Multiple sequence alignment - TraesCS7A01G491700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G491700 chr7A 100.000 2588 0 0 1 2588 680418733 680421320 0.000000e+00 4780.0
1 TraesCS7A01G491700 chr7A 82.242 1374 182 23 907 2255 639917692 639919028 0.000000e+00 1129.0
2 TraesCS7A01G491700 chr7A 82.208 1377 180 30 907 2255 639881316 639882655 0.000000e+00 1125.0
3 TraesCS7A01G491700 chr7A 75.219 686 104 32 1646 2325 640001636 640002261 5.490000e-67 265.0
4 TraesCS7A01G491700 chr7A 96.094 128 4 1 1 128 680466487 680466613 9.390000e-50 207.0
5 TraesCS7A01G491700 chr7A 90.164 61 5 1 644 703 639780986 639781046 7.680000e-11 78.7
6 TraesCS7A01G491700 chr7D 89.804 2148 123 37 451 2587 588848269 588850331 0.000000e+00 2665.0
7 TraesCS7A01G491700 chr7D 86.510 1364 91 29 451 1810 588668281 588667007 0.000000e+00 1413.0
8 TraesCS7A01G491700 chr7D 85.006 827 102 11 907 1719 553860497 553859679 0.000000e+00 821.0
9 TraesCS7A01G491700 chr7D 82.581 930 118 19 824 1737 554226088 554225187 0.000000e+00 780.0
10 TraesCS7A01G491700 chr7D 84.650 658 79 9 1664 2316 554228874 554228234 1.010000e-178 636.0
11 TraesCS7A01G491700 chr7D 87.500 384 43 4 1859 2238 554052117 554051735 3.060000e-119 438.0
12 TraesCS7A01G491700 chr7D 92.607 257 18 1 1 257 588829453 588829708 4.070000e-98 368.0
13 TraesCS7A01G491700 chr7D 86.364 264 34 1 2062 2325 554197855 554197594 1.170000e-73 287.0
14 TraesCS7A01G491700 chr7D 88.261 230 24 2 2335 2564 62255606 62255832 3.280000e-69 272.0
15 TraesCS7A01G491700 chr7D 86.175 217 26 3 2112 2327 554199944 554199731 5.570000e-57 231.0
16 TraesCS7A01G491700 chr7D 84.434 212 32 1 1652 1863 554117766 554117556 9.390000e-50 207.0
17 TraesCS7A01G491700 chr7D 78.544 261 19 21 451 709 554354933 554354708 1.250000e-28 137.0
18 TraesCS7A01G491700 chr7D 95.455 44 2 0 166 209 588952490 588952533 1.280000e-08 71.3
19 TraesCS7A01G491700 chr7B 89.937 1749 133 16 821 2564 663257952 663259662 0.000000e+00 2215.0
20 TraesCS7A01G491700 chr7B 83.091 1443 192 25 907 2327 600752469 600753881 0.000000e+00 1266.0
21 TraesCS7A01G491700 chr7B 81.350 1437 206 43 920 2325 600801963 600803368 0.000000e+00 1112.0
22 TraesCS7A01G491700 chr7B 86.828 744 88 3 907 1650 600719932 600720665 0.000000e+00 822.0
23 TraesCS7A01G491700 chr7B 88.764 267 8 10 451 713 663257421 663257669 9.000000e-80 307.0
24 TraesCS7A01G491700 chr7B 97.333 75 1 1 715 789 600478877 600478950 2.700000e-25 126.0
25 TraesCS7A01G491700 chr7B 90.196 51 5 0 659 709 600478415 600478465 1.660000e-07 67.6
26 TraesCS7A01G491700 chr1A 87.446 231 26 3 2335 2564 529593993 529593765 1.970000e-66 263.0
27 TraesCS7A01G491700 chr1A 96.324 136 5 0 248 383 14080506 14080641 9.320000e-55 224.0
28 TraesCS7A01G491700 chr6B 86.441 236 27 4 2330 2564 20320730 20320961 1.190000e-63 254.0
29 TraesCS7A01G491700 chr4A 85.537 242 29 5 2325 2564 397292034 397292271 5.530000e-62 248.0
30 TraesCS7A01G491700 chr5B 84.314 255 33 6 2310 2564 574670660 574670413 2.570000e-60 243.0
31 TraesCS7A01G491700 chr2D 86.026 229 26 4 2335 2563 633225313 633225091 9.250000e-60 241.0
32 TraesCS7A01G491700 chr4B 85.232 237 27 7 2328 2564 149568628 149568856 1.200000e-58 237.0
33 TraesCS7A01G491700 chr4B 96.324 136 5 0 251 386 210282754 210282889 9.320000e-55 224.0
34 TraesCS7A01G491700 chr6A 96.377 138 4 1 255 391 1815031 1814894 2.590000e-55 226.0
35 TraesCS7A01G491700 chr5A 95.652 138 6 0 254 391 77084891 77084754 3.350000e-54 222.0
36 TraesCS7A01G491700 chr5A 95.000 140 7 0 248 387 421833303 421833442 1.210000e-53 220.0
37 TraesCS7A01G491700 chr3B 95.620 137 6 0 252 388 636270249 636270385 1.210000e-53 220.0
38 TraesCS7A01G491700 chrUn 91.772 158 9 4 225 381 183131035 183130881 1.560000e-52 217.0
39 TraesCS7A01G491700 chrUn 91.139 158 10 4 225 381 183183571 183183417 7.260000e-51 211.0
40 TraesCS7A01G491700 chrUn 91.139 158 10 4 225 381 254881334 254881180 7.260000e-51 211.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G491700 chr7A 680418733 680421320 2587 False 4780 4780 100.0000 1 2588 1 chr7A.!!$F5 2587
1 TraesCS7A01G491700 chr7A 639917692 639919028 1336 False 1129 1129 82.2420 907 2255 1 chr7A.!!$F3 1348
2 TraesCS7A01G491700 chr7A 639881316 639882655 1339 False 1125 1125 82.2080 907 2255 1 chr7A.!!$F2 1348
3 TraesCS7A01G491700 chr7A 640001636 640002261 625 False 265 265 75.2190 1646 2325 1 chr7A.!!$F4 679
4 TraesCS7A01G491700 chr7D 588848269 588850331 2062 False 2665 2665 89.8040 451 2587 1 chr7D.!!$F3 2136
5 TraesCS7A01G491700 chr7D 588667007 588668281 1274 True 1413 1413 86.5100 451 1810 1 chr7D.!!$R5 1359
6 TraesCS7A01G491700 chr7D 553859679 553860497 818 True 821 821 85.0060 907 1719 1 chr7D.!!$R1 812
7 TraesCS7A01G491700 chr7D 554225187 554228874 3687 True 708 780 83.6155 824 2316 2 chr7D.!!$R7 1492
8 TraesCS7A01G491700 chr7D 554197594 554199944 2350 True 259 287 86.2695 2062 2327 2 chr7D.!!$R6 265
9 TraesCS7A01G491700 chr7B 600752469 600753881 1412 False 1266 1266 83.0910 907 2327 1 chr7B.!!$F2 1420
10 TraesCS7A01G491700 chr7B 663257421 663259662 2241 False 1261 2215 89.3505 451 2564 2 chr7B.!!$F5 2113
11 TraesCS7A01G491700 chr7B 600801963 600803368 1405 False 1112 1112 81.3500 920 2325 1 chr7B.!!$F3 1405
12 TraesCS7A01G491700 chr7B 600719932 600720665 733 False 822 822 86.8280 907 1650 1 chr7B.!!$F1 743

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
150 151 0.031721 GTCGGCTACCTGGATAACGG 59.968 60.0 0.0 0.0 0.0 4.44 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1733 3722 0.037697 AACAGGTAGATGCGTTCGCA 60.038 50.0 21.44 21.44 45.65 5.1 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 5.784578 ATACACAAAACTTTGGGGAACTC 57.215 39.130 9.16 0.00 45.67 3.01
26 27 2.764010 ACACAAAACTTTGGGGAACTCC 59.236 45.455 9.16 0.00 45.67 3.85
28 29 3.031013 ACAAAACTTTGGGGAACTCCAG 58.969 45.455 7.09 0.00 42.34 3.86
29 30 3.031013 CAAAACTTTGGGGAACTCCAGT 58.969 45.455 0.00 0.00 38.17 4.00
30 31 2.364972 AACTTTGGGGAACTCCAGTG 57.635 50.000 0.00 0.00 38.17 3.66
31 32 1.518367 ACTTTGGGGAACTCCAGTGA 58.482 50.000 0.00 0.00 38.17 3.41
33 34 0.110486 TTTGGGGAACTCCAGTGAGC 59.890 55.000 0.00 0.00 42.74 4.26
34 35 1.059584 TTGGGGAACTCCAGTGAGCA 61.060 55.000 0.00 0.00 42.74 4.26
38 39 1.271597 GGGAACTCCAGTGAGCAACAT 60.272 52.381 0.00 0.00 42.74 2.71
