Multiple sequence alignment - TraesCS7A01G492300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G492300 chr7A 100.000 2288 0 0 1 2288 680904179 680901892 0.000000e+00 4226
1 TraesCS7A01G492300 chr7A 87.137 241 26 3 2052 2288 680914588 680914827 3.750000e-68 268
2 TraesCS7A01G492300 chr7D 94.700 1698 74 5 12 1695 98406295 98404600 0.000000e+00 2623
3 TraesCS7A01G492300 chr4D 94.281 1696 73 7 12 1693 504270344 504272029 0.000000e+00 2573
4 TraesCS7A01G492300 chr4D 93.717 1703 80 16 9 1693 466289371 466291064 0.000000e+00 2527
5 TraesCS7A01G492300 chr1D 93.941 1700 78 12 12 1698 421086749 421085062 0.000000e+00 2545
6 TraesCS7A01G492300 chr2A 93.802 1694 90 8 12 1692 165347565 165345874 0.000000e+00 2532
7 TraesCS7A01G492300 chr2A 93.533 1701 89 6 12 1695 68890350 68888654 0.000000e+00 2512
8 TraesCS7A01G492300 chr3D 93.805 1695 79 10 12 1692 479622732 479624414 0.000000e+00 2525
9 TraesCS7A01G492300 chr3A 93.310 1689 89 15 12 1693 113367058 113365387 0.000000e+00 2471
10 TraesCS7A01G492300 chr6A 93.148 1693 99 6 18 1696 479912650 479910961 0.000000e+00 2468
11 TraesCS7A01G492300 chr4A 92.992 1698 104 8 9 1692 619180426 619182122 0.000000e+00 2462
12 TraesCS7A01G492300 chr7B 84.211 323 34 6 1983 2288 664044775 664045097 4.780000e-77 298
13 TraesCS7A01G492300 chr7B 84.106 302 25 8 1989 2288 664204771 664205051 1.040000e-68 270
14 TraesCS7A01G492300 chr1A 87.179 156 7 3 1544 1687 347616937 347617091 5.060000e-37 165


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G492300 chr7A 680901892 680904179 2287 True 4226 4226 100.000 1 2288 1 chr7A.!!$R1 2287
1 TraesCS7A01G492300 chr7D 98404600 98406295 1695 True 2623 2623 94.700 12 1695 1 chr7D.!!$R1 1683
2 TraesCS7A01G492300 chr4D 504270344 504272029 1685 False 2573 2573 94.281 12 1693 1 chr4D.!!$F2 1681
3 TraesCS7A01G492300 chr4D 466289371 466291064 1693 False 2527 2527 93.717 9 1693 1 chr4D.!!$F1 1684
4 TraesCS7A01G492300 chr1D 421085062 421086749 1687 True 2545 2545 93.941 12 1698 1 chr1D.!!$R1 1686
5 TraesCS7A01G492300 chr2A 165345874 165347565 1691 True 2532 2532 93.802 12 1692 1 chr2A.!!$R2 1680
6 TraesCS7A01G492300 chr2A 68888654 68890350 1696 True 2512 2512 93.533 12 1695 1 chr2A.!!$R1 1683
7 TraesCS7A01G492300 chr3D 479622732 479624414 1682 False 2525 2525 93.805 12 1692 1 chr3D.!!$F1 1680
8 TraesCS7A01G492300 chr3A 113365387 113367058 1671 True 2471 2471 93.310 12 1693 1 chr3A.!!$R1 1681
9 TraesCS7A01G492300 chr6A 479910961 479912650 1689 True 2468 2468 93.148 18 1696 1 chr6A.!!$R1 1678
10 TraesCS7A01G492300 chr4A 619180426 619182122 1696 False 2462 2462 92.992 9 1692 1 chr4A.!!$F1 1683

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
317 321 0.179 GAGACGGCCTGATTCATGGT 59.821 55.0 0.0 0.0 0.0 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1985 2024 0.031716 CTCTCACCCCCAGATCCAGA 60.032 60.0 0.0 0.0 0.0 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 56 4.042062 TGGCCTTCTTCTTCTTCTTCATCA 59.958 41.667 3.32 0.00 0.00 3.07
63 67 3.958147 CTTCATCACCGTGCGGGCT 62.958 63.158 15.44 0.00 40.62 5.19
124 128 1.639108 TCTGCCAGGTAGGACAGACTA 59.361 52.381 4.47 0.00 42.06 2.59
131 135 1.134159 GGTAGGACAGACTAGCTCCGA 60.134 57.143 0.00 0.00 38.18 4.55
233 237 1.071299 CCCAGTACACTGCAGCACA 59.929 57.895 15.27 0.00 42.47 4.57
296 300 3.236896 TCTTCCTCTGTTTAGGGTCGTT 58.763 45.455 0.00 0.00 37.24 3.85
317 321 0.179000 GAGACGGCCTGATTCATGGT 59.821 55.000 0.00 0.00 0.00 3.55
369 374 1.361204 TCCTGGGTCAGAAATCAGCA 58.639 50.000 0.00 0.00 32.44 4.41
403 408 3.266772 TCTTTAGTGGCCTTCATGACCAT 59.733 43.478 3.32 0.56 35.53 3.55
420 425 2.936498 ACCATGACATTCGATTCGTTCC 59.064 45.455 5.89 0.00 0.00 3.62
482 487 2.550208 GGTGTTCTCGAACTTGGTCCAT 60.550 50.000 10.75 0.00 41.67 3.41
489 494 2.039746 TCGAACTTGGTCCATTCACCAT 59.960 45.455 6.13 0.00 46.21 3.55
554 559 1.893315 AGGGGTTAGCATTGGAGCTA 58.107 50.000 0.00 0.00 44.50 3.32
649 654 4.347000 GTGGGCAGGGTGAGTAAATATAGA 59.653 45.833 0.00 0.00 0.00 1.98
672 678 2.176798 GGATGGAGAGGAGGAGAAGAGA 59.823 54.545 0.00 0.00 0.00 3.10
792 798 3.283684 CCGGCCGTTGACAGCAAA 61.284 61.111 26.12 0.00 35.42 3.68
794 800 2.250939 CGGCCGTTGACAGCAAAGA 61.251 57.895 19.50 0.00 35.84 2.52
837 843 2.343758 GACGAGGTTGAGCTGCCA 59.656 61.111 0.00 0.00 0.00 4.92
863 869 0.253327 GCCGAGGAAGACCCAAAGAT 59.747 55.000 0.00 0.00 37.41 2.40
1013 1020 4.133373 CCCCATGCCCCTGGACTG 62.133 72.222 0.00 0.00 38.69 3.51
1074 1081 1.598130 GAACAACACCGGCTGCTCT 60.598 57.895 0.00 0.00 0.00 4.09
1161 1170 3.875727 CAGCCGTTCATCAGATCAAGATT 59.124 43.478 0.00 0.00 0.00 2.40
1200 1209 1.979693 GCTCCTCACTCCCGACACT 60.980 63.158 0.00 0.00 0.00 3.55
1220 1229 3.131933 ACTCTCAAGGTCATCATCTTCGG 59.868 47.826 0.00 0.00 0.00 4.30
1345 1354 3.867857 TGCTAGTTGATGGTTTATGCGA 58.132 40.909 0.00 0.00 0.00 5.10
1352 1361 6.112734 AGTTGATGGTTTATGCGATGAACTA 58.887 36.000 0.00 0.00 31.83 2.24
1412 1421 8.353684 GCTAGTTGATGCTCTGTTTATAGTCTA 58.646 37.037 0.00 0.00 0.00 2.59
1558 1570 2.294074 GCAACCAAACACCAGACAGTA 58.706 47.619 0.00 0.00 0.00 2.74
1662 1701 0.940126 GAAGTGTATGCGATGCAGGG 59.060 55.000 0.00 0.00 43.65 4.45
1664 1703 0.761187 AGTGTATGCGATGCAGGGAT 59.239 50.000 0.00 0.00 43.65 3.85
1688 1727 1.508545 CACACGGCAACCAAACACA 59.491 52.632 0.00 0.00 0.00 3.72
1698 1737 3.068873 GCAACCAAACACACCCTTATTGA 59.931 43.478 0.00 0.00 0.00 2.57
1699 1738 4.262420 GCAACCAAACACACCCTTATTGAT 60.262 41.667 0.00 0.00 0.00 2.57
1700 1739 5.741673 GCAACCAAACACACCCTTATTGATT 60.742 40.000 0.00 0.00 0.00 2.57
1701 1740 5.722021 ACCAAACACACCCTTATTGATTC 57.278 39.130 0.00 0.00 0.00 2.52
1702 1741 5.393866 ACCAAACACACCCTTATTGATTCT 58.606 37.500 0.00 0.00 0.00 2.40
1703 1742 5.838521 ACCAAACACACCCTTATTGATTCTT 59.161 36.000 0.00 0.00 0.00 2.52
1704 1743 6.015434 ACCAAACACACCCTTATTGATTCTTC 60.015 38.462 0.00 0.00 0.00 2.87
1705 1744 5.880054 AACACACCCTTATTGATTCTTCG 57.120 39.130 0.00 0.00 0.00 3.79
1706 1745 3.689649 ACACACCCTTATTGATTCTTCGC 59.310 43.478 0.00 0.00 0.00 4.70
1707 1746 2.936498 ACACCCTTATTGATTCTTCGCG 59.064 45.455 0.00 0.00 0.00 5.87
1708 1747 2.287915 CACCCTTATTGATTCTTCGCGG 59.712 50.000 6.13 0.00 0.00 6.46
1709 1748 2.169769 ACCCTTATTGATTCTTCGCGGA 59.830 45.455 6.13 0.00 0.00 5.54
1710 1749 2.802816 CCCTTATTGATTCTTCGCGGAG 59.197 50.000 8.54 8.54 0.00 4.63
1711 1750 2.802816 CCTTATTGATTCTTCGCGGAGG 59.197 50.000 15.94 0.71 0.00 4.30
1712 1751 3.458189 CTTATTGATTCTTCGCGGAGGT 58.542 45.455 15.94 3.41 0.00 3.85
1713 1752 2.403252 ATTGATTCTTCGCGGAGGTT 57.597 45.000 15.94 1.55 0.00 3.50
1714 1753 1.438651 TTGATTCTTCGCGGAGGTTG 58.561 50.000 15.94 0.00 0.00 3.77
1715 1754 0.391130 TGATTCTTCGCGGAGGTTGG 60.391 55.000 15.94 0.00 0.00 3.77
1716 1755 1.706287 GATTCTTCGCGGAGGTTGGC 61.706 60.000 15.94 0.00 0.00 4.52
1717 1756 2.185310 ATTCTTCGCGGAGGTTGGCT 62.185 55.000 15.94 0.00 0.00 4.75
1718 1757 2.781595 TTCTTCGCGGAGGTTGGCTC 62.782 60.000 15.94 0.00 0.00 4.70
1719 1758 4.388499 TTCGCGGAGGTTGGCTCC 62.388 66.667 6.13 0.00 37.62 4.70
1721 1760 4.394712 CGCGGAGGTTGGCTCCTT 62.395 66.667 0.00 0.00 38.02 3.36
1722 1761 2.987125 GCGGAGGTTGGCTCCTTA 59.013 61.111 0.00 0.00 38.02 2.69
1723 1762 1.153349 GCGGAGGTTGGCTCCTTAG 60.153 63.158 0.00 3.08 38.02 2.18
