521 55.000 11.47 0.00 0.00 3.84
2388 3662 0.804989 AGGCAAACTTGTAGCGCATC 59.195 50.000 11.47 1.90 0.00 3.91
2389 3663 1.247567 AAGGCAAACTTGTAGCGCAT 58.752 45.000 11.47 0.00 38.21 4.73
2390 3664 1.885560 TAAGGCAAACTTGTAGCGCA 58.114 45.000 11.47 0.00 40.37 6.09
2391 3665 4.197107 CTATAAGGCAAACTTGTAGCGC 57.803 45.455 0.00 0.00 41.81 5.92
2395 3669 6.354130 GGATGGACTATAAGGCAAACTTGTA 58.646 40.000 0.00 0.00 40.37 2.41
2396 3670 5.193679 GGATGGACTATAAGGCAAACTTGT 58.806 41.667 0.00 0.00 40.37 3.16
2397 3671 4.273480 CGGATGGACTATAAGGCAAACTTG 59.727 45.833 0.00 0.00 40.37 3.16
2398 3672 4.080526 ACGGATGGACTATAAGGCAAACTT 60.081 41.667 0.00 0.00 43.28 2.66
2399 3673 3.454812 ACGGATGGACTATAAGGCAAACT 59.545 43.478 0.00 0.00 0.00 2.66
2400 3674 3.805207 ACGGATGGACTATAAGGCAAAC 58.195 45.455 0.00 0.00 0.00 2.93
2401 3675 3.709653 AGACGGATGGACTATAAGGCAAA 59.290 43.478 0.00 0.00 0.00 3.68
2402 3676 3.305720 AGACGGATGGACTATAAGGCAA 58.694 45.455 0.00 0.00 0.00 4.52
2403 3677 2.891580 GAGACGGATGGACTATAAGGCA 59.108 50.000 0.00 0.00 0.00 4.75
2404 3678 2.891580 TGAGACGGATGGACTATAAGGC 59.108 50.000 0.00 0.00 0.00 4.35
2405 3679 5.531122 TTTGAGACGGATGGACTATAAGG 57.469 43.478 0.00 0.00 0.00 2.69
2406 3680 9.542462 TTTATTTTGAGACGGATGGACTATAAG 57.458 33.333 0.00 0.00 0.00 1.73
2408 3682 9.489084 CATTTATTTTGAGACGGATGGACTATA 57.511 33.333 0.00 0.00 0.00 1.31
2409 3683 8.210946 TCATTTATTTTGAGACGGATGGACTAT 58.789 33.333 0.00 0.00 0.00 2.12
2410 3684 7.561251 TCATTTATTTTGAGACGGATGGACTA 58.439 34.615 0.00 0.00 0.00 2.59
2411 3685 6.414732 TCATTTATTTTGAGACGGATGGACT 58.585 36.000 0.00 0.00 0.00 3.85
2412 3686 6.677781 TCATTTATTTTGAGACGGATGGAC 57.322 37.500 0.00 0.00 0.00 4.02
2413 3687 7.661437 CCTATCATTTATTTTGAGACGGATGGA 59.339 37.037 0.00 0.00 0.00 3.41
2414 3688 7.573843 GCCTATCATTTATTTTGAGACGGATGG 60.574 40.741 0.00 0.00 0.00 3.51
2415 3689 7.041167 TGCCTATCATTTATTTTGAGACGGATG 60.041 37.037 0.00 0.00 0.00 3.51
2416 3690 6.998074 TGCCTATCATTTATTTTGAGACGGAT 59.002 34.615 0.00 0.00 0.00 4.18
2417 3691 6.353323 TGCCTATCATTTATTTTGAGACGGA 58.647 36.000 0.00 0.00 0.00 4.69
2418 3692 6.618287 TGCCTATCATTTATTTTGAGACGG 57.382 37.500 0.00 0.00 0.00 4.79
2419 3693 8.773645 TGTATGCCTATCATTTATTTTGAGACG 58.226 33.333 0.00 0.00 36.63 4.18
2422 3696 9.850628 CCATGTATGCCTATCATTTATTTTGAG 57.149 33.333 0.00 0.00 36.63 3.02
2423 3697 8.306038 GCCATGTATGCCTATCATTTATTTTGA 58.694 33.333 0.00 0.00 36.63 2.69