43 44 2.760650 ACTCCAGTGAGCAACATCGATA 59.239 45.455 0.00 0.00 42.74 2.92
44 45 3.386078 ACTCCAGTGAGCAACATCGATAT 59.614 43.478 0.00 0.00 42.74 1.63
46 47 4.769688 TCCAGTGAGCAACATCGATATTT 58.230 39.130 0.00 0.00 0.00 1.40
47 48 4.811024 TCCAGTGAGCAACATCGATATTTC 59.189 41.667 0.00 0.00 0.00 2.17
52 53 8.554528 CAGTGAGCAACATCGATATTTCTTTAT 58.445 33.333 0.00 0.00 0.00 1.40
69 70 7.915293 TTCTTTATTATTCGAGCAAAGGTGA 57.085 32.000 0.00 0.00 0.00 4.02
71 72 6.538742 TCTTTATTATTCGAGCAAAGGTGAGG 59.461 38.462 0.00 0.00 0.00 3.86
73 74 4.811969 TTATTCGAGCAAAGGTGAGGTA 57.188 40.909 0.00 0.00 0.00 3.08
76 77 2.457598 TCGAGCAAAGGTGAGGTAGAT 58.542 47.619 0.00 0.00 0.00 1.98
77 78 3.628008 TCGAGCAAAGGTGAGGTAGATA 58.372 45.455 0.00 0.00 0.00 1.98
79 80 4.038042 TCGAGCAAAGGTGAGGTAGATATG 59.962 45.833 0.00 0.00 0.00 1.78
81 82 2.802816 GCAAAGGTGAGGTAGATATGCG 59.197 50.000 0.00 0.00 0.00 4.73
82 83 3.741388 GCAAAGGTGAGGTAGATATGCGT 60.741 47.826 0.00 0.00 0.00 5.24
84 85 5.597806 CAAAGGTGAGGTAGATATGCGTTA 58.402 41.667 0.00 0.00 0.00 3.18
89 90 5.047943 GGTGAGGTAGATATGCGTTATGTCT 60.048 44.000 6.39 6.39 40.04 3.41
95 96 6.145696 GGTAGATATGCGTTATGTCTGGAAAC 59.854 42.308 9.95 2.79 37.73 2.78
97 98 2.851263 TGCGTTATGTCTGGAAACCT 57.149 45.000 0.00 0.00 0.00 3.50
101 102 3.002348 GCGTTATGTCTGGAAACCTATGC 59.998 47.826 0.00 0.00 0.00 3.14
105 106 1.004277 TGTCTGGAAACCTATGCCCAC 59.996 52.381 0.00 0.00 0.00 4.61
108 109 0.251916 TGGAAACCTATGCCCACGAG 59.748 55.000 0.00 0.00 0.00 4.18
109 110 0.252197 GGAAACCTATGCCCACGAGT 59.748 55.000 0.00 0.00 0.00 4.18
110 111 1.653151 GAAACCTATGCCCACGAGTC 58.347 55.000 0.00 0.00 0.00 3.36
111 112 0.252197 AAACCTATGCCCACGAGTCC 59.748 55.000 0.00 0.00 0.00 3.85
115 116 1.680522 CTATGCCCACGAGTCCTGCT 61.681 60.000 0.00 0.00 0.00 4.24
118 119 3.059982 CCCACGAGTCCTGCTGAA 58.940 61.111 0.00 0.00 0.00 3.02
120 121 1.668294 CCACGAGTCCTGCTGAAGT 59.332 57.895 0.00 0.00 0.00 3.01
123 124 0.753262 ACGAGTCCTGCTGAAGTTGT 59.247 50.000 0.00 0.00 0.00 3.32
125 126 2.563179 ACGAGTCCTGCTGAAGTTGTAT 59.437 45.455 0.00 0.00 0.00 2.29
126 127 2.926200 CGAGTCCTGCTGAAGTTGTATG 59.074 50.000 0.00 0.00 0.00 2.39
130 131 3.815401 GTCCTGCTGAAGTTGTATGTGTT 59.185 43.478 0.00 0.00 0.00 3.32
132 133 3.565482 CCTGCTGAAGTTGTATGTGTTGT 59.435 43.478 0.00 0.00 0.00 3.32
137 138 2.543777 AGTTGTATGTGTTGTCGGCT 57.456 45.000 0.00 0.00 0.00 5.52
141 142 1.897133 TGTATGTGTTGTCGGCTACCT 59.103 47.619 0.00 0.00 0.00 3.08
145 146 0.249398 GTGTTGTCGGCTACCTGGAT 59.751 55.000 0.00 0.00 0.00 3.41
146 147 1.479323 GTGTTGTCGGCTACCTGGATA 59.521 52.381 0.00 0.00 0.00 2.59
148 149 2.093869 TGTTGTCGGCTACCTGGATAAC 60.094 50.000 0.00 0.00 33.89 1.89
150 151 0.031721 GTCGGCTACCTGGATAACGG 59.968 60.000 0.00 0.00 0.00 4.44
151 152 0.396139 TCGGCTACCTGGATAACGGT 60.396 55.000 0.00 0.00 37.31 4.83
152 153 0.462789 CGGCTACCTGGATAACGGTT 59.537 55.000 0.00 0.00 34.76 4.44
153 154 1.682854 CGGCTACCTGGATAACGGTTA 59.317 52.381 0.00 2.62 34.76 2.85
154 155 2.298163 CGGCTACCTGGATAACGGTTAT 59.702 50.000 12.98 12.98 34.76 1.89
159 160 2.132762 CCTGGATAACGGTTATGTCGC 58.867 52.381 17.58 3.78 0.00 5.19
160 161 2.132762 CTGGATAACGGTTATGTCGCC 58.867 52.381 17.58 12.47 0.00 5.54
168 169 1.145377 GTTATGTCGCCGGGGTGAT 59.855 57.895 19.13 13.39 36.98 3.06
198 199 2.460330 CCATGAAGGTGCTCGTCAC 58.540 57.895 0.00 2.71 44.90 3.67
199 200 0.036952 CCATGAAGGTGCTCGTCACT 60.037 55.000 0.00 0.00 44.98 3.41
205 206 2.375766 GGTGCTCGTCACTCGCTTG 61.376 63.158 9.61 0.00 44.98 4.01
208 209 0.249280 TGCTCGTCACTCGCTTGAAA 60.249 50.000 0.00 0.00 39.67 2.69
209 210 0.436531 GCTCGTCACTCGCTTGAAAG 59.563 55.000 0.00 0.00 39.67 2.62
213 214 1.070577 CGTCACTCGCTTGAAAGTTGG 60.071 52.381 0.00 0.00 0.00 3.77
214 215 1.940613 GTCACTCGCTTGAAAGTTGGT 59.059 47.619 0.00 0.00 0.00 3.67
215 216 1.939934 TCACTCGCTTGAAAGTTGGTG 59.060 47.619 0.00 0.00 0.00 4.17
217 218 1.134220 ACTCGCTTGAAAGTTGGTGGA 60.134 47.619 0.00 0.00 0.00 4.02
218 219 1.264288 CTCGCTTGAAAGTTGGTGGAC 59.736 52.381 0.00 0.00 0.00 4.02
219 220 1.021202 CGCTTGAAAGTTGGTGGACA 58.979 50.000 0.00 0.00 0.00 4.02
221 222 2.024414 GCTTGAAAGTTGGTGGACACT 58.976 47.619 2.13 0.00 0.00 3.55
222 223 2.223572 GCTTGAAAGTTGGTGGACACTG 60.224 50.000 2.13 0.00 0.00 3.66
223 224 2.051334 TGAAAGTTGGTGGACACTGG 57.949 50.000 2.13 0.00 0.00 4.00
226 227 0.179018 AAGTTGGTGGACACTGGAGC 60.179 55.000 2.13 0.00 0.00 4.70
229 230 0.108585 TTGGTGGACACTGGAGCTTC 59.891 55.000 2.13 0.00 0.00 3.86
236 237 1.734477 CACTGGAGCTTCGGTCGTG 60.734 63.158 2.47 0.00 0.00 4.35
237 238 2.811317 CTGGAGCTTCGGTCGTGC 60.811 66.667 0.00 3.88 0.00 5.34
238 239 4.373116 TGGAGCTTCGGTCGTGCC 62.373 66.667 0.00 0.00 0.00 5.01
239 240 4.373116 GGAGCTTCGGTCGTGCCA 62.373 66.667 0.00 0.00 36.97 4.92
240 241 2.125512 GAGCTTCGGTCGTGCCAT 60.126 61.111 0.00 0.00 36.97 4.40
241 242 1.741770 GAGCTTCGGTCGTGCCATT 60.742 57.895 0.00 0.00 36.97 3.16
243 244 2.750888 GCTTCGGTCGTGCCATTCC 61.751 63.158 0.39 0.00 36.97 3.01
245 246 3.229156 TTCGGTCGTGCCATTCCGT 62.229 57.895 0.00 0.00 42.95 4.69
246 247 3.186047 CGGTCGTGCCATTCCGTC 61.186 66.667 0.00 0.00 38.45 4.79
247 248 2.264794 GGTCGTGCCATTCCGTCT 59.735 61.111 0.00 0.00 37.17 4.18
249 250 2.100631 GTCGTGCCATTCCGTCTGG 61.101 63.158 0.00 0.00 36.81 3.86
262 263 1.511768 GTCTGGCACGTACTCCCTC 59.488 63.158 0.00 0.00 0.00 4.30
263 264 1.681327 TCTGGCACGTACTCCCTCC 60.681 63.158 0.00 0.00 0.00 4.30
267 268 1.153881 GCACGTACTCCCTCCGTTC 60.154 63.158 0.00 0.00 31.46 3.95
268 269 1.593296 GCACGTACTCCCTCCGTTCT 61.593 60.000 0.00 0.00 31.46 3.01
269 270 0.170561 CACGTACTCCCTCCGTTCTG 59.829 60.000 0.00 0.00 31.46 3.02
270 271 0.037303 ACGTACTCCCTCCGTTCTGA 59.963 55.000 0.00 0.00 0.00 3.27
275 276 3.889520 ACTCCCTCCGTTCTGAATTAC 57.110 47.619 0.00 0.00 0.00 1.89
276 277 3.442076 ACTCCCTCCGTTCTGAATTACT 58.558 45.455 0.00 0.00 0.00 2.24
279 280 3.581332 TCCCTCCGTTCTGAATTACTTGT 59.419 43.478 0.00 0.00 0.00 3.16
280 281 3.933332 CCCTCCGTTCTGAATTACTTGTC 59.067 47.826 0.00 0.00 0.00 3.18
281 282 4.322801 CCCTCCGTTCTGAATTACTTGTCT 60.323 45.833 0.00 0.00 0.00 3.41
284 285 6.531948 CCTCCGTTCTGAATTACTTGTCTTAG 59.468 42.308 0.00 0.00 0.00 2.18
287 288 8.311836 TCCGTTCTGAATTACTTGTCTTAGATT 58.688 33.333 0.00 0.00 0.00 2.40
