Multiple sequence alignment - TraesCS7A01G491800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G491800 chr7A 100.000 3146 0 0 1 3146 680540512 680543657 0.000000e+00 5810.0
1 TraesCS7A01G491800 chr7A 92.683 246 18 0 2899 3144 512187944 512188189 3.860000e-94 355.0
2 TraesCS7A01G491800 chr7A 90.588 85 8 0 103 187 247257066 247256982 2.560000e-21 113.0
3 TraesCS7A01G491800 chr7A 82.500 80 13 1 2517 2595 105421787 105421866 5.630000e-08 69.4
4 TraesCS7A01G491800 chr7A 82.500 80 13 1 2517 2595 105423984 105424063 5.630000e-08 69.4
5 TraesCS7A01G491800 chr7D 90.535 1627 87 32 467 2072 589055884 589054304 0.000000e+00 2089.0
6 TraesCS7A01G491800 chr7D 88.010 834 57 20 2077 2902 589054223 589053425 0.000000e+00 946.0
7 TraesCS7A01G491800 chr7D 95.951 247 10 0 2900 3146 589049583 589049337 4.890000e-108 401.0
8 TraesCS7A01G491800 chr7D 92.237 219 15 2 2928 3146 432085135 432084919 3.050000e-80 309.0
9 TraesCS7A01G491800 chr7D 80.745 161 20 3 2726 2886 46845895 46846044 7.130000e-22 115.0
10 TraesCS7A01G491800 chr7B 90.386 1321 81 24 704 2008 663308888 663310178 0.000000e+00 1694.0
11 TraesCS7A01G491800 chr7B 89.744 195 16 3 466 657 663308683 663308876 2.420000e-61 246.0
12 TraesCS7A01G491800 chr7B 83.516 91 12 2 2507 2594 697484601 697484511 7.230000e-12 82.4
13 TraesCS7A01G491800 chr7B 82.759 87 12 2 2512 2595 685198485 685198399 1.210000e-09 75.0
14 TraesCS7A01G491800 chr1D 90.496 242 23 0 2903 3144 123946709 123946468 1.410000e-83 320.0
15 TraesCS7A01G491800 chr1D 81.287 171 31 1 2719 2888 193678116 193678286 1.520000e-28 137.0
16 TraesCS7A01G491800 chr1D 82.500 80 13 1 2517 2595 434737034 434736955 5.630000e-08 69.4
17 TraesCS7A01G491800 chr6B 88.933 253 23 3 2899 3146 1299511 1299763 1.100000e-79 307.0
18 TraesCS7A01G491800 chr6B 88.538 253 24 3 2899 3146 1311808 1312060 5.100000e-78 302.0
19 TraesCS7A01G491800 chr6B 80.000 95 7 7 211 295 700090472 700090380 3.390000e-05 60.2
20 TraesCS7A01G491800 chr4D 91.403 221 17 2 2928 3146 214559031 214559251 5.100000e-78 302.0
21 TraesCS7A01G491800 chr4D 91.324 219 19 0 2928 3146 15218863 15218645 1.830000e-77 300.0
22 TraesCS7A01G491800 chr4D 87.324 71 9 0 119 189 399221679 399221609 7.230000e-12 82.4
23 TraesCS7A01G491800 chr3D 91.441 222 14 3 2928 3144 549357056 549357277 1.830000e-77 300.0
24 TraesCS7A01G491800 chr3D 82.474 97 9 8 89 179 591042931 591043025 9.360000e-11 78.7
25 TraesCS7A01G491800 chr3D 96.875 32 0 1 260 291 12056848 12056878 6.000000e-03 52.8
26 TraesCS7A01G491800 chr3B 79.275 386 68 7 2497 2880 284387394 284387769 3.110000e-65 259.0
27 TraesCS7A01G491800 chr3B 83.951 81 11 2 95 175 15969638 15969716 3.360000e-10 76.8
28 TraesCS7A01G491800 chr3B 80.899 89 14 2 103 188 8502842 8502754 2.030000e-07 67.6
29 TraesCS7A01G491800 chr3B 96.875 32 1 0 208 239 130679335 130679304 2.000000e-03 54.7
30 TraesCS7A01G491800 chr4A 76.369 347 73 8 2497 2841 733788415 733788754 8.970000e-41 178.0
31 TraesCS7A01G491800 chr4A 81.481 81 7 3 212 287 647387642 647387565 3.390000e-05 60.2
32 TraesCS7A01G491800 chr1B 74.619 394 87 10 2500 2888 268559403 268559788 9.030000e-36 161.0
33 TraesCS7A01G491800 chr1B 100.000 31 0 0 211 241 486243227 486243197 1.220000e-04 58.4
34 TraesCS7A01G491800 chr2D 86.029 136 17 2 1645 1779 352905056 352904922 9.090000e-31 145.0
35 TraesCS7A01G491800 chr2D 86.207 87 12 0 103 189 192312618 192312704 9.290000e-16 95.3
36 TraesCS7A01G491800 chr2D 91.837 49 1 3 212 258 530385639 530385592 7.280000e-07 65.8
37 TraesCS7A01G491800 chr2B 85.185 135 20 0 1645 1779 419322109 419321975 4.230000e-29 139.0
38 TraesCS7A01G491800 chr2B 83.908 87 12 2 95 181 27810513 27810429 7.230000e-12 82.4
39 TraesCS7A01G491800 chr2B 92.857 42 3 0 200 241 216064580 216064539 9.420000e-06 62.1
40 TraesCS7A01G491800 chr2B 92.857 42 3 0 200 241 314359925 314359966 9.420000e-06 62.1
41 TraesCS7A01G491800 chr4B 90.141 71 7 0 119 189 492761132 492761062 3.340000e-15 93.5
42 TraesCS7A01G491800 chr3A 90.141 71 6 1 103 172 53027998 53028068 1.200000e-14 91.6
43 TraesCS7A01G491800 chr1A 84.337 83 11 2 2517 2597 244605741 244605659 2.600000e-11 80.5
44 TraesCS7A01G491800 chr5D 82.609 92 12 3 2509 2596 514407215 514407306 9.360000e-11 78.7
45 TraesCS7A01G491800 chr5D 84.932 73 10 1 2524 2595 536408525 536408597 4.350000e-09 73.1
46 TraesCS7A01G491800 chrUn 90.000 50 2 2 208 254 99106848 99106799 9.420000e-06 62.1
47 TraesCS7A01G491800 chr5B 91.304 46 3 1 196 241 288005400 288005356 9.420000e-06 62.1
48 TraesCS7A01G491800 chr5A 84.848 66 5 4 212 273 400852938 400852874 9.420000e-06 62.1
49 TraesCS7A01G491800 chr6A 100.000 28 0 0 260 287 216627085 216627058 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G491800 chr7A 680540512 680543657 3145 False 5810.000000 5810 100.000000 1 3146 1 chr7A.!!$F2 3145
1 TraesCS7A01G491800 chr7D 589049337 589055884 6547 True 1145.333333 2089 91.498667 467 3146 3 chr7D.!!$R2 2679
2 TraesCS7A01G491800 chr7B 663308683 663310178 1495 False 970.000000 1694 90.065000 466 2008 2 chr7B.!!$F1 1542

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
996 1015 0.036952 TTAGCAGCTGAGCTCACCAC 60.037 55.000 20.43 5.38 45.26 4.16 F
1162 1183 1.202639 CGTCATCCATTTGGGGATCGA 60.203 52.381 0.00 0.00 45.91 3.59 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1944 1970 0.318762 GGTTCAGAGGAAGCGACAGT 59.681 55.0 0.0 0.0 41.18 3.55 R
2569 2678 0.512952 GCGCCTGTAATTATGCCTCG 59.487 55.0 0.0 0.0 0.00 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 4.439305 TTCCATGACTGCAATTTGTAGC 57.561 40.909 13.59 7.86 33.13 3.58
24 25 3.689347 TCCATGACTGCAATTTGTAGCT 58.311 40.909 13.59 0.00 33.13 3.32
25 26 3.691118 TCCATGACTGCAATTTGTAGCTC 59.309 43.478 13.59 10.80 33.13 4.09
26 27 3.441222 CCATGACTGCAATTTGTAGCTCA 59.559 43.478 13.59 15.00 33.13 4.26
27 28 4.097437 CCATGACTGCAATTTGTAGCTCAT 59.903 41.667 13.59 16.23 34.27 2.90
28 29 5.393787 CCATGACTGCAATTTGTAGCTCATT 60.394 40.000 19.53 3.31 32.97 2.57
29 30 6.183360 CCATGACTGCAATTTGTAGCTCATTA 60.183 38.462 19.53 1.87 32.97 1.90
30 31 6.816134 TGACTGCAATTTGTAGCTCATTAA 57.184 33.333 13.59 0.00 33.13 1.40
31 32 6.611381 TGACTGCAATTTGTAGCTCATTAAC 58.389 36.000 13.59 0.00 33.13 2.01
32 33 6.206438 TGACTGCAATTTGTAGCTCATTAACA 59.794 34.615 13.59 0.00 33.13 2.41
33 34 7.094248 TGACTGCAATTTGTAGCTCATTAACAT 60.094 33.333 13.59 0.00 33.13 2.71
34 35 8.279970 ACTGCAATTTGTAGCTCATTAACATA 57.720 30.769 13.59 0.00 33.13 2.29
35 36 8.184192 ACTGCAATTTGTAGCTCATTAACATAC 58.816 33.333 13.59 0.00 33.13 2.39
36 37 8.049655 TGCAATTTGTAGCTCATTAACATACA 57.950 30.769 0.00 0.00 0.00 2.29
37 38 7.967854 TGCAATTTGTAGCTCATTAACATACAC 59.032 33.333 0.00 0.00 0.00 2.90
38 39 8.184192 GCAATTTGTAGCTCATTAACATACACT 58.816 33.333 0.00 0.00 0.00 3.55
42 43 8.840833 TTGTAGCTCATTAACATACACTTTCA 57.159 30.769 0.00 0.00 0.00 2.69
43 44 8.479313 TGTAGCTCATTAACATACACTTTCAG 57.521 34.615 0.00 0.00 0.00 3.02
44 45 8.094548 TGTAGCTCATTAACATACACTTTCAGT 58.905 33.333 0.00 0.00 0.00 3.41
45 46 7.986085 AGCTCATTAACATACACTTTCAGTT 57.014 32.000 0.00 0.00 0.00 3.16
46 47 7.810658 AGCTCATTAACATACACTTTCAGTTG 58.189 34.615 0.00 0.00 0.00 3.16
47 48 7.661437 AGCTCATTAACATACACTTTCAGTTGA 59.339 33.333 0.00 0.00 0.00 3.18
48 49 7.959651 GCTCATTAACATACACTTTCAGTTGAG 59.040 37.037 0.00 0.00 0.00 3.02
49 50 8.902540 TCATTAACATACACTTTCAGTTGAGT 57.097 30.769 0.00 0.00 0.00 3.41
50 51 8.773645 TCATTAACATACACTTTCAGTTGAGTG 58.226 33.333 2.22 2.22 46.65 3.51
51 52 8.773645 CATTAACATACACTTTCAGTTGAGTGA 58.226 33.333 10.16 0.00 44.65 3.41
52 53 8.725405 TTAACATACACTTTCAGTTGAGTGAA 57.275 30.769 10.16 0.00 44.65 3.18
53 54 7.624360 AACATACACTTTCAGTTGAGTGAAA 57.376 32.000 12.12 12.12 44.65 2.69
54 55 7.807977 ACATACACTTTCAGTTGAGTGAAAT 57.192 32.000 12.87 3.67 43.72 2.17
55 56 8.225603 ACATACACTTTCAGTTGAGTGAAATT 57.774 30.769 12.87 6.44 43.72 1.82
56 57 8.686334 ACATACACTTTCAGTTGAGTGAAATTT 58.314 29.630 12.87 0.00 43.72 1.82
60 61 8.137437 ACACTTTCAGTTGAGTGAAATTTATGG 58.863 33.333 12.87 5.00 43.72 2.74
61 62 8.352201 CACTTTCAGTTGAGTGAAATTTATGGA 58.648 33.333 12.87 0.00 43.72 3.41
62 63 8.912988 ACTTTCAGTTGAGTGAAATTTATGGAA 58.087 29.630 12.87 0.00 43.72 3.53
63 64 9.918630 CTTTCAGTTGAGTGAAATTTATGGAAT 57.081 29.630 12.87 0.00 43.72 3.01