1724 1763 1.522569 CGGAGGTTGGCTCCTTAGG 59.477 63.158 0.00 0.00 38.02 2.69
1725 1764 1.265454 CGGAGGTTGGCTCCTTAGGT 61.265 60.000 0.00 0.00 38.02 3.08
1726 1765 1.875488 GGAGGTTGGCTCCTTAGGTA 58.125 55.000 0.00 0.00 38.02 3.08
1727 1766 2.193993 GGAGGTTGGCTCCTTAGGTAA 58.806 52.381 0.00 0.00 38.02 2.85
1728 1767 2.778270 GGAGGTTGGCTCCTTAGGTAAT 59.222 50.000 0.00 0.00 38.02 1.89
1729 1768 3.181453 GGAGGTTGGCTCCTTAGGTAATC 60.181 52.174 0.00 0.00 38.02 1.75
1730 1769 2.434702 AGGTTGGCTCCTTAGGTAATCG 59.565 50.000 0.00 0.00 33.52 3.34
1731 1770 2.210961 GTTGGCTCCTTAGGTAATCGC 58.789 52.381 0.00 0.00 0.00 4.58
1732 1771 1.491668 TGGCTCCTTAGGTAATCGCA 58.508 50.000 0.00 0.00 0.00 5.10
1733 1772 2.047061 TGGCTCCTTAGGTAATCGCAT 58.953 47.619 0.00 0.00 0.00 4.73
1734 1773 2.438021 TGGCTCCTTAGGTAATCGCATT 59.562 45.455 0.00 0.00 0.00 3.56
1735 1774 3.118038 TGGCTCCTTAGGTAATCGCATTT 60.118 43.478 0.00 0.00 0.00 2.32
1736 1775 3.251004 GGCTCCTTAGGTAATCGCATTTG 59.749 47.826 0.00 0.00 0.00 2.32
1737 1776 3.304057 GCTCCTTAGGTAATCGCATTTGC 60.304 47.826 0.00 0.00 37.78 3.68
1738 1777 3.876914 CTCCTTAGGTAATCGCATTTGCA 59.123 43.478 0.00 0.00 42.21 4.08
1739 1778 4.460263 TCCTTAGGTAATCGCATTTGCAT 58.540 39.130 0.00 0.00 42.21 3.96
1740 1779 4.275689 TCCTTAGGTAATCGCATTTGCATG 59.724 41.667 0.00 0.00 42.21 4.06
1741 1780 4.036734 CCTTAGGTAATCGCATTTGCATGT 59.963 41.667 3.13 0.00 42.21 3.21
1742 1781 3.425577 AGGTAATCGCATTTGCATGTG 57.574 42.857 3.13 0.00 41.63 3.21
1743 1782 1.854126 GGTAATCGCATTTGCATGTGC 59.146 47.619 12.41 12.41 40.28 4.57
1744 1783 2.480073 GGTAATCGCATTTGCATGTGCT 60.480 45.455 18.13 5.98 40.28 4.40
1745 1784 2.373540 AATCGCATTTGCATGTGCTT 57.626 40.000 18.13 3.72 40.28 3.91
1746 1785 1.917273 ATCGCATTTGCATGTGCTTC 58.083 45.000 18.13 0.00 40.28 3.86
1747 1786 0.109179 TCGCATTTGCATGTGCTTCC 60.109 50.000 18.13 0.00 40.28 3.46
1748 1787 0.388778 CGCATTTGCATGTGCTTCCA 60.389 50.000 18.13 0.00 42.21 3.53
1749 1788 1.737696 CGCATTTGCATGTGCTTCCAT 60.738 47.619 18.13 0.00 42.21 3.41
1750 1789 1.663643 GCATTTGCATGTGCTTCCATG 59.336 47.619 14.53 7.08 44.07 3.66
1751 1790 2.276201 CATTTGCATGTGCTTCCATGG 58.724 47.619 4.97 4.97 42.01 3.66
1752 1791 0.609151 TTTGCATGTGCTTCCATGGG 59.391 50.000 13.02 0.00 42.01 4.00
1753 1792 1.890625 TTGCATGTGCTTCCATGGGC 61.891 55.000 13.02 9.12 42.01 5.36
1754 1793 3.085119 GCATGTGCTTCCATGGGCC 62.085 63.158 13.02 0.00 42.01 5.80
1755 1794 2.440796 ATGTGCTTCCATGGGCCG 60.441 61.111 13.02 1.52 0.00 6.13
1756 1795 2.982643 ATGTGCTTCCATGGGCCGA 61.983 57.895 13.02 0.00 0.00 5.54
1757 1796 3.134127 GTGCTTCCATGGGCCGAC 61.134 66.667 13.02 0.00 0.00 4.79
1758 1797 4.776322 TGCTTCCATGGGCCGACG 62.776 66.667 13.02 0.00 0.00 5.12
1760 1799 4.776322 CTTCCATGGGCCGACGCA 62.776 66.667 13.02 0.00 43.66 5.24
1768 1807 3.641986 GGCCGACGCACACGAAAA 61.642 61.111 0.00 0.00 43.93 2.29
1769 1808 2.554272 GCCGACGCACACGAAAAT 59.446 55.556 0.00 0.00 43.93 1.82
1770 1809 1.628447 GGCCGACGCACACGAAAATA 61.628 55.000 0.00 0.00 43.93 1.40
1771 1810 0.164217 GCCGACGCACACGAAAATAA 59.836 50.000 0.00 0.00 43.93 1.40
1772 1811 1.201987 GCCGACGCACACGAAAATAAT 60.202 47.619 0.00 0.00 43.93 1.28
1773 1812 2.029486 GCCGACGCACACGAAAATAATA 59.971 45.455 0.00 0.00 43.93 0.98
1774 1813 3.302870 GCCGACGCACACGAAAATAATAT 60.303 43.478 0.00 0.00 43.93 1.28
1775 1814 4.784079 GCCGACGCACACGAAAATAATATT 60.784 41.667 0.00 0.00 43.93 1.28
1776 1815 5.260140 CCGACGCACACGAAAATAATATTT 58.740 37.500 0.00 0.00 43.93 1.40
1777 1816 5.735427 CCGACGCACACGAAAATAATATTTT 59.265 36.000 10.43 10.43 43.93 1.82
1778 1817 6.249682 CCGACGCACACGAAAATAATATTTTT 59.750 34.615 11.73 0.00 43.93 1.94
1779 1818 7.425882 CCGACGCACACGAAAATAATATTTTTA 59.574 33.333 11.73 0.00 43.93 1.52
1780 1819 8.939926 CGACGCACACGAAAATAATATTTTTAT 58.060 29.630 11.73 1.96 43.93 1.40
1782 1821 9.015577 ACGCACACGAAAATAATATTTTTATGG 57.984 29.630 11.73 8.64 43.93 2.74
1783 1822 8.476142 CGCACACGAAAATAATATTTTTATGGG 58.524 33.333 11.73 13.80 43.93 4.00
1784 1823 8.272866 GCACACGAAAATAATATTTTTATGGGC 58.727 33.333 22.58 22.58 37.18 5.36
1785 1824 8.760569 CACACGAAAATAATATTTTTATGGGCC 58.239 33.333 11.73 0.00 0.00 5.80
1786 1825 8.478877 ACACGAAAATAATATTTTTATGGGCCA 58.521 29.630 9.61 9.61 0.00 5.36
1787 1826 8.760569 CACGAAAATAATATTTTTATGGGCCAC 58.239 33.333 9.28 0.00 0.00 5.01
1788 1827 8.478877 ACGAAAATAATATTTTTATGGGCCACA 58.521 29.630 9.28 0.00 0.00 4.17
1789 1828 8.760569 CGAAAATAATATTTTTATGGGCCACAC 58.239 33.333 9.28 0.00 0.00 3.82
1790 1829 8.655651 AAAATAATATTTTTATGGGCCACACG 57.344 30.769 9.28 0.00 0.00 4.49
1791 1830 7.589958 AATAATATTTTTATGGGCCACACGA 57.410 32.000 9.28 0.00 0.00 4.35
1792 1831 4.911514 ATATTTTTATGGGCCACACGAC 57.088 40.909 9.28 0.00 0.00 4.34
1793 1832 1.982660 TTTTTATGGGCCACACGACA 58.017 45.000 9.28 0.00 0.00 4.35
1794 1833 1.982660 TTTTATGGGCCACACGACAA 58.017 45.000 9.28 0.00 0.00 3.18
1795 1834 2.208132 TTTATGGGCCACACGACAAT 57.792 45.000 9.28 0.00 0.00 2.71
1796 1835 3.351794 TTTATGGGCCACACGACAATA 57.648 42.857 9.28 0.00 0.00 1.90
1797 1836 3.351794 TTATGGGCCACACGACAATAA 57.648 42.857 9.28 0.00 0.00 1.40
1798 1837 2.435372 ATGGGCCACACGACAATAAT 57.565 45.000 9.28 0.00 0.00 1.28
1799 1838 2.208132 TGGGCCACACGACAATAATT 57.792 45.000 0.00 0.00 0.00 1.40
1800 1839 1.815613 TGGGCCACACGACAATAATTG 59.184 47.619 0.00 0.00 0.00 2.32
1801 1840 2.088423 GGGCCACACGACAATAATTGA 58.912 47.619 4.39 0.00 0.00 2.57
1802 1841 2.687935 GGGCCACACGACAATAATTGAT 59.312 45.455 4.39 0.00 0.00 2.57
1803 1842 3.489059 GGGCCACACGACAATAATTGATG 60.489 47.826 4.39 0.00 0.00 3.07
1804 1843 3.376859 GGCCACACGACAATAATTGATGA 59.623 43.478 0.00 0.00 0.00 2.92
1805 1844 4.496341 GGCCACACGACAATAATTGATGAG 60.496 45.833 0.00 0.00 0.00 2.90
1806 1845 4.332543 GCCACACGACAATAATTGATGAGA 59.667 41.667 0.00 0.00 0.00 3.27
1807 1846 5.163764 GCCACACGACAATAATTGATGAGAA 60.164 40.000 0.00 0.00 0.00 2.87
1808 1847 6.458751 GCCACACGACAATAATTGATGAGAAT 60.459 38.462 0.00 0.00 0.00 2.40
1809 1848 7.254761 GCCACACGACAATAATTGATGAGAATA 60.255 37.037 0.00 0.00 0.00 1.75
1810 1849 8.278408 CCACACGACAATAATTGATGAGAATAG 58.722 37.037 0.00 0.00 0.00 1.73
1811 1850 9.034544 CACACGACAATAATTGATGAGAATAGA 57.965 33.333 0.00 0.00 0.00 1.98
1812 1851 9.254133 ACACGACAATAATTGATGAGAATAGAG 57.746 33.333 0.00 0.00 0.00 2.43
1813 1852 8.219769 CACGACAATAATTGATGAGAATAGAGC 58.780 37.037 0.00 0.00 0.00 4.09
1814 1853 8.147058 ACGACAATAATTGATGAGAATAGAGCT 58.853 33.333 0.00 0.00 0.00 4.09
1815 1854 8.433893 CGACAATAATTGATGAGAATAGAGCTG 58.566 37.037 0.00 0.00 0.00 4.24
1816 1855 9.270640 GACAATAATTGATGAGAATAGAGCTGT 57.729 33.333 0.00 0.00 0.00 4.40
1817 1856 9.270640 ACAATAATTGATGAGAATAGAGCTGTC 57.729 33.333 0.00 0.00 0.00 3.51
1818 1857 8.433893 CAATAATTGATGAGAATAGAGCTGTCG 58.566 37.037 0.00 0.00 0.00 4.35
1819 1858 3.998099 TGATGAGAATAGAGCTGTCGG 57.002 47.619 0.00 0.00 0.00 4.79
1820 1859 3.291584 TGATGAGAATAGAGCTGTCGGT 58.708 45.455 0.00 0.00 0.00 4.69
1821 1860 3.316588 TGATGAGAATAGAGCTGTCGGTC 59.683 47.826 0.00 0.00 37.92 4.79
1822 1861 2.025155 TGAGAATAGAGCTGTCGGTCC 58.975 52.381 0.00 0.00 38.41 4.46
1823 1862 2.303175 GAGAATAGAGCTGTCGGTCCT 58.697 52.381 0.00 0.00 38.41 3.85