2424 3698 7.546667 GGCCATGTATGCCTATCATTTATTTTG 59.453 37.037 0.00 0.00 45.70 2.44
2425 3699 7.614494 GGCCATGTATGCCTATCATTTATTTT 58.386 34.615 0.00 0.00 45.70 1.82
2426 3700 7.174107 GGCCATGTATGCCTATCATTTATTT 57.826 36.000 0.00 0.00 45.70 1.40
2427 3701 6.780457 GGCCATGTATGCCTATCATTTATT 57.220 37.500 0.00 0.00 45.70 1.40
2439 3713 5.358922 ACAAATACAAATGGCCATGTATGC 58.641 37.500 25.66 0.00 40.81 3.14
2440 3714 7.147312 CCTACAAATACAAATGGCCATGTATG 58.853 38.462 25.66 22.56 40.81 2.39
2441 3715 6.239289 GCCTACAAATACAAATGGCCATGTAT 60.239 38.462 21.63 21.48 42.88 2.29
2442 3716 5.068460 GCCTACAAATACAAATGGCCATGTA 59.932 40.000 21.63 20.10 36.54 2.29
2443 3717 4.141959 GCCTACAAATACAAATGGCCATGT 60.142 41.667 21.63 18.39 33.45 3.21
2444 3718 4.099881 AGCCTACAAATACAAATGGCCATG 59.900 41.667 21.63 12.51 39.68 3.66
2445 3719 4.289245 AGCCTACAAATACAAATGGCCAT 58.711 39.130 14.09 14.09 39.68 4.40
2446 3720 3.707316 AGCCTACAAATACAAATGGCCA 58.293 40.909 8.56 8.56 39.68 5.36
2447 3721 4.736126 AAGCCTACAAATACAAATGGCC 57.264 40.909 0.00 0.00 39.68 5.36
2448 3722 5.109210 GGAAAGCCTACAAATACAAATGGC 58.891 41.667 0.00 0.00 39.19 4.40
2449 3723 5.339990 CGGAAAGCCTACAAATACAAATGG 58.660 41.667 0.00 0.00 0.00 3.16
2450 3724 4.798387 GCGGAAAGCCTACAAATACAAATG 59.202 41.667 0.00 0.00 40.81 2.32
2451 3725 4.993905 GCGGAAAGCCTACAAATACAAAT 58.006 39.130 0.00 0.00 40.81 2.32
2452 3726 4.428615 GCGGAAAGCCTACAAATACAAA 57.571 40.909 0.00 0.00 40.81 2.83
2466 3740 3.813166 TGTCAGTTTAGGAAAGCGGAAAG 59.187 43.478 0.00 0.00 0.00 2.62
2467 3741 3.811083 TGTCAGTTTAGGAAAGCGGAAA 58.189 40.909 0.00 0.00 0.00 3.13
2468 3742 3.478857 TGTCAGTTTAGGAAAGCGGAA 57.521 42.857 0.00 0.00 0.00 4.30
2469 3743 3.695830 ATGTCAGTTTAGGAAAGCGGA 57.304 42.857 0.00 0.00 0.00 5.54
2470 3744 5.180492 TGTTTATGTCAGTTTAGGAAAGCGG 59.820 40.000 0.00 0.00 0.00 5.52
2471 3745 6.236017 TGTTTATGTCAGTTTAGGAAAGCG 57.764 37.500 0.00 0.00 0.00 4.68
2472 3746 7.029563 CCATGTTTATGTCAGTTTAGGAAAGC 58.970 38.462 0.00 0.00 32.21 3.51
2473 3747 8.335532 TCCATGTTTATGTCAGTTTAGGAAAG 57.664 34.615 0.00 0.00 32.21 2.62
2474 3748 7.942341 ACTCCATGTTTATGTCAGTTTAGGAAA 59.058 33.333 0.00 0.00 32.21 3.13
2475 3749 7.390440 CACTCCATGTTTATGTCAGTTTAGGAA 59.610 37.037 0.00 0.00 32.21 3.36
2476 3750 6.878923 CACTCCATGTTTATGTCAGTTTAGGA 59.121 38.462 0.00 0.00 32.21 2.94
2477 3751 6.655003 ACACTCCATGTTTATGTCAGTTTAGG 59.345 38.462 0.00 0.00 38.98 2.69
2478 3752 7.672983 ACACTCCATGTTTATGTCAGTTTAG 57.327 36.000 0.00 0.00 38.98 1.85