64 65 9.912634 TTTCAGTTGAGTGAAATTTATGGAATC 57.087 29.630 9.35 0.00 40.68 2.52
65 66 7.751732 TCAGTTGAGTGAAATTTATGGAATCG 58.248 34.615 0.00 0.00 0.00 3.34
66 67 7.390440 TCAGTTGAGTGAAATTTATGGAATCGT 59.610 33.333 0.00 0.00 0.00 3.73
67 68 7.693951 CAGTTGAGTGAAATTTATGGAATCGTC 59.306 37.037 0.00 0.00 0.00 4.20
68 69 6.344572 TGAGTGAAATTTATGGAATCGTCG 57.655 37.500 0.00 0.00 0.00 5.12
69 70 6.103330 TGAGTGAAATTTATGGAATCGTCGA 58.897 36.000 0.00 0.00 0.00 4.20
70 71 6.255670 TGAGTGAAATTTATGGAATCGTCGAG 59.744 38.462 0.00 0.00 0.00 4.04
71 72 5.006746 AGTGAAATTTATGGAATCGTCGAGC 59.993 40.000 0.00 0.00 0.00 5.03
72 73 4.873259 TGAAATTTATGGAATCGTCGAGCA 59.127 37.500 0.00 0.00 0.00 4.26
73 74 5.006649 TGAAATTTATGGAATCGTCGAGCAG 59.993 40.000 0.00 0.00 0.00 4.24
74 75 2.509052 TTATGGAATCGTCGAGCAGG 57.491 50.000 0.00 0.00 0.00 4.85
75 76 1.399714 TATGGAATCGTCGAGCAGGT 58.600 50.000 0.00 0.00 0.00 4.00
76 77 1.399714 ATGGAATCGTCGAGCAGGTA 58.600 50.000 0.00 0.00 0.00 3.08
77 78 0.738975 TGGAATCGTCGAGCAGGTAG 59.261 55.000 0.00 0.00 0.00 3.18
78 79 1.022735 GGAATCGTCGAGCAGGTAGA 58.977 55.000 0.00 0.00 0.00 2.59
79 80 1.404391 GGAATCGTCGAGCAGGTAGAA 59.596 52.381 0.00 0.00 0.00 2.10
80 81 2.159282 GGAATCGTCGAGCAGGTAGAAA 60.159 50.000 0.00 0.00 0.00 2.52
81 82 3.508762 GAATCGTCGAGCAGGTAGAAAA 58.491 45.455 0.00 0.00 0.00 2.29
82 83 3.802948 ATCGTCGAGCAGGTAGAAAAT 57.197 42.857 0.00 0.00 0.00 1.82
83 84 4.913335 ATCGTCGAGCAGGTAGAAAATA 57.087 40.909 0.00 0.00 0.00 1.40
84 85 4.913335 TCGTCGAGCAGGTAGAAAATAT 57.087 40.909 0.00 0.00 0.00 1.28
85 86 4.607955 TCGTCGAGCAGGTAGAAAATATG 58.392 43.478 0.00 0.00 0.00 1.78
86 87 3.182572 CGTCGAGCAGGTAGAAAATATGC 59.817 47.826 0.00 0.00 37.15 3.14
87 88 4.119862 GTCGAGCAGGTAGAAAATATGCA 58.880 43.478 0.00 0.00 39.34 3.96
88 89 4.752101 GTCGAGCAGGTAGAAAATATGCAT 59.248 41.667 3.79 3.79 39.34 3.96
89 90 4.751600 TCGAGCAGGTAGAAAATATGCATG 59.248 41.667 10.16 0.00 39.34 4.06
90 91 4.612259 CGAGCAGGTAGAAAATATGCATGC 60.612 45.833 11.82 11.82 39.81 4.06
91 92 4.209538 AGCAGGTAGAAAATATGCATGCA 58.790 39.130 25.04 25.04 41.56 3.96
92 93 4.831155 AGCAGGTAGAAAATATGCATGCAT 59.169 37.500 33.92 33.92 41.56 3.96
93 94 4.921515 GCAGGTAGAAAATATGCATGCATG 59.078 41.667 37.43 22.70 39.40 4.06
94 95 5.508489 GCAGGTAGAAAATATGCATGCATGT 60.508 40.000 37.43 30.43 39.40 3.21
95 96 6.294120 GCAGGTAGAAAATATGCATGCATGTA 60.294 38.462 37.43 23.60 39.40 2.29
96 97 7.650890 CAGGTAGAAAATATGCATGCATGTAA 58.349 34.615 37.43 22.01 37.82 2.41
97 98 8.136800 CAGGTAGAAAATATGCATGCATGTAAA 58.863 33.333 37.43 21.65 37.82 2.01
98 99 8.863086 AGGTAGAAAATATGCATGCATGTAAAT 58.137 29.630 37.43 22.84 37.82 1.40
99 100 9.480053 GGTAGAAAATATGCATGCATGTAAATT 57.520 29.630 37.43 26.62 37.82 1.82
108 109 7.490962 TGCATGCATGTAAATTACTACTACC 57.509 36.000 26.79 5.79 0.00 3.18
109 110 7.279615 TGCATGCATGTAAATTACTACTACCT 58.720 34.615 26.79 0.00 0.00 3.08
110 111 7.441157 TGCATGCATGTAAATTACTACTACCTC 59.559 37.037 26.79 5.09 0.00 3.85
111 112 7.657761 GCATGCATGTAAATTACTACTACCTCT 59.342 37.037 26.79 0.00 0.00 3.69
112 113 8.982685 CATGCATGTAAATTACTACTACCTCTG 58.017 37.037 18.91 0.00 0.00 3.35
113 114 8.074613 TGCATGTAAATTACTACTACCTCTGT 57.925 34.615 4.67 0.00 0.00 3.41
114 115 8.537016 TGCATGTAAATTACTACTACCTCTGTT 58.463 33.333 4.67 0.00 0.00 3.16
185 186 9.268282 TGTCTTATATTAGTTTTCAGAGGGAGT 57.732 33.333 0.00 0.00 0.00 3.85
191 192 9.710818 ATATTAGTTTTCAGAGGGAGTACTACA 57.289 33.333 7.57 0.00 0.00 2.74
192 193 5.725325 AGTTTTCAGAGGGAGTACTACAC 57.275 43.478 7.57 0.22 0.00 2.90
193 194 4.217983 AGTTTTCAGAGGGAGTACTACACG 59.782 45.833 7.57 0.00 0.00 4.49
194 195 3.708403 TTCAGAGGGAGTACTACACGA 57.292 47.619 7.57 0.00 0.00 4.35
195 196 2.983229 TCAGAGGGAGTACTACACGAC 58.017 52.381 7.57 0.00 0.00 4.34
196 197 2.303890 TCAGAGGGAGTACTACACGACA 59.696 50.000 7.57 0.00 0.00 4.35
197 198 2.419324 CAGAGGGAGTACTACACGACAC 59.581 54.545 7.57 0.00 0.00 3.67
198 199 2.039480 AGAGGGAGTACTACACGACACA 59.961 50.000 7.57 0.00 0.00 3.72
199 200 2.816087 GAGGGAGTACTACACGACACAA 59.184 50.000 7.57 0.00 0.00 3.33
200 201 3.225104 AGGGAGTACTACACGACACAAA 58.775 45.455 7.57 0.00 0.00 2.83
201 202 3.830755 AGGGAGTACTACACGACACAAAT 59.169 43.478 7.57 0.00 0.00 2.32
202 203 4.282703 AGGGAGTACTACACGACACAAATT 59.717 41.667 7.57 0.00 0.00 1.82
203 204 4.992951 GGGAGTACTACACGACACAAATTT 59.007 41.667 7.57 0.00 0.00 1.82
204 205 6.015180 AGGGAGTACTACACGACACAAATTTA 60.015 38.462 7.57 0.00 0.00 1.40
205 206 6.309737 GGGAGTACTACACGACACAAATTTAG 59.690 42.308 7.57 0.00 0.00 1.85
206 207 6.309737 GGAGTACTACACGACACAAATTTAGG 59.690 42.308 0.00 0.00 0.00 2.69
207 208 5.636543 AGTACTACACGACACAAATTTAGGC 59.363 40.000 0.00 0.00 0.00 3.93
208 209 4.638304 ACTACACGACACAAATTTAGGCT 58.362 39.130 0.00 0.00 0.00 4.58
209 210 5.786311 ACTACACGACACAAATTTAGGCTA 58.214 37.500 0.00 0.00 0.00 3.93
210 211 6.403878 ACTACACGACACAAATTTAGGCTAT 58.596 36.000 0.00 0.00 0.00 2.97
211 212 6.877322 ACTACACGACACAAATTTAGGCTATT 59.123 34.615 0.00 0.00 0.00 1.73
212 213 8.036575 ACTACACGACACAAATTTAGGCTATTA 58.963 33.333 0.00 0.00 0.00 0.98
213 214 7.068692 ACACGACACAAATTTAGGCTATTAC 57.931 36.000 0.00 0.00 0.00 1.89
214 215 6.877322 ACACGACACAAATTTAGGCTATTACT 59.123 34.615 0.00 0.00 0.00 2.24
215 216 7.064253 ACACGACACAAATTTAGGCTATTACTC 59.936 37.037 0.00 0.00 0.00 2.59
216 217 6.537660 ACGACACAAATTTAGGCTATTACTCC 59.462 38.462 0.00 0.00 0.00 3.85
217 218 6.018180 CGACACAAATTTAGGCTATTACTCCC 60.018 42.308 0.00 0.00 0.00 4.30
218 219 6.970191 ACACAAATTTAGGCTATTACTCCCT 58.030 36.000 0.00 0.00 0.00 4.20
219 220 7.054751 ACACAAATTTAGGCTATTACTCCCTC 58.945 38.462 0.00 0.00 0.00 4.30
220 221 6.486993 CACAAATTTAGGCTATTACTCCCTCC 59.513 42.308 0.00 0.00 0.00 4.30
221 222 6.159751 ACAAATTTAGGCTATTACTCCCTCCA 59.840 38.462 0.00 0.00 0.00 3.86
222 223 7.147123 ACAAATTTAGGCTATTACTCCCTCCAT 60.147 37.037 0.00 0.00 0.00 3.41
223 224 6.628644 ATTTAGGCTATTACTCCCTCCATC 57.371 41.667 0.00 0.00 0.00 3.51
224 225 2.909217 AGGCTATTACTCCCTCCATCC 58.091 52.381 0.00 0.00 0.00 3.51
225 226 1.909986 GGCTATTACTCCCTCCATCCC 59.090 57.143 0.00 0.00 0.00 3.85
226 227 2.621070 GCTATTACTCCCTCCATCCCA 58.379 52.381 0.00 0.00 0.00 4.37
227 228 2.979678 GCTATTACTCCCTCCATCCCAA 59.020 50.000 0.00 0.00 0.00 4.12
228 229 3.394606 GCTATTACTCCCTCCATCCCAAA 59.605 47.826 0.00 0.00 0.00 3.28
229 230 4.141251 GCTATTACTCCCTCCATCCCAAAA 60.141 45.833 0.00 0.00 0.00 2.44
230 231 5.458215 GCTATTACTCCCTCCATCCCAAAAT 60.458 44.000 0.00 0.00 0.00 1.82
231 232 6.240176 GCTATTACTCCCTCCATCCCAAAATA 60.240 42.308 0.00 0.00 0.00 1.40
232 233 6.606241 ATTACTCCCTCCATCCCAAAATAA 57.394 37.500 0.00 0.00 0.00 1.40
233 234 4.526438 ACTCCCTCCATCCCAAAATAAG 57.474 45.455 0.00 0.00 0.00 1.73
234 235 3.858638 ACTCCCTCCATCCCAAAATAAGT 59.141 43.478 0.00 0.00 0.00 2.24
235 236 4.210331 CTCCCTCCATCCCAAAATAAGTG 58.790 47.826 0.00 0.00 0.00 3.16
236 237 3.596046 TCCCTCCATCCCAAAATAAGTGT 59.404 43.478 0.00 0.00 0.00 3.55
237 238 3.954258 CCCTCCATCCCAAAATAAGTGTC 59.046 47.826 0.00 0.00 0.00 3.67
238 239 4.325344 CCCTCCATCCCAAAATAAGTGTCT 60.325 45.833 0.00 0.00 0.00 3.41
239 240 5.264395 CCTCCATCCCAAAATAAGTGTCTT 58.736 41.667 0.00 0.00 0.00 3.01
240 241 6.423182 CCTCCATCCCAAAATAAGTGTCTTA 58.577 40.000 0.00 0.00 0.00 2.10
241 242 6.543831 CCTCCATCCCAAAATAAGTGTCTTAG 59.456 42.308 0.00 0.00 0.00 2.18
242 243 7.027874 TCCATCCCAAAATAAGTGTCTTAGT 57.972 36.000 0.00 0.00 0.00 2.24
243 244 8.153221 TCCATCCCAAAATAAGTGTCTTAGTA 57.847 34.615 0.00 0.00 0.00 1.82
244 245 8.778059 TCCATCCCAAAATAAGTGTCTTAGTAT 58.222 33.333 0.00 0.00 0.00 2.12
273 274 9.490379 AGTTGAGTACTAAGACACTTATTTTGG 57.510 33.333 0.00 0.00 34.56 3.28
274 275 8.718734 GTTGAGTACTAAGACACTTATTTTGGG 58.281 37.037 0.00 0.00 0.00 4.12
275 276 8.197592 TGAGTACTAAGACACTTATTTTGGGA 57.802 34.615 0.00 0.00 0.00 4.37
276 277 8.822805 TGAGTACTAAGACACTTATTTTGGGAT 58.177 33.333 0.00 0.00 0.00 3.85
281 282 9.462606 ACTAAGACACTTATTTTGGGATAAAGG 57.537 33.333 0.00 0.00 0.00 3.11
282 283 7.718334 AAGACACTTATTTTGGGATAAAGGG 57.282 36.000 0.00 0.00 0.00 3.95
283 284 7.039722 AGACACTTATTTTGGGATAAAGGGA 57.960 36.000 0.00 0.00 0.00 4.20
284 285 7.119387 AGACACTTATTTTGGGATAAAGGGAG 58.881 38.462 0.00 0.00 0.00 4.30