1824 1863 2.028130 AGAATAGAGCTGTCGGTCCTG 58.972 52.381 0.00 0.00 38.41 3.86
1825 1864 1.067821 GAATAGAGCTGTCGGTCCTGG 59.932 57.143 0.00 0.00 38.41 4.45
1826 1865 0.757188 ATAGAGCTGTCGGTCCTGGG 60.757 60.000 0.00 0.00 38.41 4.45
1827 1866 4.459089 GAGCTGTCGGTCCTGGGC 62.459 72.222 0.00 0.00 0.00 5.36
1830 1869 3.322466 CTGTCGGTCCTGGGCCTT 61.322 66.667 16.65 0.00 0.00 4.35
1831 1870 3.612247 CTGTCGGTCCTGGGCCTTG 62.612 68.421 16.65 0.09 0.00 3.61
1832 1871 3.637273 GTCGGTCCTGGGCCTTGT 61.637 66.667 16.65 0.00 0.00 3.16
1833 1872 2.852075 TCGGTCCTGGGCCTTGTT 60.852 61.111 16.65 0.00 0.00 2.83
1834 1873 2.359975 CGGTCCTGGGCCTTGTTC 60.360 66.667 16.65 0.00 0.00 3.18
1835 1874 2.035783 GGTCCTGGGCCTTGTTCC 59.964 66.667 10.89 0.00 0.00 3.62
1836 1875 2.539081 GGTCCTGGGCCTTGTTCCT 61.539 63.158 10.89 0.00 0.00 3.36
1837 1876 1.460699 GTCCTGGGCCTTGTTCCTT 59.539 57.895 4.53 0.00 0.00 3.36
1838 1877 0.895559 GTCCTGGGCCTTGTTCCTTG 60.896 60.000 4.53 0.00 0.00 3.61
1839 1878 1.153756 CCTGGGCCTTGTTCCTTGT 59.846 57.895 4.53 0.00 0.00 3.16
1840 1879 0.895559 CCTGGGCCTTGTTCCTTGTC 60.896 60.000 4.53 0.00 0.00 3.18
1841 1880 0.895559 CTGGGCCTTGTTCCTTGTCC 60.896 60.000 4.53 0.00 0.00 4.02
1842 1881 1.152830 GGGCCTTGTTCCTTGTCCA 59.847 57.895 0.84 0.00 0.00 4.02
1843 1882 0.469144 GGGCCTTGTTCCTTGTCCAA 60.469 55.000 0.84 0.00 0.00 3.53
1844 1883 0.673985 GGCCTTGTTCCTTGTCCAAC 59.326 55.000 0.00 0.00 0.00 3.77
1845 1884 0.673985 GCCTTGTTCCTTGTCCAACC 59.326 55.000 0.00 0.00 0.00 3.77
1846 1885 1.328279 CCTTGTTCCTTGTCCAACCC 58.672 55.000 0.00 0.00 0.00 4.11
1847 1886 0.951558 CTTGTTCCTTGTCCAACCCG 59.048 55.000 0.00 0.00 0.00 5.28
1848 1887 0.466555 TTGTTCCTTGTCCAACCCGG 60.467 55.000 0.00 0.00 0.00 5.73
1849 1888 1.346479 TGTTCCTTGTCCAACCCGGA 61.346 55.000 0.73 0.00 43.61 5.14
1856 1895 4.225860 TCCAACCCGGACATGACT 57.774 55.556 0.73 0.00 39.64 3.41
1857 1896 2.458892 TCCAACCCGGACATGACTT 58.541 52.632 0.73 0.00 39.64 3.01
1858 1897 0.036164 TCCAACCCGGACATGACTTG 59.964 55.000 0.73 0.00 39.64 3.16
1859 1898 0.250727 CCAACCCGGACATGACTTGT 60.251 55.000 0.73 0.00 42.79 3.16
1872 1911 1.682982 GACTTGTCAGTCCACGTACG 58.317 55.000 15.01 15.01 43.50 3.67
1873 1912 0.313043 ACTTGTCAGTCCACGTACGG 59.687 55.000 21.06 8.46 0.00 4.02
1874 1913 0.388134 CTTGTCAGTCCACGTACGGG 60.388 60.000 21.06 16.64 0.00 5.28
1875 1914 0.822944 TTGTCAGTCCACGTACGGGA 60.823 55.000 21.47 19.38 0.00 5.14
1876 1915 1.239296 TGTCAGTCCACGTACGGGAG 61.239 60.000 21.47 9.50 34.44 4.30
1877 1916 1.676635 TCAGTCCACGTACGGGAGG 60.677 63.158 21.47 17.57 34.44 4.30
1878 1917 1.676635 CAGTCCACGTACGGGAGGA 60.677 63.158 21.47 19.64 34.44 3.71
1879 1918 2.880648 GTCCACGTACGGGAGGAC 59.119 66.667 28.51 28.51 43.18 3.85
1880 1919 1.973281 GTCCACGTACGGGAGGACA 60.973 63.158 33.07 13.48 46.78 4.02
1881 1920 1.000521 TCCACGTACGGGAGGACAT 60.001 57.895 21.47 0.00 46.78 3.06
1882 1921 1.141019 CCACGTACGGGAGGACATG 59.859 63.158 21.47 5.10 46.78 3.21
1883 1922 1.601419 CCACGTACGGGAGGACATGT 61.601 60.000 21.47 0.00 46.78 3.21
1884 1923 1.097232 CACGTACGGGAGGACATGTA 58.903 55.000 21.06 0.00 46.78 2.29
1885 1924 1.679680 CACGTACGGGAGGACATGTAT 59.320 52.381 21.06 0.00 46.78 2.29
1886 1925 1.952296 ACGTACGGGAGGACATGTATC 59.048 52.381 21.06 0.00 46.78 2.24
1887 1926 2.228059 CGTACGGGAGGACATGTATCT 58.772 52.381 7.57 0.00 46.78 1.98
1888 1927 3.181451 ACGTACGGGAGGACATGTATCTA 60.181 47.826 21.06 0.00 46.78 1.98
1889 1928 4.008330 CGTACGGGAGGACATGTATCTAT 58.992 47.826 7.57 0.00 46.78 1.98
1890 1929 4.094590 CGTACGGGAGGACATGTATCTATC 59.905 50.000 7.57 0.00 46.78 2.08
1891 1930 4.390129 ACGGGAGGACATGTATCTATCT 57.610 45.455 0.00 0.00 0.00 1.98
1892 1931 5.516059 ACGGGAGGACATGTATCTATCTA 57.484 43.478 0.00 0.00 0.00 1.98
1893 1932 6.080969 ACGGGAGGACATGTATCTATCTAT 57.919 41.667 0.00 0.00 0.00 1.98
1894 1933 6.123651 ACGGGAGGACATGTATCTATCTATC 58.876 44.000 0.00 0.00 0.00 2.08
1895 1934 6.069323 ACGGGAGGACATGTATCTATCTATCT 60.069 42.308 0.00 0.00 0.00 1.98
1896 1935 7.127493 ACGGGAGGACATGTATCTATCTATCTA 59.873 40.741 0.00 0.00 0.00 1.98
1897 1936 8.160765 CGGGAGGACATGTATCTATCTATCTAT 58.839 40.741 0.00 0.00 0.00 1.98
1898 1937 9.515226 GGGAGGACATGTATCTATCTATCTATC 57.485 40.741 0.00 0.00 0.00 2.08
1921 1960 8.897457 ATCTATAAATCTACAACGTATGAGCG 57.103 34.615 0.00 0.00 37.94 5.03
1922 1961 8.091385 TCTATAAATCTACAACGTATGAGCGA 57.909 34.615 0.00 0.00 35.59 4.93
1923 1962 8.228464 TCTATAAATCTACAACGTATGAGCGAG 58.772 37.037 0.00 0.00 35.59 5.03
1924 1963 4.634184 AATCTACAACGTATGAGCGAGT 57.366 40.909 0.00 0.00 35.59 4.18
1925 1964 4.634184 ATCTACAACGTATGAGCGAGTT 57.366 40.909 0.00 0.00 35.59 3.01
1926 1965 5.746307 ATCTACAACGTATGAGCGAGTTA 57.254 39.130 0.00 0.00 35.59 2.24
1927 1966 5.746307 TCTACAACGTATGAGCGAGTTAT 57.254 39.130 0.00 0.00 35.59 1.89
1928 1967 6.849588 TCTACAACGTATGAGCGAGTTATA 57.150 37.500 0.00 0.00 35.59 0.98
1929 1968 7.430992 TCTACAACGTATGAGCGAGTTATAT 57.569 36.000 0.00 0.00 35.59 0.86
1930 1969 8.538409 TCTACAACGTATGAGCGAGTTATATA 57.462 34.615 0.00 0.00 35.59 0.86
1931 1970 8.992073 TCTACAACGTATGAGCGAGTTATATAA 58.008 33.333 0.00 0.00 35.59 0.98
1932 1971 9.603298 CTACAACGTATGAGCGAGTTATATAAA 57.397 33.333 0.00 0.00 35.59 1.40
1933 1972 8.861033 ACAACGTATGAGCGAGTTATATAAAA 57.139 30.769 0.00 0.00 35.59 1.52
1934 1973 9.304731 ACAACGTATGAGCGAGTTATATAAAAA 57.695 29.630 0.00 0.00 35.59 1.94
1952 1991 2.833631 AAAGGAAACGACAGATCCGT 57.166 45.000 0.00 0.00 42.61 4.69
1953 1992 2.080286 AAGGAAACGACAGATCCGTG 57.920 50.000 0.00 0.00 40.44 4.94
1954 1993 1.254026 AGGAAACGACAGATCCGTGA 58.746 50.000 0.00 0.00 40.44 4.35
1955 1994 1.202582 AGGAAACGACAGATCCGTGAG 59.797 52.381 0.00 0.00 40.44 3.51
1956 1995 0.992802 GAAACGACAGATCCGTGAGC 59.007 55.000 0.00 0.00 40.44 4.26
1957 1996 0.389948 AAACGACAGATCCGTGAGCC 60.390 55.000 0.00 0.00 40.44 4.70
1958 1997 2.278206 CGACAGATCCGTGAGCCG 60.278 66.667 0.00 0.00 0.00 5.52
1967 2006 2.434884 CGTGAGCCGGTGAAGCAT 60.435 61.111 1.90 0.00 0.00 3.79
1968 2007 2.743752 CGTGAGCCGGTGAAGCATG 61.744 63.158 1.90 0.00 0.00 4.06
1969 2008 2.046023 TGAGCCGGTGAAGCATGG 60.046 61.111 1.90 0.00 0.00 3.66
1970 2009 2.825836 GAGCCGGTGAAGCATGGG 60.826 66.667 1.90 0.00 0.00 4.00
1973 2012 4.738998 CCGGTGAAGCATGGGCCA 62.739 66.667 9.61 9.61 42.56 5.36
1974 2013 3.443045 CGGTGAAGCATGGGCCAC 61.443 66.667 9.28 0.00 42.56 5.01
1975 2014 2.283101 GGTGAAGCATGGGCCACA 60.283 61.111 9.28 0.00 42.56 4.17
1976 2015 1.683365 GGTGAAGCATGGGCCACAT 60.683 57.895 9.28 2.47 42.56 3.21
1977 2016 0.395586 GGTGAAGCATGGGCCACATA 60.396 55.000 9.28 0.00 42.56 2.29
1978 2017 1.696063 GTGAAGCATGGGCCACATAT 58.304 50.000 9.28 0.00 42.56 1.78
1979 2018 2.488891 GGTGAAGCATGGGCCACATATA 60.489 50.000 9.28 0.00 42.56 0.86
1980 2019 2.554032 GTGAAGCATGGGCCACATATAC 59.446 50.000 9.28 0.02 42.56 1.47
1981 2020 2.442878 TGAAGCATGGGCCACATATACT 59.557 45.455 9.28 0.00 42.56 2.12
1982 2021 2.867109 AGCATGGGCCACATATACTC 57.133 50.000 9.28 0.00 42.56 2.59
1983 2022 1.002430 AGCATGGGCCACATATACTCG 59.998 52.381 9.28 0.00 42.56 4.18
1984 2023 1.001974 GCATGGGCCACATATACTCGA 59.998 52.381 9.28 0.00 37.84 4.04
1985 2024 2.355108 GCATGGGCCACATATACTCGAT 60.355 50.000 9.28 0.00 37.84 3.59
1986 2025 3.525537 CATGGGCCACATATACTCGATC 58.474 50.000 9.28 0.00 37.84 3.69