288 289 8.936864 CCGTTCTGAATTACTTGTCTTAGATTT 58.063 33.333 0.00 0.00 0.00 2.17
301 302 8.515695 TTGTCTTAGATTTGTCTAGATACGGA 57.484 34.615 0.00 0.00 0.00 4.69
303 304 7.228906 TGTCTTAGATTTGTCTAGATACGGAGG 59.771 40.741 0.00 0.00 0.00 4.30
319 320 7.778185 ATACGGAGGTATCTAGCACTAAAAT 57.222 36.000 0.00 0.00 34.18 1.82
320 321 5.844004 ACGGAGGTATCTAGCACTAAAATG 58.156 41.667 0.00 0.00 0.00 2.32
322 323 6.153067 CGGAGGTATCTAGCACTAAAATGAG 58.847 44.000 0.00 0.00 0.00 2.90
323 324 6.239064 CGGAGGTATCTAGCACTAAAATGAGT 60.239 42.308 0.00 0.00 0.00 3.41
324 325 7.149307 GGAGGTATCTAGCACTAAAATGAGTC 58.851 42.308 0.00 0.00 0.00 3.36
325 326 7.014808 GGAGGTATCTAGCACTAAAATGAGTCT 59.985 40.741 0.00 0.00 0.00 3.24
335 336 9.142014 AGCACTAAAATGAGTCTAGATACATCT 57.858 33.333 12.66 0.00 40.86 2.90
355 356 8.311395 ACATCTGTATCTAGACAAATCCAAGA 57.689 34.615 0.00 0.00 0.00 3.02
357 358 7.718334 TCTGTATCTAGACAAATCCAAGACA 57.282 36.000 0.00 0.00 0.00 3.41
359 360 8.593679 TCTGTATCTAGACAAATCCAAGACAAA 58.406 33.333 0.00 0.00 0.00 2.83
360 361 9.388506 CTGTATCTAGACAAATCCAAGACAAAT 57.611 33.333 0.00 0.00 0.00 2.32
367 368 7.538575 AGACAAATCCAAGACAAATAATTCGG 58.461 34.615 0.00 0.00 0.00 4.30
369 370 7.891561 ACAAATCCAAGACAAATAATTCGGAA 58.108 30.769 0.00 0.00 0.00 4.30
387 388 3.294214 GGAACGGAGGGAGTACAAGATA 58.706 50.000 0.00 0.00 0.00 1.98
388 389 3.318557 GGAACGGAGGGAGTACAAGATAG 59.681 52.174 0.00 0.00 0.00 2.08
391 392 2.034812 CGGAGGGAGTACAAGATAGTGC 59.965 54.545 0.00 0.00 0.00 4.40
392 393 2.034812 GGAGGGAGTACAAGATAGTGCG 59.965 54.545 0.00 0.00 0.00 5.34
394 395 1.409427 GGGAGTACAAGATAGTGCGCT 59.591 52.381 9.73 4.58 0.00 5.92
395 396 2.159085 GGGAGTACAAGATAGTGCGCTT 60.159 50.000 9.73 0.00 0.00 4.68
396 397 3.522553 GGAGTACAAGATAGTGCGCTTT 58.477 45.455 9.73 0.00 0.00 3.51
397 398 3.552294 GGAGTACAAGATAGTGCGCTTTC 59.448 47.826 9.73 7.45 0.00 2.62
398 399 4.174009 GAGTACAAGATAGTGCGCTTTCA 58.826 43.478 18.14 0.00 0.00 2.69
403 404 2.622436 AGATAGTGCGCTTTCAAGACC 58.378 47.619 18.14 0.00 0.00 3.85
406 407 0.886490 AGTGCGCTTTCAAGACCAGG 60.886 55.000 9.73 0.00 0.00 4.45
407 408 2.260869 TGCGCTTTCAAGACCAGGC 61.261 57.895 9.73 0.00 0.00 4.85
409 410 1.589716 GCGCTTTCAAGACCAGGCAT 61.590 55.000 0.00 0.00 0.00 4.40
412 413 2.684881 CGCTTTCAAGACCAGGCATATT 59.315 45.455 0.00 0.00 0.00 1.28
413 414 3.488047 CGCTTTCAAGACCAGGCATATTG 60.488 47.826 0.00 0.00 0.00 1.90
417 418 4.299586 TCAAGACCAGGCATATTGTGAA 57.700 40.909 0.00 0.00 0.00 3.18
418 419 4.264253 TCAAGACCAGGCATATTGTGAAG 58.736 43.478 0.00 0.00 0.00 3.02
421 422 3.521126 AGACCAGGCATATTGTGAAGTCT 59.479 43.478 0.00 0.00 0.00 3.24
425 426 6.763355 ACCAGGCATATTGTGAAGTCTATAG 58.237 40.000 0.00 0.00 0.00 1.31
426 427 6.554982 ACCAGGCATATTGTGAAGTCTATAGA 59.445 38.462 0.00 0.00 0.00 1.98
429 430 8.797438 CAGGCATATTGTGAAGTCTATAGAGTA 58.203 37.037 10.55 0.00 0.00 2.59
430 431 9.019656 AGGCATATTGTGAAGTCTATAGAGTAG 57.980 37.037 10.55 0.00 0.00 2.57
431 432 8.247562 GGCATATTGTGAAGTCTATAGAGTAGG 58.752 40.741 10.55 0.00 0.00 3.18
437 438 7.227873 TGTGAAGTCTATAGAGTAGGAGATGG 58.772 42.308 10.55 0.00 0.00 3.51
438 439 6.657541 GTGAAGTCTATAGAGTAGGAGATGGG 59.342 46.154 10.55 0.00 0.00 4.00
440 441 4.542525 AGTCTATAGAGTAGGAGATGGGGG 59.457 50.000 8.40 0.00 0.00 5.40
443 444 0.266152 AGAGTAGGAGATGGGGGTGG 59.734 60.000 0.00 0.00 0.00 4.61
444 445 0.264955 GAGTAGGAGATGGGGGTGGA 59.735 60.000 0.00 0.00 0.00 4.02
445 446 0.952659 AGTAGGAGATGGGGGTGGAT 59.047 55.000 0.00 0.00 0.00 3.41
446 447 1.298382 AGTAGGAGATGGGGGTGGATT 59.702 52.381 0.00 0.00 0.00 3.01
448 449 0.046242 AGGAGATGGGGGTGGATTGA 59.954 55.000 0.00 0.00 0.00 2.57
449 450 0.475906 GGAGATGGGGGTGGATTGAG 59.524 60.000 0.00 0.00 0.00 3.02
584 586 1.064463 GGGATGATGGTTGGCTCTTCA 60.064 52.381 0.00 0.00 0.00 3.02
589 591 0.964358 ATGGTTGGCTCTTCAGCTGC 60.964 55.000 9.47 0.00 46.03 5.25
590 592 1.601759 GGTTGGCTCTTCAGCTGCA 60.602 57.895 9.47 0.00 46.03 4.41
592 594 0.450983 GTTGGCTCTTCAGCTGCATC 59.549 55.000 9.47 0.00 46.03 3.91
594 596 1.449246 GGCTCTTCAGCTGCATCGT 60.449 57.895 9.47 0.00 46.03 3.73
595 597 1.023513 GGCTCTTCAGCTGCATCGTT 61.024 55.000 9.47 0.00 46.03 3.85
596 598 0.373024 GCTCTTCAGCTGCATCGTTC 59.627 55.000 9.47 0.00 43.09 3.95
597 599 2.006056 GCTCTTCAGCTGCATCGTTCT 61.006 52.381 9.47 0.00 43.09 3.01
598 600 2.344950 CTCTTCAGCTGCATCGTTCTT 58.655 47.619 9.47 0.00 0.00 2.52
599 601 2.341257 TCTTCAGCTGCATCGTTCTTC 58.659 47.619 9.47 0.00 0.00 2.87
601 603 0.610174 TCAGCTGCATCGTTCTTCCT 59.390 50.000 9.47 0.00 0.00 3.36
661 663 0.601046 ATGCATGATGGTAGTCGGCG 60.601 55.000 0.00 0.00 0.00 6.46
783 1004 8.362464 TGTATTCTCTTTGTATAGGTCAGTGT 57.638 34.615 0.00 0.00 0.00 3.55
785 1006 9.654663 GTATTCTCTTTGTATAGGTCAGTGTTT 57.345 33.333 0.00 0.00 0.00 2.83
869 2833 0.391263 GGTGAGGCCGGAGTAAACTG 60.391 60.000 5.05 0.00 0.00 3.16
872 2836 0.458025 GAGGCCGGAGTAAACTGACG 60.458 60.000 5.05 0.00 0.00 4.35
896 2860 2.513897 CGGAATCGGCAACTCCCC 60.514 66.667 0.00 0.00 0.00 4.81
902 2866 4.323477 CGGCAACTCCCCGGTCAA 62.323 66.667 0.00 0.00 41.99 3.18
903 2867 2.355115 GGCAACTCCCCGGTCAAT 59.645 61.111 0.00 0.00 0.00 2.57
904 2868 1.304134 GGCAACTCCCCGGTCAATT 60.304 57.895 0.00 0.00 0.00 2.32
905 2869 0.034863 GGCAACTCCCCGGTCAATTA 60.035 55.000 0.00 0.00 0.00 1.40
914 2878 4.571919 TCCCCGGTCAATTAATATAAGCG 58.428 43.478 0.00 8.45 0.00 4.68
989 2954 3.220999 AAGCTGGTACGCGCAGTGA 62.221 57.895 5.73 0.00 43.07 3.41
1254 3231 0.602905 CGGAGAACCCCTGTGTGAAC 60.603 60.000 0.00 0.00 0.00 3.18
1394 3383 0.949105 TTTCAGGGTTTCGCTCTCGC 60.949 55.000 0.00 0.00 35.26 5.03
1468 3457 1.022735 GGAGACTGACGGCGAGATTA 58.977 55.000 16.62 0.00 0.00 1.75
1476 3465 1.153706 CGGCGAGATTAACCCACGT 60.154 57.895 0.00 0.00 0.00 4.49
1528 3517 1.137513 CAAGGACGTTCGACAGGTTC 58.862 55.000 0.00 0.00 0.00 3.62
1532 3521 1.538950 GGACGTTCGACAGGTTCTAGT 59.461 52.381 0.00 0.00 0.00 2.57
1539 3528 4.298103 TCGACAGGTTCTAGTTAGAGGT 57.702 45.455 0.00 0.00 33.21 3.85
1542 3531 6.240894 TCGACAGGTTCTAGTTAGAGGTTTA 58.759 40.000 0.00 0.00 33.21 2.01
1569 3558 9.434420 TTTGGGATTTTTATGTTTGCTTCTATG 57.566 29.630 0.00 0.00 0.00 2.23
1570 3559 7.041107 TGGGATTTTTATGTTTGCTTCTATGC 58.959 34.615 0.00 0.00 0.00 3.14
1573 3562 7.223387 GGATTTTTATGTTTGCTTCTATGCTGG 59.777 37.037 0.00 0.00 0.00 4.85