285 286 6.800890 ACACTTATTTTGGGATAAAGGGAGT 58.199 36.000 0.00 0.00 0.00 3.85
286 287 7.935405 ACACTTATTTTGGGATAAAGGGAGTA 58.065 34.615 0.00 0.00 0.00 2.59
287 288 8.053355 ACACTTATTTTGGGATAAAGGGAGTAG 58.947 37.037 0.00 0.00 0.00 2.57
288 289 7.013369 CACTTATTTTGGGATAAAGGGAGTAGC 59.987 40.741 0.00 0.00 0.00 3.58
289 290 4.938575 TTTTGGGATAAAGGGAGTAGCA 57.061 40.909 0.00 0.00 0.00 3.49
290 291 4.938575 TTTGGGATAAAGGGAGTAGCAA 57.061 40.909 0.00 0.00 0.00 3.91
291 292 4.938575 TTGGGATAAAGGGAGTAGCAAA 57.061 40.909 0.00 0.00 0.00 3.68
292 293 5.466127 TTGGGATAAAGGGAGTAGCAAAT 57.534 39.130 0.00 0.00 0.00 2.32
293 294 6.584471 TTGGGATAAAGGGAGTAGCAAATA 57.416 37.500 0.00 0.00 0.00 1.40
294 295 6.584471 TGGGATAAAGGGAGTAGCAAATAA 57.416 37.500 0.00 0.00 0.00 1.40
295 296 6.362248 TGGGATAAAGGGAGTAGCAAATAAC 58.638 40.000 0.00 0.00 0.00 1.89
296 297 5.469084 GGGATAAAGGGAGTAGCAAATAACG 59.531 44.000 0.00 0.00 0.00 3.18
297 298 5.049612 GGATAAAGGGAGTAGCAAATAACGC 60.050 44.000 0.00 0.00 0.00 4.84
298 299 3.343941 AAGGGAGTAGCAAATAACGCA 57.656 42.857 0.00 0.00 0.00 5.24
299 300 3.343941 AGGGAGTAGCAAATAACGCAA 57.656 42.857 0.00 0.00 0.00 4.85
300 301 3.681593 AGGGAGTAGCAAATAACGCAAA 58.318 40.909 0.00 0.00 0.00 3.68
301 302 4.076394 AGGGAGTAGCAAATAACGCAAAA 58.924 39.130 0.00 0.00 0.00 2.44
302 303 4.156008 AGGGAGTAGCAAATAACGCAAAAG 59.844 41.667 0.00 0.00 0.00 2.27
303 304 4.155280 GGGAGTAGCAAATAACGCAAAAGA 59.845 41.667 0.00 0.00 0.00 2.52
304 305 5.163652 GGGAGTAGCAAATAACGCAAAAGAT 60.164 40.000 0.00 0.00 0.00 2.40
305 306 6.037830 GGGAGTAGCAAATAACGCAAAAGATA 59.962 38.462 0.00 0.00 0.00 1.98
306 307 7.414762 GGGAGTAGCAAATAACGCAAAAGATAA 60.415 37.037 0.00 0.00 0.00 1.75
307 308 8.129211 GGAGTAGCAAATAACGCAAAAGATAAT 58.871 33.333 0.00 0.00 0.00 1.28
308 309 9.503427 GAGTAGCAAATAACGCAAAAGATAATT 57.497 29.630 0.00 0.00 0.00 1.40
312 313 9.248291 AGCAAATAACGCAAAAGATAATTATGG 57.752 29.630 1.78 0.00 0.00 2.74
313 314 9.243637 GCAAATAACGCAAAAGATAATTATGGA 57.756 29.630 1.78 0.00 0.00 3.41
316 317 9.950680 AATAACGCAAAAGATAATTATGGACTG 57.049 29.630 1.78 0.00 0.00 3.51
317 318 7.624360 AACGCAAAAGATAATTATGGACTGA 57.376 32.000 1.78 0.00 0.00 3.41
318 319 7.624360 ACGCAAAAGATAATTATGGACTGAA 57.376 32.000 1.78 0.00 0.00 3.02
319 320 7.697691 ACGCAAAAGATAATTATGGACTGAAG 58.302 34.615 1.78 0.00 0.00 3.02
320 321 6.634436 CGCAAAAGATAATTATGGACTGAAGC 59.366 38.462 1.78 0.00 0.00 3.86
321 322 6.920210 GCAAAAGATAATTATGGACTGAAGCC 59.080 38.462 1.78 0.00 0.00 4.35
322 323 7.416664 GCAAAAGATAATTATGGACTGAAGCCA 60.417 37.037 1.78 0.00 40.24 4.75
324 325 7.992754 AAGATAATTATGGACTGAAGCCATC 57.007 36.000 1.78 0.00 44.70 3.51
325 326 7.327064 AGATAATTATGGACTGAAGCCATCT 57.673 36.000 1.78 0.00 44.70 2.90
326 327 7.166851 AGATAATTATGGACTGAAGCCATCTG 58.833 38.462 1.78 0.00 44.70 2.90
327 328 2.627515 TATGGACTGAAGCCATCTGC 57.372 50.000 8.83 0.00 44.70 4.26
328 329 0.622136 ATGGACTGAAGCCATCTGCA 59.378 50.000 0.00 0.00 42.31 4.41
329 330 0.622136 TGGACTGAAGCCATCTGCAT 59.378 50.000 0.00 0.00 44.83 3.96
330 331 1.022735 GGACTGAAGCCATCTGCATG 58.977 55.000 0.00 0.00 44.83 4.06
331 332 1.407851 GGACTGAAGCCATCTGCATGA 60.408 52.381 0.00 0.00 44.83 3.07
332 333 2.573369 GACTGAAGCCATCTGCATGAT 58.427 47.619 0.00 0.00 44.83 2.45
333 334 2.548904 GACTGAAGCCATCTGCATGATC 59.451 50.000 0.00 0.00 44.83 2.92
334 335 1.880675 CTGAAGCCATCTGCATGATCC 59.119 52.381 0.00 0.00 44.83 3.36
335 336 0.873054 GAAGCCATCTGCATGATCCG 59.127 55.000 0.00 0.00 44.83 4.18
336 337 0.182061 AAGCCATCTGCATGATCCGT 59.818 50.000 0.00 0.00 44.83 4.69
337 338 0.534427 AGCCATCTGCATGATCCGTG 60.534 55.000 0.00 0.00 44.83 4.94
338 339 1.947013 CCATCTGCATGATCCGTGC 59.053 57.895 11.97 11.97 45.53 5.34
339 340 0.534427 CCATCTGCATGATCCGTGCT 60.534 55.000 17.71 0.00 45.53 4.40
340 341 0.586802 CATCTGCATGATCCGTGCTG 59.413 55.000 17.71 16.88 45.53 4.41
341 342 1.164662 ATCTGCATGATCCGTGCTGC 61.165 55.000 17.71 7.71 45.53 5.25
342 343 2.825387 TGCATGATCCGTGCTGCC 60.825 61.111 17.71 0.00 45.53 4.85
343 344 3.945434 GCATGATCCGTGCTGCCG 61.945 66.667 11.68 0.00 42.44 5.69
344 345 2.202919 CATGATCCGTGCTGCCGA 60.203 61.111 11.24 0.00 0.00 5.54
345 346 1.815003 CATGATCCGTGCTGCCGAA 60.815 57.895 11.24 0.00 0.00 4.30
346 347 1.146930 ATGATCCGTGCTGCCGAAT 59.853 52.632 11.24 0.00 0.00 3.34
347 348 0.392706 ATGATCCGTGCTGCCGAATA 59.607 50.000 11.24 0.00 0.00 1.75
348 349 0.176910 TGATCCGTGCTGCCGAATAA 59.823 50.000 11.24 0.00 0.00 1.40
349 350 0.861837 GATCCGTGCTGCCGAATAAG 59.138 55.000 11.24 0.00 0.00 1.73
350 351 1.160329 ATCCGTGCTGCCGAATAAGC 61.160 55.000 11.24 0.00 39.96 3.09
351 352 2.106074 CCGTGCTGCCGAATAAGCA 61.106 57.895 11.24 0.00 46.84 3.91
353 354 4.711892 TGCTGCCGAATAAGCACA 57.288 50.000 0.00 0.00 44.26 4.57
354 355 3.173540 TGCTGCCGAATAAGCACAT 57.826 47.368 0.00 0.00 44.26 3.21
355 356 1.016627 TGCTGCCGAATAAGCACATC 58.983 50.000 0.00 0.00 44.26 3.06
356 357 1.303309 GCTGCCGAATAAGCACATCT 58.697 50.000 0.00 0.00 39.31 2.90
357 358 1.003116 GCTGCCGAATAAGCACATCTG 60.003 52.381 0.00 0.00 39.31 2.90
358 359 1.003116 CTGCCGAATAAGCACATCTGC 60.003 52.381 0.00 0.00 44.63 4.26
367 368 1.351012 GCACATCTGCTGACGATGC 59.649 57.895 8.97 8.97 41.45 3.91
368 369 1.363885 GCACATCTGCTGACGATGCA 61.364 55.000 16.06 0.00 41.45 3.96
369 370 1.081094 CACATCTGCTGACGATGCAA 58.919 50.000 0.00 0.00 41.45 4.08
370 371 1.081892 ACATCTGCTGACGATGCAAC 58.918 50.000 0.00 0.00 41.45 4.17
371 372 1.338484 ACATCTGCTGACGATGCAACT 60.338 47.619 0.00 0.00 41.45 3.16
372 373 1.326852 CATCTGCTGACGATGCAACTC 59.673 52.381 0.00 0.00 40.13 3.01
373 374 0.318120 TCTGCTGACGATGCAACTCA 59.682 50.000 0.00 0.00 40.13 3.41
374 375 0.441533 CTGCTGACGATGCAACTCAC 59.558 55.000 0.00 0.00 40.13 3.51
375 376 0.249826 TGCTGACGATGCAACTCACA 60.250 50.000 0.00 0.00 37.51 3.58
376 377 0.867746 GCTGACGATGCAACTCACAA 59.132 50.000 0.00 0.00 0.00 3.33
377 378 1.466167 GCTGACGATGCAACTCACAAT 59.534 47.619 0.00 0.00 0.00 2.71
378 379 2.475187 GCTGACGATGCAACTCACAATC 60.475 50.000 0.00 0.00 0.00 2.67
379 380 2.738314 CTGACGATGCAACTCACAATCA 59.262 45.455 0.00 0.00 0.00 2.57
380 381 3.337358 TGACGATGCAACTCACAATCAT 58.663 40.909 0.00 0.00 0.00 2.45
381 382 3.752747 TGACGATGCAACTCACAATCATT 59.247 39.130 0.00 0.00 0.00 2.57
382 383 4.142838 TGACGATGCAACTCACAATCATTC 60.143 41.667 0.00 0.00 0.00 2.67
383 384 3.752747 ACGATGCAACTCACAATCATTCA 59.247 39.130 0.00 0.00 0.00 2.57
384 385 4.216042 ACGATGCAACTCACAATCATTCAA 59.784 37.500 0.00 0.00 0.00 2.69
385 386 5.106038 ACGATGCAACTCACAATCATTCAAT 60.106 36.000 0.00 0.00 0.00 2.57
386 387 5.803461 CGATGCAACTCACAATCATTCAATT 59.197 36.000 0.00 0.00 0.00 2.32
387 388 6.968335 CGATGCAACTCACAATCATTCAATTA 59.032 34.615 0.00 0.00 0.00 1.40
388 389 7.165318 CGATGCAACTCACAATCATTCAATTAG 59.835 37.037 0.00 0.00 0.00 1.73
389 390 6.623486 TGCAACTCACAATCATTCAATTAGG 58.377 36.000 0.00 0.00 0.00 2.69
390 391 6.433716 TGCAACTCACAATCATTCAATTAGGA 59.566 34.615 0.00 0.00 0.00 2.94
391 392 6.749118 GCAACTCACAATCATTCAATTAGGAC 59.251 38.462 0.00 0.00 0.00 3.85
392 393 6.668541 ACTCACAATCATTCAATTAGGACG 57.331 37.500 0.00 0.00 0.00 4.79
393 394 5.065218 ACTCACAATCATTCAATTAGGACGC 59.935 40.000 0.00 0.00 0.00 5.19
394 395 4.335315 TCACAATCATTCAATTAGGACGCC 59.665 41.667 0.00 0.00 0.00 5.68
395 396 4.096231 CACAATCATTCAATTAGGACGCCA 59.904 41.667 0.00 0.00 0.00 5.69
396 397 4.336433 ACAATCATTCAATTAGGACGCCAG 59.664 41.667 0.00 0.00 0.00 4.85
397 398 3.904800 TCATTCAATTAGGACGCCAGA 57.095 42.857 0.00 0.00 0.00 3.86
398 399 4.214986 TCATTCAATTAGGACGCCAGAA 57.785 40.909 0.00 0.00 0.00 3.02
399 400 4.780815 TCATTCAATTAGGACGCCAGAAT 58.219 39.130 0.00 0.00 0.00 2.40
400 401 4.576053 TCATTCAATTAGGACGCCAGAATG 59.424 41.667 0.00 0.00 41.12 2.67
401 402 3.904800 TCAATTAGGACGCCAGAATGA 57.095 42.857 0.00 0.00 39.69 2.57
402 403 4.422073 TCAATTAGGACGCCAGAATGAT 57.578 40.909 0.00 0.00 39.69 2.45
403 404 5.545063 TCAATTAGGACGCCAGAATGATA 57.455 39.130 0.00 0.00 39.69 2.15
404 405 5.924356 TCAATTAGGACGCCAGAATGATAA 58.076 37.500 0.00 0.00 39.69 1.75
405 406 5.991606 TCAATTAGGACGCCAGAATGATAAG 59.008 40.000 0.00 0.00 39.69 1.73
406 407 5.808366 ATTAGGACGCCAGAATGATAAGA 57.192 39.130 0.00 0.00 39.69 2.10
407 408 5.607939 TTAGGACGCCAGAATGATAAGAA 57.392 39.130 0.00 0.00 39.69 2.52