1987 2026 2.889512 TGGGCCACATATACTCGATCT 58.110 47.619 0.00 0.00 0.00 2.75
1988 2027 2.562738 TGGGCCACATATACTCGATCTG 59.437 50.000 0.00 0.00 0.00 2.90
1989 2028 2.093973 GGGCCACATATACTCGATCTGG 60.094 54.545 4.39 0.00 0.00 3.86
1990 2029 2.826128 GGCCACATATACTCGATCTGGA 59.174 50.000 0.00 0.00 0.00 3.86
1991 2030 3.449018 GGCCACATATACTCGATCTGGAT 59.551 47.826 0.00 0.00 0.00 3.41
1992 2031 4.440802 GGCCACATATACTCGATCTGGATC 60.441 50.000 0.00 0.83 34.56 3.36
1993 2032 4.400884 GCCACATATACTCGATCTGGATCT 59.599 45.833 8.65 0.00 35.72 2.75
1994 2033 5.678361 GCCACATATACTCGATCTGGATCTG 60.678 48.000 8.65 4.59 35.72 2.90
1995 2034 5.163571 CCACATATACTCGATCTGGATCTGG 60.164 48.000 8.65 3.15 35.72 3.86
1996 2035 4.952957 ACATATACTCGATCTGGATCTGGG 59.047 45.833 8.65 5.29 35.72 4.45
1997 2036 2.294449 TACTCGATCTGGATCTGGGG 57.706 55.000 8.65 0.00 35.72 4.96
1998 2037 0.470833 ACTCGATCTGGATCTGGGGG 60.471 60.000 8.65 0.00 35.72 5.40
1999 2038 0.470833 CTCGATCTGGATCTGGGGGT 60.471 60.000 8.65 0.00 35.72 4.95
2000 2039 0.760567 TCGATCTGGATCTGGGGGTG 60.761 60.000 8.65 0.00 35.72 4.61
2001 2040 0.760567 CGATCTGGATCTGGGGGTGA 60.761 60.000 8.65 0.00 35.72 4.02
2002 2041 1.055040 GATCTGGATCTGGGGGTGAG 58.945 60.000 3.58 0.00 35.04 3.51
2003 2042 0.644380 ATCTGGATCTGGGGGTGAGA 59.356 55.000 0.00 0.00 0.00 3.27
2004 2043 0.031716 TCTGGATCTGGGGGTGAGAG 60.032 60.000 0.00 0.00 0.00 3.20
2005 2044 1.003442 TGGATCTGGGGGTGAGAGG 59.997 63.158 0.00 0.00 0.00 3.69
2006 2045 2.447714 GGATCTGGGGGTGAGAGGC 61.448 68.421 0.00 0.00 0.00 4.70
2007 2046 2.765807 ATCTGGGGGTGAGAGGCG 60.766 66.667 0.00 0.00 0.00 5.52
2014 2053 4.864334 GGTGAGAGGCGCCATGGG 62.864 72.222 31.54 4.77 46.72 4.00
2015 2054 4.864334 GTGAGAGGCGCCATGGGG 62.864 72.222 31.54 23.98 37.18 4.96
2017 2056 3.564218 GAGAGGCGCCATGGGGAT 61.564 66.667 31.50 18.80 35.59 3.85
2018 2057 3.543536 GAGAGGCGCCATGGGGATC 62.544 68.421 31.50 25.12 35.59 3.36
2019 2058 3.877450 GAGGCGCCATGGGGATCA 61.877 66.667 31.50 0.00 35.59 2.92
2020 2059 3.419580 AGGCGCCATGGGGATCAA 61.420 61.111 31.50 0.00 35.59 2.57
2021 2060 2.908940 GGCGCCATGGGGATCAAG 60.909 66.667 31.50 0.00 35.59 3.02
2022 2061 3.599704 GCGCCATGGGGATCAAGC 61.600 66.667 31.50 9.44 35.59 4.01
2023 2062 2.908940 CGCCATGGGGATCAAGCC 60.909 66.667 23.98 0.00 35.59 4.35
2024 2063 2.908940 GCCATGGGGATCAAGCCG 60.909 66.667 15.13 0.00 35.59 5.52
2025 2064 2.597340 CCATGGGGATCAAGCCGT 59.403 61.111 2.85 0.00 35.59 5.68
2026 2065 1.526917 CCATGGGGATCAAGCCGTC 60.527 63.158 2.85 0.00 35.59 4.79
2027 2066 1.526917 CATGGGGATCAAGCCGTCC 60.527 63.158 0.00 0.00 0.00 4.79
2028 2067 1.694169 ATGGGGATCAAGCCGTCCT 60.694 57.895 0.00 0.00 34.84 3.85
2029 2068 1.700042 ATGGGGATCAAGCCGTCCTC 61.700 60.000 0.00 0.00 35.46 3.71
2030 2069 2.367202 GGGGATCAAGCCGTCCTCA 61.367 63.158 0.00 0.00 34.99 3.86
2031 2070 1.700042 GGGGATCAAGCCGTCCTCAT 61.700 60.000 0.00 0.00 34.99 2.90
2032 2071 0.181350 GGGATCAAGCCGTCCTCATT 59.819 55.000 0.00 0.00 34.84 2.57
2033 2072 1.416401 GGGATCAAGCCGTCCTCATTA 59.584 52.381 0.00 0.00 34.84 1.90
2034 2073 2.039084 GGGATCAAGCCGTCCTCATTAT 59.961 50.000 0.00 0.00 34.84 1.28
2035 2074 3.070018 GGATCAAGCCGTCCTCATTATG 58.930 50.000 0.00 0.00 0.00 1.90
2036 2075 3.244215 GGATCAAGCCGTCCTCATTATGA 60.244 47.826 0.00 0.00 0.00 2.15
2037 2076 3.179443 TCAAGCCGTCCTCATTATGAC 57.821 47.619 0.00 0.00 0.00 3.06
2038 2077 2.158957 TCAAGCCGTCCTCATTATGACC 60.159 50.000 0.00 0.00 0.00 4.02
2039 2078 0.759346 AGCCGTCCTCATTATGACCC 59.241 55.000 0.00 0.00 0.00 4.46
2040 2079 0.250338 GCCGTCCTCATTATGACCCC 60.250 60.000 0.00 0.00 0.00 4.95
2041 2080 0.396811 CCGTCCTCATTATGACCCCC 59.603 60.000 0.00 0.00 0.00 5.40
2042 2081 1.128200 CGTCCTCATTATGACCCCCA 58.872 55.000 0.00 0.00 0.00 4.96
2043 2082 1.699634 CGTCCTCATTATGACCCCCAT 59.300 52.381 0.00 0.00 39.25 4.00
2044 2083 2.550855 CGTCCTCATTATGACCCCCATG 60.551 54.545 0.00 0.00 36.71 3.66
2045 2084 2.065007 TCCTCATTATGACCCCCATGG 58.935 52.381 4.14 4.14 36.71 3.66
2046 2085 2.065007 CCTCATTATGACCCCCATGGA 58.935 52.381 15.22 0.00 36.71 3.41
2047 2086 2.040813 CCTCATTATGACCCCCATGGAG 59.959 54.545 15.22 6.77 36.71 3.86
2048 2087 1.425066 TCATTATGACCCCCATGGAGC 59.575 52.381 15.22 0.00 36.71 4.70
2049 2088 1.426598 CATTATGACCCCCATGGAGCT 59.573 52.381 15.22 0.00 36.71 4.09
2050 2089 1.140312 TTATGACCCCCATGGAGCTC 58.860 55.000 15.22 4.71 36.71 4.09
2051 2090 1.121407 TATGACCCCCATGGAGCTCG 61.121 60.000 15.22 0.00 36.71 5.03
2052 2091 4.554036 GACCCCCATGGAGCTCGC 62.554 72.222 15.22 1.18 38.00 5.03
2093 2132 3.691342 CCCCCTGTCGCGACTGAA 61.691 66.667 37.69 20.47 32.81 3.02
2094 2133 2.125912 CCCCTGTCGCGACTGAAG 60.126 66.667 37.69 28.71 32.81 3.02
2095 2134 2.125912 CCCTGTCGCGACTGAAGG 60.126 66.667 37.69 32.87 32.81 3.46
2096 2135 2.811317 CCTGTCGCGACTGAAGGC 60.811 66.667 37.69 14.87 32.81 4.35
2103 2142 4.735132 CGACTGAAGGCGGCGGAA 62.735 66.667 9.78 0.00 0.00 4.30
2104 2143 3.119096 GACTGAAGGCGGCGGAAC 61.119 66.667 9.78 0.00 0.00 3.62
2105 2144 3.591254 GACTGAAGGCGGCGGAACT 62.591 63.158 9.78 0.00 0.00 3.01
2106 2145 2.815647 CTGAAGGCGGCGGAACTC 60.816 66.667 9.78 0.00 0.00 3.01
2107 2146 4.388499 TGAAGGCGGCGGAACTCC 62.388 66.667 9.78 0.00 0.00 3.85
2117 2156 4.452733 GGAACTCCCGTCCGGCTG 62.453 72.222 0.00 0.00 0.00 4.85
2154 2193 3.123674 GACATCTGTCGTGGGTGTC 57.876 57.895 0.00 0.00 35.12 3.67
2155 2194 0.732880 GACATCTGTCGTGGGTGTCG 60.733 60.000 0.00 0.00 35.12 4.35
2156 2195 1.446099 CATCTGTCGTGGGTGTCGG 60.446 63.158 0.00 0.00 0.00 4.79
2157 2196 1.906824 ATCTGTCGTGGGTGTCGGT 60.907 57.895 0.00 0.00 0.00 4.69
2158 2197 2.154798 ATCTGTCGTGGGTGTCGGTG 62.155 60.000 0.00 0.00 0.00 4.94
2159 2198 2.834043 TGTCGTGGGTGTCGGTGA 60.834 61.111 0.00 0.00 0.00 4.02
2160 2199 2.358193 CTGTCGTGGGTGTCGGTGAA 62.358 60.000 0.00 0.00 0.00 3.18
2161 2200 1.663702 GTCGTGGGTGTCGGTGAAG 60.664 63.158 0.00 0.00 0.00 3.02
2162 2201 2.129146 TCGTGGGTGTCGGTGAAGT 61.129 57.895 0.00 0.00 0.00 3.01
2163 2202 1.663702 CGTGGGTGTCGGTGAAGTC 60.664 63.158 0.00 0.00 0.00 3.01
2164 2203 1.663702 GTGGGTGTCGGTGAAGTCG 60.664 63.158 0.00 0.00 0.00 4.18
2165 2204 2.048503 GGGTGTCGGTGAAGTCGG 60.049 66.667 0.00 0.00 0.00 4.79
2166 2205 2.737376 GGTGTCGGTGAAGTCGGC 60.737 66.667 0.00 0.00 0.00 5.54
2167 2206 3.103911 GTGTCGGTGAAGTCGGCG 61.104 66.667 0.00 0.00 34.67 6.46
2168 2207 3.598715 TGTCGGTGAAGTCGGCGT 61.599 61.111 6.85 0.00 34.67 5.68
2169 2208 3.103911 GTCGGTGAAGTCGGCGTG 61.104 66.667 6.85 0.00 0.00 5.34
2181 2220 2.178273 GGCGTGCCGGTTCAAATC 59.822 61.111 1.90 0.00 0.00 2.17
2182 2221 2.178273 GCGTGCCGGTTCAAATCC 59.822 61.111 1.90 0.00 0.00 3.01
2183 2222 2.478746 CGTGCCGGTTCAAATCCG 59.521 61.111 1.90 0.00 46.49 4.18
2184 2223 2.322081 CGTGCCGGTTCAAATCCGT 61.322 57.895 1.90 0.00 45.63 4.69
2185 2224 1.209127 GTGCCGGTTCAAATCCGTG 59.791 57.895 1.90 0.00 45.63 4.94
2186 2225 1.228003 TGCCGGTTCAAATCCGTGT 60.228 52.632 1.90 0.00 45.63 4.49
2187 2226 1.209127 GCCGGTTCAAATCCGTGTG 59.791 57.895 1.90 0.00 45.63 3.82
2188 2227 1.209127 CCGGTTCAAATCCGTGTGC 59.791 57.895 0.00 0.00 45.63 4.57
2189 2228 1.209127 CGGTTCAAATCCGTGTGCC 59.791 57.895 0.00 0.00 42.62 5.01
2190 2229 1.209127 GGTTCAAATCCGTGTGCCG 59.791 57.895 0.00 0.00 0.00 5.69