2492 3766 3.771479 TGAGATCTAGCAACACTCCATGT 59.229 43.478 0.00 0.00 46.42 3.21
2493 3767 4.141981 ACTGAGATCTAGCAACACTCCATG 60.142 45.833 0.00 0.00 0.00 3.66
2494 3768 4.029520 ACTGAGATCTAGCAACACTCCAT 58.970 43.478 0.00 0.00 0.00 3.41
2495 3769 3.435275 ACTGAGATCTAGCAACACTCCA 58.565 45.455 0.00 0.00 0.00 3.86
2496 3770 4.464069 AACTGAGATCTAGCAACACTCC 57.536 45.455 0.00 0.00 0.00 3.85
2497 3771 6.626302 AGTTAACTGAGATCTAGCAACACTC 58.374 40.000 7.48 0.00 0.00 3.51
2498 3772 6.597832 AGTTAACTGAGATCTAGCAACACT 57.402 37.500 7.48 0.00 0.00 3.55
2499 3773 8.648968 GTTAAGTTAACTGAGATCTAGCAACAC 58.351 37.037 16.90 0.00 35.81 3.32
2500 3774 7.817962 GGTTAAGTTAACTGAGATCTAGCAACA 59.182 37.037 21.91 0.00 38.68 3.33
2501 3775 7.817962 TGGTTAAGTTAACTGAGATCTAGCAAC 59.182 37.037 21.91 4.41 38.68 4.17
2502 3776 7.903145 TGGTTAAGTTAACTGAGATCTAGCAA 58.097 34.615 21.91 0.00 38.68 3.91
2503 3777 7.476540 TGGTTAAGTTAACTGAGATCTAGCA 57.523 36.000 21.91 0.00 38.68 3.49
2504 3778 8.035984 ACTTGGTTAAGTTAACTGAGATCTAGC 58.964 37.037 21.91 0.00 44.57 3.42
2505 3779 9.575783 GACTTGGTTAAGTTAACTGAGATCTAG 57.424 37.037 21.91 13.55 46.79 2.43
2506 3780 9.310449 AGACTTGGTTAAGTTAACTGAGATCTA 57.690 33.333 21.91 0.00 46.79 1.98
2507 3781 8.196378 AGACTTGGTTAAGTTAACTGAGATCT 57.804 34.615 21.91 18.48 46.79 2.75
2508 3782 8.088981 TGAGACTTGGTTAAGTTAACTGAGATC 58.911 37.037 21.91 19.46 46.79 2.75
2509 3783 7.963532 TGAGACTTGGTTAAGTTAACTGAGAT 58.036 34.615 21.91 14.22 46.79 2.75
2510 3784 7.069578 ACTGAGACTTGGTTAAGTTAACTGAGA 59.930 37.037 21.91 7.81 46.79 3.27
2511 3785 7.210873 ACTGAGACTTGGTTAAGTTAACTGAG 58.789 38.462 21.91 20.12 46.79 3.35
2512 3786 7.120923 ACTGAGACTTGGTTAAGTTAACTGA 57.879 36.000 21.91 0.00 46.79 3.41
2513 3787 6.984474 TGACTGAGACTTGGTTAAGTTAACTG 59.016 38.462 21.91 15.37 46.79 3.16
2514 3788 7.120923 TGACTGAGACTTGGTTAAGTTAACT 57.879 36.000 21.91 1.12 46.79 2.24
2515 3789 7.781548 TTGACTGAGACTTGGTTAAGTTAAC 57.218 36.000 16.07 16.07 46.79 2.01
2516 3790 8.836413 CAATTGACTGAGACTTGGTTAAGTTAA 58.164 33.333 0.00 0.00 46.79 2.01
2517 3791 8.208224 TCAATTGACTGAGACTTGGTTAAGTTA 58.792 33.333 3.38 0.00 46.79 2.24
2518 3792 7.012421 GTCAATTGACTGAGACTTGGTTAAGTT 59.988 37.037 27.66 0.00 42.94 2.66
2519 3793 6.483640 GTCAATTGACTGAGACTTGGTTAAGT 59.516 38.462 27.66 0.00 44.16 2.24
2520 3794 6.483307 TGTCAATTGACTGAGACTTGGTTAAG 59.517 38.462 32.57 0.00 44.99 1.85
2521 3795 6.260050 GTGTCAATTGACTGAGACTTGGTTAA 59.740 38.462 32.57 10.14 44.99 2.01