408 409 4.696479 AGGACGCCAGAATGATAAGAAT 57.304 40.909 0.00 0.00 39.69 2.40
409 410 5.041191 AGGACGCCAGAATGATAAGAATT 57.959 39.130 0.00 0.00 39.69 2.17
410 411 6.174720 AGGACGCCAGAATGATAAGAATTA 57.825 37.500 0.00 0.00 39.69 1.40
411 412 6.591935 AGGACGCCAGAATGATAAGAATTAA 58.408 36.000 0.00 0.00 39.69 1.40
412 413 7.227156 AGGACGCCAGAATGATAAGAATTAAT 58.773 34.615 0.00 0.00 39.69 1.40
413 414 8.375506 AGGACGCCAGAATGATAAGAATTAATA 58.624 33.333 0.00 0.00 39.69 0.98
414 415 9.167311 GGACGCCAGAATGATAAGAATTAATAT 57.833 33.333 0.00 0.00 39.69 1.28
416 417 9.950496 ACGCCAGAATGATAAGAATTAATATCT 57.050 29.630 9.95 0.00 39.69 1.98
430 431 9.716556 AGAATTAATATCTGTATATCCCCGTCT 57.283 33.333 0.00 0.00 0.00 4.18
436 437 9.716556 AATATCTGTATATCCCCGTCTTTATCT 57.283 33.333 0.00 0.00 0.00 1.98
456 457 6.969993 ATCTATAAAGAGAGGCGAAAGTCT 57.030 37.500 0.00 0.00 41.07 3.24
457 458 6.744112 ATCTATAAAGAGAGGCGAAAGTCTG 58.256 40.000 0.00 0.00 39.21 3.51
458 459 6.322712 ATCTATAAAGAGAGGCGAAAGTCTGT 59.677 38.462 0.00 0.00 44.61 3.41
459 460 7.147811 ATCTATAAAGAGAGGCGAAAGTCTGTT 60.148 37.037 0.00 0.00 40.56 3.16
471 472 5.500931 GCGAAAGTCTGTTTCAAGATATCCG 60.501 44.000 0.00 0.00 0.00 4.18
488 489 3.887621 TCCGGTCTTTGGATAACAGAG 57.112 47.619 0.00 0.00 32.78 3.35
489 490 2.500098 TCCGGTCTTTGGATAACAGAGG 59.500 50.000 0.00 0.00 32.40 3.69
490 491 2.280628 CGGTCTTTGGATAACAGAGGC 58.719 52.381 0.00 0.00 35.31 4.70
491 492 2.354704 CGGTCTTTGGATAACAGAGGCA 60.355 50.000 0.00 0.00 37.64 4.75
495 496 5.471456 GGTCTTTGGATAACAGAGGCATATG 59.529 44.000 0.00 0.00 37.64 1.78
496 497 6.058183 GTCTTTGGATAACAGAGGCATATGT 58.942 40.000 4.29 0.00 36.05 2.29
497 498 6.203723 GTCTTTGGATAACAGAGGCATATGTC 59.796 42.308 0.00 0.00 36.05 3.06
498 499 4.257267 TGGATAACAGAGGCATATGTCG 57.743 45.455 0.00 0.00 28.47 4.35
499 500 3.895041 TGGATAACAGAGGCATATGTCGA 59.105 43.478 0.00 0.00 28.47 4.20
507 509 5.069119 ACAGAGGCATATGTCGAATCTACAA 59.931 40.000 4.29 0.00 0.00 2.41
510 512 4.692625 AGGCATATGTCGAATCTACAATGC 59.307 41.667 17.74 17.74 38.80 3.56
655 659 1.377594 TGGCGCATGAGCAAGATGT 60.378 52.632 23.18 0.00 42.27 3.06
656 660 0.107752 TGGCGCATGAGCAAGATGTA 60.108 50.000 23.18 0.00 42.27 2.29
657 661 0.305922 GGCGCATGAGCAAGATGTAC 59.694 55.000 23.18 0.00 42.27 2.90
658 662 1.009078 GCGCATGAGCAAGATGTACA 58.991 50.000 17.16 0.00 42.27 2.90
659 663 1.004185 GCGCATGAGCAAGATGTACAG 60.004 52.381 17.16 0.00 42.27 2.74
688 692 0.322456 TGGAGGCATGCAACCTACAC 60.322 55.000 25.19 9.57 43.53 2.90
826 830 3.577848 TGTTACTGGTTACCTTTCCGCTA 59.422 43.478 2.07 0.00 0.00 4.26
828 832 1.067354 ACTGGTTACCTTTCCGCTACG 60.067 52.381 2.07 0.00 0.00 3.51
848 852 0.609957 TGCCCAGCCTCACTCATTTG 60.610 55.000 0.00 0.00 0.00 2.32
868 872 3.146066 TGCTTATGTTTCTTCGGTGCTT 58.854 40.909 0.00 0.00 0.00 3.91
879 883 4.832248 TCTTCGGTGCTTGTGATAATTCT 58.168 39.130 0.00 0.00 0.00 2.40
946 958 6.630444 AAGCAGCCTTCAACATAGATAATG 57.370 37.500 0.00 0.00 41.74 1.90
996 1015 0.036952 TTAGCAGCTGAGCTCACCAC 60.037 55.000 20.43 5.38 45.26 4.16
1066 1085 1.524621 ACAGCTCACACACACAGCC 60.525 57.895 0.00 0.00 33.28 4.85
1099 1118 3.119849 ACAATCGCAAGCAACTCCATTAC 60.120 43.478 0.00 0.00 37.18 1.89
1104 1123 2.356069 GCAAGCAACTCCATTACCTAGC 59.644 50.000 0.00 0.00 0.00 3.42
1105 1124 3.878778 CAAGCAACTCCATTACCTAGCT 58.121 45.455 0.00 0.00 0.00 3.32
1106 1125 4.683400 GCAAGCAACTCCATTACCTAGCTA 60.683 45.833 0.00 0.00 0.00 3.32
1107 1126 4.946478 AGCAACTCCATTACCTAGCTAG 57.054 45.455 14.20 14.20 0.00 3.42
1116 1135 7.732593 ACTCCATTACCTAGCTAGATTCATCTT 59.267 37.037 22.70 0.00 38.32 2.40
1117 1136 7.901029 TCCATTACCTAGCTAGATTCATCTTG 58.099 38.462 22.70 4.40 38.32 3.02
1118 1137 7.730332 TCCATTACCTAGCTAGATTCATCTTGA 59.270 37.037 22.70 4.78 38.32 3.02
1119 1138 8.034215 CCATTACCTAGCTAGATTCATCTTGAG 58.966 40.741 22.70 3.15 38.32 3.02
1120 1139 8.584157 CATTACCTAGCTAGATTCATCTTGAGT 58.416 37.037 22.70 8.93 38.32 3.41
1123 1142 6.838612 ACCTAGCTAGATTCATCTTGAGTTCT 59.161 38.462 22.70 0.00 38.32 3.01
1134 1155 4.402056 TCTTGAGTTCTTGACCGAGTTT 57.598 40.909 0.00 0.00 0.00 2.66
1138 1159 2.725206 GAGTTCTTGACCGAGTTTCGTC 59.275 50.000 0.00 0.00 38.40 4.20
1157 1178 1.379710 TGCCGTCATCCATTTGGGG 60.380 57.895 0.00 0.00 37.22 4.96
1162 1183 1.202639 CGTCATCCATTTGGGGATCGA 60.203 52.381 0.00 0.00 45.91 3.59
1163 1184 2.550855 CGTCATCCATTTGGGGATCGAT 60.551 50.000 0.00 0.00 45.91 3.59
1164 1185 3.077359 GTCATCCATTTGGGGATCGATC 58.923 50.000 17.36 17.36 45.91 3.69
1239 1260 2.363147 GCGGTGAGGGAGAGGTCT 60.363 66.667 0.00 0.00 0.00 3.85
1635 1659 2.663188 GTGATCGATCTGGCCCGC 60.663 66.667 25.02 2.20 0.00 6.13
1792 1816 5.100259 TGCTCGAGAGAAACTAATTAACGG 58.900 41.667 18.75 0.00 41.32 4.44
1798 1822 7.816031 TCGAGAGAAACTAATTAACGGAAACAT 59.184 33.333 0.00 0.00 37.03 2.71
1821 1845 1.844003 CGGAATAATCACCGCGACG 59.156 57.895 8.23 0.00 42.55 5.12
1844 1870 1.308069 ATCGGTGCAGTGCATTCCAC 61.308 55.000 22.87 7.66 41.91 4.02
1914 1940 6.599638 AGGTTTATCAATCAAGTAACCTCTGC 59.400 38.462 0.00 0.00 40.91 4.26
1942 1968 2.159814 TGAAAAATAACTGGCGCGTACG 60.160 45.455 11.84 11.84 44.07 3.67
1943 1969 1.431496 AAAATAACTGGCGCGTACGT 58.569 45.000 17.90 0.00 42.83 3.57
1944 1970 2.276472 AAATAACTGGCGCGTACGTA 57.724 45.000 17.90 0.00 42.83 3.57
1945 1971 1.548986 AATAACTGGCGCGTACGTAC 58.451 50.000 17.90 15.90 42.83 3.67
2012 2041 1.153568 GCCGTGAGCAGCAGTCATA 60.154 57.895 0.00 0.00 42.97 2.15
2024 2053 5.649395 AGCAGCAGTCATAATAGCAAGAAAA 59.351 36.000 0.00 0.00 0.00 2.29
2065 2095 7.015682 AGCCAGTATACAATAGTATCTGCTTGT 59.984 37.037 5.50 0.00 41.15 3.16
2072 2102 4.743057 ATAGTATCTGCTTGTGCTGTGA 57.257 40.909 0.00 0.00 40.48 3.58
2073 2103 3.623906 AGTATCTGCTTGTGCTGTGAT 57.376 42.857 0.00 0.00 40.48 3.06
2074 2104 3.529533 AGTATCTGCTTGTGCTGTGATC 58.470 45.455 0.00 0.00 40.48 2.92
2102 2208 0.827507 CTGCTCCTCCTCCTCCTAGC 60.828 65.000 0.00 0.00 0.00 3.42
2111 2217 4.224370 CCTCCTCCTCCTAGCTACTACTAG 59.776 54.167 0.00 0.00 39.54 2.57
2152 2258 9.658475 CATCGTTGAAAACTCTGTAATTAAACA 57.342 29.630 0.00 0.00 46.99 2.83
2153 2259 9.659830 ATCGTTGAAAACTCTGTAATTAAACAC 57.340 29.630 0.00 0.00 46.99 3.32
2271 2377 8.810652 ATACGACAATAATTTGCAAGTTTTGT 57.189 26.923 22.51 22.51 36.22 2.83
2293 2399 7.606858 TGTCATTCAGAAATTCAGACTGATC 57.393 36.000 5.87 1.01 39.78 2.92
2299 2405 4.634883 CAGAAATTCAGACTGATCCCTGTG 59.365 45.833 5.87 0.00 34.07 3.66
2328 2434 2.017049 ACCAGACAAACTCTGTTGTGC 58.983 47.619 0.00 0.00 44.69 4.57
2340 2446 0.257328 TGTTGTGCTCCCCACTCAAA 59.743 50.000 0.00 0.00 44.92 2.69
2348 2454 6.013379 TGTGCTCCCCACTCAAAATTTATAA 58.987 36.000 0.00 0.00 44.92 0.98
2437 2546 5.067805 GCAAAAAGGGAGATAACATGTAGGG 59.932 44.000 0.00 0.00 0.00 3.53
2492 2601 8.373048 AGTCTAATAGAATAGTCTGAGACACG 57.627 38.462 22.65 0.00 39.52 4.49
2504 2613 2.293677 CTGAGACACGTGTAGGACAAGT 59.706 50.000 23.44 0.00 41.34 3.16
2513 2622 4.038282 ACGTGTAGGACAAGTAATCACACA 59.962 41.667 0.00 0.00 38.97 3.72
2514 2623 4.986034 CGTGTAGGACAAGTAATCACACAA 59.014 41.667 0.00 0.00 35.65 3.33
2515 2624 5.118664 CGTGTAGGACAAGTAATCACACAAG 59.881 44.000 0.00 0.00 35.65 3.16
2516 2625 4.994852 TGTAGGACAAGTAATCACACAAGC 59.005 41.667 0.00 0.00 0.00 4.01
2517 2626 4.085357 AGGACAAGTAATCACACAAGCA 57.915 40.909 0.00 0.00 0.00 3.91
2518 2627 3.815401 AGGACAAGTAATCACACAAGCAC 59.185 43.478 0.00 0.00 0.00 4.40
2519 2628 3.563808 GGACAAGTAATCACACAAGCACA 59.436 43.478 0.00 0.00 0.00 4.57
2531 2640 3.126858 ACACAAGCACAAGTACAACACTG 59.873 43.478 0.00 0.00 37.63 3.66
2561 2670 3.507597 CGAGGTTCGTCAACATGGA 57.492 52.632 0.00 0.00 34.72 3.41
2585 2694 3.244561 ACATCCCGAGGCATAATTACAGG 60.245 47.826 0.00 0.00 0.00 4.00
2595 2708 1.789523 TAATTACAGGCGCTCCTCCT 58.210 50.000 7.64 0.00 41.93 3.69
2603 2716 1.076350 AGGCGCTCCTCCTGATATACT 59.924 52.381 7.64 0.00 38.72 2.12
2614 2727 8.586879 TCCTCCTGATATACTGAATCACATAG 57.413 38.462 0.00 0.00 30.38 2.23
2632 2745 8.011844 TCACATAGTACAACTGATGATAAGCT 57.988 34.615 0.00 0.00 0.00 3.74
2640 2753 3.201290 ACTGATGATAAGCTCGCCAAAG 58.799 45.455 0.00 0.00 0.00 2.77
2658 2771 0.329596 AGCCATCAAACAGGTCTCCC 59.670 55.000 0.00 0.00 0.00 4.30
2698 2811 2.577593 GCTACCCCTGTCACGGAC 59.422 66.667 0.00 0.00 0.00 4.79
2728 2841 0.041238 TCCCTCTCGTGATCCCTGTT 59.959 55.000 0.00 0.00 0.00 3.16