2208 2247 4.101448 GGAGTGGCGTGCCCTCAT 62.101 66.667 22.44 3.57 36.08 2.90
2209 2248 2.512515 GAGTGGCGTGCCCTCATC 60.513 66.667 18.59 5.57 35.16 2.92
2210 2249 3.005539 AGTGGCGTGCCCTCATCT 61.006 61.111 8.69 0.00 34.56 2.90
2211 2250 2.512515 GTGGCGTGCCCTCATCTC 60.513 66.667 8.69 0.00 34.56 2.75
2212 2251 2.685017 TGGCGTGCCCTCATCTCT 60.685 61.111 8.69 0.00 34.56 3.10
2213 2252 2.202987 GGCGTGCCCTCATCTCTG 60.203 66.667 0.00 0.00 0.00 3.35
2214 2253 2.725312 GGCGTGCCCTCATCTCTGA 61.725 63.158 0.00 0.00 0.00 3.27
2215 2254 1.520342 GCGTGCCCTCATCTCTGAC 60.520 63.158 0.00 0.00 0.00 3.51
2216 2255 1.142748 CGTGCCCTCATCTCTGACC 59.857 63.158 0.00 0.00 0.00 4.02
2217 2256 1.524482 GTGCCCTCATCTCTGACCC 59.476 63.158 0.00 0.00 0.00 4.46
2218 2257 0.980231 GTGCCCTCATCTCTGACCCT 60.980 60.000 0.00 0.00 0.00 4.34
2219 2258 0.979709 TGCCCTCATCTCTGACCCTG 60.980 60.000 0.00 0.00 0.00 4.45
2220 2259 1.828768 CCCTCATCTCTGACCCTGC 59.171 63.158 0.00 0.00 0.00 4.85
2221 2260 1.694133 CCCTCATCTCTGACCCTGCC 61.694 65.000 0.00 0.00 0.00 4.85
2222 2261 0.690411 CCTCATCTCTGACCCTGCCT 60.690 60.000 0.00 0.00 0.00 4.75
2223 2262 1.202330 CTCATCTCTGACCCTGCCTT 58.798 55.000 0.00 0.00 0.00 4.35
2224 2263 1.138661 CTCATCTCTGACCCTGCCTTC 59.861 57.143 0.00 0.00 0.00 3.46
2225 2264 0.179089 CATCTCTGACCCTGCCTTCG 60.179 60.000 0.00 0.00 0.00 3.79
2226 2265 0.616111 ATCTCTGACCCTGCCTTCGT 60.616 55.000 0.00 0.00 0.00 3.85
2227 2266 1.216710 CTCTGACCCTGCCTTCGTC 59.783 63.158 0.00 0.00 0.00 4.20
2228 2267 1.533033 TCTGACCCTGCCTTCGTCA 60.533 57.895 0.00 0.00 35.34 4.35
2229 2268 1.374758 CTGACCCTGCCTTCGTCAC 60.375 63.158 0.00 0.00 33.18 3.67
2230 2269 2.047179 GACCCTGCCTTCGTCACC 60.047 66.667 0.00 0.00 0.00 4.02
2231 2270 3.934391 GACCCTGCCTTCGTCACCG 62.934 68.421 0.00 0.00 0.00 4.94
2238 2277 3.334751 CTTCGTCACCGCGCACAA 61.335 61.111 8.75 0.00 0.00 3.33
2239 2278 3.281751 CTTCGTCACCGCGCACAAG 62.282 63.158 8.75 1.26 0.00 3.16
2269 2308 4.514577 CCGTTCCTCGCCATCGCT 62.515 66.667 0.00 0.00 38.35 4.93
2270 2309 3.257561 CGTTCCTCGCCATCGCTG 61.258 66.667 0.00 0.00 35.26 5.18
2271 2310 3.567797 GTTCCTCGCCATCGCTGC 61.568 66.667 0.00 0.00 35.26 5.25
2272 2311 4.838152 TTCCTCGCCATCGCTGCC 62.838 66.667 0.00 0.00 35.26 4.85
2275 2314 3.869272 CTCGCCATCGCTGCCAAC 61.869 66.667 0.00 0.00 35.26 3.77
2276 2315 4.393155 TCGCCATCGCTGCCAACT 62.393 61.111 0.00 0.00 35.26 3.16
2277 2316 3.869272 CGCCATCGCTGCCAACTC 61.869 66.667 0.00 0.00 0.00 3.01
2278 2317 2.747460 GCCATCGCTGCCAACTCA 60.747 61.111 0.00 0.00 0.00 3.41
2279 2318 2.117156 GCCATCGCTGCCAACTCAT 61.117 57.895 0.00 0.00 0.00 2.90
2280 2319 1.725665 CCATCGCTGCCAACTCATG 59.274 57.895 0.00 0.00 0.00 3.07
2281 2320 1.063649 CATCGCTGCCAACTCATGC 59.936 57.895 0.00 0.00 0.00 4.06
2282 2321 2.466982 ATCGCTGCCAACTCATGCG 61.467 57.895 0.00 0.00 46.71 4.73
2283 2322 3.425713 CGCTGCCAACTCATGCGT 61.426 61.111 0.00 0.00 41.45 5.24
2284 2323 2.482374 GCTGCCAACTCATGCGTC 59.518 61.111 0.00 0.00 0.00 5.19
2285 2324 2.780643 CTGCCAACTCATGCGTCG 59.219 61.111 0.00 0.00 0.00 5.12
2286 2325 1.737735 CTGCCAACTCATGCGTCGA 60.738 57.895 0.00 0.00 0.00 4.20
2287 2326 1.690283 CTGCCAACTCATGCGTCGAG 61.690 60.000 0.00 4.45 36.53 4.04
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
124 128 4.824515 AGCTAGGGCGTCGGAGCT 62.825 66.667 8.37 8.37 44.37 4.09
209 213 0.538746 TGCAGTGTACTGGGAGACGA 60.539 55.000 13.41 0.00 43.94 4.20
233 237 0.759346 CTGGGCTCCTAATAACCGCT 59.241 55.000 0.00 0.00 0.00 5.52
296 300 0.178767 CATGAATCAGGCCGTCTCCA 59.821 55.000 0.00 0.00 0.00 3.86
317 321 2.229543 GCAGTTGACATCATTTGCTGGA 59.770 45.455 9.60 0.00 34.67 3.86
361 366 7.521871 AAAGAAGAGTTGAAGATGCTGATTT 57.478 32.000 0.00 0.00 0.00 2.17
369 374 5.013599 AGGCCACTAAAGAAGAGTTGAAGAT 59.986 40.000 5.01 0.00 0.00 2.40
482 487 2.949909 CGGGTGGACGGATGGTGAA 61.950 63.158 0.00 0.00 0.00 3.18
489 494 2.678934 CTTCCTCGGGTGGACGGA 60.679 66.667 0.00 0.00 35.58 4.69
649 654 1.220236 CTTCTCCTCCTCTCCATCCCT 59.780 57.143 0.00 0.00 0.00 4.20
672 678 3.740115 AGTTAAAACGGCATGACTGTCT 58.260 40.909 9.51 0.00 36.64 3.41
792 798 1.073897 GTGAAGGGGCTGCTTGTCT 59.926 57.895 0.00 0.00 0.00 3.41
794 800 2.116125 GGTGAAGGGGCTGCTTGT 59.884 61.111 0.00 0.00 0.00 3.16
915 922 1.213537 GTAGTGGCCGTAGTTGCGA 59.786 57.895 0.00 0.00 0.00 5.10
1037 1044 0.390472 CCTGAGCTTGAACTCCGTCC 60.390 60.000 0.00 0.00 35.72 4.79
1074 1081 1.425066 AGCTTGACCATCACCTTCCAA 59.575 47.619 0.00 0.00 0.00 3.53
1161 1170 0.682292 TGAACGTCACCATGTAGCCA 59.318 50.000 0.00 0.00 0.00 4.75
1200 1209 2.159043 GCCGAAGATGATGACCTTGAGA 60.159 50.000 0.00 0.00 0.00 3.27
1220 1229 1.766143 GACCTCAATGCCATCGTCGC 61.766 60.000 0.00 0.00 0.00 5.19
1345 1354 9.094578 AGCAGTACCACAGATATAATAGTTCAT 57.905 33.333 0.00 0.00 0.00 2.57
1412 1421 3.428452 GCAGCACACATCATAAGCACAAT 60.428 43.478 0.00 0.00 0.00 2.71
1522 1531 1.470098 GTTGCCTGCATGTTAGTCCAG 59.530 52.381 0.00 0.00 0.00 3.86
1688 1727 2.169769 TCCGCGAAGAATCAATAAGGGT 59.830 45.455 8.23 0.00 0.00 4.34
1698 1737 1.745489 GCCAACCTCCGCGAAGAAT 60.745 57.895 8.23 0.00 0.00 2.40
1699 1738 2.358247 GCCAACCTCCGCGAAGAA 60.358 61.111 8.23 0.00 0.00 2.52
1700 1739 3.296709 GAGCCAACCTCCGCGAAGA 62.297 63.158 8.23 0.00 34.35 2.87
1701 1740 2.815647 GAGCCAACCTCCGCGAAG 60.816 66.667 8.23 0.00 34.35 3.79
1708 1747 3.492829 CGATTACCTAAGGAGCCAACCTC 60.493 52.174 0.00 0.00 39.62 3.85
1709 1748 2.434702 CGATTACCTAAGGAGCCAACCT 59.565 50.000 0.00 0.00 42.69 3.50
1710 1749 2.835027 CGATTACCTAAGGAGCCAACC 58.165 52.381 0.00 0.00 0.00 3.77
1711 1750 2.210961 GCGATTACCTAAGGAGCCAAC 58.789 52.381 0.00 0.00 0.00 3.77
1712 1751 1.834896 TGCGATTACCTAAGGAGCCAA 59.165 47.619 0.00 0.00 0.00 4.52
1713 1752 1.491668 TGCGATTACCTAAGGAGCCA 58.508 50.000 0.00 0.00 0.00 4.75
1714 1753 2.841442 ATGCGATTACCTAAGGAGCC 57.159 50.000 0.00 0.00 0.00 4.70
1715 1754 3.304057 GCAAATGCGATTACCTAAGGAGC 60.304 47.826 0.00 0.00 0.00 4.70
1716 1755 3.876914 TGCAAATGCGATTACCTAAGGAG 59.123 43.478 0.35 0.00 45.83 3.69
1717 1756 3.879998 TGCAAATGCGATTACCTAAGGA 58.120 40.909 0.35 0.00 45.83 3.36
1718 1757 4.036734 ACATGCAAATGCGATTACCTAAGG 59.963 41.667 0.00 0.00 45.83 2.69
1719 1758 4.971830 CACATGCAAATGCGATTACCTAAG 59.028 41.667 0.00 0.00 45.83 2.18
1720 1759 4.733230 GCACATGCAAATGCGATTACCTAA 60.733 41.667 9.52 0.00 45.83 2.69
1721 1760 3.243035 GCACATGCAAATGCGATTACCTA 60.243 43.478 9.52 0.00 45.83 3.08
1722 1761 2.480073 GCACATGCAAATGCGATTACCT 60.480 45.455 9.52 0.00 45.83 3.08
1723 1762 1.854126 GCACATGCAAATGCGATTACC 59.146 47.619 9.52 0.00 45.83 2.85
1724 1763 2.801063 AGCACATGCAAATGCGATTAC 58.199 42.857 17.10 0.00 46.74 1.89
1725 1764 3.437428 GAAGCACATGCAAATGCGATTA 58.563 40.909 17.10 0.00 46.74 1.75
1726 1765 2.264813 GAAGCACATGCAAATGCGATT 58.735 42.857 17.10 9.14 46.74 3.34
1727 1766 1.470285 GGAAGCACATGCAAATGCGAT 60.470 47.619 17.10 11.69 46.74 4.58
1728 1767 0.109179 GGAAGCACATGCAAATGCGA 60.109 50.000 17.10 0.00 46.74 5.10
1729 1768 0.388778 TGGAAGCACATGCAAATGCG 60.389 50.000 17.10 0.00 46.74 4.73
1730 1769 1.663643 CATGGAAGCACATGCAAATGC 59.336 47.619 15.80 15.80 45.16 3.56
1731 1770 2.276201 CCATGGAAGCACATGCAAATG 58.724 47.619 5.56 4.26 45.29 2.32
