Multiple sequence alignment - TraesCS7A01G492400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G492400 chr7A 100.000 5378 0 0 1 5378 681016064 681010687 0.000000e+00 9932.0
1 TraesCS7A01G492400 chr7A 89.262 149 13 3 2693 2839 148416443 148416590 3.310000e-42 183.0
2 TraesCS7A01G492400 chr7A 85.075 134 20 0 1135 1268 637052993 637052860 2.610000e-28 137.0
3 TraesCS7A01G492400 chr7A 95.238 42 2 0 2271 2312 148416113 148416154 3.480000e-07 67.6
4 TraesCS7A01G492400 chr7D 90.754 4391 200 92 492 4832 589512159 589516393 0.000000e+00 5670.0
5 TraesCS7A01G492400 chr7D 91.684 493 20 6 4897 5378 589516396 589516878 0.000000e+00 664.0
6 TraesCS7A01G492400 chr7D 89.262 149 13 3 2693 2839 146864248 146864395 3.310000e-42 183.0
7 TraesCS7A01G492400 chr7D 91.837 98 7 1 184 281 589511583 589511679 9.400000e-28 135.0
8 TraesCS7A01G492400 chr7D 88.000 75 7 2 4833 4907 604972525 604972453 2.670000e-13 87.9
9 TraesCS7A01G492400 chr7D 95.833 48 2 0 2271 2318 146863924 146863971 1.610000e-10 78.7
10 TraesCS7A01G492400 chr7B 89.448 4634 268 95 287 4815 664106230 664110747 0.000000e+00 5644.0
11 TraesCS7A01G492400 chr7B 93.084 347 10 4 4918 5253 664110767 664111110 3.740000e-136 496.0
12 TraesCS7A01G492400 chr7B 89.262 149 13 3 2693 2839 109703724 109703871 3.310000e-42 183.0
13 TraesCS7A01G492400 chr7B 90.164 122 8 1 5257 5378 664112832 664112949 7.210000e-34 156.0
14 TraesCS7A01G492400 chr7B 95.833 48 2 0 2271 2318 109703400 109703447 1.610000e-10 78.7
15 TraesCS7A01G492400 chr3A 81.339 493 67 15 1115 1605 432040458 432040927 1.410000e-100 377.0
16 TraesCS7A01G492400 chr3A 88.811 143 15 1 2699 2840 432041787 432041929 1.990000e-39 174.0
17 TraesCS7A01G492400 chr3A 88.158 76 7 2 4827 4901 621834414 621834340 7.420000e-14 89.8
18 TraesCS7A01G492400 chr6A 86.800 250 33 0 1089 1338 543394794 543395043 4.100000e-71 279.0
19 TraesCS7A01G492400 chr6A 93.496 123 8 0 2716 2838 543396172 543396294 3.310000e-42 183.0
20 TraesCS7A01G492400 chr6D 86.667 240 32 0 1099 1338 397082344 397082583 3.190000e-67 267.0
21 TraesCS7A01G492400 chr6D 93.496 123 8 0 2716 2838 397083712 397083834 3.310000e-42 183.0
22 TraesCS7A01G492400 chr3D 86.864 236 31 0 1130 1365 302850149 302849914 1.150000e-66 265.0
23 TraesCS7A01G492400 chr6B 85.830 247 35 0 1092 1338 593711926 593712172 4.130000e-66 263.0
24 TraesCS7A01G492400 chr6B 93.496 123 8 0 2716 2838 593713298 593713420 3.310000e-42 183.0
25 TraesCS7A01G492400 chr6B 88.608 79 7 2 4825 4902 188671327 188671250 1.590000e-15 95.3
26 TraesCS7A01G492400 chr3B 87.444 223 26 2 1115 1336 418660074 418660295 6.910000e-64 255.0
27 TraesCS7A01G492400 chr4D 81.270 315 47 5 1424 1729 109469879 109470190 1.500000e-60 244.0
28 TraesCS7A01G492400 chr4B 81.270 315 47 7 1424 1729 170927319 170927630 1.500000e-60 244.0
29 TraesCS7A01G492400 chr4A 81.132 318 48 6 1430 1738 466941348 466941034 1.500000e-60 244.0
30 TraesCS7A01G492400 chr5A 91.304 69 5 1 4834 4902 422040423 422040356 5.740000e-15 93.5
31 TraesCS7A01G492400 chr5D 91.176 68 4 2 4834 4900 41139969 41140035 2.060000e-14 91.6
32 TraesCS7A01G492400 chr5D 87.838 74 7 2 4827 4900 39033175 39033246 9.600000e-13 86.1
33 TraesCS7A01G492400 chr5D 85.882 85 4 7 4830 4908 549851355 549851437 3.450000e-12 84.2
34 TraesCS7A01G492400 chr2A 88.000 75 5 4 4827 4900 771521503 771521432 9.600000e-13 86.1
35 TraesCS7A01G492400 chr1A 85.542 83 6 5 4824 4903 60284304 60284383 1.240000e-11 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G492400 chr7A 681010687 681016064 5377 True 9932.000000 9932 100.000000 1 5378 1 chr7A.!!$R2 5377
1 TraesCS7A01G492400 chr7D 589511583 589516878 5295 False 2156.333333 5670 91.425000 184 5378 3 chr7D.!!$F2 5194
2 TraesCS7A01G492400 chr7B 664106230 664112949 6719 False 2098.666667 5644 90.898667 287 5378 3 chr7B.!!$F2 5091
3 TraesCS7A01G492400 chr3A 432040458 432041929 1471 False 275.500000 377 85.075000 1115 2840 2 chr3A.!!$F1 1725
4 TraesCS7A01G492400 chr6A 543394794 543396294 1500 False 231.000000 279 90.148000 1089 2838 2 chr6A.!!$F1 1749
5 TraesCS7A01G492400 chr6D 397082344 397083834 1490 False 225.000000 267 90.081500 1099 2838 2 chr6D.!!$F1 1739
6 TraesCS7A01G492400 chr6B 593711926 593713420 1494 False 223.000000 263 89.663000 1092 2838 2 chr6B.!!$F1 1746

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
846 1158 0.467844 TACGCGCCTTGTCCCCTATA 60.468 55.0 5.73 0.00 0.00 1.31 F
1025 1346 0.038159 GTCACCCCGATCGATCCATC 60.038 60.0 18.66 0.00 0.00 3.51 F
2830 3332 0.250166 TCGTCTGGTCACTCGTCTCA 60.250 55.0 0.00 0.00 0.00 3.27 F
3446 3980 0.818445 GAGAGAGGGGCACATGCATG 60.818 60.0 25.09 25.09 44.36 4.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1908 2241 0.109342 ACTGGTTGAAGCTGGACTGG 59.891 55.0 6.24 0.0 0.00 4.00 R
2904 3406 0.463116 ATGCATGCATGAGCGAGTGA 60.463 50.0 31.74 0.0 46.23 3.41 R
3815 4350 0.321564 TCAAGAACCTCACCGCCATG 60.322 55.0 0.00 0.0 0.00 3.66 R
5281 7607 0.029567 GACACTCGCCATCTACGGAG 59.970 60.0 0.00 0.0 0.00 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 8.196103 TCTATGCAGAGAATATCATCATGTAGC 58.804 37.037 8.98 0.00 0.00 3.58
27 28 6.356186 TGCAGAGAATATCATCATGTAGCT 57.644 37.500 0.00 0.00 0.00 3.32
28 29 6.766429 TGCAGAGAATATCATCATGTAGCTT 58.234 36.000 0.00 0.00 0.00 3.74
29 30 6.649557 TGCAGAGAATATCATCATGTAGCTTG 59.350 38.462 0.00 0.00 0.00 4.01
30 31 6.092396 GCAGAGAATATCATCATGTAGCTTGG 59.908 42.308 0.00 0.00 0.00 3.61
31 32 7.160049 CAGAGAATATCATCATGTAGCTTGGT 58.840 38.462 0.00 0.00 0.00 3.67
32 33 7.660617 CAGAGAATATCATCATGTAGCTTGGTT 59.339 37.037 0.00 0.00 0.00 3.67
33 34 7.877097 AGAGAATATCATCATGTAGCTTGGTTC 59.123 37.037 0.00 0.00 0.00 3.62
34 35 6.939163 AGAATATCATCATGTAGCTTGGTTCC 59.061 38.462 0.00 0.00 0.00 3.62
35 36 4.785346 ATCATCATGTAGCTTGGTTCCT 57.215 40.909 0.00 0.00 0.00 3.36
36 37 4.574674 TCATCATGTAGCTTGGTTCCTT 57.425 40.909 0.00 0.00 0.00 3.36
37 38 4.922206 TCATCATGTAGCTTGGTTCCTTT 58.078 39.130 0.00 0.00 0.00 3.11
38 39 6.061022 TCATCATGTAGCTTGGTTCCTTTA 57.939 37.500 0.00 0.00 0.00 1.85
39 40 6.662755 TCATCATGTAGCTTGGTTCCTTTAT 58.337 36.000 0.00 0.00 0.00 1.40
40 41 7.118723 TCATCATGTAGCTTGGTTCCTTTATT 58.881 34.615 0.00 0.00 0.00 1.40
41 42 7.615365 TCATCATGTAGCTTGGTTCCTTTATTT 59.385 33.333 0.00 0.00 0.00 1.40
42 43 7.775053 TCATGTAGCTTGGTTCCTTTATTTT 57.225 32.000 0.00 0.00 0.00 1.82