2746 2859 5.455326 CCCTGTTTAGCCTATCAGCTTATGT 60.455 44.000 0.00 0.00 41.41 2.29
2769 2882 0.034896 ATCTATTTGGCTACCCCGCG 59.965 55.000 0.00 0.00 35.87 6.46
2805 2918 1.816074 TGCCCGGATTACACTTGTTC 58.184 50.000 0.73 0.00 0.00 3.18
2806 2919 1.092348 GCCCGGATTACACTTGTTCC 58.908 55.000 0.73 0.00 0.00 3.62
2817 2930 2.752903 ACACTTGTTCCACTCAAACACC 59.247 45.455 0.00 0.00 36.41 4.16
2823 2936 3.244770 TGTTCCACTCAAACACCTATCCC 60.245 47.826 0.00 0.00 31.90 3.85
2826 2939 3.263425 TCCACTCAAACACCTATCCCTTC 59.737 47.826 0.00 0.00 0.00 3.46
2853 2966 9.760077 GCTAATTACAAGTCTAATTGTAGCCTA 57.240 33.333 3.59 0.00 44.23 3.93
2858 2971 7.241042 ACAAGTCTAATTGTAGCCTAACTCA 57.759 36.000 0.00 0.00 41.53 3.41
2865 2978 8.195436 TCTAATTGTAGCCTAACTCATACACAC 58.805 37.037 0.00 0.00 0.00 3.82
2874 2987 8.046708 AGCCTAACTCATACACACAATATTTGA 58.953 33.333 5.11 0.00 0.00 2.69
2890 3003 9.296400 ACAATATTTGACACATATTTTAACGCC 57.704 29.630 4.43 0.00 0.00 5.68
2895 3008 2.484651 ACACATATTTTAACGCCGCACA 59.515 40.909 0.00 0.00 0.00 4.57
2896 3009 3.127895 ACACATATTTTAACGCCGCACAT 59.872 39.130 0.00 0.00 0.00 3.21
2897 3010 3.481749 CACATATTTTAACGCCGCACATG 59.518 43.478 0.00 0.00 0.00 3.21
2898 3011 3.375610 ACATATTTTAACGCCGCACATGA 59.624 39.130 0.00 0.00 0.00 3.07
2915 6873 7.487509 CCGCACATGACAATAATTAAATCAACA 59.512 33.333 0.00 0.00 0.00 3.33
2960 6918 7.929245 ACCCAATAACAACATTTAAGTTCAACC 59.071 33.333 0.00 0.00 0.00 3.77
3061 7019 6.819397 ATAACATGAGATCTTCCATGCATG 57.181 37.500 20.19 20.19 42.77 4.06
3074 7032 2.033801 CCATGCATGCCAACTAGCTAAC 59.966 50.000 21.69 0.00 0.00 2.34
3111 7069 1.678627 CGGACTCAGGGTCATAGTCTG 59.321 57.143 1.94 0.00 46.16 3.51
3118 7076 4.279145 TCAGGGTCATAGTCTGGAGTAAC 58.721 47.826 0.00 0.00 0.00 2.50
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.186409 AGCTACAAATTGCAGTCATGGAAAT 59.814 36.000 0.00 0.00 40.42 2.17
1 2 4.523943 AGCTACAAATTGCAGTCATGGAAA 59.476 37.500 0.00 0.00 40.42 3.13
2 3 4.081406 AGCTACAAATTGCAGTCATGGAA 58.919 39.130 0.00 0.00 41.35 3.53
3 4 3.689347 AGCTACAAATTGCAGTCATGGA 58.311 40.909 0.00 0.00 0.00 3.41
4 5 3.441222 TGAGCTACAAATTGCAGTCATGG 59.559 43.478 0.00 0.00 0.00 3.66
5 6 4.690184 TGAGCTACAAATTGCAGTCATG 57.310 40.909 0.00 0.00 0.00 3.07
6 7 5.909621 AATGAGCTACAAATTGCAGTCAT 57.090 34.783 0.00 0.00 0.00 3.06
7 8 6.206438 TGTTAATGAGCTACAAATTGCAGTCA 59.794 34.615 0.00 0.00 0.00 3.41
8 9 6.611381 TGTTAATGAGCTACAAATTGCAGTC 58.389 36.000 0.00 0.00 0.00 3.51
9 10 6.573664 TGTTAATGAGCTACAAATTGCAGT 57.426 33.333 0.00 0.00 0.00 4.40
10 11 8.183536 TGTATGTTAATGAGCTACAAATTGCAG 58.816 33.333 0.00 0.00 0.00 4.41
11 12 7.967854 GTGTATGTTAATGAGCTACAAATTGCA 59.032 33.333 0.00 0.00 0.00 4.08
12 13 8.184192 AGTGTATGTTAATGAGCTACAAATTGC 58.816 33.333 0.00 0.00 0.00 3.56
16 17 9.278978 TGAAAGTGTATGTTAATGAGCTACAAA 57.721 29.630 0.00 0.00 0.00 2.83
17 18 8.840833 TGAAAGTGTATGTTAATGAGCTACAA 57.159 30.769 0.00 0.00 0.00 2.41
18 19 8.479313 CTGAAAGTGTATGTTAATGAGCTACA 57.521 34.615 0.00 0.00 0.00 2.74
37 38 9.918630 ATTCCATAAATTTCACTCAACTGAAAG 57.081 29.630 0.00 0.00 42.13 2.62
38 39 9.912634 GATTCCATAAATTTCACTCAACTGAAA 57.087 29.630 0.00 0.00 42.83 2.69
39 40 8.236586 CGATTCCATAAATTTCACTCAACTGAA 58.763 33.333 0.00 0.00 0.00 3.02
40 41 7.390440 ACGATTCCATAAATTTCACTCAACTGA 59.610 33.333 0.00 0.00 0.00 3.41
41 42 7.530010 ACGATTCCATAAATTTCACTCAACTG 58.470 34.615 0.00 0.00 0.00 3.16
42 43 7.413000 CGACGATTCCATAAATTTCACTCAACT 60.413 37.037 0.00 0.00 0.00 3.16
43 44 6.682863 CGACGATTCCATAAATTTCACTCAAC 59.317 38.462 0.00 0.00 0.00 3.18
44 45 6.592220 TCGACGATTCCATAAATTTCACTCAA 59.408 34.615 0.00 0.00 0.00 3.02
45 46 6.103330 TCGACGATTCCATAAATTTCACTCA 58.897 36.000 0.00 0.00 0.00 3.41
46 47 6.583912 TCGACGATTCCATAAATTTCACTC 57.416 37.500 0.00 0.00 0.00 3.51
47 48 5.006746 GCTCGACGATTCCATAAATTTCACT 59.993 40.000 0.00 0.00 0.00 3.41
48 49 5.198274 GCTCGACGATTCCATAAATTTCAC 58.802 41.667 0.00 0.00 0.00 3.18
49 50 4.873259 TGCTCGACGATTCCATAAATTTCA 59.127 37.500 0.00 0.00 0.00 2.69
50 51 5.403897 TGCTCGACGATTCCATAAATTTC 57.596 39.130 0.00 0.00 0.00 2.17
51 52 4.273480 CCTGCTCGACGATTCCATAAATTT 59.727 41.667 0.00 0.00 0.00 1.82
52 53 3.809832 CCTGCTCGACGATTCCATAAATT 59.190 43.478 0.00 0.00 0.00 1.82
53 54 3.181465 ACCTGCTCGACGATTCCATAAAT 60.181 43.478 0.00 0.00 0.00 1.40
54 55 2.167693 ACCTGCTCGACGATTCCATAAA 59.832 45.455 0.00 0.00 0.00 1.40
55 56 1.754803 ACCTGCTCGACGATTCCATAA 59.245 47.619 0.00 0.00 0.00 1.90
56 57 1.399714 ACCTGCTCGACGATTCCATA 58.600 50.000 0.00 0.00 0.00 2.74
57 58 1.338337 CTACCTGCTCGACGATTCCAT 59.662 52.381 0.00 0.00 0.00 3.41
58 59 0.738975 CTACCTGCTCGACGATTCCA 59.261 55.000 0.00 0.00 0.00 3.53
59 60 1.022735 TCTACCTGCTCGACGATTCC 58.977 55.000 0.00 0.00 0.00 3.01
60 61 2.846039 TTCTACCTGCTCGACGATTC 57.154 50.000 0.00 0.00 0.00 2.52
61 62 3.587797 TTTTCTACCTGCTCGACGATT 57.412 42.857 0.00 0.00 0.00 3.34
62 63 3.802948 ATTTTCTACCTGCTCGACGAT 57.197 42.857 0.00 0.00 0.00 3.73
63 64 4.607955 CATATTTTCTACCTGCTCGACGA 58.392 43.478 0.00 0.00 0.00 4.20
64 65 3.182572 GCATATTTTCTACCTGCTCGACG 59.817 47.826 0.00 0.00 0.00 5.12
65 66 4.119862 TGCATATTTTCTACCTGCTCGAC 58.880 43.478 0.00 0.00 34.02 4.20
66 67 4.400529 TGCATATTTTCTACCTGCTCGA 57.599 40.909 0.00 0.00 34.02 4.04
67 68 4.612259 GCATGCATATTTTCTACCTGCTCG 60.612 45.833 14.21 0.00 34.02 5.03
68 69 4.276678 TGCATGCATATTTTCTACCTGCTC 59.723 41.667 18.46 0.00 34.02 4.26
69 70 4.209538 TGCATGCATATTTTCTACCTGCT 58.790 39.130 18.46 0.00 34.02 4.24
70 71 4.572985 TGCATGCATATTTTCTACCTGC 57.427 40.909 18.46 0.00 0.00 4.85
71 72 6.080648 ACATGCATGCATATTTTCTACCTG 57.919 37.500 31.73 18.75 34.91 4.00
72 73 7.822161 TTACATGCATGCATATTTTCTACCT 57.178 32.000 31.73 4.38 34.91 3.08
73 74 9.480053 AATTTACATGCATGCATATTTTCTACC 57.520 29.630 31.73 0.00 34.91 3.18
82 83 9.214957 GGTAGTAGTAATTTACATGCATGCATA 57.785 33.333 31.73 17.65 34.91 3.14
83 84 7.939039 AGGTAGTAGTAATTTACATGCATGCAT 59.061 33.333 27.46 27.46 37.08 3.96
84 85 7.279615 AGGTAGTAGTAATTTACATGCATGCA 58.720 34.615 26.53 25.04 0.00 3.96
85 86 7.657761 AGAGGTAGTAGTAATTTACATGCATGC 59.342 37.037 26.53 11.82 0.00 4.06
86 87 8.982685 CAGAGGTAGTAGTAATTTACATGCATG 58.017 37.037 25.09 25.09 0.00 4.06
87 88 8.705594 ACAGAGGTAGTAGTAATTTACATGCAT 58.294 33.333 9.15 0.00 0.00 3.96
88 89 8.074613 ACAGAGGTAGTAGTAATTTACATGCA 57.925 34.615 9.15 0.00 0.00 3.96
89 90 8.943909 AACAGAGGTAGTAGTAATTTACATGC 57.056 34.615 9.15 0.00 0.00 4.06
159 160 9.268282 ACTCCCTCTGAAAACTAATATAAGACA 57.732 33.333 0.00 0.00 0.00 3.41
165 166 9.710818 TGTAGTACTCCCTCTGAAAACTAATAT 57.289 33.333 0.00 0.00 0.00 1.28
166 167 8.964772 GTGTAGTACTCCCTCTGAAAACTAATA 58.035 37.037 0.00 0.00 0.00 0.98
167 168 7.362747 CGTGTAGTACTCCCTCTGAAAACTAAT 60.363 40.741 0.00 0.00 0.00 1.73
168 169 6.072286 CGTGTAGTACTCCCTCTGAAAACTAA 60.072 42.308 0.00 0.00 0.00 2.24
169 170 5.413833 CGTGTAGTACTCCCTCTGAAAACTA 59.586 44.000 0.00 0.00 0.00 2.24
170 171 4.217983 CGTGTAGTACTCCCTCTGAAAACT 59.782 45.833 0.00 0.00 0.00 2.66
171 172 4.217118 TCGTGTAGTACTCCCTCTGAAAAC 59.783 45.833 0.00 0.00 0.00 2.43
172 173 4.217118 GTCGTGTAGTACTCCCTCTGAAAA 59.783 45.833 0.00 0.00 0.00 2.29
173 174 3.755378 GTCGTGTAGTACTCCCTCTGAAA 59.245 47.826 0.00 0.00 0.00 2.69
174 175 3.244665 TGTCGTGTAGTACTCCCTCTGAA 60.245 47.826 0.00 0.00 0.00 3.02
175 176 2.303890 TGTCGTGTAGTACTCCCTCTGA 59.696 50.000 0.00 0.00 0.00 3.27
176 177 2.419324 GTGTCGTGTAGTACTCCCTCTG 59.581 54.545 0.00 0.00 0.00 3.35
177 178 2.039480 TGTGTCGTGTAGTACTCCCTCT 59.961 50.000 0.00 0.00 0.00 3.69
178 179 2.430465 TGTGTCGTGTAGTACTCCCTC 58.570 52.381 0.00 0.00 0.00 4.30
179 180 2.574006 TGTGTCGTGTAGTACTCCCT 57.426 50.000 0.00 0.00 0.00 4.20
180 181 3.648339 TTTGTGTCGTGTAGTACTCCC 57.352 47.619 0.00 0.00 0.00 4.30
181 182 6.309737 CCTAAATTTGTGTCGTGTAGTACTCC 59.690 42.308 0.00 0.00 0.00 3.85
182 183 6.183360 GCCTAAATTTGTGTCGTGTAGTACTC 60.183 42.308 0.00 0.00 0.00 2.59
183 184 5.636543 GCCTAAATTTGTGTCGTGTAGTACT 59.363 40.000 0.00 0.00 0.00 2.73
184 185 5.636543 AGCCTAAATTTGTGTCGTGTAGTAC 59.363 40.000 0.00 0.00 0.00 2.73
185 186 5.786311 AGCCTAAATTTGTGTCGTGTAGTA 58.214 37.500 0.00 0.00 0.00 1.82
186 187 4.638304 AGCCTAAATTTGTGTCGTGTAGT 58.362 39.130 0.00 0.00 0.00 2.73