1574 3563 4.637483 TTATGTTTGCTTCTATGCTGGC 57.363 40.909 0.00 0.00 0.00 4.85
1575 3564 1.908344 TGTTTGCTTCTATGCTGGCA 58.092 45.000 0.00 0.00 0.00 4.92
1576 3565 2.449464 TGTTTGCTTCTATGCTGGCAT 58.551 42.857 12.76 12.76 40.19 4.40
1578 3567 1.302366 TTGCTTCTATGCTGGCATCG 58.698 50.000 11.53 6.07 37.82 3.84
1582 3571 2.869237 GCTTCTATGCTGGCATCGATGA 60.869 50.000 29.20 7.94 37.82 2.92
1583 3572 3.597255 CTTCTATGCTGGCATCGATGAT 58.403 45.455 29.20 14.82 37.82 2.45
1584 3573 2.968675 TCTATGCTGGCATCGATGATG 58.031 47.619 29.20 17.08 42.37 3.07
1586 3575 2.845363 ATGCTGGCATCGATGATGTA 57.155 45.000 29.20 16.02 41.60 2.29
1587 3576 2.618442 TGCTGGCATCGATGATGTAA 57.382 45.000 29.20 7.94 41.60 2.41
1588 3577 3.130280 TGCTGGCATCGATGATGTAAT 57.870 42.857 29.20 0.00 41.60 1.89
1589 3578 3.069289 TGCTGGCATCGATGATGTAATC 58.931 45.455 29.20 8.89 45.83 1.75
1604 3593 6.712241 GATGTAATCGTGGGTTCATCTATG 57.288 41.667 0.00 0.00 31.13 2.23
1605 3594 4.956085 TGTAATCGTGGGTTCATCTATGG 58.044 43.478 0.00 0.00 0.00 2.74
1606 3595 4.651962 TGTAATCGTGGGTTCATCTATGGA 59.348 41.667 0.00 0.00 0.00 3.41
1644 3633 9.758651 ATACGTTTATATTTGACTAGTCATGCA 57.241 29.630 25.68 13.47 39.64 3.96
1645 3634 8.662781 ACGTTTATATTTGACTAGTCATGCAT 57.337 30.769 25.68 18.80 39.64 3.96
1646 3635 8.765219 ACGTTTATATTTGACTAGTCATGCATC 58.235 33.333 25.68 10.82 39.64 3.91
1647 3636 8.982685 CGTTTATATTTGACTAGTCATGCATCT 58.017 33.333 25.68 12.95 39.64 2.90
1652 3641 9.703892 ATATTTGACTAGTCATGCATCTTCTAC 57.296 33.333 25.68 0.00 39.64 2.59
1655 3644 1.845266 AGTCATGCATCTTCTACGCG 58.155 50.000 3.53 3.53 0.00 6.01
1656 3645 0.855349 GTCATGCATCTTCTACGCGG 59.145 55.000 12.47 0.00 0.00 6.46
1657 3646 0.744281 TCATGCATCTTCTACGCGGA 59.256 50.000 12.47 0.00 0.00 5.54
1658 3647 0.855349 CATGCATCTTCTACGCGGAC 59.145 55.000 12.47 0.00 0.00 4.79
1659 3648 0.249489 ATGCATCTTCTACGCGGACC 60.249 55.000 12.47 0.00 0.00 4.46
1661 3650 2.017559 GCATCTTCTACGCGGACCCT 62.018 60.000 12.47 0.00 0.00 4.34
1662 3651 0.460311 CATCTTCTACGCGGACCCTT 59.540 55.000 12.47 0.00 0.00 3.95
1664 3653 1.838112 TCTTCTACGCGGACCCTTAA 58.162 50.000 12.47 0.00 0.00 1.85
1666 3655 2.562298 TCTTCTACGCGGACCCTTAAAA 59.438 45.455 12.47 0.00 0.00 1.52
1667 3656 2.368655 TCTACGCGGACCCTTAAAAC 57.631 50.000 12.47 0.00 0.00 2.43
1669 3658 1.728425 CTACGCGGACCCTTAAAACAC 59.272 52.381 12.47 0.00 0.00 3.32
1670 3659 0.179051 ACGCGGACCCTTAAAACACA 60.179 50.000 12.47 0.00 0.00 3.72
1673 3662 0.236449 CGGACCCTTAAAACACACGC 59.764 55.000 0.00 0.00 0.00 5.34
1674 3663 1.310904 GGACCCTTAAAACACACGCA 58.689 50.000 0.00 0.00 0.00 5.24
1676 3665 2.295070 GGACCCTTAAAACACACGCAAT 59.705 45.455 0.00 0.00 0.00 3.56
1677 3666 3.243602 GGACCCTTAAAACACACGCAATT 60.244 43.478 0.00 0.00 0.00 2.32
1678 3667 4.364860 GACCCTTAAAACACACGCAATTT 58.635 39.130 0.00 0.00 0.00 1.82
1700 3689 3.946907 GACCAAACTGTCCCGACG 58.053 61.111 0.00 0.00 0.00 5.12
1701 3690 2.280592 ACCAAACTGTCCCGACGC 60.281 61.111 0.00 0.00 0.00 5.19
1702 3691 2.280524 CCAAACTGTCCCGACGCA 60.281 61.111 0.00 0.00 0.00 5.24
1703 3692 1.890041 CCAAACTGTCCCGACGCAA 60.890 57.895 0.00 0.00 0.00 4.85
1704 3693 1.234615 CCAAACTGTCCCGACGCAAT 61.235 55.000 0.00 0.00 0.00 3.56
1706 3695 1.001815 CAAACTGTCCCGACGCAATTT 60.002 47.619 0.00 0.00 0.00 1.82
1707 3696 0.591170 AACTGTCCCGACGCAATTTG 59.409 50.000 0.00 0.00 0.00 2.32
1708 3697 0.534203 ACTGTCCCGACGCAATTTGT 60.534 50.000 0.00 0.00 0.00 2.83
1709 3698 0.165944 CTGTCCCGACGCAATTTGTC 59.834 55.000 0.00 0.00 0.00 3.18
1710 3699 0.533085 TGTCCCGACGCAATTTGTCA 60.533 50.000 8.01 0.00 36.11 3.58
1711 3700 0.802494 GTCCCGACGCAATTTGTCAT 59.198 50.000 8.01 0.00 36.11 3.06
1712 3701 1.199097 GTCCCGACGCAATTTGTCATT 59.801 47.619 8.01 0.00 36.11 2.57
1713 3702 2.417239 GTCCCGACGCAATTTGTCATTA 59.583 45.455 8.01 0.00 36.11 1.90
1714 3703 3.075148 TCCCGACGCAATTTGTCATTAA 58.925 40.909 8.01 0.00 36.11 1.40
1715 3704 3.120130 TCCCGACGCAATTTGTCATTAAC 60.120 43.478 8.01 0.00 36.11 2.01
1716 3705 2.837878 CCGACGCAATTTGTCATTAACG 59.162 45.455 8.01 0.00 36.11 3.18
1717 3706 2.272700 CGACGCAATTTGTCATTAACGC 59.727 45.455 8.01 0.00 36.11 4.84
1718 3707 2.238363 ACGCAATTTGTCATTAACGCG 58.762 42.857 3.53 3.53 46.35 6.01
1721 3710 2.592459 GCAATTTGTCATTAACGCGGTC 59.408 45.455 12.47 0.00 0.00 4.79
1723 3712 4.436317 GCAATTTGTCATTAACGCGGTCTA 60.436 41.667 12.47 0.00 0.00 2.59
1724 3713 5.255596 CAATTTGTCATTAACGCGGTCTAG 58.744 41.667 12.47 0.00 0.00 2.43
1725 3714 3.581024 TTGTCATTAACGCGGTCTAGT 57.419 42.857 12.47 0.00 0.00 2.57
1726 3715 4.700268 TTGTCATTAACGCGGTCTAGTA 57.300 40.909 12.47 0.00 0.00 1.82
1727 3716 4.906065 TGTCATTAACGCGGTCTAGTAT 57.094 40.909 12.47 0.00 0.00 2.12
1728 3717 5.252969 TGTCATTAACGCGGTCTAGTATT 57.747 39.130 12.47 0.00 0.00 1.89
1729 3718 5.653507 TGTCATTAACGCGGTCTAGTATTT 58.346 37.500 12.47 0.00 0.00 1.40
1730 3719 5.517411 TGTCATTAACGCGGTCTAGTATTTG 59.483 40.000 12.47 0.00 0.00 2.32
1733 3722 3.863142 AACGCGGTCTAGTATTTGTCT 57.137 42.857 12.47 0.00 0.00 3.41
1735 3724 1.852895 CGCGGTCTAGTATTTGTCTGC 59.147 52.381 0.00 0.00 0.00 4.26
1736 3725 1.852895 GCGGTCTAGTATTTGTCTGCG 59.147 52.381 0.00 0.00 0.00 5.18
1737 3726 2.479049 GCGGTCTAGTATTTGTCTGCGA 60.479 50.000 0.00 0.00 0.00 5.10
1739 3728 3.546670 CGGTCTAGTATTTGTCTGCGAAC 59.453 47.826 0.00 0.00 0.00 3.95
1740 3729 3.546670 GGTCTAGTATTTGTCTGCGAACG 59.453 47.826 0.00 0.00 0.00 3.95
1751 3740 4.496670 GCGAACGCATCTACCTGT 57.503 55.556 14.26 0.00 41.49 4.00
1753 3742 0.645868 GCGAACGCATCTACCTGTTC 59.354 55.000 14.26 0.00 41.49 3.18
1758 3747 2.762745 ACGCATCTACCTGTTCGTTTT 58.237 42.857 0.00 0.00 0.00 2.43
1759 3748 2.735134 ACGCATCTACCTGTTCGTTTTC 59.265 45.455 0.00 0.00 0.00 2.29
1761 3750 2.418976 GCATCTACCTGTTCGTTTTCCC 59.581 50.000 0.00 0.00 0.00 3.97
1762 3751 3.670625 CATCTACCTGTTCGTTTTCCCA 58.329 45.455 0.00 0.00 0.00 4.37
1766 3755 2.448453 ACCTGTTCGTTTTCCCACAAA 58.552 42.857 0.00 0.00 0.00 2.83
1767 3756 3.028130 ACCTGTTCGTTTTCCCACAAAT 58.972 40.909 0.00 0.00 0.00 2.32
1772 3761 4.882427 TGTTCGTTTTCCCACAAATCAGTA 59.118 37.500 0.00 0.00 0.00 2.74
1773 3762 5.008217 TGTTCGTTTTCCCACAAATCAGTAG 59.992 40.000 0.00 0.00 0.00 2.57
1774 3763 3.500680 TCGTTTTCCCACAAATCAGTAGC 59.499 43.478 0.00 0.00 0.00 3.58