43 44 8.189119 TCATGTAGCTTGGTTCCTTTATTTTT 57.811 30.769 0.00 0.00 0.00 1.94
63 64 5.934935 TTTTTCGTGAAAAGGCCTAGTAG 57.065 39.130 5.16 0.00 40.83 2.57
64 65 4.612264 TTTCGTGAAAAGGCCTAGTAGT 57.388 40.909 5.16 0.00 0.00 2.73
65 66 5.726980 TTTCGTGAAAAGGCCTAGTAGTA 57.273 39.130 5.16 0.00 0.00 1.82
66 67 4.708726 TCGTGAAAAGGCCTAGTAGTAC 57.291 45.455 5.16 0.00 0.00 2.73
67 68 4.338879 TCGTGAAAAGGCCTAGTAGTACT 58.661 43.478 5.16 8.14 0.00 2.73
68 69 5.500234 TCGTGAAAAGGCCTAGTAGTACTA 58.500 41.667 5.16 9.66 0.00 1.82
69 70 6.125029 TCGTGAAAAGGCCTAGTAGTACTAT 58.875 40.000 5.16 0.00 29.08 2.12
70 71 7.282585 TCGTGAAAAGGCCTAGTAGTACTATA 58.717 38.462 5.16 0.00 29.08 1.31
71 72 7.941238 TCGTGAAAAGGCCTAGTAGTACTATAT 59.059 37.037 5.16 0.94 29.08 0.86
72 73 9.224267 CGTGAAAAGGCCTAGTAGTACTATATA 57.776 37.037 5.16 2.11 29.08 0.86
87 88 8.930846 AGTACTATATATTAAGTGTCACGGGT 57.069 34.615 0.00 0.00 0.00 5.28
88 89 9.007901 AGTACTATATATTAAGTGTCACGGGTC 57.992 37.037 0.00 0.00 0.00 4.46
89 90 7.224522 ACTATATATTAAGTGTCACGGGTCC 57.775 40.000 0.00 0.00 0.00 4.46
90 91 7.008941 ACTATATATTAAGTGTCACGGGTCCT 58.991 38.462 0.00 0.00 0.00 3.85
91 92 6.742559 ATATATTAAGTGTCACGGGTCCTT 57.257 37.500 0.00 0.00 0.00 3.36
92 93 7.844493 ATATATTAAGTGTCACGGGTCCTTA 57.156 36.000 0.00 0.00 0.00 2.69
93 94 3.665745 TTAAGTGTCACGGGTCCTTAC 57.334 47.619 0.00 0.00 0.00 2.34
94 95 1.416243 AAGTGTCACGGGTCCTTACA 58.584 50.000 0.00 0.00 0.00 2.41
95 96 1.416243 AGTGTCACGGGTCCTTACAA 58.584 50.000 0.00 0.00 0.00 2.41
96 97 1.764134 AGTGTCACGGGTCCTTACAAA 59.236 47.619 0.00 0.00 0.00 2.83
97 98 1.869132 GTGTCACGGGTCCTTACAAAC 59.131 52.381 0.00 0.00 0.00 2.93
98 99 1.485480 TGTCACGGGTCCTTACAAACA 59.515 47.619 0.00 0.00 0.00 2.83
99 100 1.869132 GTCACGGGTCCTTACAAACAC 59.131 52.381 0.00 0.00 0.00 3.32
100 101 1.485480 TCACGGGTCCTTACAAACACA 59.515 47.619 0.00 0.00 0.00 3.72
101 102 2.105134 TCACGGGTCCTTACAAACACAT 59.895 45.455 0.00 0.00 0.00 3.21
102 103 2.482721 CACGGGTCCTTACAAACACATC 59.517 50.000 0.00 0.00 0.00 3.06
103 104 2.081462 CGGGTCCTTACAAACACATCC 58.919 52.381 0.00 0.00 0.00 3.51
104 105 2.290071 CGGGTCCTTACAAACACATCCT 60.290 50.000 0.00 0.00 0.00 3.24
105 106 3.763057 GGGTCCTTACAAACACATCCTT 58.237 45.455 0.00 0.00 0.00 3.36
106 107 4.563993 CGGGTCCTTACAAACACATCCTTA 60.564 45.833 0.00 0.00 0.00 2.69
107 108 5.506708 GGGTCCTTACAAACACATCCTTAT 58.493 41.667 0.00 0.00 0.00 1.73
108 109 6.630863 CGGGTCCTTACAAACACATCCTTATA 60.631 42.308 0.00 0.00 0.00 0.98
109 110 6.766467 GGGTCCTTACAAACACATCCTTATAG 59.234 42.308 0.00 0.00 0.00 1.31
110 111 7.365295 GGGTCCTTACAAACACATCCTTATAGA 60.365 40.741 0.00 0.00 0.00 1.98
111 112 8.044908 GGTCCTTACAAACACATCCTTATAGAA 58.955 37.037 0.00 0.00 0.00 2.10
112 113 9.444600 GTCCTTACAAACACATCCTTATAGAAA 57.555 33.333 0.00 0.00 0.00 2.52
143 144 8.483307 AATTACATTCAAAATCTTGTGGATGC 57.517 30.769 1.86 0.00 34.45 3.91
144 145 4.487948 ACATTCAAAATCTTGTGGATGCG 58.512 39.130 1.86 0.00 34.45 4.73
145 146 4.218200 ACATTCAAAATCTTGTGGATGCGA 59.782 37.500 1.86 0.00 34.45 5.10
146 147 4.844998 TTCAAAATCTTGTGGATGCGAA 57.155 36.364 0.00 0.00 34.45 4.70
147 148 4.844998 TCAAAATCTTGTGGATGCGAAA 57.155 36.364 0.00 0.00 34.45 3.46
148 149 4.797471 TCAAAATCTTGTGGATGCGAAAG 58.203 39.130 0.00 0.00 34.45 2.62
149 150 4.851907 TCAAAATCTTGTGGATGCGAAAGC 60.852 41.667 0.00 0.00 45.00 3.51
150 151 7.786503 TCAAAATCTTGTGGATGCGAAAGCC 62.787 44.000 0.00 0.00 44.54 4.35
161 162 1.510844 CGAAAGCCATTTTCCCCCG 59.489 57.895 0.00 0.00 41.78 5.73
162 163 1.218047 GAAAGCCATTTTCCCCCGC 59.782 57.895 0.00 0.00 39.43 6.13
163 164 1.535202 AAAGCCATTTTCCCCCGCA 60.535 52.632 0.00 0.00 0.00 5.69
164 165 0.909133 AAAGCCATTTTCCCCCGCAT 60.909 50.000 0.00 0.00 0.00 4.73
165 166 1.329913 AAGCCATTTTCCCCCGCATC 61.330 55.000 0.00 0.00 0.00 3.91
166 167 2.796193 GCCATTTTCCCCCGCATCC 61.796 63.158 0.00 0.00 0.00 3.51
167 168 2.489275 CCATTTTCCCCCGCATCCG 61.489 63.158 0.00 0.00 0.00 4.18
168 169 2.833121 ATTTTCCCCCGCATCCGC 60.833 61.111 0.00 0.00 0.00 5.54
185 186 2.741985 CCGATGGCACGCTGTGAA 60.742 61.111 11.94 1.14 35.23 3.18
198 199 1.565305 CTGTGAACATAGCTCGAGGC 58.435 55.000 15.58 6.66 42.19 4.70
220 221 1.400530 CCTCTAGGCGTACCCCTTGG 61.401 65.000 3.96 1.87 36.41 3.61
231 232 2.629656 CCCCTTGGCAGAGCAAACG 61.630 63.158 0.00 0.00 0.00 3.60
240 241 4.688021 TGGCAGAGCAAACGTTTTAAAAT 58.312 34.783 11.66 0.00 0.00 1.82
298 558 5.316167 TCAATGTAGAGCAAACACCAAGAT 58.684 37.500 0.00 0.00 0.00 2.40
306 566 4.082125 AGCAAACACCAAGATCCTAAAGG 58.918 43.478 0.00 0.00 0.00 3.11
324 584 9.203163 TCCTAAAGGAAACCTGAAAAATAACAA 57.797 29.630 0.00 0.00 42.18 2.83
332 592 6.233905 ACCTGAAAAATAACAACCTTGCTT 57.766 33.333 0.00 0.00 0.00 3.91
346 606 4.683832 ACCTTGCTTATGTACGACAGATC 58.316 43.478 0.00 0.00 0.00 2.75
360 620 3.030291 GACAGATCTGGGTCTGATGTCT 58.970 50.000 26.08 0.56 46.77 3.41
401 661 2.430244 GAACCGACGCGCTCTTCA 60.430 61.111 5.73 0.00 0.00 3.02
415 675 3.628032 CGCTCTTCACTGGTGATCTAGTA 59.372 47.826 4.19 0.00 39.64 1.82
421 681 4.030216 TCACTGGTGATCTAGTAATGCCA 58.970 43.478 0.00 0.00 33.69 4.92
425 685 2.370189 GGTGATCTAGTAATGCCAGGCT 59.630 50.000 14.15 0.00 0.00 4.58
464 724 1.080569 GCTTGAACAATGCCACCGG 60.081 57.895 0.00 0.00 0.00 5.28
517 777 1.381872 CCCACCTCCCTCGACATCT 60.382 63.158 0.00 0.00 0.00 2.90
615 912 1.464376 CGGCGATGAGAGGGGTACAT 61.464 60.000 0.00 0.00 0.00 2.29
618 915 1.000283 GCGATGAGAGGGGTACATGAG 60.000 57.143 0.00 0.00 0.00 2.90
643 940 3.274067 GGCTAGGGTTTTGCCGTG 58.726 61.111 0.00 0.00 37.11 4.94
644 941 2.340328 GGCTAGGGTTTTGCCGTGG 61.340 63.158 0.00 0.00 37.11 4.94
645 942 3.274067 CTAGGGTTTTGCCGTGGC 58.726 61.111 3.30 3.30 42.35 5.01
646 943 2.282603 TAGGGTTTTGCCGTGGCC 60.283 61.111 8.69 0.00 41.09 5.36
699 996 1.527433 GGTTCTTCCAACCAGCCAGC 61.527 60.000 0.00 0.00 40.03 4.85
702 1007 1.975407 CTTCCAACCAGCCAGCCTG 60.975 63.158 0.00 0.00 41.41 4.85
732 1037 4.669700 TGTCTCCTACACAACCTAGCTAA 58.330 43.478 0.00 0.00 31.43 3.09
768 1073 2.095919 GTGTTTACACTTGATCACCGCC 60.096 50.000 5.78 0.00 43.25 6.13
769 1074 1.127951 GTTTACACTTGATCACCGCCG 59.872 52.381 0.00 0.00 0.00 6.46
772 1077 3.706373 ACTTGATCACCGCCGGCT 61.706 61.111 26.68 4.40 0.00 5.52
777 1082 1.300233 GATCACCGCCGGCTAGAAG 60.300 63.158 26.68 8.25 0.00 2.85
806 1118 6.994992 TGAAATTCGCTAAACAAAAACCAAC 58.005 32.000 0.00 0.00 0.00 3.77