187 188 6.903883 ATAGCCTAAATTTGTGTCGTGTAG 57.096 37.500 0.00 0.00 0.00 2.74
188 189 8.036575 AGTAATAGCCTAAATTTGTGTCGTGTA 58.963 33.333 0.00 0.00 0.00 2.90
189 190 6.877322 AGTAATAGCCTAAATTTGTGTCGTGT 59.123 34.615 0.00 0.00 0.00 4.49
190 191 7.303634 AGTAATAGCCTAAATTTGTGTCGTG 57.696 36.000 0.00 0.00 0.00 4.35
191 192 6.537660 GGAGTAATAGCCTAAATTTGTGTCGT 59.462 38.462 0.00 0.00 0.00 4.34
192 193 6.018180 GGGAGTAATAGCCTAAATTTGTGTCG 60.018 42.308 0.00 0.00 0.00 4.35
193 194 7.054751 AGGGAGTAATAGCCTAAATTTGTGTC 58.945 38.462 0.00 0.00 0.00 3.67
194 195 6.970191 AGGGAGTAATAGCCTAAATTTGTGT 58.030 36.000 0.00 0.00 0.00 3.72
195 196 6.486993 GGAGGGAGTAATAGCCTAAATTTGTG 59.513 42.308 0.00 0.00 0.00 3.33
196 197 6.159751 TGGAGGGAGTAATAGCCTAAATTTGT 59.840 38.462 0.00 0.00 0.00 2.83
197 198 6.601332 TGGAGGGAGTAATAGCCTAAATTTG 58.399 40.000 0.00 0.00 0.00 2.32
198 199 6.841781 TGGAGGGAGTAATAGCCTAAATTT 57.158 37.500 0.00 0.00 0.00 1.82
199 200 6.012421 GGATGGAGGGAGTAATAGCCTAAATT 60.012 42.308 0.00 0.00 0.00 1.82
200 201 5.489278 GGATGGAGGGAGTAATAGCCTAAAT 59.511 44.000 0.00 0.00 0.00 1.40
201 202 4.844655 GGATGGAGGGAGTAATAGCCTAAA 59.155 45.833 0.00 0.00 0.00 1.85
202 203 4.426704 GGATGGAGGGAGTAATAGCCTAA 58.573 47.826 0.00 0.00 0.00 2.69
203 204 3.246021 GGGATGGAGGGAGTAATAGCCTA 60.246 52.174 0.00 0.00 0.00 3.93
204 205 2.495572 GGGATGGAGGGAGTAATAGCCT 60.496 54.545 0.00 0.00 0.00 4.58
205 206 1.909986 GGGATGGAGGGAGTAATAGCC 59.090 57.143 0.00 0.00 0.00 3.93
206 207 2.621070 TGGGATGGAGGGAGTAATAGC 58.379 52.381 0.00 0.00 0.00 2.97
207 208 5.646692 TTTTGGGATGGAGGGAGTAATAG 57.353 43.478 0.00 0.00 0.00 1.73
208 209 7.352522 ACTTATTTTGGGATGGAGGGAGTAATA 59.647 37.037 0.00 0.00 0.00 0.98
209 210 6.162241 ACTTATTTTGGGATGGAGGGAGTAAT 59.838 38.462 0.00 0.00 0.00 1.89
210 211 5.494706 ACTTATTTTGGGATGGAGGGAGTAA 59.505 40.000 0.00 0.00 0.00 2.24
211 212 5.043762 ACTTATTTTGGGATGGAGGGAGTA 58.956 41.667 0.00 0.00 0.00 2.59
212 213 3.858638 ACTTATTTTGGGATGGAGGGAGT 59.141 43.478 0.00 0.00 0.00 3.85
213 214 4.210331 CACTTATTTTGGGATGGAGGGAG 58.790 47.826 0.00 0.00 0.00 4.30
214 215 3.596046 ACACTTATTTTGGGATGGAGGGA 59.404 43.478 0.00 0.00 0.00 4.20
215 216 3.954258 GACACTTATTTTGGGATGGAGGG 59.046 47.826 0.00 0.00 0.00 4.30
216 217 4.860022 AGACACTTATTTTGGGATGGAGG 58.140 43.478 0.00 0.00 0.00 4.30
217 218 7.112779 ACTAAGACACTTATTTTGGGATGGAG 58.887 38.462 0.00 0.00 0.00 3.86
218 219 7.027874 ACTAAGACACTTATTTTGGGATGGA 57.972 36.000 0.00 0.00 0.00 3.41
219 220 8.980481 ATACTAAGACACTTATTTTGGGATGG 57.020 34.615 0.00 0.00 0.00 3.51
247 248 9.490379 CCAAAATAAGTGTCTTAGTACTCAACT 57.510 33.333 0.00 0.00 42.62 3.16
248 249 8.718734 CCCAAAATAAGTGTCTTAGTACTCAAC 58.281 37.037 0.00 0.00 0.00 3.18
249 250 8.653191 TCCCAAAATAAGTGTCTTAGTACTCAA 58.347 33.333 0.00 0.00 0.00 3.02
250 251 8.197592 TCCCAAAATAAGTGTCTTAGTACTCA 57.802 34.615 0.00 0.00 0.00 3.41
255 256 9.462606 CCTTTATCCCAAAATAAGTGTCTTAGT 57.537 33.333 0.00 0.00 0.00 2.24
256 257 8.903820 CCCTTTATCCCAAAATAAGTGTCTTAG 58.096 37.037 0.00 0.00 0.00 2.18
257 258 8.616598 TCCCTTTATCCCAAAATAAGTGTCTTA 58.383 33.333 0.00 0.00 0.00 2.10
258 259 7.475299 TCCCTTTATCCCAAAATAAGTGTCTT 58.525 34.615 0.00 0.00 0.00 3.01
259 260 7.039722 TCCCTTTATCCCAAAATAAGTGTCT 57.960 36.000 0.00 0.00 0.00 3.41
260 261 6.890268 ACTCCCTTTATCCCAAAATAAGTGTC 59.110 38.462 0.00 0.00 0.00 3.67
261 262 6.800890 ACTCCCTTTATCCCAAAATAAGTGT 58.199 36.000 0.00 0.00 0.00 3.55
262 263 7.013369 GCTACTCCCTTTATCCCAAAATAAGTG 59.987 40.741 0.00 0.00 0.00 3.16
263 264 7.061054 GCTACTCCCTTTATCCCAAAATAAGT 58.939 38.462 0.00 0.00 0.00 2.24
264 265 7.060421 TGCTACTCCCTTTATCCCAAAATAAG 58.940 38.462 0.00 0.00 0.00 1.73
265 266 6.975949 TGCTACTCCCTTTATCCCAAAATAA 58.024 36.000 0.00 0.00 0.00 1.40
266 267 6.584471 TGCTACTCCCTTTATCCCAAAATA 57.416 37.500 0.00 0.00 0.00 1.40
267 268 5.466127 TGCTACTCCCTTTATCCCAAAAT 57.534 39.130 0.00 0.00 0.00 1.82
268 269 4.938575 TGCTACTCCCTTTATCCCAAAA 57.061 40.909 0.00 0.00 0.00 2.44
269 270 4.938575 TTGCTACTCCCTTTATCCCAAA 57.061 40.909 0.00 0.00 0.00 3.28
270 271 4.938575 TTTGCTACTCCCTTTATCCCAA 57.061 40.909 0.00 0.00 0.00 4.12
271 272 6.362248 GTTATTTGCTACTCCCTTTATCCCA 58.638 40.000 0.00 0.00 0.00 4.37
272 273 5.469084 CGTTATTTGCTACTCCCTTTATCCC 59.531 44.000 0.00 0.00 0.00 3.85
273 274 5.049612 GCGTTATTTGCTACTCCCTTTATCC 60.050 44.000 0.00 0.00 0.00 2.59
274 275 5.526111 TGCGTTATTTGCTACTCCCTTTATC 59.474 40.000 0.00 0.00 0.00 1.75
275 276 5.433526 TGCGTTATTTGCTACTCCCTTTAT 58.566 37.500 0.00 0.00 0.00 1.40
276 277 4.834534 TGCGTTATTTGCTACTCCCTTTA 58.165 39.130 0.00 0.00 0.00 1.85
277 278 3.681593 TGCGTTATTTGCTACTCCCTTT 58.318 40.909 0.00 0.00 0.00 3.11
278 279 3.343941 TGCGTTATTTGCTACTCCCTT 57.656 42.857 0.00 0.00 0.00 3.95
279 280 3.343941 TTGCGTTATTTGCTACTCCCT 57.656 42.857 0.00 0.00 0.00 4.20
280 281 4.155280 TCTTTTGCGTTATTTGCTACTCCC 59.845 41.667 0.00 0.00 0.00 4.30
281 282 5.291293 TCTTTTGCGTTATTTGCTACTCC 57.709 39.130 0.00 0.00 0.00 3.85
282 283 9.503427 AATTATCTTTTGCGTTATTTGCTACTC 57.497 29.630 0.00 0.00 0.00 2.59
286 287 9.248291 CCATAATTATCTTTTGCGTTATTTGCT 57.752 29.630 0.00 0.00 0.00 3.91
287 288 9.243637 TCCATAATTATCTTTTGCGTTATTTGC 57.756 29.630 0.00 0.00 0.00 3.68
290 291 9.950680 CAGTCCATAATTATCTTTTGCGTTATT 57.049 29.630 0.00 0.00 0.00 1.40
291 292 9.337396 TCAGTCCATAATTATCTTTTGCGTTAT 57.663 29.630 0.00 0.00 0.00 1.89
292 293 8.725405 TCAGTCCATAATTATCTTTTGCGTTA 57.275 30.769 0.00 0.00 0.00 3.18
293 294 7.624360 TCAGTCCATAATTATCTTTTGCGTT 57.376 32.000 0.00 0.00 0.00 4.84
294 295 7.624360 TTCAGTCCATAATTATCTTTTGCGT 57.376 32.000 0.00 0.00 0.00 5.24
295 296 6.634436 GCTTCAGTCCATAATTATCTTTTGCG 59.366 38.462 0.00 0.00 0.00 4.85
296 297 6.920210 GGCTTCAGTCCATAATTATCTTTTGC 59.080 38.462 0.00 0.00 0.00 3.68
297 298 7.999679 TGGCTTCAGTCCATAATTATCTTTTG 58.000 34.615 0.00 0.00 0.00 2.44
298 299 8.773033 ATGGCTTCAGTCCATAATTATCTTTT 57.227 30.769 0.00 0.00 42.20 2.27
299 300 8.223330 AGATGGCTTCAGTCCATAATTATCTTT 58.777 33.333 3.03 0.00 43.90 2.52
300 301 7.664731 CAGATGGCTTCAGTCCATAATTATCTT 59.335 37.037 3.03 0.00 43.90 2.40
301 302 7.166851 CAGATGGCTTCAGTCCATAATTATCT 58.833 38.462 3.03 0.00 43.90 1.98
302 303 6.128063 GCAGATGGCTTCAGTCCATAATTATC 60.128 42.308 3.03 0.00 43.90 1.75
303 304 5.709164 GCAGATGGCTTCAGTCCATAATTAT 59.291 40.000 3.03 0.00 43.90 1.28
304 305 5.065914 GCAGATGGCTTCAGTCCATAATTA 58.934 41.667 3.03 0.00 43.90 1.40
305 306 3.887716 GCAGATGGCTTCAGTCCATAATT 59.112 43.478 3.03 0.00 43.90 1.40
306 307 3.117776 TGCAGATGGCTTCAGTCCATAAT 60.118 43.478 3.03 0.00 43.90 1.28
307 308 2.239402 TGCAGATGGCTTCAGTCCATAA 59.761 45.455 3.03 0.00 43.90 1.90
308 309 1.839354 TGCAGATGGCTTCAGTCCATA 59.161 47.619 3.03 0.00 43.90 2.74
309 310 0.622136 TGCAGATGGCTTCAGTCCAT 59.378 50.000 3.03 3.31 46.35 3.41
310 311 0.622136 ATGCAGATGGCTTCAGTCCA 59.378 50.000 3.03 0.00 45.15 4.02
311 312 1.022735 CATGCAGATGGCTTCAGTCC 58.977 55.000 3.03 0.00 45.15 3.85
312 313 2.034104 TCATGCAGATGGCTTCAGTC 57.966 50.000 3.03 0.00 45.15 3.51
313 314 2.573369 GATCATGCAGATGGCTTCAGT 58.427 47.619 3.03 0.00 45.15 3.41
314 315 1.880675 GGATCATGCAGATGGCTTCAG 59.119 52.381 3.03 0.00 45.15 3.02
315 316 1.812708 CGGATCATGCAGATGGCTTCA 60.813 52.381 3.03 0.00 45.15 3.02
316 317 0.873054 CGGATCATGCAGATGGCTTC 59.127 55.000 0.00 0.00 45.15 3.86
317 318 0.182061 ACGGATCATGCAGATGGCTT 59.818 50.000 0.00 0.00 45.15 4.35
318 319 0.534427 CACGGATCATGCAGATGGCT 60.534 55.000 0.00 0.00 45.15 4.75
319 320 1.947013 CACGGATCATGCAGATGGC 59.053 57.895 0.00 0.00 45.13 4.40
320 321 0.534427 AGCACGGATCATGCAGATGG 60.534 55.000 19.86 0.00 45.92 3.51
321 322 0.586802 CAGCACGGATCATGCAGATG 59.413 55.000 19.86 8.62 45.92 2.90
322 323 1.164662 GCAGCACGGATCATGCAGAT 61.165 55.000 19.86 0.00 45.92 2.90
323 324 1.816679 GCAGCACGGATCATGCAGA 60.817 57.895 19.86 0.00 45.92 4.26
324 325 2.713770 GCAGCACGGATCATGCAG 59.286 61.111 19.86 14.32 45.92 4.41
325 326 2.825387 GGCAGCACGGATCATGCA 60.825 61.111 19.86 0.00 45.92 3.96
326 327 3.945434 CGGCAGCACGGATCATGC 61.945 66.667 12.14 12.14 43.74 4.06
327 328 1.162181 ATTCGGCAGCACGGATCATG 61.162 55.000 0.00 0.00 0.00 3.07
328 329 0.392706 TATTCGGCAGCACGGATCAT 59.607 50.000 0.76 0.00 33.37 2.45
329 330 0.176910 TTATTCGGCAGCACGGATCA 59.823 50.000 0.76 0.00 33.37 2.92