1775 3764 3.252215 CGTTTTCCCACAAATCAGTAGCA 59.748 43.478 0.00 0.00 0.00 3.49
1776 3765 4.261405 CGTTTTCCCACAAATCAGTAGCAA 60.261 41.667 0.00 0.00 0.00 3.91
1778 3767 4.846779 TTCCCACAAATCAGTAGCAAAC 57.153 40.909 0.00 0.00 0.00 2.93
1779 3768 3.153919 TCCCACAAATCAGTAGCAAACC 58.846 45.455 0.00 0.00 0.00 3.27
1780 3769 2.890311 CCCACAAATCAGTAGCAAACCA 59.110 45.455 0.00 0.00 0.00 3.67
1781 3770 3.320541 CCCACAAATCAGTAGCAAACCAA 59.679 43.478 0.00 0.00 0.00 3.67
1782 3771 4.549458 CCACAAATCAGTAGCAAACCAAG 58.451 43.478 0.00 0.00 0.00 3.61
1783 3772 4.549458 CACAAATCAGTAGCAAACCAAGG 58.451 43.478 0.00 0.00 0.00 3.61
1786 3775 2.270352 TCAGTAGCAAACCAAGGTGG 57.730 50.000 0.00 0.00 45.02 4.61
1787 3776 0.598065 CAGTAGCAAACCAAGGTGGC 59.402 55.000 7.79 7.79 42.67 5.01
1789 3778 1.203050 AGTAGCAAACCAAGGTGGCAT 60.203 47.619 15.68 6.28 42.67 4.40
1790 3779 1.618343 GTAGCAAACCAAGGTGGCATT 59.382 47.619 15.68 2.37 42.67 3.56
1793 3782 0.945265 CAAACCAAGGTGGCATTGCG 60.945 55.000 1.91 0.00 42.67 4.85
1794 3783 2.098426 AAACCAAGGTGGCATTGCGG 62.098 55.000 1.91 0.00 42.67 5.69
1795 3784 3.762247 CCAAGGTGGCATTGCGGG 61.762 66.667 1.91 0.00 0.00 6.13
1796 3785 2.676121 CAAGGTGGCATTGCGGGA 60.676 61.111 1.91 0.00 0.00 5.14
1798 3787 3.210012 AAGGTGGCATTGCGGGAGT 62.210 57.895 1.91 0.00 0.00 3.85
1800 3789 3.134127 GTGGCATTGCGGGAGTCC 61.134 66.667 0.00 0.00 0.00 3.85
1815 3804 3.691342 TCCGAACCTCCGCCTGTG 61.691 66.667 0.00 0.00 0.00 3.66
1822 3811 2.693762 CCTCCGCCTGTGCATTGTG 61.694 63.158 0.00 0.00 37.32 3.33
1825 3814 1.968017 CCGCCTGTGCATTGTGAGT 60.968 57.895 0.00 0.00 37.32 3.41
1827 3816 1.582968 GCCTGTGCATTGTGAGTGG 59.417 57.895 0.00 0.00 37.47 4.00
1828 3817 1.174712 GCCTGTGCATTGTGAGTGGT 61.175 55.000 0.00 0.00 37.47 4.16
1832 3821 0.884704 GTGCATTGTGAGTGGTCCGT 60.885 55.000 0.00 0.00 0.00 4.69
1834 3823 1.277842 TGCATTGTGAGTGGTCCGTAT 59.722 47.619 0.00 0.00 0.00 3.06
1838 3827 3.478857 TTGTGAGTGGTCCGTATTGTT 57.521 42.857 0.00 0.00 0.00 2.83
1839 3828 3.478857 TGTGAGTGGTCCGTATTGTTT 57.521 42.857 0.00 0.00 0.00 2.83
1841 3830 3.070446 TGTGAGTGGTCCGTATTGTTTCT 59.930 43.478 0.00 0.00 0.00 2.52
1842 3831 3.432252 GTGAGTGGTCCGTATTGTTTCTG 59.568 47.826 0.00 0.00 0.00 3.02
1843 3832 2.415512 GAGTGGTCCGTATTGTTTCTGC 59.584 50.000 0.00 0.00 0.00 4.26
1846 3835 0.096454 GTCCGTATTGTTTCTGCGCC 59.904 55.000 4.18 0.00 0.00 6.53
1847 3836 0.320858 TCCGTATTGTTTCTGCGCCA 60.321 50.000 4.18 0.00 0.00 5.69
1850 3839 2.605823 CCGTATTGTTTCTGCGCCAAAA 60.606 45.455 4.18 2.00 0.00 2.44
1851 3840 2.403698 CGTATTGTTTCTGCGCCAAAAC 59.596 45.455 21.33 21.33 36.21 2.43
1855 3844 2.122167 TTTCTGCGCCAAAACCCGT 61.122 52.632 4.18 0.00 0.00 5.28
1862 3851 3.047735 CCAAAACCCGTGCTTCCC 58.952 61.111 0.00 0.00 0.00 3.97
1864 3853 1.830408 CAAAACCCGTGCTTCCCCA 60.830 57.895 0.00 0.00 0.00 4.96
1866 3855 3.802852 AAACCCGTGCTTCCCCACC 62.803 63.158 0.00 0.00 32.10 4.61
1870 3859 3.322466 CGTGCTTCCCCACCCTCT 61.322 66.667 0.00 0.00 32.10 3.69
1874 3863 1.979155 GCTTCCCCACCCTCTTTGC 60.979 63.158 0.00 0.00 0.00 3.68
1875 3864 1.770324 CTTCCCCACCCTCTTTGCT 59.230 57.895 0.00 0.00 0.00 3.91
1876 3865 0.322906 CTTCCCCACCCTCTTTGCTC 60.323 60.000 0.00 0.00 0.00 4.26
1877 3866 1.789576 TTCCCCACCCTCTTTGCTCC 61.790 60.000 0.00 0.00 0.00 4.70
1878 3867 2.538141 CCCCACCCTCTTTGCTCCA 61.538 63.158 0.00 0.00 0.00 3.86
1879 3868 1.460255 CCCACCCTCTTTGCTCCAA 59.540 57.895 0.00 0.00 0.00 3.53
1880 3869 0.040204 CCCACCCTCTTTGCTCCAAT 59.960 55.000 0.00 0.00 0.00 3.16
1881 3870 1.467920 CCACCCTCTTTGCTCCAATC 58.532 55.000 0.00 0.00 0.00 2.67
1883 3872 2.622452 CCACCCTCTTTGCTCCAATCAT 60.622 50.000 0.00 0.00 0.00 2.45
1884 3873 3.094572 CACCCTCTTTGCTCCAATCATT 58.905 45.455 0.00 0.00 0.00 2.57
1886 3875 3.766051 ACCCTCTTTGCTCCAATCATTTC 59.234 43.478 0.00 0.00 0.00 2.17
1887 3876 3.131755 CCCTCTTTGCTCCAATCATTTCC 59.868 47.826 0.00 0.00 0.00 3.13
1888 3877 3.181493 CCTCTTTGCTCCAATCATTTCCG 60.181 47.826 0.00 0.00 0.00 4.30
1889 3878 2.164219 TCTTTGCTCCAATCATTTCCGC 59.836 45.455 0.00 0.00 0.00 5.54
1890 3879 0.451383 TTGCTCCAATCATTTCCGCG 59.549 50.000 0.00 0.00 0.00 6.46
1891 3880 1.298638 GCTCCAATCATTTCCGCGC 60.299 57.895 0.00 0.00 0.00 6.86
1892 3881 1.356624 CTCCAATCATTTCCGCGCC 59.643 57.895 0.00 0.00 0.00 6.53
1893 3882 1.375853 CTCCAATCATTTCCGCGCCA 61.376 55.000 0.00 0.00 0.00 5.69
1894 3883 0.962855 TCCAATCATTTCCGCGCCAA 60.963 50.000 0.00 0.00 0.00 4.52
1897 3886 0.887933 AATCATTTCCGCGCCAAGTT 59.112 45.000 0.00 0.00 0.00 2.66
1898 3887 0.171007 ATCATTTCCGCGCCAAGTTG 59.829 50.000 0.00 0.00 0.00 3.16
1899 3888 0.886938 TCATTTCCGCGCCAAGTTGA 60.887 50.000 3.87 0.00 0.00 3.18
1900 3889 0.039617 CATTTCCGCGCCAAGTTGAA 60.040 50.000 3.87 0.00 0.00 2.69
1901 3890 0.240945 ATTTCCGCGCCAAGTTGAAG 59.759 50.000 3.87 0.00 0.00 3.02
1910 3899 1.160137 CCAAGTTGAAGCGAGAAGGG 58.840 55.000 3.87 0.00 0.00 3.95
1911 3900 1.160137 CAAGTTGAAGCGAGAAGGGG 58.840 55.000 0.00 0.00 0.00 4.79
1912 3901 0.606673 AAGTTGAAGCGAGAAGGGGC 60.607 55.000 0.00 0.00 0.00 5.80
1913 3902 2.047274 TTGAAGCGAGAAGGGGCG 60.047 61.111 0.00 0.00 0.00 6.13
1919 3908 4.821589 CGAGAAGGGGCGCCAGTC 62.822 72.222 30.85 21.11 0.00 3.51
1922 3911 2.747855 GAAGGGGCGCCAGTCAAG 60.748 66.667 30.85 0.00 0.00 3.02
1925 3914 2.825836 GGGGCGCCAGTCAAGATG 60.826 66.667 30.85 0.00 0.00 2.90
1937 3926 2.611518 GTCAAGATGACGGAGAGGTTG 58.388 52.381 0.00 0.00 37.67 3.77
1939 3928 2.897326 TCAAGATGACGGAGAGGTTGAA 59.103 45.455 0.00 0.00 0.00 2.69
1940 3929 3.056536 TCAAGATGACGGAGAGGTTGAAG 60.057 47.826 0.00 0.00 0.00 3.02
1941 3930 2.808919 AGATGACGGAGAGGTTGAAGA 58.191 47.619 0.00 0.00 0.00 2.87
1942 3931 3.165875 AGATGACGGAGAGGTTGAAGAA 58.834 45.455 0.00 0.00 0.00 2.52
1944 3933 2.036387 TGACGGAGAGGTTGAAGAACA 58.964 47.619 0.00 0.00 33.27 3.18
1954 3943 3.960102 AGGTTGAAGAACATCTTGGCAAA 59.040 39.130 0.00 0.00 36.73 3.68
1955 3944 4.038402 AGGTTGAAGAACATCTTGGCAAAG 59.962 41.667 0.00 0.00 36.73 2.77
1957 3946 5.451798 GGTTGAAGAACATCTTGGCAAAGAA 60.452 40.000 7.83 0.00 45.44 2.52
1958 3947 5.443185 TGAAGAACATCTTGGCAAAGAAG 57.557 39.130 7.83 6.03 45.44 2.85
1959 3948 4.279169 TGAAGAACATCTTGGCAAAGAAGG 59.721 41.667 7.83 5.99 45.44 3.46
1960 3949 4.104383 AGAACATCTTGGCAAAGAAGGA 57.896 40.909 7.83 0.00 45.44 3.36