810 1122 5.312120 TCGCTAAACAAAAACCAACTGAA 57.688 34.783 0.00 0.00 0.00 3.02
842 1154 4.382320 TGTACGCGCCTTGTCCCC 62.382 66.667 5.73 0.00 0.00 4.81
843 1155 4.078516 GTACGCGCCTTGTCCCCT 62.079 66.667 5.73 0.00 0.00 4.79
844 1156 2.362760 TACGCGCCTTGTCCCCTA 60.363 61.111 5.73 0.00 0.00 3.53
845 1157 1.759299 TACGCGCCTTGTCCCCTAT 60.759 57.895 5.73 0.00 0.00 2.57
846 1158 0.467844 TACGCGCCTTGTCCCCTATA 60.468 55.000 5.73 0.00 0.00 1.31
847 1159 1.006102 CGCGCCTTGTCCCCTATAG 60.006 63.158 0.00 0.00 0.00 1.31
909 1221 4.962155 AGCATAATCTAAGCCCAGTGTAC 58.038 43.478 0.00 0.00 0.00 2.90
910 1222 3.741344 GCATAATCTAAGCCCAGTGTACG 59.259 47.826 0.00 0.00 0.00 3.67
911 1223 4.739735 GCATAATCTAAGCCCAGTGTACGT 60.740 45.833 0.00 0.00 0.00 3.57
912 1224 5.508489 GCATAATCTAAGCCCAGTGTACGTA 60.508 44.000 0.00 0.00 0.00 3.57
956 1271 8.791355 ACTTAATTAACAACCATTTCAACGAC 57.209 30.769 0.00 0.00 0.00 4.34
957 1272 7.588488 ACTTAATTAACAACCATTTCAACGACG 59.412 33.333 0.00 0.00 0.00 5.12
958 1273 5.676532 ATTAACAACCATTTCAACGACGA 57.323 34.783 0.00 0.00 0.00 4.20
979 1298 4.035792 CGATCTTCTCCTATATAGCCACCG 59.964 50.000 4.04 0.00 0.00 4.94
1013 1334 1.073199 CCACACTCAAGGTCACCCC 59.927 63.158 0.00 0.00 0.00 4.95
1023 1344 2.131709 GGTCACCCCGATCGATCCA 61.132 63.158 18.66 0.00 0.00 3.41
1024 1345 1.472662 GGTCACCCCGATCGATCCAT 61.473 60.000 18.66 0.00 0.00 3.41
1025 1346 0.038159 GTCACCCCGATCGATCCATC 60.038 60.000 18.66 0.00 0.00 3.51
1052 1373 1.205655 CAGCAGAGACGAGATCCCAAA 59.794 52.381 0.00 0.00 0.00 3.28
1055 1376 2.275318 CAGAGACGAGATCCCAAAAGC 58.725 52.381 0.00 0.00 0.00 3.51
1058 1379 3.074412 GAGACGAGATCCCAAAAGCAAA 58.926 45.455 0.00 0.00 0.00 3.68
1060 1381 1.886542 ACGAGATCCCAAAAGCAAACC 59.113 47.619 0.00 0.00 0.00 3.27
1061 1382 1.135689 CGAGATCCCAAAAGCAAACCG 60.136 52.381 0.00 0.00 0.00 4.44
1062 1383 1.886542 GAGATCCCAAAAGCAAACCGT 59.113 47.619 0.00 0.00 0.00 4.83
1063 1384 3.078837 GAGATCCCAAAAGCAAACCGTA 58.921 45.455 0.00 0.00 0.00 4.02
1064 1385 3.081804 AGATCCCAAAAGCAAACCGTAG 58.918 45.455 0.00 0.00 0.00 3.51
1081 1402 3.488363 CGTAGGTTGGGATCTAGCTAGT 58.512 50.000 20.10 8.00 31.55 2.57
1085 1406 2.694109 GGTTGGGATCTAGCTAGTTCGT 59.306 50.000 20.10 5.64 0.00 3.85
1086 1407 3.243468 GGTTGGGATCTAGCTAGTTCGTC 60.243 52.174 20.10 15.69 0.00 4.20
1087 1408 2.219458 TGGGATCTAGCTAGTTCGTCG 58.781 52.381 20.10 0.00 0.00 5.12
1245 1566 3.041940 CGCTTCGTGGCCGTCTTT 61.042 61.111 0.00 0.00 35.01 2.52
1890 2223 1.226435 CTACTCGCTGCAGACGTCC 60.226 63.158 20.43 0.00 0.00 4.79
2153 2575 4.803613 CAGATGCAACCATGAACATGAATG 59.196 41.667 15.21 13.40 41.20 2.67
2206 2629 6.016777 GTGTTGGATGATCTTGAGTTGACTTT 60.017 38.462 0.00 0.00 0.00 2.66
2279 2705 2.231478 CTCCAACTCGAACAAGGAGCTA 59.769 50.000 9.15 0.00 39.39 3.32
2443 2875 2.096614 CGTTACAAACACGCGATTCCTT 60.097 45.455 15.93 0.00 0.00 3.36
2830 3332 0.250166 TCGTCTGGTCACTCGTCTCA 60.250 55.000 0.00 0.00 0.00 3.27
2841 3343 3.190744 TCACTCGTCTCATTCAGGTACAC 59.809 47.826 0.00 0.00 0.00 2.90
2842 3344 2.161808 ACTCGTCTCATTCAGGTACACG 59.838 50.000 0.00 0.00 0.00 4.49
2843 3345 1.135489 TCGTCTCATTCAGGTACACGC 60.135 52.381 0.00 0.00 0.00 5.34
2844 3346 1.402325 CGTCTCATTCAGGTACACGCA 60.402 52.381 0.00 0.00 0.00 5.24
2845 3347 2.735444 CGTCTCATTCAGGTACACGCAT 60.735 50.000 0.00 0.00 0.00 4.73
2846 3348 2.860735 GTCTCATTCAGGTACACGCATC 59.139 50.000 0.00 0.00 0.00 3.91
2847 3349 1.854743 CTCATTCAGGTACACGCATCG 59.145 52.381 0.00 0.00 0.00 3.84
2864 3366 2.620251 TCGATCACAATCCCATCACC 57.380 50.000 0.00 0.00 0.00 4.02
2865 3367 1.836802 TCGATCACAATCCCATCACCA 59.163 47.619 0.00 0.00 0.00 4.17
2866 3368 1.942657 CGATCACAATCCCATCACCAC 59.057 52.381 0.00 0.00 0.00 4.16
2867 3369 2.420547 CGATCACAATCCCATCACCACT 60.421 50.000 0.00 0.00 0.00 4.00
2868 3370 3.624777 GATCACAATCCCATCACCACTT 58.375 45.455 0.00 0.00 0.00 3.16
2869 3371 3.524095 TCACAATCCCATCACCACTTT 57.476 42.857 0.00 0.00 0.00 2.66
2870 3372 3.420893 TCACAATCCCATCACCACTTTC 58.579 45.455 0.00 0.00 0.00 2.62
2890 3392 0.948623 TGACAAACTGCATCCGTCCG 60.949 55.000 0.00 0.00 0.00 4.79
2893 3395 1.375523 AAACTGCATCCGTCCGTCC 60.376 57.895 0.00 0.00 0.00 4.79
2896 3398 1.884464 CTGCATCCGTCCGTCCATG 60.884 63.158 0.00 0.00 0.00 3.66
2899 3401 1.227645 CATCCGTCCGTCCATGCAT 60.228 57.895 0.00 0.00 0.00 3.96
2900 3402 1.069765 ATCCGTCCGTCCATGCATC 59.930 57.895 0.00 0.00 0.00 3.91
2901 3403 1.685355 ATCCGTCCGTCCATGCATCA 61.685 55.000 0.00 0.00 0.00 3.07
2902 3404 1.449423 CCGTCCGTCCATGCATCAA 60.449 57.895 0.00 0.00 0.00 2.57
2904 3406 1.016627 CGTCCGTCCATGCATCAATT 58.983 50.000 0.00 0.00 0.00 2.32
2905 3407 1.003545 CGTCCGTCCATGCATCAATTC 60.004 52.381 0.00 0.00 0.00 2.17
2909 3411 2.032550 CCGTCCATGCATCAATTCACTC 59.967 50.000 0.00 0.00 0.00 3.51
2910 3412 2.286008 CGTCCATGCATCAATTCACTCG 60.286 50.000 0.00 0.00 0.00 4.18
2911 3413 1.672363 TCCATGCATCAATTCACTCGC 59.328 47.619 0.00 0.00 0.00 5.03
2912 3414 1.674441 CCATGCATCAATTCACTCGCT 59.326 47.619 0.00 0.00 0.00 4.93
2913 3415 2.286831 CCATGCATCAATTCACTCGCTC 60.287 50.000 0.00 0.00 0.00 5.03
2914 3416 2.097680 TGCATCAATTCACTCGCTCA 57.902 45.000 0.00 0.00 0.00 4.26
2915 3417 2.635714 TGCATCAATTCACTCGCTCAT 58.364 42.857 0.00 0.00 0.00 2.90
2916 3418 2.353579 TGCATCAATTCACTCGCTCATG 59.646 45.455 0.00 0.00 0.00 3.07
2969 3478 5.683743 TGCTTGCGTACAAAAATCAAGTTAC 59.316 36.000 0.00 0.00 37.17 2.50
2970 3479 5.683743 GCTTGCGTACAAAAATCAAGTTACA 59.316 36.000 0.00 0.00 37.17 2.41
2971 3480 6.129457 GCTTGCGTACAAAAATCAAGTTACAG 60.129 38.462 0.00 0.00 37.17 2.74
2981 3490 9.301153 CAAAAATCAAGTTACAGTAGTTTGCTT 57.699 29.630 0.00 0.00 0.00 3.91
3018 3527 4.394300 GCTAGATTGACATTGCTGTGTCTT 59.606 41.667 18.40 9.43 46.70 3.01
3191 3700 2.189191 CTGGAGCCCTGTAGCAGCAA 62.189 60.000 0.00 0.00 34.23 3.91
3235 3744 2.867472 CGGATGCCGTGTTTGTCC 59.133 61.111 0.00 0.00 42.73 4.02
3236 3745 2.686816 CGGATGCCGTGTTTGTCCC 61.687 63.158 0.00 0.00 42.73 4.46
3258 3767 3.829026 CCATCCATAGAGTTCCAGATCGA 59.171 47.826 0.00 0.00 0.00 3.59
3285 3794 4.569564 CACACATGACATGATGACCAGTAG 59.430 45.833 22.19 1.75 0.00 2.57
3308 3831 5.184096 AGCAATATGTACTCTCATCTACGGG 59.816 44.000 0.00 0.00 0.00 5.28
3309 3832 5.403246 CAATATGTACTCTCATCTACGGGC 58.597 45.833 0.00 0.00 0.00 6.13
3310 3833 2.730934 TGTACTCTCATCTACGGGCT 57.269 50.000 0.00 0.00 0.00 5.19