330 331 0.861837 CTTATTCGGCAGCACGGATC 59.138 55.000 0.76 0.00 33.37 3.36
331 332 1.160329 GCTTATTCGGCAGCACGGAT 61.160 55.000 0.00 0.00 35.95 4.18
332 333 1.813753 GCTTATTCGGCAGCACGGA 60.814 57.895 0.00 0.00 35.95 4.69
333 334 2.106074 TGCTTATTCGGCAGCACGG 61.106 57.895 0.00 0.00 41.20 4.94
334 335 3.485110 TGCTTATTCGGCAGCACG 58.515 55.556 0.00 0.00 41.20 5.34
336 337 1.016627 GATGTGCTTATTCGGCAGCA 58.983 50.000 0.00 0.00 43.90 4.41
337 338 1.003116 CAGATGTGCTTATTCGGCAGC 60.003 52.381 0.00 0.00 40.54 5.25
350 351 1.081094 TTGCATCGTCAGCAGATGTG 58.919 50.000 7.83 5.42 45.25 3.21
351 352 1.081892 GTTGCATCGTCAGCAGATGT 58.918 50.000 7.83 0.00 45.25 3.06
352 353 1.326852 GAGTTGCATCGTCAGCAGATG 59.673 52.381 0.00 2.16 45.99 2.90
353 354 1.066645 TGAGTTGCATCGTCAGCAGAT 60.067 47.619 0.00 0.00 43.75 2.90
354 355 0.318120 TGAGTTGCATCGTCAGCAGA 59.682 50.000 0.00 0.00 43.75 4.26
355 356 0.441533 GTGAGTTGCATCGTCAGCAG 59.558 55.000 0.00 0.00 43.75 4.24
356 357 0.249826 TGTGAGTTGCATCGTCAGCA 60.250 50.000 0.00 0.00 40.85 4.41
357 358 0.867746 TTGTGAGTTGCATCGTCAGC 59.132 50.000 0.00 0.00 0.00 4.26
358 359 2.738314 TGATTGTGAGTTGCATCGTCAG 59.262 45.455 0.00 0.00 0.00 3.51
359 360 2.765122 TGATTGTGAGTTGCATCGTCA 58.235 42.857 0.00 0.00 0.00 4.35
360 361 4.142838 TGAATGATTGTGAGTTGCATCGTC 60.143 41.667 0.00 0.00 0.00 4.20
361 362 3.752747 TGAATGATTGTGAGTTGCATCGT 59.247 39.130 0.00 0.00 0.00 3.73
362 363 4.345271 TGAATGATTGTGAGTTGCATCG 57.655 40.909 0.00 0.00 0.00 3.84
363 364 7.434307 CCTAATTGAATGATTGTGAGTTGCATC 59.566 37.037 0.00 0.00 0.00 3.91
364 365 7.123098 TCCTAATTGAATGATTGTGAGTTGCAT 59.877 33.333 0.00 0.00 0.00 3.96
365 366 6.433716 TCCTAATTGAATGATTGTGAGTTGCA 59.566 34.615 0.00 0.00 0.00 4.08
366 367 6.749118 GTCCTAATTGAATGATTGTGAGTTGC 59.251 38.462 0.00 0.00 0.00 4.17
367 368 6.963242 CGTCCTAATTGAATGATTGTGAGTTG 59.037 38.462 0.00 0.00 0.00 3.16
368 369 6.403636 GCGTCCTAATTGAATGATTGTGAGTT 60.404 38.462 0.00 0.00 0.00 3.01
369 370 5.065218 GCGTCCTAATTGAATGATTGTGAGT 59.935 40.000 0.00 0.00 0.00 3.41
370 371 5.504665 GGCGTCCTAATTGAATGATTGTGAG 60.505 44.000 0.00 0.00 0.00 3.51
371 372 4.335315 GGCGTCCTAATTGAATGATTGTGA 59.665 41.667 0.00 0.00 0.00 3.58
372 373 4.096231 TGGCGTCCTAATTGAATGATTGTG 59.904 41.667 0.00 0.00 0.00 3.33
373 374 4.269183 TGGCGTCCTAATTGAATGATTGT 58.731 39.130 0.00 0.00 0.00 2.71
374 375 4.576053 TCTGGCGTCCTAATTGAATGATTG 59.424 41.667 0.00 0.00 0.00 2.67
375 376 4.780815 TCTGGCGTCCTAATTGAATGATT 58.219 39.130 0.00 0.00 0.00 2.57
376 377 4.422073 TCTGGCGTCCTAATTGAATGAT 57.578 40.909 0.00 0.00 0.00 2.45
377 378 3.904800 TCTGGCGTCCTAATTGAATGA 57.095 42.857 0.00 0.00 0.00 2.57
378 379 4.576053 TCATTCTGGCGTCCTAATTGAATG 59.424 41.667 0.00 0.00 40.01 2.67
379 380 4.780815 TCATTCTGGCGTCCTAATTGAAT 58.219 39.130 0.00 0.00 0.00 2.57
380 381 4.214986 TCATTCTGGCGTCCTAATTGAA 57.785 40.909 0.00 0.00 0.00 2.69
381 382 3.904800 TCATTCTGGCGTCCTAATTGA 57.095 42.857 0.00 0.00 0.00 2.57
382 383 5.991606 TCTTATCATTCTGGCGTCCTAATTG 59.008 40.000 0.00 0.00 0.00 2.32
383 384 6.174720 TCTTATCATTCTGGCGTCCTAATT 57.825 37.500 0.00 0.00 0.00 1.40
384 385 5.808366 TCTTATCATTCTGGCGTCCTAAT 57.192 39.130 0.00 0.00 0.00 1.73
385 386 5.607939 TTCTTATCATTCTGGCGTCCTAA 57.392 39.130 0.00 0.00 0.00 2.69
386 387 5.808366 ATTCTTATCATTCTGGCGTCCTA 57.192 39.130 0.00 0.00 0.00 2.94
387 388 4.696479 ATTCTTATCATTCTGGCGTCCT 57.304 40.909 0.00 0.00 0.00 3.85
388 389 6.861065 TTAATTCTTATCATTCTGGCGTCC 57.139 37.500 0.00 0.00 0.00 4.79
390 391 9.950496 AGATATTAATTCTTATCATTCTGGCGT 57.050 29.630 0.00 0.00 0.00 5.68
404 405 9.716556 AGACGGGGATATACAGATATTAATTCT 57.283 33.333 0.00 0.00 0.00 2.40
410 411 9.716556 AGATAAAGACGGGGATATACAGATATT 57.283 33.333 0.00 0.00 0.00 1.28
429 430 9.187455 GACTTTCGCCTCTCTTTATAGATAAAG 57.813 37.037 13.61 13.61 46.59 1.85
430 431 8.915036 AGACTTTCGCCTCTCTTTATAGATAAA 58.085 33.333 0.00 0.00 0.00 1.40
431 432 8.353684 CAGACTTTCGCCTCTCTTTATAGATAA 58.646 37.037 0.00 0.00 0.00 1.75
432 433 7.502895 ACAGACTTTCGCCTCTCTTTATAGATA 59.497 37.037 0.00 0.00 0.00 1.98
433 434 6.322712 ACAGACTTTCGCCTCTCTTTATAGAT 59.677 38.462 0.00 0.00 0.00 1.98
434 435 5.652891 ACAGACTTTCGCCTCTCTTTATAGA 59.347 40.000 0.00 0.00 0.00 1.98
435 436 5.897050 ACAGACTTTCGCCTCTCTTTATAG 58.103 41.667 0.00 0.00 0.00 1.31
436 437 5.916661 ACAGACTTTCGCCTCTCTTTATA 57.083 39.130 0.00 0.00 0.00 0.98
437 438 4.810191 ACAGACTTTCGCCTCTCTTTAT 57.190 40.909 0.00 0.00 0.00 1.40
438 439 4.602340 AACAGACTTTCGCCTCTCTTTA 57.398 40.909 0.00 0.00 0.00 1.85
439 440 3.477210 AACAGACTTTCGCCTCTCTTT 57.523 42.857 0.00 0.00 0.00 2.52
440 441 3.181465 TGAAACAGACTTTCGCCTCTCTT 60.181 43.478 0.00 0.00 0.00 2.85
441 442 2.365617 TGAAACAGACTTTCGCCTCTCT 59.634 45.455 0.00 0.00 0.00 3.10
442 443 2.755650 TGAAACAGACTTTCGCCTCTC 58.244 47.619 0.00 0.00 0.00 3.20
443 444 2.910688 TGAAACAGACTTTCGCCTCT 57.089 45.000 0.00 0.00 0.00 3.69
444 445 3.131396 TCTTGAAACAGACTTTCGCCTC 58.869 45.455 0.00 0.00 0.00 4.70
445 446 3.194005 TCTTGAAACAGACTTTCGCCT 57.806 42.857 0.00 0.00 0.00 5.52
446 447 5.220681 GGATATCTTGAAACAGACTTTCGCC 60.221 44.000 2.05 0.00 0.00 5.54
447 448 5.500931 CGGATATCTTGAAACAGACTTTCGC 60.501 44.000 2.05 0.00 0.00 4.70
448 449 5.005779 CCGGATATCTTGAAACAGACTTTCG 59.994 44.000 0.00 0.00 0.00 3.46
449 450 5.875359 ACCGGATATCTTGAAACAGACTTTC 59.125 40.000 9.46 0.00 0.00 2.62
450 451 5.805728 ACCGGATATCTTGAAACAGACTTT 58.194 37.500 9.46 0.00 0.00 2.66
451 452 5.187967 AGACCGGATATCTTGAAACAGACTT 59.812 40.000 9.46 0.00 0.00 3.01
452 453 4.712337 AGACCGGATATCTTGAAACAGACT 59.288 41.667 9.46 0.00 0.00 3.24
453 454 5.012328 AGACCGGATATCTTGAAACAGAC 57.988 43.478 9.46 0.00 0.00 3.51
454 455 5.677319 AAGACCGGATATCTTGAAACAGA 57.323 39.130 9.46 0.00 35.06 3.41
455 456 5.065218 CCAAAGACCGGATATCTTGAAACAG 59.935 44.000 9.46 0.00 36.52 3.16
456 457 4.941263 CCAAAGACCGGATATCTTGAAACA 59.059 41.667 9.46 0.00 36.52 2.83
457 458 5.183228 TCCAAAGACCGGATATCTTGAAAC 58.817 41.667 9.46 0.00 36.52 2.78
458 459 5.429681 TCCAAAGACCGGATATCTTGAAA 57.570 39.130 9.46 0.00 36.52 2.69
459 460 5.630415 ATCCAAAGACCGGATATCTTGAA 57.370 39.130 9.46 0.00 41.61 2.69
460 461 6.099125 TGTTATCCAAAGACCGGATATCTTGA 59.901 38.462 9.46 2.00 43.43 3.02
461 462 6.288294 TGTTATCCAAAGACCGGATATCTTG 58.712 40.000 9.46 3.99 43.43 3.02
462 463 6.326583 TCTGTTATCCAAAGACCGGATATCTT 59.673 38.462 9.46 3.73 43.43 2.40
463 464 5.839063 TCTGTTATCCAAAGACCGGATATCT 59.161 40.000 9.46 0.00 43.43 1.98
464 465 6.097915 TCTGTTATCCAAAGACCGGATATC 57.902 41.667 9.46 0.00 43.43 1.63
471 472 3.350219 TGCCTCTGTTATCCAAAGACC 57.650 47.619 0.00 0.00 0.00 3.85
483 484 4.584743 TGTAGATTCGACATATGCCTCTGT 59.415 41.667 1.58 0.00 0.00 3.41
488 489 4.142816 GGCATTGTAGATTCGACATATGCC 60.143 45.833 28.08 28.08 44.51 4.40
489 490 4.452114 TGGCATTGTAGATTCGACATATGC 59.548 41.667 22.93 22.93 38.80 3.14
490 491 6.544038 TTGGCATTGTAGATTCGACATATG 57.456 37.500 0.00 0.00 0.00 1.78
491 492 6.936335 TGATTGGCATTGTAGATTCGACATAT 59.064 34.615 0.23 0.00 0.00 1.78
495 496 5.484173 TTGATTGGCATTGTAGATTCGAC 57.516 39.130 0.00 0.00 0.00 4.20
496 497 5.066375 CCTTTGATTGGCATTGTAGATTCGA 59.934 40.000 0.00 0.00 0.00 3.71
497 498 5.276270 CCTTTGATTGGCATTGTAGATTCG 58.724 41.667 0.00 0.00 0.00 3.34
498 499 5.360714 TCCCTTTGATTGGCATTGTAGATTC 59.639 40.000 0.00 0.00 0.00 2.52
499 500 5.271598 TCCCTTTGATTGGCATTGTAGATT 58.728 37.500 0.00 0.00 0.00 2.40
507 509 1.623279 CCCCTTCCCTTTGATTGGCAT 60.623 52.381 0.00 0.00 0.00 4.40
510 512 0.977627 GCCCCCTTCCCTTTGATTGG 60.978 60.000 0.00 0.00 0.00 3.16
566 569 5.745769 GCTAAGACAATTATTTGCTTCTGGC 59.254 40.000 9.02 8.92 42.22 4.85
655 659 3.371034 TGCCTCCAAGCTACATACTGTA 58.629 45.455 0.00 0.00 0.00 2.74
656 660 2.187958 TGCCTCCAAGCTACATACTGT 58.812 47.619 0.00 0.00 0.00 3.55
657 661 2.988010 TGCCTCCAAGCTACATACTG 57.012 50.000 0.00 0.00 0.00 2.74
658 662 2.486191 GCATGCCTCCAAGCTACATACT 60.486 50.000 6.36 0.00 33.14 2.12
659 663 1.876156 GCATGCCTCCAAGCTACATAC 59.124 52.381 6.36 0.00 33.14 2.39
688 692 2.509336 GTCGTGCATGGTCCCGAG 60.509 66.667 5.98 0.00 0.00 4.63
826 830 4.008933 GAGTGAGGCTGGGCACGT 62.009 66.667 0.00 0.00 39.88 4.49
828 832 0.610232 AAATGAGTGAGGCTGGGCAC 60.610 55.000 0.00 0.00 35.30 5.01