2522 3796 5.758296 GTGTCAATTGACTGAGACTTGGTTA 59.242 40.000 32.57 10.54 44.99 2.85
2523 3797 4.576463 GTGTCAATTGACTGAGACTTGGTT 59.424 41.667 32.57 0.00 44.99 3.67
2524 3798 4.130118 GTGTCAATTGACTGAGACTTGGT 58.870 43.478 32.57 0.00 44.99 3.67
2525 3799 4.129380 TGTGTCAATTGACTGAGACTTGG 58.871 43.478 32.57 0.00 44.99 3.61
2526 3800 5.065090 TGTTGTGTCAATTGACTGAGACTTG 59.935 40.000 32.57 0.00 44.99 3.16
2527 3801 5.185454 TGTTGTGTCAATTGACTGAGACTT 58.815 37.500 32.57 0.00 44.99 3.01
2528 3802 4.769688 TGTTGTGTCAATTGACTGAGACT 58.230 39.130 32.57 0.00 44.99 3.24
2529 3803 5.008019 ACATGTTGTGTCAATTGACTGAGAC 59.992 40.000 32.57 24.02 44.99 3.36
2530 3804 5.125356 ACATGTTGTGTCAATTGACTGAGA 58.875 37.500 32.57 19.57 44.99 3.27
2531 3805 5.428496 ACATGTTGTGTCAATTGACTGAG 57.572 39.130 32.57 19.45 44.99 3.35
2532 3806 6.934048 TTACATGTTGTGTCAATTGACTGA 57.066 33.333 32.57 19.52 44.99 3.41
2533 3807 7.984002 TTTTACATGTTGTGTCAATTGACTG 57.016 32.000 32.57 24.46 44.99 3.51
2534 3808 8.250332 ACTTTTTACATGTTGTGTCAATTGACT 58.750 29.630 32.57 16.54 44.99 3.41
2535 3809 8.406172 ACTTTTTACATGTTGTGTCAATTGAC 57.594 30.769 28.10 28.10 42.29 3.18
2566 3840 9.226606 TCTTATGTTGAGATCCGTACAATTTTT 57.773 29.630 0.00 0.00 0.00 1.94
2567 3841 8.786826 TCTTATGTTGAGATCCGTACAATTTT 57.213 30.769 0.00 0.00 0.00 1.82
2568 3842 8.964476 ATCTTATGTTGAGATCCGTACAATTT 57.036 30.769 0.00 0.00 0.00 1.82
2569 3843 8.424918 AGATCTTATGTTGAGATCCGTACAATT 58.575 33.333 9.76 0.00 46.88 2.32
2570 3844 7.957002 AGATCTTATGTTGAGATCCGTACAAT 58.043 34.615 9.76 0.00 46.88 2.71
2571 3845 7.068226 TGAGATCTTATGTTGAGATCCGTACAA 59.932 37.037 9.76 0.00 46.88 2.41
2572 3846 6.546034 TGAGATCTTATGTTGAGATCCGTACA 59.454 38.462 9.76 0.00 46.88 2.90
2573 3847 6.858993 GTGAGATCTTATGTTGAGATCCGTAC 59.141 42.308 9.76 4.63 46.88 3.67
2574 3848 6.293462 CGTGAGATCTTATGTTGAGATCCGTA 60.293 42.308 9.76 0.00 46.88 4.02
2575 3849 5.506483 CGTGAGATCTTATGTTGAGATCCGT 60.506 44.000 9.76 0.00 46.88 4.69
2576 3850 4.914504 CGTGAGATCTTATGTTGAGATCCG 59.085 45.833 9.76 4.39 46.88 4.18
2577 3851 6.078202 TCGTGAGATCTTATGTTGAGATCC 57.922 41.667 6.61 4.01 46.88 3.36
2594 3868 6.091577 AGTCTTAGTCGATGCTATATCGTGAG 59.908 42.308 8.86 4.31 41.77 3.51
2595 3869 5.932883 AGTCTTAGTCGATGCTATATCGTGA 59.067 40.000 8.86 0.55 41.77 4.35
2596 3870 6.171932 AGTCTTAGTCGATGCTATATCGTG 57.828 41.667 8.86 0.00 41.77 4.35
2597 3871 6.401260 CGAAGTCTTAGTCGATGCTATATCGT 60.401 42.308 8.86 0.00 41.77 3.73