1732 1771 1.208535 CCCATGGAAGCACATGCAAAT 59.791 47.619 15.22 0.00 45.29 2.32
1733 1772 0.609151 CCCATGGAAGCACATGCAAA 59.391 50.000 15.22 0.00 45.29 3.68
1734 1773 1.890625 GCCCATGGAAGCACATGCAA 61.891 55.000 15.22 0.00 45.29 4.08
1735 1774 2.352821 GCCCATGGAAGCACATGCA 61.353 57.895 15.22 0.00 45.29 3.96
1736 1775 2.497770 GCCCATGGAAGCACATGC 59.502 61.111 15.22 0.69 45.29 4.06
1737 1776 2.777972 CGGCCCATGGAAGCACATG 61.778 63.158 15.22 8.55 46.02 3.21
1738 1777 2.440796 CGGCCCATGGAAGCACAT 60.441 61.111 15.22 0.00 0.00 3.21
1739 1778 3.645660 TCGGCCCATGGAAGCACA 61.646 61.111 15.22 0.00 0.00 4.57
1740 1779 3.134127 GTCGGCCCATGGAAGCAC 61.134 66.667 15.22 0.31 0.00 4.40
1741 1780 4.776322 CGTCGGCCCATGGAAGCA 62.776 66.667 15.22 0.00 0.00 3.91
1743 1782 4.776322 TGCGTCGGCCCATGGAAG 62.776 66.667 15.22 3.86 38.85 3.46
1751 1790 1.628447 TATTTTCGTGTGCGTCGGCC 61.628 55.000 0.00 0.00 38.85 6.13
1752 1791 0.164217 TTATTTTCGTGTGCGTCGGC 59.836 50.000 0.00 0.00 39.49 5.54
1753 1792 2.798834 ATTATTTTCGTGTGCGTCGG 57.201 45.000 0.00 0.00 39.49 4.79
1754 1793 6.768515 AAAATATTATTTTCGTGTGCGTCG 57.231 33.333 8.30 0.00 39.49 5.12
1756 1795 9.015577 CCATAAAAATATTATTTTCGTGTGCGT 57.984 29.630 13.37 0.83 39.49 5.24
1757 1796 8.476142 CCCATAAAAATATTATTTTCGTGTGCG 58.524 33.333 13.37 5.26 34.51 5.34
1758 1797 8.272866 GCCCATAAAAATATTATTTTCGTGTGC 58.727 33.333 13.37 13.17 34.51 4.57
1759 1798 8.760569 GGCCCATAAAAATATTATTTTCGTGTG 58.239 33.333 13.37 8.39 34.51 3.82
1760 1799 8.478877 TGGCCCATAAAAATATTATTTTCGTGT 58.521 29.630 13.37 2.91 34.51 4.49
1761 1800 8.760569 GTGGCCCATAAAAATATTATTTTCGTG 58.239 33.333 13.37 13.69 34.51 4.35
1762 1801 8.478877 TGTGGCCCATAAAAATATTATTTTCGT 58.521 29.630 13.37 3.80 34.51 3.85
1763 1802 8.760569 GTGTGGCCCATAAAAATATTATTTTCG 58.239 33.333 13.37 6.81 34.51 3.46
1764 1803 8.760569 CGTGTGGCCCATAAAAATATTATTTTC 58.239 33.333 13.37 2.37 34.51 2.29
1765 1804 8.478877 TCGTGTGGCCCATAAAAATATTATTTT 58.521 29.630 0.00 8.30 36.52 1.82
1766 1805 7.923878 GTCGTGTGGCCCATAAAAATATTATTT 59.076 33.333 0.00 0.00 0.00 1.40
1767 1806 7.068839 TGTCGTGTGGCCCATAAAAATATTATT 59.931 33.333 0.00 0.00 0.00 1.40
1768 1807 6.547880 TGTCGTGTGGCCCATAAAAATATTAT 59.452 34.615 0.00 0.00 0.00 1.28
1769 1808 5.886474 TGTCGTGTGGCCCATAAAAATATTA 59.114 36.000 0.00 0.00 0.00 0.98
1770 1809 4.707448 TGTCGTGTGGCCCATAAAAATATT 59.293 37.500 0.00 0.00 0.00 1.28
1771 1810 4.274147 TGTCGTGTGGCCCATAAAAATAT 58.726 39.130 0.00 0.00 0.00 1.28
1772 1811 3.687125 TGTCGTGTGGCCCATAAAAATA 58.313 40.909 0.00 0.00 0.00 1.40
1773 1812 2.520069 TGTCGTGTGGCCCATAAAAAT 58.480 42.857 0.00 0.00 0.00 1.82
1774 1813 1.982660 TGTCGTGTGGCCCATAAAAA 58.017 45.000 0.00 0.00 0.00 1.94
1775 1814 1.982660 TTGTCGTGTGGCCCATAAAA 58.017 45.000 0.00 0.00 0.00 1.52
1776 1815 2.208132 ATTGTCGTGTGGCCCATAAA 57.792 45.000 0.00 0.00 0.00 1.40
1777 1816 3.351794 TTATTGTCGTGTGGCCCATAA 57.648 42.857 0.00 0.00 0.00 1.90
1778 1817 3.569194 ATTATTGTCGTGTGGCCCATA 57.431 42.857 0.00 0.00 0.00 2.74
1779 1818 2.426738 CAATTATTGTCGTGTGGCCCAT 59.573 45.455 0.00 0.00 0.00 4.00
1780 1819 1.815613 CAATTATTGTCGTGTGGCCCA 59.184 47.619 0.00 0.00 0.00 5.36
1781 1820 2.088423 TCAATTATTGTCGTGTGGCCC 58.912 47.619 0.00 0.00 0.00 5.80
1782 1821 3.376859 TCATCAATTATTGTCGTGTGGCC 59.623 43.478 4.77 0.00 0.00 5.36
1783 1822 4.332543 TCTCATCAATTATTGTCGTGTGGC 59.667 41.667 4.77 0.00 0.00 5.01
1784 1823 6.421377 TTCTCATCAATTATTGTCGTGTGG 57.579 37.500 4.77 2.65 0.00 4.17
1785 1824 9.034544 TCTATTCTCATCAATTATTGTCGTGTG 57.965 33.333 4.77 4.72 0.00 3.82
1786 1825 9.254133 CTCTATTCTCATCAATTATTGTCGTGT 57.746 33.333 4.77 0.00 0.00 4.49
1787 1826 8.219769 GCTCTATTCTCATCAATTATTGTCGTG 58.780 37.037 4.77 3.70 0.00 4.35
1788 1827 8.147058 AGCTCTATTCTCATCAATTATTGTCGT 58.853 33.333 4.77 0.00 0.00 4.34
1789 1828 8.433893 CAGCTCTATTCTCATCAATTATTGTCG 58.566 37.037 4.77 0.00 0.00 4.35
1790 1829 9.270640 ACAGCTCTATTCTCATCAATTATTGTC 57.729 33.333 4.77 0.00 0.00 3.18
1791 1830 9.270640 GACAGCTCTATTCTCATCAATTATTGT 57.729 33.333 4.77 0.00 0.00 2.71
1792 1831 8.433893 CGACAGCTCTATTCTCATCAATTATTG 58.566 37.037 0.00 0.00 0.00 1.90
1793 1832 7.601886 CCGACAGCTCTATTCTCATCAATTATT 59.398 37.037 0.00 0.00 0.00 1.40
1794 1833 7.095910 CCGACAGCTCTATTCTCATCAATTAT 58.904 38.462 0.00 0.00 0.00 1.28
1795 1834 6.040955 ACCGACAGCTCTATTCTCATCAATTA 59.959 38.462 0.00 0.00 0.00 1.40
1796 1835 5.163364 ACCGACAGCTCTATTCTCATCAATT 60.163 40.000 0.00 0.00 0.00 2.32
1797 1836 4.343526 ACCGACAGCTCTATTCTCATCAAT 59.656 41.667 0.00 0.00 0.00 2.57
1798 1837 3.701542 ACCGACAGCTCTATTCTCATCAA 59.298 43.478 0.00 0.00 0.00 2.57
1799 1838 3.291584 ACCGACAGCTCTATTCTCATCA 58.708 45.455 0.00 0.00 0.00 3.07
1800 1839 3.305064 GGACCGACAGCTCTATTCTCATC 60.305 52.174 0.00 0.00 0.00 2.92
1801 1840 2.625790 GGACCGACAGCTCTATTCTCAT 59.374 50.000 0.00 0.00 0.00 2.90
1802 1841 2.025155 GGACCGACAGCTCTATTCTCA 58.975 52.381 0.00 0.00 0.00 3.27
1803 1842 2.034053 CAGGACCGACAGCTCTATTCTC 59.966 54.545 0.00 0.00 0.00 2.87
1804 1843 2.028130 CAGGACCGACAGCTCTATTCT 58.972 52.381 0.00 0.00 0.00 2.40
1805 1844 1.067821 CCAGGACCGACAGCTCTATTC 59.932 57.143 0.00 0.00 0.00 1.75
1806 1845 1.115467 CCAGGACCGACAGCTCTATT 58.885 55.000 0.00 0.00 0.00 1.73
1807 1846 0.757188 CCCAGGACCGACAGCTCTAT 60.757 60.000 0.00 0.00 0.00 1.98
1808 1847 1.379977 CCCAGGACCGACAGCTCTA 60.380 63.158 0.00 0.00 0.00 2.43
1809 1848 2.681778 CCCAGGACCGACAGCTCT 60.682 66.667 0.00 0.00 0.00 4.09
1810 1849 4.459089 GCCCAGGACCGACAGCTC 62.459 72.222 0.00 0.00 0.00 4.09
1813 1852 3.322466 AAGGCCCAGGACCGACAG 61.322 66.667 0.00 0.00 0.00 3.51
1814 1853 3.636231 CAAGGCCCAGGACCGACA 61.636 66.667 0.00 0.00 0.00 4.35
1815 1854 3.192103 AACAAGGCCCAGGACCGAC 62.192 63.158 0.00 0.00 0.00 4.79
1816 1855 2.852075 AACAAGGCCCAGGACCGA 60.852 61.111 0.00 0.00 0.00 4.69
1817 1856 2.359975 GAACAAGGCCCAGGACCG 60.360 66.667 0.00 0.00 0.00 4.79
1818 1857 2.035783 GGAACAAGGCCCAGGACC 59.964 66.667 0.00 0.00 0.00 4.46
1819 1858 0.895559 CAAGGAACAAGGCCCAGGAC 60.896 60.000 0.00 0.00 0.00 3.85
1820 1859 1.360393 ACAAGGAACAAGGCCCAGGA 61.360 55.000 0.00 0.00 0.00 3.86
1821 1860 0.895559 GACAAGGAACAAGGCCCAGG 60.896 60.000 0.00 0.00 0.00 4.45
1822 1861 0.895559 GGACAAGGAACAAGGCCCAG 60.896 60.000 0.00 0.00 0.00 4.45
1823 1862 1.152830 GGACAAGGAACAAGGCCCA 59.847 57.895 0.00 0.00 0.00 5.36
1824 1863 0.469144 TTGGACAAGGAACAAGGCCC 60.469 55.000 0.00 0.00 31.11 5.80
1825 1864 0.673985 GTTGGACAAGGAACAAGGCC 59.326 55.000 0.00 0.00 32.90 5.19
1826 1865 0.673985 GGTTGGACAAGGAACAAGGC 59.326 55.000 0.00 0.00 0.00 4.35
1827 1866 1.328279 GGGTTGGACAAGGAACAAGG 58.672 55.000 0.00 0.00 0.00 3.61
1828 1867 0.951558 CGGGTTGGACAAGGAACAAG 59.048 55.000 0.00 0.00 0.00 3.16
1829 1868 0.466555 CCGGGTTGGACAAGGAACAA 60.467 55.000 0.00 0.00 42.00 2.83
1830 1869 1.149627 CCGGGTTGGACAAGGAACA 59.850 57.895 0.00 0.00 42.00 3.18
1831 1870 1.452801 TCCGGGTTGGACAAGGAAC 59.547 57.895 0.00 0.00 43.74 3.62
1832 1871 3.989225 TCCGGGTTGGACAAGGAA 58.011 55.556 0.00 0.00 43.74 3.36
1840 1879 0.250727 ACAAGTCATGTCCGGGTTGG 60.251 55.000 0.00 0.00 37.96 3.77
1841 1880 3.322514 ACAAGTCATGTCCGGGTTG 57.677 52.632 0.00 0.00 37.96 3.77
1854 1893 0.313043 CCGTACGTGGACTGACAAGT 59.687 55.000 15.21 0.00 40.21 3.16