1961 3950 4.077822 AGAACATCTTGGCAAAGAAGGAG 58.922 43.478 7.83 1.26 45.44 3.69
1965 3954 1.076024 TCTTGGCAAAGAAGGAGGCAT 59.924 47.619 0.00 0.00 39.52 4.40
1966 3955 2.308570 TCTTGGCAAAGAAGGAGGCATA 59.691 45.455 0.00 0.00 39.52 3.14
1968 3957 2.658285 TGGCAAAGAAGGAGGCATATG 58.342 47.619 0.00 0.00 32.54 1.78
1970 3959 2.620585 GGCAAAGAAGGAGGCATATGTC 59.379 50.000 0.00 0.00 0.00 3.06
1971 3960 3.282021 GCAAAGAAGGAGGCATATGTCA 58.718 45.455 10.50 0.00 0.00 3.58
1972 3961 3.696051 GCAAAGAAGGAGGCATATGTCAA 59.304 43.478 10.50 0.00 0.00 3.18
1974 3963 5.678107 GCAAAGAAGGAGGCATATGTCAAAG 60.678 44.000 10.50 0.00 0.00 2.77
1975 3964 3.549794 AGAAGGAGGCATATGTCAAAGC 58.450 45.455 10.50 0.00 0.00 3.51
1976 3965 1.959042 AGGAGGCATATGTCAAAGCG 58.041 50.000 10.50 0.00 0.00 4.68
1977 3966 0.308993 GGAGGCATATGTCAAAGCGC 59.691 55.000 10.50 0.00 0.00 5.92
1978 3967 1.303309 GAGGCATATGTCAAAGCGCT 58.697 50.000 2.64 2.64 0.00 5.92
1980 3969 3.070018 GAGGCATATGTCAAAGCGCTAT 58.930 45.455 12.05 1.74 0.00 2.97
1983 3972 5.248640 AGGCATATGTCAAAGCGCTATAAT 58.751 37.500 12.05 3.15 0.00 1.28
1985 3974 5.106555 GGCATATGTCAAAGCGCTATAATGT 60.107 40.000 12.05 0.00 0.00 2.71
1987 3976 6.566564 GCATATGTCAAAGCGCTATAATGTGT 60.567 38.462 12.05 0.00 0.00 3.72
1988 3977 7.360017 GCATATGTCAAAGCGCTATAATGTGTA 60.360 37.037 12.05 0.00 0.00 2.90
1989 3978 5.966636 TGTCAAAGCGCTATAATGTGTAG 57.033 39.130 12.05 0.00 0.00 2.74
1990 3979 4.270084 TGTCAAAGCGCTATAATGTGTAGC 59.730 41.667 12.05 0.00 40.83 3.58
2003 3992 7.849804 ATAATGTGTAGCGAGAAAAGAATGT 57.150 32.000 0.00 0.00 0.00 2.71
2004 3993 4.990543 TGTGTAGCGAGAAAAGAATGTG 57.009 40.909 0.00 0.00 0.00 3.21
2005 3994 4.627058 TGTGTAGCGAGAAAAGAATGTGA 58.373 39.130 0.00 0.00 0.00 3.58
2008 3997 5.405571 GTGTAGCGAGAAAAGAATGTGAAGA 59.594 40.000 0.00 0.00 0.00 2.87
2009 3998 5.635280 TGTAGCGAGAAAAGAATGTGAAGAG 59.365 40.000 0.00 0.00 0.00 2.85
2010 3999 3.999663 AGCGAGAAAAGAATGTGAAGAGG 59.000 43.478 0.00 0.00 0.00 3.69
2012 4001 4.214332 GCGAGAAAAGAATGTGAAGAGGTT 59.786 41.667 0.00 0.00 0.00 3.50
2013 4002 5.615764 GCGAGAAAAGAATGTGAAGAGGTTC 60.616 44.000 0.00 0.00 0.00 3.62
2014 4003 5.466728 CGAGAAAAGAATGTGAAGAGGTTCA 59.533 40.000 0.00 0.00 40.55 3.18
2016 4005 7.032377 AGAAAAGAATGTGAAGAGGTTCAAC 57.968 36.000 0.00 0.00 44.44 3.18
2017 4006 6.603201 AGAAAAGAATGTGAAGAGGTTCAACA 59.397 34.615 0.00 0.00 44.44 3.33
2018 4007 6.966534 AAAGAATGTGAAGAGGTTCAACAT 57.033 33.333 0.00 0.00 44.44 2.71
2019 4008 6.566197 AAGAATGTGAAGAGGTTCAACATC 57.434 37.500 0.00 0.00 44.44 3.06
2020 4009 5.874093 AGAATGTGAAGAGGTTCAACATCT 58.126 37.500 0.00 0.00 44.44 2.90
2027 4016 3.350833 AGAGGTTCAACATCTTGATGGC 58.649 45.455 14.18 0.93 35.48 4.40
2028 4017 2.086869 AGGTTCAACATCTTGATGGCG 58.913 47.619 14.18 5.61 36.26 5.69
2030 4019 0.810648 TTCAACATCTTGATGGCGGC 59.189 50.000 14.18 0.00 36.26 6.53
2032 4021 0.527113 CAACATCTTGATGGCGGCAA 59.473 50.000 18.31 0.00 0.00 4.52
2034 4023 1.315257 ACATCTTGATGGCGGCAACC 61.315 55.000 18.31 11.90 0.00 3.77
2035 4024 1.001020 ATCTTGATGGCGGCAACCA 60.001 52.632 18.31 14.65 45.82 3.67
2036 4025 0.611618 ATCTTGATGGCGGCAACCAA 60.612 50.000 18.31 20.90 44.65 3.67
2037 4026 1.213537 CTTGATGGCGGCAACCAAG 59.786 57.895 29.04 29.04 44.65 3.61
2039 4028 0.825425 TTGATGGCGGCAACCAAGAA 60.825 50.000 18.31 0.01 44.65 2.52
2040 4029 1.243342 TGATGGCGGCAACCAAGAAG 61.243 55.000 18.31 0.00 44.65 2.85
2041 4030 0.960364 GATGGCGGCAACCAAGAAGA 60.960 55.000 18.31 0.00 44.65 2.87
2044 4033 0.889186 GGCGGCAACCAAGAAGAAGA 60.889 55.000 3.07 0.00 0.00 2.87
2045 4034 1.168714 GCGGCAACCAAGAAGAAGAT 58.831 50.000 0.00 0.00 0.00 2.40
2050 4039 2.163211 GCAACCAAGAAGAAGATCAGCC 59.837 50.000 0.00 0.00 0.00 4.85
2051 4040 3.683802 CAACCAAGAAGAAGATCAGCCT 58.316 45.455 0.00 0.00 0.00 4.58
2054 4043 3.328931 ACCAAGAAGAAGATCAGCCTTGA 59.671 43.478 0.00 0.00 37.81 3.02
2055 4044 4.202503 ACCAAGAAGAAGATCAGCCTTGAA 60.203 41.667 0.00 0.00 36.78 2.69
2057 4046 5.242393 CCAAGAAGAAGATCAGCCTTGAAAA 59.758 40.000 0.00 0.00 36.78 2.29
2130 4206 4.346418 GGATGTTGACCATGAGGAGTAGAT 59.654 45.833 0.00 0.00 38.69 1.98
2143 4219 5.136068 AGGAGTAGATGACTTGGATCTCA 57.864 43.478 0.00 0.00 39.06 3.27
2267 4361 1.002274 AGGAGGAGGAAGCGATGGT 59.998 57.895 0.00 0.00 0.00 3.55
2289 4383 0.176680 AGTGAGCGAAGTGGCATAGG 59.823 55.000 0.00 0.00 34.64 2.57
2306 4400 1.130054 AGGCAGCAAGTCTGGGAAGA 61.130 55.000 0.00 0.00 43.06 2.87
2307 4401 0.250901 GGCAGCAAGTCTGGGAAGAA 60.251 55.000 0.00 0.00 43.06 2.52
2424 4521 8.952278 CACAAAGGCCTTACAAAGTAATACATA 58.048 33.333 20.84 0.00 0.00 2.29
2493 4590 1.076549 GTTGATGAAGGGGGTGCCA 59.923 57.895 0.00 0.00 0.00 4.92
2497 4594 1.203288 TGATGAAGGGGGTGCCAAAAT 60.203 47.619 0.00 0.00 0.00 1.82
2500 4597 1.132881 TGAAGGGGGTGCCAAAATTCT 60.133 47.619 0.00 0.00 0.00 2.40
2524 4621 3.709653 AGCCGAATACCAAATAGACCTCA 59.290 43.478 0.00 0.00 0.00 3.86
2578 4675 2.687935 CCACCAATAGGGATGAAAACGG 59.312 50.000 0.00 0.00 41.15 4.44
2579 4676 3.352648 CACCAATAGGGATGAAAACGGT 58.647 45.455 0.00 0.00 41.15 4.83
2587 4684 1.201414 GGATGAAAACGGTGCGGAAAT 59.799 47.619 0.00 0.00 0.00 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 3.955551 GGAGTTCCCCAAAGTTTTGTGTA 59.044 43.478 4.12 0.00 36.45 2.90
5 6 2.764010 GGAGTTCCCCAAAGTTTTGTGT 59.236 45.455 4.12 0.00 36.45 3.72
9 10 3.031013 CACTGGAGTTCCCCAAAGTTTT 58.969 45.455 0.00 0.00 35.47 2.43
13 14 1.884067 GCTCACTGGAGTTCCCCAAAG 60.884 57.143 0.00 0.00 43.37 2.77
18 19 0.108585 TGTTGCTCACTGGAGTTCCC 59.891 55.000 0.00 0.00 43.37 3.97
22 23 0.969149 TCGATGTTGCTCACTGGAGT 59.031 50.000 0.00 0.00 43.37 3.85
25 26 4.813161 AGAAATATCGATGTTGCTCACTGG 59.187 41.667 9.49 0.00 0.00 4.00
26 27 5.980698 AGAAATATCGATGTTGCTCACTG 57.019 39.130 9.49 0.00 0.00 3.66
43 44 8.956426 TCACCTTTGCTCGAATAATAAAGAAAT 58.044 29.630 0.00 0.00 31.73 2.17
44 45 8.330466 TCACCTTTGCTCGAATAATAAAGAAA 57.670 30.769 0.00 0.00 31.73 2.52
46 47 6.538742 CCTCACCTTTGCTCGAATAATAAAGA 59.461 38.462 0.00 0.00 31.73 2.52
47 48 6.316390 ACCTCACCTTTGCTCGAATAATAAAG 59.684 38.462 0.00 0.00 0.00 1.85
52 53 3.695830 ACCTCACCTTTGCTCGAATAA 57.304 42.857 0.00 0.00 0.00 1.40
54 55 2.832129 TCTACCTCACCTTTGCTCGAAT 59.168 45.455 0.00 0.00 0.00 3.34
55 56 2.244695 TCTACCTCACCTTTGCTCGAA 58.755 47.619 0.00 0.00 0.00 3.71