3311 3834 3.851458 TGTACTCTCATCTACGGGCTA 57.149 47.619 0.00 0.00 0.00 3.93
3312 3835 3.474600 TGTACTCTCATCTACGGGCTAC 58.525 50.000 0.00 0.00 0.00 3.58
3404 3938 2.783135 TGCATCTGGAGGAAACTTCAC 58.217 47.619 0.00 0.00 42.58 3.18
3442 3976 1.415659 CTTAGGAGAGAGGGGCACATG 59.584 57.143 0.00 0.00 0.00 3.21
3443 3977 1.050988 TAGGAGAGAGGGGCACATGC 61.051 60.000 0.00 0.00 41.14 4.06
3444 3978 2.673200 GGAGAGAGGGGCACATGCA 61.673 63.158 6.15 0.00 44.36 3.96
3445 3979 1.530771 GAGAGAGGGGCACATGCAT 59.469 57.895 6.15 0.00 44.36 3.96
3446 3980 0.818445 GAGAGAGGGGCACATGCATG 60.818 60.000 25.09 25.09 44.36 4.06
3447 3981 2.441532 AGAGGGGCACATGCATGC 60.442 61.111 26.53 15.36 45.34 4.06
3448 3982 2.441532 GAGGGGCACATGCATGCT 60.442 61.111 26.53 14.65 45.38 3.79
3449 3983 1.152902 GAGGGGCACATGCATGCTA 60.153 57.895 26.53 5.73 45.38 3.49
3450 3984 1.450531 GAGGGGCACATGCATGCTAC 61.451 60.000 26.53 15.27 45.38 3.58
3451 3985 1.753848 GGGGCACATGCATGCTACA 60.754 57.895 26.53 0.00 45.38 2.74
3452 3986 1.111116 GGGGCACATGCATGCTACAT 61.111 55.000 26.53 3.52 45.38 2.29
3506 4040 4.949238 TGATGGTGCAATGCAAATACTACT 59.051 37.500 10.44 0.00 41.47 2.57
3507 4041 5.418524 TGATGGTGCAATGCAAATACTACTT 59.581 36.000 10.44 0.00 41.47 2.24
3569 4103 8.522830 TCTTCAAAATATTTCAGGTGGAACATC 58.477 33.333 0.10 0.00 44.52 3.06
3602 4136 6.529084 ACAATAATCAAGGGGTCCATATCA 57.471 37.500 0.00 0.00 0.00 2.15
3719 4254 3.424703 TCCCTTTCTCATTTGCTCCAAG 58.575 45.455 0.00 0.00 0.00 3.61
3755 4290 2.590821 ACCTATGCAATTGATCCAGGC 58.409 47.619 10.34 0.00 0.00 4.85
3803 4338 2.910688 TCTCTTGCGGAAAGTCTGTT 57.089 45.000 0.00 0.00 37.18 3.16
3815 4350 1.368850 GTCTGTTGCGACGTTTGCC 60.369 57.895 10.68 0.00 0.00 4.52
3875 4410 3.000819 ACCTCAATCGCCGTGGGA 61.001 61.111 0.00 0.00 0.00 4.37
3928 4464 5.063204 TGTTCAGGTTGGACAGAAACTATG 58.937 41.667 0.00 0.00 0.00 2.23
3937 4473 7.363793 GGTTGGACAGAAACTATGCCATAAATT 60.364 37.037 0.00 0.00 0.00 1.82
4092 4638 1.529865 GTGTTCGCCAAGGAGTACAAC 59.470 52.381 4.08 0.00 29.02 3.32
4137 4683 0.301687 CGTAAGCTAGCCATTGCACG 59.698 55.000 12.13 8.37 41.13 5.34
4147 4698 1.869342 GCCATTGCACGTCTTTTGCTT 60.869 47.619 0.00 0.00 40.86 3.91
4151 4702 5.398169 CCATTGCACGTCTTTTGCTTATAA 58.602 37.500 0.00 0.00 40.86 0.98
4152 4703 6.035843 CCATTGCACGTCTTTTGCTTATAAT 58.964 36.000 0.00 0.00 40.86 1.28
4153 4704 6.020440 CCATTGCACGTCTTTTGCTTATAATG 60.020 38.462 0.00 0.00 40.86 1.90
4156 4707 6.851609 TGCACGTCTTTTGCTTATAATGATT 58.148 32.000 0.00 0.00 40.86 2.57
4176 4727 6.977213 TGATTTGAGTAAAACTAAGGTTGCC 58.023 36.000 0.00 0.00 35.63 4.52
4178 4729 6.628919 TTTGAGTAAAACTAAGGTTGCCTC 57.371 37.500 0.00 0.00 35.63 4.70
4187 4738 4.907809 ACTAAGGTTGCCTCCTTTTACTC 58.092 43.478 13.41 0.00 44.36 2.59
4191 4742 4.542697 AGGTTGCCTCCTTTTACTCAAAA 58.457 39.130 0.00 0.00 33.52 2.44
4195 4746 6.765989 GGTTGCCTCCTTTTACTCAAAATTTT 59.234 34.615 0.00 0.00 33.27 1.82
4196 4747 7.929245 GGTTGCCTCCTTTTACTCAAAATTTTA 59.071 33.333 2.44 0.00 33.27 1.52
4288 4839 3.574826 ACGTTCTCCTTGGGATATAGAGC 59.425 47.826 0.00 0.00 0.00 4.09
4296 4847 5.363868 TCCTTGGGATATAGAGCCATAATCG 59.636 44.000 0.00 0.00 30.17 3.34
4315 4866 2.028112 TCGTGAAGAACTAAGGCTGCAT 60.028 45.455 0.50 0.00 0.00 3.96
4372 4928 2.673775 TGACCAATGAACATGTGGGT 57.326 45.000 0.00 2.46 36.69 4.51
4394 4950 5.355350 GGTTGTCTTGAATACCTGAAGATGG 59.645 44.000 0.00 0.00 0.00 3.51
4404 4960 4.959560 ACCTGAAGATGGATGAGATGAG 57.040 45.455 0.00 0.00 0.00 2.90
4412 4968 3.766068 TGGATGAGATGAGATCAAGCC 57.234 47.619 0.00 0.00 0.00 4.35
4586 5144 5.305812 CGTTAAATCGACAAGTTGCTACTG 58.694 41.667 0.36 0.00 34.01 2.74
4669 5258 9.227777 GTAAATGTAACTTGTAATCTCACCCTT 57.772 33.333 0.00 0.00 0.00 3.95
4713 5302 1.607148 CACATCGCATGGCAAGATCAT 59.393 47.619 0.00 0.00 33.60 2.45
4729 5318 1.297968 TCATCCTGATGCTTTGGGGA 58.702 50.000 2.18 0.00 38.65 4.81
4730 5319 1.640149 TCATCCTGATGCTTTGGGGAA 59.360 47.619 2.18 0.00 38.65 3.97
4780 5369 1.484240 CCTGGACAGATCTCTGAACCC 59.516 57.143 13.94 11.23 46.59 4.11
4782 5371 2.430332 CTGGACAGATCTCTGAACCCTC 59.570 54.545 13.94 0.84 46.59 4.30
4790 5381 6.208204 ACAGATCTCTGAACCCTCAAATTTTG 59.792 38.462 13.94 2.59 46.59 2.44
4794 5385 4.214310 TCTGAACCCTCAAATTTTGCAGA 58.786 39.130 4.19 7.36 0.00 4.26
4795 5386 4.037923 TCTGAACCCTCAAATTTTGCAGAC 59.962 41.667 4.19 0.00 0.00 3.51
4797 5388 4.202141 TGAACCCTCAAATTTTGCAGACAG 60.202 41.667 4.19 0.00 0.00 3.51
4832 5425 5.319140 CATCTCATGCATGGAAAAACAGA 57.681 39.130 25.97 18.64 0.00 3.41
4834 5427 7.034685 CATCTCATGCATGGAAAAACAGATA 57.965 36.000 25.97 1.55 0.00 1.98
4835 5428 6.441093 TCTCATGCATGGAAAAACAGATAC 57.559 37.500 25.97 0.00 0.00 2.24
4836 5429 6.182627 TCTCATGCATGGAAAAACAGATACT 58.817 36.000 25.97 0.00 0.00 2.12
4837 5430 6.317140 TCTCATGCATGGAAAAACAGATACTC 59.683 38.462 25.97 0.00 0.00 2.59
4838 5431 5.357878 TCATGCATGGAAAAACAGATACTCC 59.642 40.000 25.97 0.00 0.00 3.85
4839 5432 4.016444 TGCATGGAAAAACAGATACTCCC 58.984 43.478 0.00 0.00 0.00 4.30
4840 5433 4.016444 GCATGGAAAAACAGATACTCCCA 58.984 43.478 0.00 0.00 0.00 4.37
4841 5434 4.142381 GCATGGAAAAACAGATACTCCCAC 60.142 45.833 0.00 0.00 0.00 4.61
4842 5435 4.993705 TGGAAAAACAGATACTCCCACT 57.006 40.909 0.00 0.00 0.00 4.00
4843 5436 4.651778 TGGAAAAACAGATACTCCCACTG 58.348 43.478 0.00 0.00 37.62 3.66
4844 5437 4.104102 TGGAAAAACAGATACTCCCACTGT 59.896 41.667 0.00 0.00 45.02 3.55
4845 5438 5.308497 TGGAAAAACAGATACTCCCACTGTA 59.692 40.000 0.00 0.00 42.81 2.74
4846 5439 6.183361 TGGAAAAACAGATACTCCCACTGTAA 60.183 38.462 0.00 0.00 42.81 2.41
4847 5440 6.713450 GGAAAAACAGATACTCCCACTGTAAA 59.287 38.462 0.00 0.00 42.81 2.01
4848 5441 7.229907 GGAAAAACAGATACTCCCACTGTAAAA 59.770 37.037 0.00 0.00 42.81 1.52
4849 5442 8.528044 AAAAACAGATACTCCCACTGTAAAAA 57.472 30.769 0.00 0.00 42.81 1.94
4873 5466 7.964604 AAAAAGAAGTAGTGATCTAAACGCT 57.035 32.000 0.00 0.00 0.00 5.07
4874 5467 7.583860 AAAAGAAGTAGTGATCTAAACGCTC 57.416 36.000 0.00 0.00 0.00 5.03
4875 5468 6.518208 AAGAAGTAGTGATCTAAACGCTCT 57.482 37.500 0.00 0.00 0.00 4.09
4876 5469 6.518208 AGAAGTAGTGATCTAAACGCTCTT 57.482 37.500 0.00 0.00 0.00 2.85
4877 5470 7.627298 AGAAGTAGTGATCTAAACGCTCTTA 57.373 36.000 0.00 0.00 0.00 2.10
4878 5471 8.228035 AGAAGTAGTGATCTAAACGCTCTTAT 57.772 34.615 0.00 0.00 0.00 1.73