2598 3872 5.954922 CGAAGTCTTAGTCGATGCTATATCG 59.045 44.000 3.09 3.09 39.64 2.92
2599 3873 6.833839 ACGAAGTCTTAGTCGATGCTATATC 58.166 40.000 0.00 0.00 29.74 1.63
2600 3874 6.804770 ACGAAGTCTTAGTCGATGCTATAT 57.195 37.500 0.00 0.00 29.74 0.86
2601 3875 6.615264 AACGAAGTCTTAGTCGATGCTATA 57.385 37.500 0.00 0.00 45.00 1.31
2602 3876 5.502153 AACGAAGTCTTAGTCGATGCTAT 57.498 39.130 0.00 0.00 45.00 2.97
2603 3877 4.959596 AACGAAGTCTTAGTCGATGCTA 57.040 40.909 0.00 0.00 45.00 3.49
2604 3878 3.851976 AACGAAGTCTTAGTCGATGCT 57.148 42.857 0.00 0.00 45.00 3.79
2605 3879 6.472808 AGATTTAACGAAGTCTTAGTCGATGC 59.527 38.462 0.00 0.00 45.00 3.91
2606 3880 7.696872 TGAGATTTAACGAAGTCTTAGTCGATG 59.303 37.037 0.00 0.00 45.00 3.84
2607 3881 7.759465 TGAGATTTAACGAAGTCTTAGTCGAT 58.241 34.615 0.00 0.00 45.00 3.59
2608 3882 7.137490 TGAGATTTAACGAAGTCTTAGTCGA 57.863 36.000 0.00 0.00 45.00 4.20
2609 3883 6.469595 CCTGAGATTTAACGAAGTCTTAGTCG 59.530 42.308 0.00 0.00 45.00 4.18
2610 3884 6.253942 GCCTGAGATTTAACGAAGTCTTAGTC 59.746 42.308 0.00 0.00 45.00 2.59
2611 3885 6.100668 GCCTGAGATTTAACGAAGTCTTAGT 58.899 40.000 0.00 0.00 45.00 2.24
2612 3886 6.100004 TGCCTGAGATTTAACGAAGTCTTAG 58.900 40.000 0.00 0.00 45.00 2.18
2613 3887 6.032956 TGCCTGAGATTTAACGAAGTCTTA 57.967 37.500 0.00 0.00 45.00 2.10
2614 3888 4.894784 TGCCTGAGATTTAACGAAGTCTT 58.105 39.130 0.00 0.00 45.00 3.01
2615 3889 4.537135 TGCCTGAGATTTAACGAAGTCT 57.463 40.909 0.00 0.00 45.00 3.24
2616 3890 5.803020 AATGCCTGAGATTTAACGAAGTC 57.197 39.130 0.00 0.00 45.00 3.01
2618 3892 6.428385 AGAAATGCCTGAGATTTAACGAAG 57.572 37.500 0.00 0.00 0.00 3.79
2619 3893 7.226720 GGATAGAAATGCCTGAGATTTAACGAA 59.773 37.037 0.00 0.00 0.00 3.85
2620 3894 6.706270 GGATAGAAATGCCTGAGATTTAACGA 59.294 38.462 0.00 0.00 0.00 3.85
2621 3895 6.346919 CGGATAGAAATGCCTGAGATTTAACG 60.347 42.308 0.00 0.00 0.00 3.18
2622 3896 6.706270 TCGGATAGAAATGCCTGAGATTTAAC 59.294 38.462 0.00 0.00 0.00 2.01
2623 3897 6.826668 TCGGATAGAAATGCCTGAGATTTAA 58.173 36.000 0.00 0.00 0.00 1.52
2624 3898 6.419484 TCGGATAGAAATGCCTGAGATTTA 57.581 37.500 0.00 0.00 0.00 1.40
2625 3899 5.296151 TCGGATAGAAATGCCTGAGATTT 57.704 39.130 0.00 0.00 0.00 2.17
2626 3900 4.963318 TCGGATAGAAATGCCTGAGATT 57.037 40.909 0.00 0.00 0.00 2.40
2627 3901 4.081198 GGATCGGATAGAAATGCCTGAGAT 60.081 45.833 0.00 0.00 0.00 2.75
2628 3902 3.259374 GGATCGGATAGAAATGCCTGAGA 59.741 47.826 0.00 0.00 0.00 3.27
2629 3903 3.260380 AGGATCGGATAGAAATGCCTGAG 59.740 47.826 0.00 0.00 0.00 3.35