56 57 1.919240 TCTACCTCACCTTTGCTCGA 58.081 50.000 0.00 0.00 0.00 4.04
57 58 2.969628 ATCTACCTCACCTTTGCTCG 57.030 50.000 0.00 0.00 0.00 5.03
58 59 4.061596 GCATATCTACCTCACCTTTGCTC 58.938 47.826 0.00 0.00 0.00 4.26
59 60 3.493350 CGCATATCTACCTCACCTTTGCT 60.493 47.826 0.00 0.00 0.00 3.91
60 61 2.802816 CGCATATCTACCTCACCTTTGC 59.197 50.000 0.00 0.00 0.00 3.68
61 62 4.060038 ACGCATATCTACCTCACCTTTG 57.940 45.455 0.00 0.00 0.00 2.77
62 63 4.755266 AACGCATATCTACCTCACCTTT 57.245 40.909 0.00 0.00 0.00 3.11
65 66 5.047943 AGACATAACGCATATCTACCTCACC 60.048 44.000 0.00 0.00 0.00 4.02
66 67 5.859114 CAGACATAACGCATATCTACCTCAC 59.141 44.000 0.00 0.00 0.00 3.51
67 68 5.048013 CCAGACATAACGCATATCTACCTCA 60.048 44.000 0.00 0.00 0.00 3.86
69 70 5.077564 TCCAGACATAACGCATATCTACCT 58.922 41.667 0.00 0.00 0.00 3.08
71 72 6.145696 GGTTTCCAGACATAACGCATATCTAC 59.854 42.308 0.00 0.00 0.00 2.59
73 74 5.057149 GGTTTCCAGACATAACGCATATCT 58.943 41.667 0.00 0.00 0.00 1.98
76 77 4.481368 AGGTTTCCAGACATAACGCATA 57.519 40.909 0.00 0.00 0.00 3.14
77 78 3.350219 AGGTTTCCAGACATAACGCAT 57.650 42.857 0.00 0.00 0.00 4.73
79 80 3.002348 GCATAGGTTTCCAGACATAACGC 59.998 47.826 0.00 0.00 0.00 4.84
81 82 3.883489 GGGCATAGGTTTCCAGACATAAC 59.117 47.826 0.00 0.00 0.00 1.89
82 83 3.525609 TGGGCATAGGTTTCCAGACATAA 59.474 43.478 0.00 0.00 0.00 1.90
84 85 1.922447 TGGGCATAGGTTTCCAGACAT 59.078 47.619 0.00 0.00 0.00 3.06
89 90 0.251916 CTCGTGGGCATAGGTTTCCA 59.748 55.000 0.00 0.00 0.00 3.53
95 96 1.443407 CAGGACTCGTGGGCATAGG 59.557 63.158 0.00 0.00 0.00 2.57
97 98 1.685765 AGCAGGACTCGTGGGCATA 60.686 57.895 1.08 0.00 0.00 3.14
101 102 1.079543 CTTCAGCAGGACTCGTGGG 60.080 63.158 1.08 0.00 0.00 4.61
105 106 2.724977 TACAACTTCAGCAGGACTCG 57.275 50.000 0.00 0.00 0.00 4.18
108 109 3.403038 ACACATACAACTTCAGCAGGAC 58.597 45.455 0.00 0.00 0.00 3.85
109 110 3.769739 ACACATACAACTTCAGCAGGA 57.230 42.857 0.00 0.00 0.00 3.86
110 111 3.565482 ACAACACATACAACTTCAGCAGG 59.435 43.478 0.00 0.00 0.00 4.85
111 112 4.609113 CGACAACACATACAACTTCAGCAG 60.609 45.833 0.00 0.00 0.00 4.24
115 116 2.546368 GCCGACAACACATACAACTTCA 59.454 45.455 0.00 0.00 0.00 3.02
118 119 2.543777 AGCCGACAACACATACAACT 57.456 45.000 0.00 0.00 0.00 3.16
120 121 2.300723 AGGTAGCCGACAACACATACAA 59.699 45.455 0.00 0.00 0.00 2.41
123 124 1.206132 CCAGGTAGCCGACAACACATA 59.794 52.381 0.00 0.00 0.00 2.29
125 126 1.116536 TCCAGGTAGCCGACAACACA 61.117 55.000 0.00 0.00 0.00 3.72
126 127 0.249398 ATCCAGGTAGCCGACAACAC 59.751 55.000 0.00 0.00 0.00 3.32
130 131 0.742505 CGTTATCCAGGTAGCCGACA 59.257 55.000 0.00 0.00 0.00 4.35
132 133 0.396139 ACCGTTATCCAGGTAGCCGA 60.396 55.000 0.00 0.00 39.30 5.54
137 138 3.243501 GCGACATAACCGTTATCCAGGTA 60.244 47.826 0.49 0.00 40.37 3.08
141 142 1.536496 CGGCGACATAACCGTTATCCA 60.536 52.381 0.00 0.00 44.46 3.41
150 151 0.878961 GATCACCCCGGCGACATAAC 60.879 60.000 9.30 0.00 0.00 1.89
151 152 1.444250 GATCACCCCGGCGACATAA 59.556 57.895 9.30 0.00 0.00 1.90
152 153 2.852180 CGATCACCCCGGCGACATA 61.852 63.158 9.30 0.00 0.00 2.29
153 154 4.221422 CGATCACCCCGGCGACAT 62.221 66.667 9.30 0.00 0.00 3.06
189 190 0.249280 TTTCAAGCGAGTGACGAGCA 60.249 50.000 7.90 0.00 45.77 4.26
192 193 1.858458 CAACTTTCAAGCGAGTGACGA 59.142 47.619 0.00 0.00 45.77 4.20
195 196 1.939934 CACCAACTTTCAAGCGAGTGA 59.060 47.619 0.00 0.00 0.00 3.41
198 199 1.264288 GTCCACCAACTTTCAAGCGAG 59.736 52.381 0.00 0.00 0.00 5.03
199 200 1.305201 GTCCACCAACTTTCAAGCGA 58.695 50.000 0.00 0.00 0.00 4.93
205 206 2.222027 CTCCAGTGTCCACCAACTTTC 58.778 52.381 0.00 0.00 0.00 2.62
208 209 1.056700 AGCTCCAGTGTCCACCAACT 61.057 55.000 0.00 0.00 0.00 3.16
209 210 0.179018 AAGCTCCAGTGTCCACCAAC 60.179 55.000 0.00 0.00 0.00 3.77
213 214 1.374758 CCGAAGCTCCAGTGTCCAC 60.375 63.158 0.00 0.00 0.00 4.02
214 215 1.816863 GACCGAAGCTCCAGTGTCCA 61.817 60.000 0.00 0.00 0.00 4.02
215 216 1.079750 GACCGAAGCTCCAGTGTCC 60.080 63.158 0.00 0.00 0.00 4.02
217 218 2.201022 ACGACCGAAGCTCCAGTGT 61.201 57.895 0.00 0.00 0.00 3.55
218 219 1.734477 CACGACCGAAGCTCCAGTG 60.734 63.158 0.00 0.00 0.00 3.66
219 220 2.651361 CACGACCGAAGCTCCAGT 59.349 61.111 0.00 0.00 0.00 4.00
221 222 4.373116 GGCACGACCGAAGCTCCA 62.373 66.667 0.00 0.00 0.00 3.86
222 223 3.665675 ATGGCACGACCGAAGCTCC 62.666 63.158 0.00 0.00 43.94 4.70
223 224 1.696832 GAATGGCACGACCGAAGCTC 61.697 60.000 0.00 0.00 43.94 4.09
226 227 2.452813 CGGAATGGCACGACCGAAG 61.453 63.158 19.20 0.00 46.94 3.79
245 246 1.681327 GGAGGGAGTACGTGCCAGA 60.681 63.158 0.00 0.00 39.84 3.86
246 247 2.893398 GGAGGGAGTACGTGCCAG 59.107 66.667 0.00 0.00 39.84 4.85
247 248 3.066190 CGGAGGGAGTACGTGCCA 61.066 66.667 0.00 0.00 39.84 4.92
249 250 1.153881 GAACGGAGGGAGTACGTGC 60.154 63.158 0.00 0.00 41.12 5.34
250 251 0.170561 CAGAACGGAGGGAGTACGTG 59.829 60.000 0.00 0.00 41.12 4.49
253 254 3.889520 AATTCAGAACGGAGGGAGTAC 57.110 47.619 0.00 0.00 0.00 2.73
255 256 3.442076 AGTAATTCAGAACGGAGGGAGT 58.558 45.455 0.00 0.00 0.00 3.85
259 260 4.822026 AGACAAGTAATTCAGAACGGAGG 58.178 43.478 0.00 0.00 0.00 4.30
262 263 8.480643 AATCTAAGACAAGTAATTCAGAACGG 57.519 34.615 0.00 0.00 0.00 4.44
263 264 9.746711 CAAATCTAAGACAAGTAATTCAGAACG 57.253 33.333 0.00 0.00 0.00 3.95
275 276 8.622157 TCCGTATCTAGACAAATCTAAGACAAG 58.378 37.037 0.00 0.00 36.98 3.16
276 277 8.515695 TCCGTATCTAGACAAATCTAAGACAA 57.484 34.615 0.00 0.00 36.98 3.18
279 280 7.288560 ACCTCCGTATCTAGACAAATCTAAGA 58.711 38.462 0.00 0.00 36.98 2.10
280 281 7.513371 ACCTCCGTATCTAGACAAATCTAAG 57.487 40.000 0.00 0.00 36.98 2.18
281 282 9.228949 GATACCTCCGTATCTAGACAAATCTAA 57.771 37.037 0.00 0.00 45.11 2.10
297 298 5.597182 TCATTTTAGTGCTAGATACCTCCGT 59.403 40.000 0.00 0.00 0.00 4.69
298 299 6.085555 TCATTTTAGTGCTAGATACCTCCG 57.914 41.667 0.00 0.00 0.00 4.63
299 300 7.014808 AGACTCATTTTAGTGCTAGATACCTCC 59.985 40.741 0.00 0.00 0.00 4.30
301 302 7.906199 AGACTCATTTTAGTGCTAGATACCT 57.094 36.000 0.00 0.00 0.00 3.08
309 310 9.142014 AGATGTATCTAGACTCATTTTAGTGCT 57.858 33.333 11.25 2.44 34.85 4.40
310 311 9.190858 CAGATGTATCTAGACTCATTTTAGTGC 57.809 37.037 11.25 0.69 34.85 4.40
331 332 8.200120 TGTCTTGGATTTGTCTAGATACAGATG 58.800 37.037 0.00 0.00 0.00 2.90
333 334 7.718334 TGTCTTGGATTTGTCTAGATACAGA 57.282 36.000 0.00 0.00 0.00 3.41