4879 5472 9.339850 AGAAGTAGTGATCTAAACGCTCTTATA 57.660 33.333 0.00 0.00 0.00 0.98
4893 5486 8.649973 AACGCTCTTATATTTCTTTACAGAGG 57.350 34.615 0.00 0.00 0.00 3.69
4894 5487 7.210873 ACGCTCTTATATTTCTTTACAGAGGG 58.789 38.462 8.36 8.36 42.53 4.30
4895 5488 6.647067 CGCTCTTATATTTCTTTACAGAGGGG 59.353 42.308 0.00 0.00 36.63 4.79
4909 5502 4.268359 ACAGAGGGGAGTACTAGTTTACG 58.732 47.826 0.00 0.00 0.00 3.18
4910 5503 4.018960 ACAGAGGGGAGTACTAGTTTACGA 60.019 45.833 0.00 0.00 0.00 3.43
4912 5505 4.018960 AGAGGGGAGTACTAGTTTACGACA 60.019 45.833 0.00 0.00 0.00 4.35
4978 5575 1.419762 TGAGTCCAAAGGCAAGTGCTA 59.580 47.619 2.85 0.00 41.70 3.49
4979 5576 1.807142 GAGTCCAAAGGCAAGTGCTAC 59.193 52.381 2.85 0.00 41.70 3.58
4980 5577 1.142870 AGTCCAAAGGCAAGTGCTACA 59.857 47.619 2.85 0.00 41.70 2.74
5019 5616 2.777692 TGGCTTCTAGGGATTTACCAGG 59.222 50.000 0.00 0.00 41.20 4.45
5060 5665 0.933700 AAGGGGGAGAGAGAGAGAGG 59.066 60.000 0.00 0.00 0.00 3.69
5154 5762 5.761165 TTAGTTAACTTGCAGGGTCAAAC 57.239 39.130 14.49 0.00 0.00 2.93
5255 7581 3.266772 ACATGAAACCTGATGGCCTAGAA 59.733 43.478 3.32 0.00 36.63 2.10
5273 7599 7.231722 GGCCTAGAATACTGAGACTCTGAATTA 59.768 40.741 15.53 0.00 0.00 1.40
5284 7610 9.959749 CTGAGACTCTGAATTATTTAGTACTCC 57.040 37.037 0.00 0.00 0.00 3.85
5285 7611 8.622157 TGAGACTCTGAATTATTTAGTACTCCG 58.378 37.037 0.00 0.00 0.00 4.63
5286 7612 8.522542 AGACTCTGAATTATTTAGTACTCCGT 57.477 34.615 0.00 0.00 0.00 4.69
5287 7613 9.624373 AGACTCTGAATTATTTAGTACTCCGTA 57.376 33.333 0.00 0.00 0.00 4.02
5300 7629 0.029567 CTCCGTAGATGGCGAGTGTC 59.970 60.000 0.00 0.00 0.00 3.67
5346 7675 1.660560 ATGCCTGCATGAAGGTTCGC 61.661 55.000 21.55 7.15 39.75 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.196103 GCTACATGATGATATTCTCTGCATAGA 58.804 37.037 0.00 0.00 0.00 1.98
1 2 8.198778 AGCTACATGATGATATTCTCTGCATAG 58.801 37.037 0.00 0.00 0.00 2.23
2 3 8.075761 AGCTACATGATGATATTCTCTGCATA 57.924 34.615 0.00 0.00 0.00 3.14
3 4 6.948589 AGCTACATGATGATATTCTCTGCAT 58.051 36.000 0.00 0.00 0.00 3.96
6 7 7.160049 ACCAAGCTACATGATGATATTCTCTG 58.840 38.462 0.00 0.00 0.00 3.35
8 9 7.118971 GGAACCAAGCTACATGATGATATTCTC 59.881 40.741 0.00 0.00 0.00 2.87
10 11 6.939163 AGGAACCAAGCTACATGATGATATTC 59.061 38.462 0.00 0.00 0.00 1.75
12 13 6.445451 AGGAACCAAGCTACATGATGATAT 57.555 37.500 0.00 0.00 0.00 1.63
13 14 5.894298 AGGAACCAAGCTACATGATGATA 57.106 39.130 0.00 0.00 0.00 2.15
14 15 4.785346 AGGAACCAAGCTACATGATGAT 57.215 40.909 0.00 0.00 0.00 2.45
15 16 4.574674 AAGGAACCAAGCTACATGATGA 57.425 40.909 0.00 0.00 0.00 2.92
16 17 6.949352 ATAAAGGAACCAAGCTACATGATG 57.051 37.500 0.00 0.00 0.00 3.07
17 18 7.961326 AAATAAAGGAACCAAGCTACATGAT 57.039 32.000 0.00 0.00 0.00 2.45
18 19 7.775053 AAAATAAAGGAACCAAGCTACATGA 57.225 32.000 0.00 0.00 0.00 3.07
41 42 5.370679 ACTACTAGGCCTTTTCACGAAAAA 58.629 37.500 12.58 0.00 39.49 1.94
42 43 4.964593 ACTACTAGGCCTTTTCACGAAAA 58.035 39.130 12.58 4.95 37.90 2.29
43 44 4.612264 ACTACTAGGCCTTTTCACGAAA 57.388 40.909 12.58 0.00 0.00 3.46
44 45 4.768968 AGTACTACTAGGCCTTTTCACGAA 59.231 41.667 12.58 0.00 0.00 3.85
45 46 4.338879 AGTACTACTAGGCCTTTTCACGA 58.661 43.478 12.58 0.00 0.00 4.35
46 47 4.715527 AGTACTACTAGGCCTTTTCACG 57.284 45.455 12.58 0.00 0.00 4.35
62 63 8.930846 ACCCGTGACACTTAATATATAGTACT 57.069 34.615 0.00 0.00 0.00 2.73
63 64 8.239998 GGACCCGTGACACTTAATATATAGTAC 58.760 40.741 3.68 0.00 0.00 2.73
64 65 8.166061 AGGACCCGTGACACTTAATATATAGTA 58.834 37.037 3.68 0.00 0.00 1.82
65 66 7.008941 AGGACCCGTGACACTTAATATATAGT 58.991 38.462 3.68 0.00 0.00 2.12
66 67 7.463961 AGGACCCGTGACACTTAATATATAG 57.536 40.000 3.68 0.00 0.00 1.31
67 68 7.844493 AAGGACCCGTGACACTTAATATATA 57.156 36.000 3.68 0.00 0.00 0.86
68 69 6.742559 AAGGACCCGTGACACTTAATATAT 57.257 37.500 3.68 0.00 0.00 0.86
69 70 6.606796 TGTAAGGACCCGTGACACTTAATATA 59.393 38.462 3.68 0.00 0.00 0.86
70 71 5.422970 TGTAAGGACCCGTGACACTTAATAT 59.577 40.000 3.68 0.00 0.00 1.28
71 72 4.771577 TGTAAGGACCCGTGACACTTAATA 59.228 41.667 3.68 0.00 0.00 0.98
72 73 3.579586 TGTAAGGACCCGTGACACTTAAT 59.420 43.478 3.68 0.00 0.00 1.40
73 74 2.964464 TGTAAGGACCCGTGACACTTAA 59.036 45.455 3.68 0.00 0.00 1.85
74 75 2.596346 TGTAAGGACCCGTGACACTTA 58.404 47.619 3.68 0.00 0.00 2.24
75 76 1.416243 TGTAAGGACCCGTGACACTT 58.584 50.000 3.68 0.00 0.00 3.16
76 77 1.416243 TTGTAAGGACCCGTGACACT 58.584 50.000 3.68 0.00 0.00 3.55
77 78 1.869132 GTTTGTAAGGACCCGTGACAC 59.131 52.381 0.00 0.00 0.00 3.67
78 79 1.485480 TGTTTGTAAGGACCCGTGACA 59.515 47.619 0.00 0.00 0.00 3.58
79 80 1.869132 GTGTTTGTAAGGACCCGTGAC 59.131 52.381 0.00 0.00 0.00 3.67
80 81 1.485480 TGTGTTTGTAAGGACCCGTGA 59.515 47.619 0.00 0.00 0.00 4.35
81 82 1.956297 TGTGTTTGTAAGGACCCGTG 58.044 50.000 0.00 0.00 0.00 4.94
82 83 2.551504 GGATGTGTTTGTAAGGACCCGT 60.552 50.000 0.00 0.00 0.00 5.28
83 84 2.081462 GGATGTGTTTGTAAGGACCCG 58.919 52.381 0.00 0.00 0.00 5.28
84 85 3.434940 AGGATGTGTTTGTAAGGACCC 57.565 47.619 0.00 0.00 0.00 4.46
85 86 7.562135 TCTATAAGGATGTGTTTGTAAGGACC 58.438 38.462 0.00 0.00 0.00 4.46
86 87 9.444600 TTTCTATAAGGATGTGTTTGTAAGGAC 57.555 33.333 0.00 0.00 0.00 3.85
117 118 8.938906 GCATCCACAAGATTTTGAATGTAATTT 58.061 29.630 2.48 0.00 37.73 1.82
118 119 7.276218 CGCATCCACAAGATTTTGAATGTAATT 59.724 33.333 2.48 0.00 37.73 1.40
119 120 6.753279 CGCATCCACAAGATTTTGAATGTAAT 59.247 34.615 2.48 0.00 37.73 1.89
120 121 6.072230 TCGCATCCACAAGATTTTGAATGTAA 60.072 34.615 2.48 0.00 37.73 2.41
121 122 5.414144 TCGCATCCACAAGATTTTGAATGTA 59.586 36.000 2.48 0.00 37.73 2.29
122 123 4.218200 TCGCATCCACAAGATTTTGAATGT 59.782 37.500 2.48 0.00 37.73 2.71
123 124 4.735985 TCGCATCCACAAGATTTTGAATG 58.264 39.130 2.48 5.04 37.73 2.67
124 125 5.389859 TTCGCATCCACAAGATTTTGAAT 57.610 34.783 2.48 0.00 37.73 2.57
125 126 4.844998 TTCGCATCCACAAGATTTTGAA 57.155 36.364 2.48 0.00 37.73 2.69
126 127 4.797471 CTTTCGCATCCACAAGATTTTGA 58.203 39.130 2.48 0.00 37.73 2.69
127 128 3.365820 GCTTTCGCATCCACAAGATTTTG 59.634 43.478 0.00 0.00 36.89 2.44
128 129 3.578688 GCTTTCGCATCCACAAGATTTT 58.421 40.909 0.00 0.00 35.78 1.82
129 130 2.094545 GGCTTTCGCATCCACAAGATTT 60.095 45.455 0.00 0.00 38.10 2.17
130 131 1.474077 GGCTTTCGCATCCACAAGATT 59.526 47.619 0.00 0.00 38.10 2.40
131 132 1.098050 GGCTTTCGCATCCACAAGAT 58.902 50.000 0.00 0.00 38.10 2.40
132 133 0.250684 TGGCTTTCGCATCCACAAGA 60.251 50.000 0.00 0.00 38.10 3.02