1855 1894 0.388134 CCCGTACGTGGACTGACAAG 60.388 60.000 15.21 0.00 0.00 3.16
1856 1895 0.822944 TCCCGTACGTGGACTGACAA 60.823 55.000 18.02 0.00 0.00 3.18
1857 1896 1.228215 TCCCGTACGTGGACTGACA 60.228 57.895 18.02 0.00 0.00 3.58
1858 1897 1.505353 CTCCCGTACGTGGACTGAC 59.495 63.158 18.02 0.00 0.00 3.51
1859 1898 1.676635 CCTCCCGTACGTGGACTGA 60.677 63.158 18.02 3.80 0.00 3.41
1860 1899 1.676635 TCCTCCCGTACGTGGACTG 60.677 63.158 18.02 13.26 0.00 3.51
1861 1900 1.676967 GTCCTCCCGTACGTGGACT 60.677 63.158 28.95 0.00 43.91 3.85
1862 1901 1.318158 ATGTCCTCCCGTACGTGGAC 61.318 60.000 29.26 29.26 46.53 4.02
1863 1902 1.000521 ATGTCCTCCCGTACGTGGA 60.001 57.895 19.92 19.92 0.00 4.02
1864 1903 1.141019 CATGTCCTCCCGTACGTGG 59.859 63.158 15.21 14.78 0.00 4.94
1865 1904 1.097232 TACATGTCCTCCCGTACGTG 58.903 55.000 15.21 2.17 38.35 4.49
1866 1905 1.952296 GATACATGTCCTCCCGTACGT 59.048 52.381 15.21 0.00 0.00 3.57
1867 1906 2.228059 AGATACATGTCCTCCCGTACG 58.772 52.381 8.69 8.69 0.00 3.67
1868 1907 5.254901 AGATAGATACATGTCCTCCCGTAC 58.745 45.833 0.00 0.00 0.00 3.67
1869 1908 5.516059 AGATAGATACATGTCCTCCCGTA 57.484 43.478 0.00 0.00 0.00 4.02
1870 1909 4.390129 AGATAGATACATGTCCTCCCGT 57.610 45.455 0.00 0.00 0.00 5.28
1871 1910 6.361433 AGATAGATAGATACATGTCCTCCCG 58.639 44.000 0.00 0.00 0.00 5.14
1872 1911 9.515226 GATAGATAGATAGATACATGTCCTCCC 57.485 40.741 0.00 0.00 0.00 4.30
1895 1934 9.983804 CGCTCATACGTTGTAGATTTATAGATA 57.016 33.333 0.00 0.00 0.00 1.98
1896 1935 8.727910 TCGCTCATACGTTGTAGATTTATAGAT 58.272 33.333 0.00 0.00 0.00 1.98
1897 1936 8.091385 TCGCTCATACGTTGTAGATTTATAGA 57.909 34.615 0.00 0.00 0.00 1.98
1898 1937 8.016229 ACTCGCTCATACGTTGTAGATTTATAG 58.984 37.037 0.00 0.00 0.00 1.31
1899 1938 7.868775 ACTCGCTCATACGTTGTAGATTTATA 58.131 34.615 0.00 0.00 0.00 0.98
1900 1939 6.736123 ACTCGCTCATACGTTGTAGATTTAT 58.264 36.000 0.00 0.00 0.00 1.40
1901 1940 6.127810 ACTCGCTCATACGTTGTAGATTTA 57.872 37.500 0.00 0.00 0.00 1.40
1902 1941 4.995124 ACTCGCTCATACGTTGTAGATTT 58.005 39.130 0.00 0.00 0.00 2.17
1903 1942 4.634184 ACTCGCTCATACGTTGTAGATT 57.366 40.909 0.00 0.00 0.00 2.40
1904 1943 4.634184 AACTCGCTCATACGTTGTAGAT 57.366 40.909 0.00 0.00 0.00 1.98
1905 1944 5.746307 ATAACTCGCTCATACGTTGTAGA 57.254 39.130 0.00 0.00 0.00 2.59
1906 1945 9.603298 TTTATATAACTCGCTCATACGTTGTAG 57.397 33.333 0.00 0.00 0.00 2.74
1907 1946 9.949174 TTTTATATAACTCGCTCATACGTTGTA 57.051 29.630 0.00 0.00 0.00 2.41
1908 1947 8.861033 TTTTATATAACTCGCTCATACGTTGT 57.139 30.769 0.00 0.00 0.00 3.32
1931 1970 3.250040 CACGGATCTGTCGTTTCCTTTTT 59.750 43.478 3.54 0.00 38.94 1.94
1932 1971 2.806244 CACGGATCTGTCGTTTCCTTTT 59.194 45.455 3.54 0.00 38.94 2.27
1933 1972 2.036733 TCACGGATCTGTCGTTTCCTTT 59.963 45.455 3.54 0.00 38.94 3.11
1934 1973 1.616865 TCACGGATCTGTCGTTTCCTT 59.383 47.619 3.54 0.00 38.94 3.36
1935 1974 1.202582 CTCACGGATCTGTCGTTTCCT 59.797 52.381 3.54 0.00 38.94 3.36
1936 1975 1.630148 CTCACGGATCTGTCGTTTCC 58.370 55.000 3.54 0.00 38.94 3.13
1937 1976 0.992802 GCTCACGGATCTGTCGTTTC 59.007 55.000 3.54 0.00 38.94 2.78
1938 1977 0.389948 GGCTCACGGATCTGTCGTTT 60.390 55.000 3.54 0.00 38.94 3.60
1939 1978 1.215647 GGCTCACGGATCTGTCGTT 59.784 57.895 3.54 0.00 38.94 3.85
1940 1979 2.885861 GGCTCACGGATCTGTCGT 59.114 61.111 3.54 0.00 41.93 4.34
1941 1980 2.278206 CGGCTCACGGATCTGTCG 60.278 66.667 3.54 1.34 39.42 4.35
1950 1989 2.434884 ATGCTTCACCGGCTCACG 60.435 61.111 0.00 0.00 43.80 4.35
1951 1990 2.401766 CCATGCTTCACCGGCTCAC 61.402 63.158 0.00 0.00 0.00 3.51
1952 1991 2.046023 CCATGCTTCACCGGCTCA 60.046 61.111 0.00 0.00 0.00 4.26
1953 1992 2.825836 CCCATGCTTCACCGGCTC 60.826 66.667 0.00 0.00 0.00 4.70
1956 1995 4.738998 TGGCCCATGCTTCACCGG 62.739 66.667 0.00 0.00 37.74 5.28
1957 1996 3.443045 GTGGCCCATGCTTCACCG 61.443 66.667 0.00 0.00 37.74 4.94
1958 1997 0.395586 TATGTGGCCCATGCTTCACC 60.396 55.000 14.84 0.00 37.74 4.02
1959 1998 1.696063 ATATGTGGCCCATGCTTCAC 58.304 50.000 14.84 0.00 37.74 3.18
1960 1999 2.442878 AGTATATGTGGCCCATGCTTCA 59.557 45.455 14.84 0.00 37.74 3.02
1961 2000 3.077359 GAGTATATGTGGCCCATGCTTC 58.923 50.000 14.84 5.86 37.74 3.86
1962 2001 2.550855 CGAGTATATGTGGCCCATGCTT 60.551 50.000 14.84 4.84 37.74 3.91
1963 2002 1.002430 CGAGTATATGTGGCCCATGCT 59.998 52.381 14.84 10.53 37.74 3.79
1964 2003 1.001974 TCGAGTATATGTGGCCCATGC 59.998 52.381 14.84 6.93 34.86 4.06
1965 2004 3.196469 AGATCGAGTATATGTGGCCCATG 59.804 47.826 14.84 0.00 34.86 3.66
1966 2005 3.196469 CAGATCGAGTATATGTGGCCCAT 59.804 47.826 0.00 6.08 37.58 4.00
1967 2006 2.562738 CAGATCGAGTATATGTGGCCCA 59.437 50.000 0.00 0.00 0.00 5.36
1968 2007 2.093973 CCAGATCGAGTATATGTGGCCC 60.094 54.545 0.00 0.00 31.76 5.80
1969 2008 2.826128 TCCAGATCGAGTATATGTGGCC 59.174 50.000 0.00 0.00 37.61 5.36
1970 2009 4.400884 AGATCCAGATCGAGTATATGTGGC 59.599 45.833 2.08 0.00 42.48 5.01
1971 2010 5.163571 CCAGATCCAGATCGAGTATATGTGG 60.164 48.000 2.08 0.00 42.48 4.17
1972 2011 5.163571 CCCAGATCCAGATCGAGTATATGTG 60.164 48.000 2.08 0.00 42.48 3.21
1973 2012 4.952957 CCCAGATCCAGATCGAGTATATGT 59.047 45.833 2.08 0.00 42.48 2.29
1974 2013 4.340666 CCCCAGATCCAGATCGAGTATATG 59.659 50.000 2.08 0.00 42.48 1.78
1975 2014 4.541705 CCCCAGATCCAGATCGAGTATAT 58.458 47.826 2.08 0.00 42.48 0.86
1976 2015 3.309193 CCCCCAGATCCAGATCGAGTATA 60.309 52.174 2.08 0.00 42.48 1.47
1977 2016 2.558575 CCCCCAGATCCAGATCGAGTAT 60.559 54.545 2.08 0.00 42.48 2.12
1978 2017 1.203063 CCCCCAGATCCAGATCGAGTA 60.203 57.143 2.08 0.00 42.48 2.59
1979 2018 0.470833 CCCCCAGATCCAGATCGAGT 60.471 60.000 2.08 0.00 42.48 4.18
1980 2019 0.470833 ACCCCCAGATCCAGATCGAG 60.471 60.000 2.08 0.05 42.48 4.04
1981 2020 0.760567 CACCCCCAGATCCAGATCGA 60.761 60.000 2.08 0.00 42.48 3.59
1982 2021 0.760567 TCACCCCCAGATCCAGATCG 60.761 60.000 2.08 0.00 42.48 3.69
1983 2022 1.055040 CTCACCCCCAGATCCAGATC 58.945 60.000 0.00 0.00 38.09 2.75
1984 2023 0.644380 TCTCACCCCCAGATCCAGAT 59.356 55.000 0.00 0.00 0.00 2.90
1985 2024 0.031716 CTCTCACCCCCAGATCCAGA 60.032 60.000 0.00 0.00 0.00 3.86
1986 2025 1.053264 CCTCTCACCCCCAGATCCAG 61.053 65.000 0.00 0.00 0.00 3.86
1987 2026 1.003442 CCTCTCACCCCCAGATCCA 59.997 63.158 0.00 0.00 0.00 3.41
1988 2027 2.447714 GCCTCTCACCCCCAGATCC 61.448 68.421 0.00 0.00 0.00 3.36
1989 2028 2.801631 CGCCTCTCACCCCCAGATC 61.802 68.421 0.00 0.00 0.00 2.75
1990 2029 2.765807 CGCCTCTCACCCCCAGAT 60.766 66.667 0.00 0.00 0.00 2.90
1995 2034 4.864334 CATGGCGCCTCTCACCCC 62.864 72.222 29.70 0.00 0.00 4.95
1996 2035 4.864334 CCATGGCGCCTCTCACCC 62.864 72.222 29.70 0.00 0.00 4.61
1997 2036 4.864334 CCCATGGCGCCTCTCACC 62.864 72.222 29.70 0.00 0.00 4.02
1998 2037 4.864334 CCCCATGGCGCCTCTCAC 62.864 72.222 29.70 0.00 0.00 3.51
2000 2039 3.543536 GATCCCCATGGCGCCTCTC 62.544 68.421 29.70 9.57 0.00 3.20
2001 2040 3.564218 GATCCCCATGGCGCCTCT 61.564 66.667 29.70 12.59 0.00 3.69
2002 2041 3.420206 TTGATCCCCATGGCGCCTC 62.420 63.158 29.70 15.47 0.00 4.70
2003 2042 3.419580 TTGATCCCCATGGCGCCT 61.420 61.111 29.70 10.60 0.00 5.52
2004 2043 2.908940 CTTGATCCCCATGGCGCC 60.909 66.667 22.73 22.73 0.00 6.53
2005 2044 3.599704 GCTTGATCCCCATGGCGC 61.600 66.667 6.09 0.00 0.00 6.53
2006 2045 2.908940 GGCTTGATCCCCATGGCG 60.909 66.667 6.09 0.00 36.16 5.69