838 842 6.348458 CCGAAGAAACATAAGCAAATGAGTGA 60.348 38.462 5.41 0.00 0.00 3.41
848 852 3.058224 ACAAGCACCGAAGAAACATAAGC 60.058 43.478 0.00 0.00 0.00 3.09
968 980 4.630111 AGCTCAGCTGCTAATGAGTTATC 58.370 43.478 9.47 3.11 43.94 1.75
972 984 1.829849 TGAGCTCAGCTGCTAATGAGT 59.170 47.619 13.74 5.96 44.17 3.41
996 1015 3.910627 GCTCCATGGGTATATATAGGGGG 59.089 52.174 13.02 0.00 0.00 5.40
1066 1085 0.098552 TGCGATTGTTGCTAATGGCG 59.901 50.000 9.75 0.00 42.45 5.69
1099 1118 7.288810 AGAACTCAAGATGAATCTAGCTAGG 57.711 40.000 20.58 2.51 35.76 3.02
1104 1123 6.475076 CGGTCAAGAACTCAAGATGAATCTAG 59.525 42.308 0.00 0.00 35.76 2.43
1105 1124 6.152831 TCGGTCAAGAACTCAAGATGAATCTA 59.847 38.462 0.00 0.00 35.76 1.98
1106 1125 5.047021 TCGGTCAAGAACTCAAGATGAATCT 60.047 40.000 0.00 0.00 39.22 2.40
1107 1126 5.171476 TCGGTCAAGAACTCAAGATGAATC 58.829 41.667 0.00 0.00 0.00 2.52
1116 1135 2.100252 ACGAAACTCGGTCAAGAACTCA 59.900 45.455 0.67 0.00 45.59 3.41
1117 1136 2.725206 GACGAAACTCGGTCAAGAACTC 59.275 50.000 0.67 0.00 45.59 3.01
1118 1137 2.361438 AGACGAAACTCGGTCAAGAACT 59.639 45.455 0.67 0.00 45.59 3.01
1119 1138 2.471743 CAGACGAAACTCGGTCAAGAAC 59.528 50.000 0.67 0.00 45.59 3.01
1120 1139 2.739292 CAGACGAAACTCGGTCAAGAA 58.261 47.619 0.67 0.00 45.59 2.52
1123 1142 0.599204 GGCAGACGAAACTCGGTCAA 60.599 55.000 0.67 0.00 45.59 3.18
1138 1159 1.386525 CCCCAAATGGATGACGGCAG 61.387 60.000 0.00 0.00 37.39 4.85
1370 1391 2.730094 CAACAAGGTGCTGGCCAC 59.270 61.111 0.00 0.00 43.90 5.01
1549 1573 1.153745 CGTCGCCCTCCTCTTTCTG 60.154 63.158 0.00 0.00 0.00 3.02
1606 1630 4.832608 GATCACCGACCCGCCCAC 62.833 72.222 0.00 0.00 0.00 4.61
1667 1691 0.955905 GTCTATCTCGTCCTCCAGCC 59.044 60.000 0.00 0.00 0.00 4.85
1792 1816 4.261197 GGTGATTATTCCGCCTGATGTTTC 60.261 45.833 0.00 0.00 0.00 2.78
1798 1822 3.678921 CGGTGATTATTCCGCCTGA 57.321 52.632 0.00 0.00 40.28 3.86
1821 1845 0.523072 AATGCACTGCACCGATCAAC 59.477 50.000 5.67 0.00 43.04 3.18
1844 1870 5.977171 TTATATCGATTCAACCACAACCG 57.023 39.130 1.71 0.00 0.00 4.44
1914 1940 3.670055 CGCCAGTTATTTTTCAAGTGCTG 59.330 43.478 0.00 0.00 0.00 4.41
1942 1968 2.597520 GTTCAGAGGAAGCGACAGTAC 58.402 52.381 0.00 0.00 32.62 2.73
1943 1969 1.544691 GGTTCAGAGGAAGCGACAGTA 59.455 52.381 0.00 0.00 41.18 2.74
1944 1970 0.318762 GGTTCAGAGGAAGCGACAGT 59.681 55.000 0.00 0.00 41.18 3.55
1945 1971 3.129792 GGTTCAGAGGAAGCGACAG 57.870 57.895 0.00 0.00 41.18 3.51
2024 2053 4.494091 ACTGGCTGTAATTAGTGCATCT 57.506 40.909 10.55 0.00 0.00 2.90
2056 2086 2.783609 AGATCACAGCACAAGCAGAT 57.216 45.000 0.00 0.00 45.49 2.90
2065 2095 0.900421 AGCAGCAGTAGATCACAGCA 59.100 50.000 12.59 0.00 41.88 4.41
2072 2102 0.752054 GAGGAGCAGCAGCAGTAGAT 59.248 55.000 3.17 0.00 45.49 1.98
2073 2103 1.326213 GGAGGAGCAGCAGCAGTAGA 61.326 60.000 3.17 0.00 45.49 2.59
2074 2104 1.143620 GGAGGAGCAGCAGCAGTAG 59.856 63.158 3.17 0.00 45.49 2.57
2152 2258 7.649533 TCCATAAATTTGATTGCTGATCAGT 57.350 32.000 23.38 4.19 45.15 3.41
2179 2285 5.627182 AGAACATCTACCATGATTGAGCT 57.373 39.130 0.00 0.00 0.00 4.09
2248 2354 6.754209 TGACAAAACTTGCAAATTATTGTCGT 59.246 30.769 25.40 9.17 44.87 4.34
2249 2355 7.159437 TGACAAAACTTGCAAATTATTGTCG 57.841 32.000 25.40 8.68 44.87 4.35
2250 2356 9.584839 GAATGACAAAACTTGCAAATTATTGTC 57.415 29.630 24.97 24.97 43.22 3.18
2251 2357 9.107177 TGAATGACAAAACTTGCAAATTATTGT 57.893 25.926 15.78 15.78 38.85 2.71
2252 2358 9.588774 CTGAATGACAAAACTTGCAAATTATTG 57.411 29.630 0.00 7.21 39.65 1.90
2253 2359 9.545105 TCTGAATGACAAAACTTGCAAATTATT 57.455 25.926 0.00 0.00 0.00 1.40
2254 2360 9.545105 TTCTGAATGACAAAACTTGCAAATTAT 57.455 25.926 0.00 0.00 0.00 1.28
2255 2361 8.939201 TTCTGAATGACAAAACTTGCAAATTA 57.061 26.923 0.00 0.00 0.00 1.40
2256 2362 7.846644 TTCTGAATGACAAAACTTGCAAATT 57.153 28.000 0.00 0.00 0.00 1.82
2257 2363 7.846644 TTTCTGAATGACAAAACTTGCAAAT 57.153 28.000 0.00 0.00 0.00 2.32
2258 2364 7.846644 ATTTCTGAATGACAAAACTTGCAAA 57.153 28.000 0.00 0.00 0.00 3.68
2261 2367 7.436080 TCTGAATTTCTGAATGACAAAACTTGC 59.564 33.333 3.74 0.00 0.00 4.01
2299 2405 0.582005 GTTTGTCTGGTGCTGTCGTC 59.418 55.000 0.00 0.00 0.00 4.20
2311 2417 2.565841 GGAGCACAACAGAGTTTGTCT 58.434 47.619 0.00 0.00 39.73 3.41
2377 2484 7.639062 ATGTCCCTACATGATTAGGAGAAAT 57.361 36.000 10.31 4.97 44.79 2.17
2413 2520 5.067805 CCCTACATGTTATCTCCCTTTTTGC 59.932 44.000 2.30 0.00 0.00 3.68
2414 2521 6.318900 GTCCCTACATGTTATCTCCCTTTTTG 59.681 42.308 2.30 0.00 0.00 2.44
2415 2522 6.011981 TGTCCCTACATGTTATCTCCCTTTTT 60.012 38.462 2.30 0.00 0.00 1.94
2416 2523 5.491078 TGTCCCTACATGTTATCTCCCTTTT 59.509 40.000 2.30 0.00 0.00 2.27
2417 2524 5.036916 TGTCCCTACATGTTATCTCCCTTT 58.963 41.667 2.30 0.00 0.00 3.11
2437 2546 9.429359 CTATTAGGAATGATACTTCCACATGTC 57.571 37.037 0.00 0.00 46.02 3.06
2466 2575 9.478768 CGTGTCTCAGACTATTCTATTAGACTA 57.521 37.037 6.33 0.00 36.81 2.59
2467 2576 7.988599 ACGTGTCTCAGACTATTCTATTAGACT 59.011 37.037 6.33 0.00 36.81 3.24
2468 2577 8.065407 CACGTGTCTCAGACTATTCTATTAGAC 58.935 40.741 7.58 10.23 36.61 2.59
2469 2578 7.769507 ACACGTGTCTCAGACTATTCTATTAGA 59.230 37.037 17.22 0.00 33.15 2.10
2470 2579 7.921787 ACACGTGTCTCAGACTATTCTATTAG 58.078 38.462 17.22 0.00 33.15 1.73
2471 2580 7.860918 ACACGTGTCTCAGACTATTCTATTA 57.139 36.000 17.22 0.00 33.15 0.98
2472 2581 6.761099 ACACGTGTCTCAGACTATTCTATT 57.239 37.500 17.22 0.00 33.15 1.73
2481 2590 1.878088 TGTCCTACACGTGTCTCAGAC 59.122 52.381 27.16 24.42 0.00 3.51
2483 2592 2.293677 ACTTGTCCTACACGTGTCTCAG 59.706 50.000 27.16 17.13 28.89 3.35
2490 2599 4.038282 TGTGTGATTACTTGTCCTACACGT 59.962 41.667 0.00 0.00 39.66 4.49
2492 2601 5.107065 GCTTGTGTGATTACTTGTCCTACAC 60.107 44.000 0.00 0.00 37.89 2.90
2504 2613 5.586643 TGTTGTACTTGTGCTTGTGTGATTA 59.413 36.000 0.00 0.00 0.00 1.75
2513 2622 4.137116 TCTCAGTGTTGTACTTGTGCTT 57.863 40.909 0.00 0.00 37.60 3.91
2514 2623 3.819564 TCTCAGTGTTGTACTTGTGCT 57.180 42.857 0.00 0.00 37.60 4.40
2515 2624 5.207768 CAAATCTCAGTGTTGTACTTGTGC 58.792 41.667 0.00 0.00 37.60 4.57
2516 2625 6.363577 ACAAATCTCAGTGTTGTACTTGTG 57.636 37.500 0.00 0.00 37.60 3.33
2517 2626 8.395633 GTTAACAAATCTCAGTGTTGTACTTGT 58.604 33.333 0.00 0.00 38.40 3.16
2518 2627 7.582679 CGTTAACAAATCTCAGTGTTGTACTTG 59.417 37.037 6.39 0.00 38.40 3.16
2519 2628 7.493320 TCGTTAACAAATCTCAGTGTTGTACTT 59.507 33.333 6.39 0.00 38.40 2.24
2561 2670 5.338381 CCTGTAATTATGCCTCGGGATGTAT 60.338 44.000 0.00 0.00 0.00 2.29
2569 2678 0.512952 GCGCCTGTAATTATGCCTCG 59.487 55.000 0.00 0.00 0.00 4.63
2570 2679 1.801178 GAGCGCCTGTAATTATGCCTC 59.199 52.381 2.29 0.00 0.00 4.70
2585 2694 2.163509 TCAGTATATCAGGAGGAGCGC 58.836 52.381 0.00 0.00 0.00 5.92
2614 2727 3.491267 GGCGAGCTTATCATCAGTTGTAC 59.509 47.826 0.00 0.00 0.00 2.90
2632 2745 0.597568 CTGTTTGATGGCTTTGGCGA 59.402 50.000 0.00 0.00 39.81 5.54
2698 2811 1.229315 CGAGAGGGACTATCCGGACG 61.229 65.000 6.12 3.09 45.00 4.79
2728 2841 8.657387 AGATTAGACATAAGCTGATAGGCTAA 57.343 34.615 9.84 9.84 42.24 3.09
2741 2854 7.526526 CGGGGTAGCCAAATAGATTAGACATAA 60.527 40.741 14.06 0.00 0.00 1.90
2746 2859 3.007614 GCGGGGTAGCCAAATAGATTAGA 59.992 47.826 14.06 0.00 0.00 2.10
2771 2884 4.041464 TCCGGGCATATTATATAAGGGCA 58.959 43.478 0.00 0.00 0.00 5.36
2805 2918 3.610911 GAAGGGATAGGTGTTTGAGTGG 58.389 50.000 0.00 0.00 0.00 4.00
2806 2919 3.262420 CGAAGGGATAGGTGTTTGAGTG 58.738 50.000 0.00 0.00 0.00 3.51
2817 2930 6.750148 AGACTTGTAATTAGCGAAGGGATAG 58.250 40.000 0.00 0.00 0.00 2.08
2826 2939 7.438459 AGGCTACAATTAGACTTGTAATTAGCG 59.562 37.037 0.00 0.00 41.44 4.26
2853 2966 8.389779 TGTGTCAAATATTGTGTGTATGAGTT 57.610 30.769 0.00 0.00 0.00 3.01
2865 2978 8.468349 CGGCGTTAAAATATGTGTCAAATATTG 58.532 33.333 8.72 0.00 31.98 1.90
2874 2987 2.484651 TGTGCGGCGTTAAAATATGTGT 59.515 40.909 9.37 0.00 0.00 3.72
2890 3003 8.392124 TGTTGATTTAATTATTGTCATGTGCG 57.608 30.769 0.00 0.00 0.00 5.34
3061 7019 5.288952 CGAAAAGTCTAGTTAGCTAGTTGGC 59.711 44.000 12.72 3.69 43.86 4.52
3074 7032 0.739813 CCGCCCACCGAAAAGTCTAG 60.740 60.000 0.00 0.00 40.02 2.43
3086 7044 4.083862 GACCCTGAGTCCGCCCAC 62.084 72.222 0.00 0.00 39.84 4.61
3111 7069 2.618053 CCACGATGGTTCAGTTACTCC 58.382 52.381 0.00 0.00 31.35 3.85
3118 7076 2.401766 GGCAGCCACGATGGTTCAG 61.402 63.158 6.55 0.00 40.46 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.