133 134 0.813184 ATGGCTTTCGCATCCACAAG 59.187 50.000 0.00 0.00 38.10 3.16
134 135 1.255882 AATGGCTTTCGCATCCACAA 58.744 45.000 0.00 0.00 38.10 3.33
135 136 1.255882 AAATGGCTTTCGCATCCACA 58.744 45.000 0.00 0.00 38.10 4.17
136 137 2.262211 GAAAATGGCTTTCGCATCCAC 58.738 47.619 0.00 0.00 34.41 4.02
137 138 1.204467 GGAAAATGGCTTTCGCATCCA 59.796 47.619 0.00 0.00 43.88 3.41
138 139 1.926561 GGAAAATGGCTTTCGCATCC 58.073 50.000 0.00 0.00 43.88 3.51
143 144 1.510844 CGGGGGAAAATGGCTTTCG 59.489 57.895 0.00 0.00 43.88 3.46
144 145 1.218047 GCGGGGGAAAATGGCTTTC 59.782 57.895 0.00 0.00 42.45 2.62
145 146 0.909133 ATGCGGGGGAAAATGGCTTT 60.909 50.000 0.00 0.00 0.00 3.51
146 147 1.306056 ATGCGGGGGAAAATGGCTT 60.306 52.632 0.00 0.00 0.00 4.35
147 148 1.758122 GATGCGGGGGAAAATGGCT 60.758 57.895 0.00 0.00 0.00 4.75
148 149 2.796193 GGATGCGGGGGAAAATGGC 61.796 63.158 0.00 0.00 0.00 4.40
149 150 2.489275 CGGATGCGGGGGAAAATGG 61.489 63.158 0.00 0.00 0.00 3.16
150 151 3.119193 CGGATGCGGGGGAAAATG 58.881 61.111 0.00 0.00 0.00 2.32
151 152 2.833121 GCGGATGCGGGGGAAAAT 60.833 61.111 9.20 0.00 0.00 1.82
168 169 2.741985 TTCACAGCGTGCCATCGG 60.742 61.111 4.15 0.00 32.98 4.18
169 170 1.638388 ATGTTCACAGCGTGCCATCG 61.638 55.000 4.15 0.00 32.98 3.84
170 171 1.328680 CTATGTTCACAGCGTGCCATC 59.671 52.381 12.82 3.22 32.98 3.51
171 172 1.372582 CTATGTTCACAGCGTGCCAT 58.627 50.000 13.48 13.48 32.98 4.40
172 173 1.298157 GCTATGTTCACAGCGTGCCA 61.298 55.000 4.15 4.32 32.98 4.92
173 174 1.021390 AGCTATGTTCACAGCGTGCC 61.021 55.000 4.15 0.00 42.74 5.01
174 175 0.371645 GAGCTATGTTCACAGCGTGC 59.628 55.000 4.15 0.00 42.74 5.34
175 176 0.642291 CGAGCTATGTTCACAGCGTG 59.358 55.000 0.00 2.79 42.74 5.34
176 177 0.526211 TCGAGCTATGTTCACAGCGT 59.474 50.000 0.00 0.00 42.74 5.07
177 178 1.195347 CTCGAGCTATGTTCACAGCG 58.805 55.000 0.00 0.00 42.74 5.18
178 179 1.565305 CCTCGAGCTATGTTCACAGC 58.435 55.000 6.99 0.00 38.09 4.40
179 180 1.565305 GCCTCGAGCTATGTTCACAG 58.435 55.000 6.99 0.00 38.99 3.66
180 181 0.175760 GGCCTCGAGCTATGTTCACA 59.824 55.000 6.99 0.00 43.05 3.58
181 182 0.872021 CGGCCTCGAGCTATGTTCAC 60.872 60.000 6.99 0.00 43.05 3.18
182 183 1.437573 CGGCCTCGAGCTATGTTCA 59.562 57.895 6.99 0.00 43.05 3.18
185 186 3.917760 GGCGGCCTCGAGCTATGT 61.918 66.667 12.87 0.00 43.05 2.29
206 207 3.717294 CTGCCAAGGGGTACGCCT 61.717 66.667 25.02 25.02 44.92 5.52
210 211 0.251165 TTTGCTCTGCCAAGGGGTAC 60.251 55.000 0.00 0.00 36.17 3.34
212 213 1.531602 GTTTGCTCTGCCAAGGGGT 60.532 57.895 0.00 0.00 36.17 4.95
220 221 6.267500 TGAATTTTAAAACGTTTGCTCTGC 57.733 33.333 15.46 2.95 0.00 4.26
281 282 5.755409 TTAGGATCTTGGTGTTTGCTCTA 57.245 39.130 0.00 0.00 0.00 2.43
283 284 4.156739 CCTTTAGGATCTTGGTGTTTGCTC 59.843 45.833 0.00 0.00 37.39 4.26
285 286 4.079253 TCCTTTAGGATCTTGGTGTTTGC 58.921 43.478 0.00 0.00 39.78 3.68
298 558 8.770010 TGTTATTTTTCAGGTTTCCTTTAGGA 57.230 30.769 0.00 0.00 43.73 2.94
306 566 6.761242 AGCAAGGTTGTTATTTTTCAGGTTTC 59.239 34.615 0.00 0.00 0.00 2.78
309 569 5.869649 AGCAAGGTTGTTATTTTTCAGGT 57.130 34.783 0.00 0.00 0.00 4.00
324 584 4.402793 AGATCTGTCGTACATAAGCAAGGT 59.597 41.667 0.00 0.00 0.00 3.50
332 592 3.883489 CAGACCCAGATCTGTCGTACATA 59.117 47.826 21.11 0.00 41.12 2.29
346 606 2.100584 GTGAGCTAGACATCAGACCCAG 59.899 54.545 0.00 0.00 0.00 4.45
401 661 3.389329 CCTGGCATTACTAGATCACCAGT 59.611 47.826 16.59 0.00 41.29 4.00
415 675 0.546122 TTCATCGGTAGCCTGGCATT 59.454 50.000 22.65 3.15 0.00 3.56
421 681 1.736586 CGCTCTTCATCGGTAGCCT 59.263 57.895 0.00 0.00 0.00 4.58
425 685 1.141019 GTGGCGCTCTTCATCGGTA 59.859 57.895 7.64 0.00 0.00 4.02
468 728 0.807667 CGGTCTACATCAGGCAGTGC 60.808 60.000 6.55 6.55 0.00 4.40
475 735 1.299468 GAGCGGCGGTCTACATCAG 60.299 63.158 29.74 0.00 0.00 2.90
479 739 3.506096 CTCGAGCGGCGGTCTACA 61.506 66.667 32.55 17.48 41.33 2.74
503 763 1.134965 GTTGTGAGATGTCGAGGGAGG 60.135 57.143 0.00 0.00 0.00 4.30
508 768 2.069273 GGGTTGTTGTGAGATGTCGAG 58.931 52.381 0.00 0.00 0.00 4.04
514 774 2.093973 CGCTAGAGGGTTGTTGTGAGAT 60.094 50.000 0.00 0.00 0.00 2.75
517 777 0.320421 GCGCTAGAGGGTTGTTGTGA 60.320 55.000 0.00 0.00 0.00 3.58
593 890 4.271816 CCCCTCTCATCGCCGTCG 62.272 72.222 0.00 0.00 0.00 5.12
595 892 2.125961 GTACCCCTCTCATCGCCGT 61.126 63.158 0.00 0.00 0.00 5.68
658 955 0.519077 GCTGGTTTTTCTCGAGGCTG 59.481 55.000 13.56 0.00 0.00 4.85
699 996 2.567169 TGTAGGAGACATGAACACCAGG 59.433 50.000 0.00 0.00 31.20 4.45
702 1007 3.678056 TGTGTAGGAGACATGAACACC 57.322 47.619 0.00 1.30 41.14 4.16
705 1010 4.273148 AGGTTGTGTAGGAGACATGAAC 57.727 45.455 0.00 0.00 41.14 3.18
732 1037 7.155655 GTGTAAACACTTCTACTAGCTAGGT 57.844 40.000 24.35 9.53 43.25 3.08
754 1059 2.572095 TAGCCGGCGGTGATCAAGTG 62.572 60.000 28.82 0.00 0.00 3.16
757 1062 1.609635 TTCTAGCCGGCGGTGATCAA 61.610 55.000 28.82 11.33 0.00 2.57
759 1064 1.300233 CTTCTAGCCGGCGGTGATC 60.300 63.158 28.82 10.78 0.00 2.92
760 1065 1.327690 TTCTTCTAGCCGGCGGTGAT 61.328 55.000 28.82 16.27 0.00 3.06
761 1066 1.537814 TTTCTTCTAGCCGGCGGTGA 61.538 55.000 28.82 19.67 0.00 4.02
762 1067 0.672401 TTTTCTTCTAGCCGGCGGTG 60.672 55.000 28.82 17.65 0.00 4.94
763 1068 0.252197 ATTTTCTTCTAGCCGGCGGT 59.748 50.000 28.82 16.56 0.00 5.68
765 1070 1.651987 TCATTTTCTTCTAGCCGGCG 58.348 50.000 23.20 8.11 0.00 6.46
766 1071 4.639135 ATTTCATTTTCTTCTAGCCGGC 57.361 40.909 21.89 21.89 0.00 6.13
768 1073 4.730521 GCGAATTTCATTTTCTTCTAGCCG 59.269 41.667 0.00 0.00 0.00 5.52
769 1074 5.884771 AGCGAATTTCATTTTCTTCTAGCC 58.115 37.500 0.00 0.00 0.00 3.93
777 1082 9.153952 GGTTTTTGTTTAGCGAATTTCATTTTC 57.846 29.630 0.00 0.00 0.00 2.29
806 1118 2.247637 CACTTGCACGCATTCATTCAG 58.752 47.619 0.00 0.00 0.00 3.02
810 1122 1.128507 CGTACACTTGCACGCATTCAT 59.871 47.619 0.00 0.00 0.00 2.57
831 1143 1.546476 CTAGCTATAGGGGACAAGGCG 59.454 57.143 1.04 0.00 0.00 5.52
910 1222 5.429130 AGTACTAAGTGGTACGTACCCTAC 58.571 45.833 35.71 28.39 45.87 3.18
911 1223 5.693769 AGTACTAAGTGGTACGTACCCTA 57.306 43.478 35.71 23.89 45.87 3.53
912 1224 4.576330 AGTACTAAGTGGTACGTACCCT 57.424 45.455 35.71 28.61 45.87 4.34
929 1241 9.881529 TCGTTGAAATGGTTGTTAATTAAGTAC 57.118 29.630 0.00 0.03 0.00 2.73
931 1243 7.588488 CGTCGTTGAAATGGTTGTTAATTAAGT 59.412 33.333 0.00 0.00 0.00 2.24
956 1271 4.035792 CGGTGGCTATATAGGAGAAGATCG 59.964 50.000 11.72 0.00 0.00 3.69
957 1272 4.202070 GCGGTGGCTATATAGGAGAAGATC 60.202 50.000 11.72 0.00 35.83 2.75