2007 2046 2.908940 CGGCTTGATCCCCATGGC 60.909 66.667 6.09 0.00 40.59 4.40
2008 2047 1.526917 GACGGCTTGATCCCCATGG 60.527 63.158 4.14 4.14 0.00 3.66
2009 2048 1.526917 GGACGGCTTGATCCCCATG 60.527 63.158 0.00 0.00 0.00 3.66
2010 2049 1.694169 AGGACGGCTTGATCCCCAT 60.694 57.895 0.00 0.00 35.38 4.00
2011 2050 2.285368 AGGACGGCTTGATCCCCA 60.285 61.111 0.00 0.00 35.38 4.96
2012 2051 1.700042 ATGAGGACGGCTTGATCCCC 61.700 60.000 0.00 0.00 35.38 4.81
2013 2052 0.181350 AATGAGGACGGCTTGATCCC 59.819 55.000 0.00 0.00 35.38 3.85
2014 2053 2.910688 TAATGAGGACGGCTTGATCC 57.089 50.000 0.00 0.00 34.98 3.36
2015 2054 3.743396 GTCATAATGAGGACGGCTTGATC 59.257 47.826 0.00 0.00 0.00 2.92
2016 2055 3.495100 GGTCATAATGAGGACGGCTTGAT 60.495 47.826 0.00 0.00 37.24 2.57
2017 2056 2.158957 GGTCATAATGAGGACGGCTTGA 60.159 50.000 0.00 0.00 37.24 3.02
2018 2057 2.213499 GGTCATAATGAGGACGGCTTG 58.787 52.381 0.00 0.00 37.24 4.01
2019 2058 1.141053 GGGTCATAATGAGGACGGCTT 59.859 52.381 0.00 0.00 37.24 4.35
2020 2059 0.759346 GGGTCATAATGAGGACGGCT 59.241 55.000 0.00 0.00 37.24 5.52
2021 2060 0.250338 GGGGTCATAATGAGGACGGC 60.250 60.000 0.00 0.00 37.24 5.68
2022 2061 0.396811 GGGGGTCATAATGAGGACGG 59.603 60.000 0.00 0.00 37.24 4.79
2023 2062 1.128200 TGGGGGTCATAATGAGGACG 58.872 55.000 0.00 0.00 37.24 4.79
2024 2063 2.224867 CCATGGGGGTCATAATGAGGAC 60.225 54.545 2.85 0.00 35.59 3.85
2025 2064 2.065007 CCATGGGGGTCATAATGAGGA 58.935 52.381 2.85 0.00 34.12 3.71
2026 2065 2.040813 CTCCATGGGGGTCATAATGAGG 59.959 54.545 13.02 0.00 38.11 3.86
2027 2066 2.553904 GCTCCATGGGGGTCATAATGAG 60.554 54.545 15.13 0.00 38.11 2.90
2028 2067 1.425066 GCTCCATGGGGGTCATAATGA 59.575 52.381 15.13 0.00 38.11 2.57
2029 2068 1.426598 AGCTCCATGGGGGTCATAATG 59.573 52.381 11.56 0.00 38.11 1.90
2030 2069 1.707427 GAGCTCCATGGGGGTCATAAT 59.293 52.381 34.06 1.53 38.11 1.28
2031 2070 1.140312 GAGCTCCATGGGGGTCATAA 58.860 55.000 34.06 1.95 38.11 1.90
2032 2071 1.121407 CGAGCTCCATGGGGGTCATA 61.121 60.000 36.34 5.76 38.11 2.15
2033 2072 2.446848 CGAGCTCCATGGGGGTCAT 61.447 63.158 36.34 8.37 38.11 3.06
2034 2073 3.083349 CGAGCTCCATGGGGGTCA 61.083 66.667 36.34 7.26 38.11 4.02
2035 2074 4.554036 GCGAGCTCCATGGGGGTC 62.554 72.222 30.44 30.44 38.11 4.46
2076 2115 3.649277 CTTCAGTCGCGACAGGGGG 62.649 68.421 37.85 21.76 0.00 5.40
2077 2116 2.125912 CTTCAGTCGCGACAGGGG 60.126 66.667 37.85 24.07 0.00 4.79
2078 2117 2.125912 CCTTCAGTCGCGACAGGG 60.126 66.667 37.85 27.40 0.00 4.45
2079 2118 2.811317 GCCTTCAGTCGCGACAGG 60.811 66.667 37.85 33.49 0.00 4.00
2086 2125 4.735132 TTCCGCCGCCTTCAGTCG 62.735 66.667 0.00 0.00 0.00 4.18
2087 2126 3.119096 GTTCCGCCGCCTTCAGTC 61.119 66.667 0.00 0.00 0.00 3.51
2088 2127 3.591254 GAGTTCCGCCGCCTTCAGT 62.591 63.158 0.00 0.00 0.00 3.41
2089 2128 2.815647 GAGTTCCGCCGCCTTCAG 60.816 66.667 0.00 0.00 0.00 3.02
2090 2129 4.388499 GGAGTTCCGCCGCCTTCA 62.388 66.667 0.00 0.00 0.00 3.02
2136 2175 0.732880 CGACACCCACGACAGATGTC 60.733 60.000 2.78 2.78 41.47 3.06
2137 2176 1.289066 CGACACCCACGACAGATGT 59.711 57.895 0.00 0.00 0.00 3.06
2138 2177 1.446099 CCGACACCCACGACAGATG 60.446 63.158 0.00 0.00 0.00 2.90
2139 2178 1.906824 ACCGACACCCACGACAGAT 60.907 57.895 0.00 0.00 0.00 2.90
2140 2179 2.520020 ACCGACACCCACGACAGA 60.520 61.111 0.00 0.00 0.00 3.41
2141 2180 2.355837 CACCGACACCCACGACAG 60.356 66.667 0.00 0.00 0.00 3.51
2142 2181 2.358193 CTTCACCGACACCCACGACA 62.358 60.000 0.00 0.00 0.00 4.35
2143 2182 1.663702 CTTCACCGACACCCACGAC 60.664 63.158 0.00 0.00 0.00 4.34
2144 2183 2.079020 GACTTCACCGACACCCACGA 62.079 60.000 0.00 0.00 0.00 4.35
2145 2184 1.663702 GACTTCACCGACACCCACG 60.664 63.158 0.00 0.00 0.00 4.94
2146 2185 1.663702 CGACTTCACCGACACCCAC 60.664 63.158 0.00 0.00 0.00 4.61
2147 2186 2.732016 CGACTTCACCGACACCCA 59.268 61.111 0.00 0.00 0.00 4.51
2148 2187 2.048503 CCGACTTCACCGACACCC 60.049 66.667 0.00 0.00 0.00 4.61
2149 2188 2.737376 GCCGACTTCACCGACACC 60.737 66.667 0.00 0.00 0.00 4.16
2150 2189 3.103911 CGCCGACTTCACCGACAC 61.104 66.667 0.00 0.00 0.00 3.67
2151 2190 3.598715 ACGCCGACTTCACCGACA 61.599 61.111 0.00 0.00 0.00 4.35
2152 2191 3.103911 CACGCCGACTTCACCGAC 61.104 66.667 0.00 0.00 0.00 4.79
2172 2211 1.209127 CGGCACACGGATTTGAACC 59.791 57.895 0.00 0.00 39.42 3.62
2173 2212 4.838959 CGGCACACGGATTTGAAC 57.161 55.556 0.00 0.00 39.42 3.18
2191 2230 4.101448 ATGAGGGCACGCCACTCC 62.101 66.667 18.22 0.15 37.98 3.85
2192 2231 2.512515 GATGAGGGCACGCCACTC 60.513 66.667 10.83 13.78 37.98 3.51
2193 2232 3.005539 AGATGAGGGCACGCCACT 61.006 61.111 10.83 4.57 37.98 4.00
2194 2233 2.512515 GAGATGAGGGCACGCCAC 60.513 66.667 10.83 4.04 37.98 5.01
2195 2234 2.685017 AGAGATGAGGGCACGCCA 60.685 61.111 10.83 0.00 37.98 5.69
2196 2235 2.202987 CAGAGATGAGGGCACGCC 60.203 66.667 0.00 0.00 0.00 5.68
2197 2236 1.520342 GTCAGAGATGAGGGCACGC 60.520 63.158 0.00 0.00 0.00 5.34
2198 2237 1.142748 GGTCAGAGATGAGGGCACG 59.857 63.158 0.00 0.00 0.00 5.34
2199 2238 0.980231 AGGGTCAGAGATGAGGGCAC 60.980 60.000 0.00 0.00 0.00 5.01
2200 2239 0.979709 CAGGGTCAGAGATGAGGGCA 60.980 60.000 0.00 0.00 0.00 5.36
2201 2240 1.828768 CAGGGTCAGAGATGAGGGC 59.171 63.158 0.00 0.00 0.00 5.19
2202 2241 1.694133 GGCAGGGTCAGAGATGAGGG 61.694 65.000 0.00 0.00 0.00 4.30
2203 2242 0.690411 AGGCAGGGTCAGAGATGAGG 60.690 60.000 0.00 0.00 0.00 3.86
2204 2243 1.138661 GAAGGCAGGGTCAGAGATGAG 59.861 57.143 0.00 0.00 0.00 2.90
2205 2244 1.198713 GAAGGCAGGGTCAGAGATGA 58.801 55.000 0.00 0.00 0.00 2.92
2206 2245 0.179089 CGAAGGCAGGGTCAGAGATG 60.179 60.000 0.00 0.00 0.00 2.90
2207 2246 0.616111 ACGAAGGCAGGGTCAGAGAT 60.616 55.000 0.00 0.00 0.00 2.75
2208 2247 1.228894 ACGAAGGCAGGGTCAGAGA 60.229 57.895 0.00 0.00 0.00 3.10
2209 2248 1.216710 GACGAAGGCAGGGTCAGAG 59.783 63.158 0.00 0.00 0.00 3.35
2210 2249 1.533033 TGACGAAGGCAGGGTCAGA 60.533 57.895 0.00 0.00 35.89 3.27
2211 2250 1.374758 GTGACGAAGGCAGGGTCAG 60.375 63.158 5.02 0.00 40.99 3.51
2212 2251 2.741092 GTGACGAAGGCAGGGTCA 59.259 61.111 0.00 1.19 38.29 4.02
2213 2252 2.047179 GGTGACGAAGGCAGGGTC 60.047 66.667 0.00 0.00 0.00 4.46
2252 2291 4.514577 AGCGATGGCGAGGAACGG 62.515 66.667 0.00 0.00 46.35 4.44
2253 2292 3.257561 CAGCGATGGCGAGGAACG 61.258 66.667 0.00 0.00 46.35 3.95
2254 2293 3.567797 GCAGCGATGGCGAGGAAC 61.568 66.667 1.46 0.00 46.35 3.62
2255 2294 4.838152 GGCAGCGATGGCGAGGAA 62.838 66.667 12.68 0.00 46.35 3.36
2258 2297 3.869272 GTTGGCAGCGATGGCGAG 61.869 66.667 22.65 0.00 46.35 5.03
2259 2298 4.393155 AGTTGGCAGCGATGGCGA 62.393 61.111 22.65 18.51 46.35 5.54
2260 2299 3.869272 GAGTTGGCAGCGATGGCG 61.869 66.667 22.65 0.00 46.35 5.69
2261 2300 2.117156 ATGAGTTGGCAGCGATGGC 61.117 57.895 21.51 21.51 40.37 4.40
2262 2301 1.725665 CATGAGTTGGCAGCGATGG 59.274 57.895 1.46 0.00 0.00 3.51
2263 2302 1.063649 GCATGAGTTGGCAGCGATG 59.936 57.895 0.00 0.00 0.00 3.84
2264 2303 3.506108 GCATGAGTTGGCAGCGAT 58.494 55.556 0.00 0.00 0.00 4.58
2267 2306 2.482374 GACGCATGAGTTGGCAGC 59.518 61.111 2.82 0.00 0.00 5.25
2268 2307 1.690283 CTCGACGCATGAGTTGGCAG 61.690 60.000 15.85 4.36 0.00 4.85
2269 2308 1.737735 CTCGACGCATGAGTTGGCA 60.738 57.895 15.85 0.00 0.00 4.92
2270 2309 3.084579 CTCGACGCATGAGTTGGC 58.915 61.111 15.85 0.00 0.00 4.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.