2630 3904 3.242867 AGGATCGGATAGAAATGCCTGA 58.757 45.455 0.00 0.00 0.00 3.86
2631 3905 3.260380 AGAGGATCGGATAGAAATGCCTG 59.740 47.826 0.00 0.00 42.67 4.85
2643 3917 3.893200 TCCGCTATTTTTAGAGGATCGGA 59.107 43.478 1.89 0.00 40.37 4.55
2678 3953 9.214962 AGTAAGAATGCTCTACTAAGGGTTTAT 57.785 33.333 0.00 0.00 0.00 1.40
2695 3970 7.352719 ACGAAAACTTAGCAGAGTAAGAATG 57.647 36.000 0.00 0.00 34.58 2.67
2699 3974 4.323868 CCGACGAAAACTTAGCAGAGTAAG 59.676 45.833 0.00 0.00 36.28 2.34
2706 3981 1.342174 AGGTCCGACGAAAACTTAGCA 59.658 47.619 0.00 0.00 0.00 3.49
2719 3998 2.024273 AGAAGGGATCAGTTAGGTCCGA 60.024 50.000 0.00 0.00 32.71 4.55
2766 4049 2.230992 TCAGTGGCCGAAAATGAAATGG 59.769 45.455 0.00 0.00 0.00 3.16
2974 4265 6.145858 CGAGAAGCCAATAGAGAGAATCAATG 59.854 42.308 0.00 0.00 37.82 2.82
2975 4266 6.041409 TCGAGAAGCCAATAGAGAGAATCAAT 59.959 38.462 0.00 0.00 37.82 2.57
3018 4313 4.026968 GTCGAATTCTTGAGCATCGAAGAG 60.027 45.833 3.52 0.00 43.63 2.85
3027 4322 1.461127 AGCAACGTCGAATTCTTGAGC 59.539 47.619 0.00 3.63 0.00 4.26
3030 4325 2.486128 CGAAGCAACGTCGAATTCTTG 58.514 47.619 0.00 2.50 41.02 3.02
3059 4356 4.023193 GCTAGAACAGAGGCTAGAGATGAC 60.023 50.000 0.00 0.00 36.97 3.06
3138 4436 6.147656 GGATGCAAGTTTTTGTATTGGAAAGG 59.852 38.462 0.00 0.00 39.34 3.11
3142 4440 5.798125 TGGATGCAAGTTTTTGTATTGGA 57.202 34.783 0.00 0.00 39.34 3.53
3192 4490 2.146342 CCAGCGCAATTTCGATATCCT 58.854 47.619 11.47 0.00 0.00 3.24
3193 4491 2.143122 TCCAGCGCAATTTCGATATCC 58.857 47.619 11.47 0.00 0.00 2.59
3195 4493 2.744202 GGATCCAGCGCAATTTCGATAT 59.256 45.455 11.47 0.00 0.00 1.63
3258 4562 0.037590 CCGGATGGGTGTCCTTCAAA 59.962 55.000 0.00 0.00 38.54 2.69
3285 4589 0.331616 ACTTTCTGGCCACCATACCC 59.668 55.000 0.00 0.00 30.82 3.69
3296 4600 2.520458 TGGTGGCCCACTTTCTGG 59.480 61.111 14.71 0.00 40.26 3.86
3319 4623 4.357947 GTGCGACGACTGCCTCCA 62.358 66.667 0.00 0.00 0.00 3.86
3321 4625 0.388134 TAAAGTGCGACGACTGCCTC 60.388 55.000 0.00 0.00 0.00 4.70
3391 4695 3.410628 AGACATGCCCGGCCATCA 61.411 61.111 7.03 0.00 0.00 3.07
3403 4707 1.374252 GGTTCGCCGACACAGACAT 60.374 57.895 0.00 0.00 0.00 3.06
3409 4713 0.248743 TATCGATGGTTCGCCGACAC 60.249 55.000 8.54 0.00 45.10 3.67
3412 4716 0.820482 TCCTATCGATGGTTCGCCGA 60.820 55.000 8.54 0.00 45.10 5.54
3422 4726 4.947388 GCTACTTGGATCTCTCCTATCGAT 59.053 45.833 2.16 2.16 42.59 3.59
3423 4727 4.042311 AGCTACTTGGATCTCTCCTATCGA 59.958 45.833 0.00 0.00 42.59 3.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.