958 1273 3.702045 GCGGTGGCTATATAGGAGAAGAT 59.298 47.826 11.72 0.00 35.83 2.40
979 1298 3.259625 AGTGTGGGAAGAGAAGTAGAAGC 59.740 47.826 0.00 0.00 0.00 3.86
1023 1344 1.459455 CGTCTCTGCTGGGGATCGAT 61.459 60.000 0.00 0.00 0.00 3.59
1024 1345 2.121538 CGTCTCTGCTGGGGATCGA 61.122 63.158 0.00 0.00 0.00 3.59
1025 1346 2.069465 CTCGTCTCTGCTGGGGATCG 62.069 65.000 0.00 0.00 0.00 3.69
1027 1348 0.105760 ATCTCGTCTCTGCTGGGGAT 60.106 55.000 0.00 0.00 0.00 3.85
1028 1349 0.753479 GATCTCGTCTCTGCTGGGGA 60.753 60.000 0.00 0.00 0.00 4.81
1029 1350 1.739049 GATCTCGTCTCTGCTGGGG 59.261 63.158 0.00 0.00 0.00 4.96
1030 1351 1.739049 GGATCTCGTCTCTGCTGGG 59.261 63.158 0.00 0.00 0.00 4.45
1031 1352 1.039785 TGGGATCTCGTCTCTGCTGG 61.040 60.000 0.00 0.00 0.00 4.85
1052 1373 0.475044 TCCCAACCTACGGTTTGCTT 59.525 50.000 0.00 0.00 44.33 3.91
1055 1376 2.781681 AGATCCCAACCTACGGTTTG 57.218 50.000 0.00 0.00 44.33 2.93
1058 1379 1.063114 AGCTAGATCCCAACCTACGGT 60.063 52.381 0.00 0.00 37.65 4.83
1060 1381 3.488363 ACTAGCTAGATCCCAACCTACG 58.512 50.000 27.45 0.00 0.00 3.51
1061 1382 4.023021 CGAACTAGCTAGATCCCAACCTAC 60.023 50.000 27.45 0.00 0.00 3.18
1062 1383 4.142790 CGAACTAGCTAGATCCCAACCTA 58.857 47.826 27.45 0.00 0.00 3.08
1063 1384 2.959707 CGAACTAGCTAGATCCCAACCT 59.040 50.000 27.45 0.00 0.00 3.50
1064 1385 2.694109 ACGAACTAGCTAGATCCCAACC 59.306 50.000 27.45 1.59 0.00 3.77
1797 2121 4.220163 TAGATCCCGGAGCGCCCT 62.220 66.667 0.73 0.00 0.00 5.19
1908 2241 0.109342 ACTGGTTGAAGCTGGACTGG 59.891 55.000 6.24 0.00 0.00 4.00
2153 2575 8.787852 AGATCCAAACAAGAACTAAAGACAATC 58.212 33.333 0.00 0.00 0.00 2.67
2206 2629 5.205517 ACACATTATCCAAAGGAATCCCA 57.794 39.130 0.00 0.00 34.34 4.37
2411 2843 2.071540 GTTTGTAACGTACCTCTGGGC 58.928 52.381 0.00 0.00 35.63 5.36
2443 2875 1.243902 GGCAACCTTGATTTGGACGA 58.756 50.000 0.00 0.00 0.00 4.20
2830 3332 2.100749 TGATCGATGCGTGTACCTGAAT 59.899 45.455 0.54 0.00 0.00 2.57
2841 3343 1.462283 GATGGGATTGTGATCGATGCG 59.538 52.381 0.54 0.00 32.84 4.73
2842 3344 2.225019 GTGATGGGATTGTGATCGATGC 59.775 50.000 0.54 0.00 32.84 3.91
2843 3345 2.810274 GGTGATGGGATTGTGATCGATG 59.190 50.000 0.54 0.00 32.84 3.84
2844 3346 2.439135 TGGTGATGGGATTGTGATCGAT 59.561 45.455 0.00 0.00 32.84 3.59
2845 3347 1.836802 TGGTGATGGGATTGTGATCGA 59.163 47.619 0.00 0.00 32.84 3.59
2846 3348 1.942657 GTGGTGATGGGATTGTGATCG 59.057 52.381 0.00 0.00 32.84 3.69
2847 3349 3.287867 AGTGGTGATGGGATTGTGATC 57.712 47.619 0.00 0.00 0.00 2.92
2864 3366 3.607775 CGGATGCAGTTTGTCAGAAAGTG 60.608 47.826 0.00 0.00 34.55 3.16
2865 3367 2.549754 CGGATGCAGTTTGTCAGAAAGT 59.450 45.455 0.00 0.00 0.00 2.66
2866 3368 2.549754 ACGGATGCAGTTTGTCAGAAAG 59.450 45.455 0.00 0.00 0.00 2.62
2867 3369 2.548057 GACGGATGCAGTTTGTCAGAAA 59.452 45.455 0.00 0.00 0.00 2.52
2868 3370 2.143122 GACGGATGCAGTTTGTCAGAA 58.857 47.619 0.00 0.00 0.00 3.02
2869 3371 1.608025 GGACGGATGCAGTTTGTCAGA 60.608 52.381 11.64 0.00 0.00 3.27
2870 3372 0.798776 GGACGGATGCAGTTTGTCAG 59.201 55.000 11.64 0.00 0.00 3.51
2890 3392 2.540361 GCGAGTGAATTGATGCATGGAC 60.540 50.000 2.46 0.00 0.00 4.02
2893 3395 2.353579 TGAGCGAGTGAATTGATGCATG 59.646 45.455 2.46 0.00 0.00 4.06
2896 3398 2.853662 GCATGAGCGAGTGAATTGATGC 60.854 50.000 0.00 0.00 0.00 3.91
2899 3401 2.097680 TGCATGAGCGAGTGAATTGA 57.902 45.000 0.00 0.00 46.23 2.57
2900 3402 2.716398 CATGCATGAGCGAGTGAATTG 58.284 47.619 22.59 0.00 46.23 2.32
2901 3403 1.065102 GCATGCATGAGCGAGTGAATT 59.935 47.619 30.64 0.00 46.23 2.17
2902 3404 0.661552 GCATGCATGAGCGAGTGAAT 59.338 50.000 30.64 0.00 46.23 2.57
2904 3406 0.463116 ATGCATGCATGAGCGAGTGA 60.463 50.000 31.74 0.00 46.23 3.41
2905 3407 2.022520 ATGCATGCATGAGCGAGTG 58.977 52.632 31.74 2.71 46.23 3.51
2981 3490 4.893524 TCAATCTAGCCTCGAATCCAGTTA 59.106 41.667 0.00 0.00 0.00 2.24
3039 3548 9.288576 TGGGACAATTATAAGCAATCTAATCTG 57.711 33.333 0.00 0.00 31.92 2.90
3163 3672 3.403558 GGGCTCCAGGTCAGGTCC 61.404 72.222 0.00 0.00 0.00 4.46
3191 3700 5.184479 TGCAGCTGATTTTCTAGATTTGCTT 59.816 36.000 20.43 0.00 0.00 3.91
3235 3744 3.056250 CGATCTGGAACTCTATGGATGGG 60.056 52.174 0.00 0.00 0.00 4.00
3236 3745 3.829026 TCGATCTGGAACTCTATGGATGG 59.171 47.826 0.00 0.00 0.00 3.51
3258 3767 3.129813 GGTCATCATGTCATGTGTGCAAT 59.870 43.478 12.54 0.00 0.00 3.56
3285 3794 5.403246 CCCGTAGATGAGAGTACATATTGC 58.597 45.833 0.00 0.00 0.00 3.56
3308 3831 4.865761 TCGTGCATCGGCCGTAGC 62.866 66.667 28.80 28.80 40.13 3.58
3309 3832 2.954868 GTCGTGCATCGGCCGTAG 60.955 66.667 27.15 19.59 38.31 3.51
3310 3833 3.750155 TGTCGTGCATCGGCCGTA 61.750 61.111 27.15 12.70 44.19 4.02
3313 3836 3.788766 GTGTGTCGTGCATCGGCC 61.789 66.667 10.06 0.00 44.19 6.13
3314 3837 3.788766 GGTGTGTCGTGCATCGGC 61.789 66.667 6.38 6.38 45.13 5.54
3315 3838 3.478394 CGGTGTGTCGTGCATCGG 61.478 66.667 8.46 0.00 36.88 4.18
3316 3839 2.733218 ACGGTGTGTCGTGCATCG 60.733 61.111 0.00 7.48 44.98 3.84
3404 3938 0.255318 AGAATGCCCTCTGCTTCCTG 59.745 55.000 0.00 0.00 42.00 3.86
3422 3956 1.415659 CATGTGCCCCTCTCTCCTAAG 59.584 57.143 0.00 0.00 0.00 2.18
3423 3957 1.500474 CATGTGCCCCTCTCTCCTAA 58.500 55.000 0.00 0.00 0.00 2.69
3446 3980 3.003068 CCAAAGCTGTAGATGCATGTAGC 59.997 47.826 2.46 7.28 45.96 3.58
3447 3981 3.562973 CCCAAAGCTGTAGATGCATGTAG 59.437 47.826 2.46 0.00 0.00 2.74
3448 3982 3.054434 ACCCAAAGCTGTAGATGCATGTA 60.054 43.478 2.46 0.01 0.00 2.29
3449 3983 2.291153 ACCCAAAGCTGTAGATGCATGT 60.291 45.455 2.46 1.37 0.00 3.21
3450 3984 2.357009 GACCCAAAGCTGTAGATGCATG 59.643 50.000 2.46 0.00 0.00 4.06
3451 3985 2.240667 AGACCCAAAGCTGTAGATGCAT 59.759 45.455 0.00 0.00 0.00 3.96
3452 3986 1.630369 AGACCCAAAGCTGTAGATGCA 59.370 47.619 0.00 0.00 0.00 3.96
3542 4076 8.421249 TGTTCCACCTGAAATATTTTGAAGAT 57.579 30.769 1.43 0.00 33.94 2.40
3569 4103 4.763793 CCCTTGATTATTGTAGGCATCTGG 59.236 45.833 0.00 0.00 0.00 3.86
3682 4217 6.373759 AGAAAGGGAAAGGTACAGAATTTGT 58.626 36.000 0.00 0.22 43.96 2.83
3685 4220 6.200878 TGAGAAAGGGAAAGGTACAGAATT 57.799 37.500 0.00 0.00 0.00 2.17
3689 4224 5.335976 GCAAATGAGAAAGGGAAAGGTACAG 60.336 44.000 0.00 0.00 0.00 2.74
3693 4228 3.829026 GAGCAAATGAGAAAGGGAAAGGT 59.171 43.478 0.00 0.00 0.00 3.50
3700 4235 5.458041 TTTCTTGGAGCAAATGAGAAAGG 57.542 39.130 0.00 0.00 32.97 3.11
3719 4254 5.065474 TGCATAGGTTACCGTTAGCATTTTC 59.935 40.000 9.07 0.00 0.00 2.29
3755 4290 1.093159 GTTGCAGAGCCATGAAGAGG 58.907 55.000 0.00 0.00 0.00 3.69
3803 4338 4.036804 GCCATGGCAAACGTCGCA 62.037 61.111 32.08 0.00 41.49 5.10
3815 4350 0.321564 TCAAGAACCTCACCGCCATG 60.322 55.000 0.00 0.00 0.00 3.66
3937 4473 9.589461 TGGGTATAACTTTGGAGTCAAATTTAA 57.411 29.630 0.00 0.00 39.61 1.52
4024 4570 3.571571 CTGCCTGTTGAACAATCACATG 58.428 45.455 0.00 0.00 34.61 3.21
4092 4638 4.274459 GTGCTAAGTATTTGAGGATGGCAG 59.726 45.833 0.00 0.00 0.00 4.85
4151 4702 7.451566 AGGCAACCTTAGTTTTACTCAAATCAT 59.548 33.333 0.00 0.00 32.45 2.45
4152 4703 6.775629 AGGCAACCTTAGTTTTACTCAAATCA 59.224 34.615 0.00 0.00 32.45 2.57
4153 4704 7.215719 AGGCAACCTTAGTTTTACTCAAATC 57.784 36.000 0.00 0.00 32.45 2.17
4156 4707 5.067954 GGAGGCAACCTTAGTTTTACTCAA 58.932 41.667 0.00 0.00 31.76 3.02
4170 4721 4.929819 TTTTGAGTAAAAGGAGGCAACC 57.070 40.909 0.00 0.00 32.31 3.77
4171 4722 7.786178 AAAATTTTGAGTAAAAGGAGGCAAC 57.214 32.000 1.75 0.00 39.01 4.17
4175 4726 9.487790 TGCATTAAAATTTTGAGTAAAAGGAGG 57.512 29.630 13.76 0.00 39.01 4.30
4288 4839 5.235186 CAGCCTTAGTTCTTCACGATTATGG 59.765 44.000 0.00 0.00 0.00 2.74
4296 4847 5.363939 AGATATGCAGCCTTAGTTCTTCAC 58.636 41.667 0.00 0.00 0.00 3.18
4356 4907 2.892852 AGACAACCCACATGTTCATTGG 59.107 45.455 14.19 5.28 0.00 3.16
4372 4928 6.373005 TCCATCTTCAGGTATTCAAGACAA 57.627 37.500 0.00 0.00 0.00 3.18
4394 4950 3.657015 TCGGCTTGATCTCATCTCATC 57.343 47.619 0.00 0.00 0.00 2.92
4404 4960 3.477210 AACCTATCCTTCGGCTTGATC 57.523 47.619 0.00 0.00 0.00 2.92
4412 4968 8.134261 GTCCTACTTAGTTTAACCTATCCTTCG 58.866 40.741 0.00 0.00 0.00 3.79
4423 4979 6.894103 CCTGTCTAGGGTCCTACTTAGTTTAA 59.106 42.308 0.00 0.00 40.63 1.52
4424 4980 6.218315 TCCTGTCTAGGGTCCTACTTAGTTTA 59.782 42.308 0.00 0.00 44.70 2.01
4425 4981 5.016031 TCCTGTCTAGGGTCCTACTTAGTTT 59.984 44.000 0.00 0.00 44.70 2.66
4586 5144 4.328440 CACTCACTGGACGAATCTTGATTC 59.672 45.833 12.02 12.02 0.00 2.52
4636 5225 4.759516 ACAAGTTACATTTACCTTGGCG 57.240 40.909 1.86 0.00 38.84 5.69
4669 5258 5.761234 GGGAACCGCATGTATTAGTTTATCA 59.239 40.000 0.00 0.00 40.86 2.15
4713 5302 2.109834 TCTTTTCCCCAAAGCATCAGGA 59.890 45.455 0.00 0.00 41.72 3.86
4780 5369 5.450171 CAGAGTCTGTCTGCAAAATTTGAG 58.550 41.667 12.28 4.60 46.41 3.02
4794 5385 3.768215 TGAGATGCAGATTCAGAGTCTGT 59.232 43.478 20.79 5.46 43.86 3.41
4795 5386 4.388378 TGAGATGCAGATTCAGAGTCTG 57.612 45.455 16.82 16.82 44.60 3.51
4824 5417 8.528044 TTTTTACAGTGGGAGTATCTGTTTTT 57.472 30.769 2.52 0.00 41.66 1.94
4849 5442 7.873505 AGAGCGTTTAGATCACTACTTCTTTTT 59.126 33.333 0.00 0.00 37.82 1.94
4850 5443 7.379750 AGAGCGTTTAGATCACTACTTCTTTT 58.620 34.615 0.00 0.00 37.82 2.27
4851 5444 6.926313 AGAGCGTTTAGATCACTACTTCTTT 58.074 36.000 0.00 0.00 37.82 2.52
4852 5445 6.518208 AGAGCGTTTAGATCACTACTTCTT 57.482 37.500 0.00 0.00 37.82 2.52
4853 5446 6.518208 AAGAGCGTTTAGATCACTACTTCT 57.482 37.500 0.00 0.00 37.82 2.85
4867 5460 9.099454 CCTCTGTAAAGAAATATAAGAGCGTTT 57.901 33.333 0.00 0.00 0.00 3.60
4868 5461 7.711339 CCCTCTGTAAAGAAATATAAGAGCGTT 59.289 37.037 0.00 0.00 0.00 4.84
4869 5462 7.210873 CCCTCTGTAAAGAAATATAAGAGCGT 58.789 38.462 0.00 0.00 0.00 5.07
4870 5463 6.647067 CCCCTCTGTAAAGAAATATAAGAGCG 59.353 42.308 0.00 0.00 0.00 5.03
4871 5464 7.736893 TCCCCTCTGTAAAGAAATATAAGAGC 58.263 38.462 0.00 0.00 0.00 4.09
4872 5465 8.929487 ACTCCCCTCTGTAAAGAAATATAAGAG 58.071 37.037 0.00 0.00 0.00 2.85
4873 5466 8.855804 ACTCCCCTCTGTAAAGAAATATAAGA 57.144 34.615 0.00 0.00 0.00 2.10
4874 5467 9.984190 GTACTCCCCTCTGTAAAGAAATATAAG 57.016 37.037 0.00 0.00 0.00 1.73
4875 5468 9.725206 AGTACTCCCCTCTGTAAAGAAATATAA 57.275 33.333 0.00 0.00 0.00 0.98
4877 5470 9.369672 CTAGTACTCCCCTCTGTAAAGAAATAT 57.630 37.037 0.00 0.00 0.00 1.28
4878 5471 8.342270 ACTAGTACTCCCCTCTGTAAAGAAATA 58.658 37.037 0.00 0.00 0.00 1.40
4879 5472 7.190501 ACTAGTACTCCCCTCTGTAAAGAAAT 58.809 38.462 0.00 0.00 0.00 2.17
4880 5473 6.559429 ACTAGTACTCCCCTCTGTAAAGAAA 58.441 40.000 0.00 0.00 0.00 2.52
4881 5474 6.150034 ACTAGTACTCCCCTCTGTAAAGAA 57.850 41.667 0.00 0.00 0.00 2.52
4882 5475 5.793034 ACTAGTACTCCCCTCTGTAAAGA 57.207 43.478 0.00 0.00 0.00 2.52
4883 5476 6.854091 AAACTAGTACTCCCCTCTGTAAAG 57.146 41.667 0.00 0.00 0.00 1.85
4884 5477 6.375455 CGTAAACTAGTACTCCCCTCTGTAAA 59.625 42.308 0.00 0.00 0.00 2.01
4885 5478 5.882557 CGTAAACTAGTACTCCCCTCTGTAA 59.117 44.000 0.00 0.00 0.00 2.41
4886 5479 5.189736 TCGTAAACTAGTACTCCCCTCTGTA 59.810 44.000 0.00 0.00 0.00 2.74
4887 5480 4.018960 TCGTAAACTAGTACTCCCCTCTGT 60.019 45.833 0.00 0.00 0.00 3.41
4888 5481 4.335037 GTCGTAAACTAGTACTCCCCTCTG 59.665 50.000 0.00 0.00 0.00 3.35
4889 5482 4.018960 TGTCGTAAACTAGTACTCCCCTCT 60.019 45.833 0.00 0.00 0.00 3.69
4890 5483 4.265073 TGTCGTAAACTAGTACTCCCCTC 58.735 47.826 0.00 0.00 0.00 4.30
4891 5484 4.307032 TGTCGTAAACTAGTACTCCCCT 57.693 45.455 0.00 0.00 0.00 4.79
4892 5485 5.105595 ACAATGTCGTAAACTAGTACTCCCC 60.106 44.000 0.00 0.00 0.00 4.81
4893 5486 5.958955 ACAATGTCGTAAACTAGTACTCCC 58.041 41.667 0.00 0.00 0.00 4.30
4894 5487 8.970691 TTAACAATGTCGTAAACTAGTACTCC 57.029 34.615 0.00 0.00 0.00 3.85
4921 5514 7.853929 CCACATAACGCCTTTACACATAAATAC 59.146 37.037 0.00 0.00 29.85 1.89
4922 5515 7.467539 GCCACATAACGCCTTTACACATAAATA 60.468 37.037 0.00 0.00 29.85 1.40
4978 5575 1.917273 GCGCTTTGCATTCATGATGT 58.083 45.000 0.00 0.00 45.45 3.06
5060 5665 3.416156 AGAAACAGCCACAAGATTCTCC 58.584 45.455 0.00 0.00 0.00 3.71
5143 5751 2.000447 CTAGCTAACGTTTGACCCTGC 59.000 52.381 14.01 4.45 0.00 4.85
5154 5762 0.597637 CCACCGGCATCTAGCTAACG 60.598 60.000 0.00 0.00 44.79 3.18
5174 5782 1.748122 GAGCCTCCACATGCACAGG 60.748 63.158 0.00 0.00 0.00 4.00
5273 7599 4.139786 TCGCCATCTACGGAGTACTAAAT 58.860 43.478 0.00 0.00 45.11 1.40
5281 7607 0.029567 GACACTCGCCATCTACGGAG 59.970 60.000 0.00 0.00 0.00 4.63
5282 7608 1.381928 GGACACTCGCCATCTACGGA 61.382 60.000 0.00 0.00 0.00 4.69
5283 7609 1.065928 GGACACTCGCCATCTACGG 59.934 63.158 0.00 0.00 0.00 4.02
5284 7610 0.248661 CTGGACACTCGCCATCTACG 60.249 60.000 0.00 0.00 34.33 3.51
5285 7611 0.818296 ACTGGACACTCGCCATCTAC 59.182 55.000 0.00 0.00 34.33 2.59
5286 7612 1.103803 GACTGGACACTCGCCATCTA 58.896 55.000 0.00 0.00 34.33 1.98
5287 7613 0.613292 AGACTGGACACTCGCCATCT 60.613 55.000 0.00 0.00 34.33 2.90
5346 7675 5.068636 CAGGGATGATCCAGAATACAAAGG 58.931 45.833 14.36 0.00 38.64 3.11


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.