334 335 8.777865 TTTGTCTTGGATTTGTCTAGATACAG 57.222 34.615 0.00 0.00 0.00 2.74
340 341 9.708222 CGAATTATTTGTCTTGGATTTGTCTAG 57.292 33.333 0.00 0.00 0.00 2.43
341 342 8.673711 CCGAATTATTTGTCTTGGATTTGTCTA 58.326 33.333 0.00 0.00 0.00 2.59
342 343 7.393234 TCCGAATTATTTGTCTTGGATTTGTCT 59.607 33.333 0.00 0.00 0.00 3.41
343 344 7.535139 TCCGAATTATTTGTCTTGGATTTGTC 58.465 34.615 0.00 0.00 0.00 3.18
344 345 7.461182 TCCGAATTATTTGTCTTGGATTTGT 57.539 32.000 0.00 0.00 0.00 2.83
345 346 7.008266 CGTTCCGAATTATTTGTCTTGGATTTG 59.992 37.037 0.00 0.00 0.00 2.32
346 347 7.027161 CGTTCCGAATTATTTGTCTTGGATTT 58.973 34.615 0.00 0.00 0.00 2.17
347 348 6.404293 CCGTTCCGAATTATTTGTCTTGGATT 60.404 38.462 0.00 0.00 0.00 3.01
348 349 5.065988 CCGTTCCGAATTATTTGTCTTGGAT 59.934 40.000 0.00 0.00 0.00 3.41
350 351 4.393680 TCCGTTCCGAATTATTTGTCTTGG 59.606 41.667 0.00 0.00 0.00 3.61
351 352 5.447279 CCTCCGTTCCGAATTATTTGTCTTG 60.447 44.000 0.00 0.00 0.00 3.02
352 353 4.634443 CCTCCGTTCCGAATTATTTGTCTT 59.366 41.667 0.00 0.00 0.00 3.01
353 354 4.189231 CCTCCGTTCCGAATTATTTGTCT 58.811 43.478 0.00 0.00 0.00 3.41
355 356 3.054948 TCCCTCCGTTCCGAATTATTTGT 60.055 43.478 0.00 0.00 0.00 2.83
357 358 3.199289 ACTCCCTCCGTTCCGAATTATTT 59.801 43.478 0.00 0.00 0.00 1.40
359 360 2.395619 ACTCCCTCCGTTCCGAATTAT 58.604 47.619 0.00 0.00 0.00 1.28
360 361 1.856629 ACTCCCTCCGTTCCGAATTA 58.143 50.000 0.00 0.00 0.00 1.40
364 365 0.251297 TTGTACTCCCTCCGTTCCGA 60.251 55.000 0.00 0.00 0.00 4.55
365 366 0.172803 CTTGTACTCCCTCCGTTCCG 59.827 60.000 0.00 0.00 0.00 4.30
367 368 3.952967 ACTATCTTGTACTCCCTCCGTTC 59.047 47.826 0.00 0.00 0.00 3.95
369 370 3.288964 CACTATCTTGTACTCCCTCCGT 58.711 50.000 0.00 0.00 0.00 4.69
371 372 2.034812 CGCACTATCTTGTACTCCCTCC 59.965 54.545 0.00 0.00 0.00 4.30
372 373 2.544069 GCGCACTATCTTGTACTCCCTC 60.544 54.545 0.30 0.00 0.00 4.30
374 375 1.409427 AGCGCACTATCTTGTACTCCC 59.591 52.381 11.47 0.00 0.00 4.30
375 376 2.873133 AGCGCACTATCTTGTACTCC 57.127 50.000 11.47 0.00 0.00 3.85
376 377 4.174009 TGAAAGCGCACTATCTTGTACTC 58.826 43.478 11.47 0.00 0.00 2.59
377 378 4.188247 TGAAAGCGCACTATCTTGTACT 57.812 40.909 11.47 0.00 0.00 2.73
378 379 4.625742 TCTTGAAAGCGCACTATCTTGTAC 59.374 41.667 11.47 0.00 0.00 2.90
379 380 4.625742 GTCTTGAAAGCGCACTATCTTGTA 59.374 41.667 11.47 0.00 0.00 2.41
381 382 3.181516 GGTCTTGAAAGCGCACTATCTTG 60.182 47.826 11.47 0.00 0.00 3.02
382 383 3.003480 GGTCTTGAAAGCGCACTATCTT 58.997 45.455 11.47 0.00 0.00 2.40
387 388 0.886490 CCTGGTCTTGAAAGCGCACT 60.886 55.000 11.47 0.00 0.00 4.40
388 389 1.576421 CCTGGTCTTGAAAGCGCAC 59.424 57.895 11.47 0.51 0.00 5.34
391 392 1.737838 TATGCCTGGTCTTGAAAGCG 58.262 50.000 0.00 0.00 0.00 4.68
392 393 3.445096 ACAATATGCCTGGTCTTGAAAGC 59.555 43.478 0.00 0.00 0.00 3.51
394 395 4.661222 TCACAATATGCCTGGTCTTGAAA 58.339 39.130 0.00 0.00 0.00 2.69
395 396 4.299586 TCACAATATGCCTGGTCTTGAA 57.700 40.909 0.00 0.00 0.00 2.69
396 397 3.998913 TCACAATATGCCTGGTCTTGA 57.001 42.857 0.00 0.00 0.00 3.02
397 398 4.012374 ACTTCACAATATGCCTGGTCTTG 58.988 43.478 0.00 0.00 0.00 3.02
398 399 4.018960 AGACTTCACAATATGCCTGGTCTT 60.019 41.667 0.00 0.00 0.00 3.01
403 404 7.665690 ACTCTATAGACTTCACAATATGCCTG 58.334 38.462 0.00 0.00 0.00 4.85
406 407 9.015367 TCCTACTCTATAGACTTCACAATATGC 57.985 37.037 0.00 0.00 0.00 3.14
412 413 7.227873 CCATCTCCTACTCTATAGACTTCACA 58.772 42.308 0.00 0.00 0.00 3.58
413 414 6.657541 CCCATCTCCTACTCTATAGACTTCAC 59.342 46.154 0.00 0.00 0.00 3.18
417 418 4.542525 CCCCCATCTCCTACTCTATAGACT 59.457 50.000 0.00 0.00 0.00 3.24
418 419 4.292836 ACCCCCATCTCCTACTCTATAGAC 59.707 50.000 0.00 0.00 0.00 2.59
421 422 3.336997 CCACCCCCATCTCCTACTCTATA 59.663 52.174 0.00 0.00 0.00 1.31
425 426 0.264955 TCCACCCCCATCTCCTACTC 59.735 60.000 0.00 0.00 0.00 2.59
426 427 0.952659 ATCCACCCCCATCTCCTACT 59.047 55.000 0.00 0.00 0.00 2.57
429 430 0.046242 TCAATCCACCCCCATCTCCT 59.954 55.000 0.00 0.00 0.00 3.69
430 431 0.475906 CTCAATCCACCCCCATCTCC 59.524 60.000 0.00 0.00 0.00 3.71
431 432 1.141858 GTCTCAATCCACCCCCATCTC 59.858 57.143 0.00 0.00 0.00 2.75
437 438 1.078426 CACCGTCTCAATCCACCCC 60.078 63.158 0.00 0.00 0.00 4.95
438 439 1.745489 GCACCGTCTCAATCCACCC 60.745 63.158 0.00 0.00 0.00 4.61
440 441 1.009829 GATGCACCGTCTCAATCCAC 58.990 55.000 0.00 0.00 0.00 4.02
443 444 1.203928 CGAGATGCACCGTCTCAATC 58.796 55.000 14.51 0.00 44.21 2.67
444 445 0.179100 CCGAGATGCACCGTCTCAAT 60.179 55.000 14.51 0.00 44.21 2.57
445 446 1.215382 CCGAGATGCACCGTCTCAA 59.785 57.895 14.51 0.00 44.21 3.02
446 447 2.710902 CCCGAGATGCACCGTCTCA 61.711 63.158 14.51 0.00 44.21 3.27
448 449 4.148825 GCCCGAGATGCACCGTCT 62.149 66.667 0.00 0.00 31.77 4.18
449 450 3.740128 ATGCCCGAGATGCACCGTC 62.740 63.158 0.00 0.00 42.38 4.79
503 505 4.143333 CAGTAGTCACCCGGCCCG 62.143 72.222 0.00 0.00 0.00 6.13
504 506 4.468689 GCAGTAGTCACCCGGCCC 62.469 72.222 0.00 0.00 0.00 5.80
505 507 4.814294 CGCAGTAGTCACCCGGCC 62.814 72.222 0.00 0.00 0.00 6.13
506 508 4.814294 CCGCAGTAGTCACCCGGC 62.814 72.222 0.00 0.00 34.56 6.13
507 509 4.814294 GCCGCAGTAGTCACCCGG 62.814 72.222 0.00 0.00 40.90 5.73
558 560 1.479205 GCCAACCATCATCCCAGCATA 60.479 52.381 0.00 0.00 0.00 3.14
584 586 0.610174 TGAGGAAGAACGATGCAGCT 59.390 50.000 0.00 0.00 0.00 4.24
589 591 3.775202 AGAACGATGAGGAAGAACGATG 58.225 45.455 0.00 0.00 0.00 3.84
590 592 4.158764 AGAAGAACGATGAGGAAGAACGAT 59.841 41.667 0.00 0.00 0.00 3.73
592 594 3.839293 AGAAGAACGATGAGGAAGAACG 58.161 45.455 0.00 0.00 0.00 3.95
594 596 5.946972 ACTAGAGAAGAACGATGAGGAAGAA 59.053 40.000 0.00 0.00 0.00 2.52
595 597 5.355630 CACTAGAGAAGAACGATGAGGAAGA 59.644 44.000 0.00 0.00 0.00 2.87
596 598 5.449862 CCACTAGAGAAGAACGATGAGGAAG 60.450 48.000 0.00 0.00 0.00 3.46
597 599 4.399618 CCACTAGAGAAGAACGATGAGGAA 59.600 45.833 0.00 0.00 0.00 3.36
598 600 3.948473 CCACTAGAGAAGAACGATGAGGA 59.052 47.826 0.00 0.00 0.00 3.71
599 601 3.697045 ACCACTAGAGAAGAACGATGAGG 59.303 47.826 0.00 0.00 0.00 3.86
601 603 5.944599 AGTAACCACTAGAGAAGAACGATGA 59.055 40.000 0.00 0.00 31.45 2.92
672 674 2.224209 CGGATACCTTTATGCTTCCGGT 60.224 50.000 0.00 0.00 41.74 5.28
794 1015 6.258068 CGAGAAGAAAAAGTACAAAGGTGAGT 59.742 38.462 0.00 0.00 0.00 3.41
797 1018 6.359480 ACGAGAAGAAAAAGTACAAAGGTG 57.641 37.500 0.00 0.00 0.00 4.00
801 1022 7.223387 GGACTGTACGAGAAGAAAAAGTACAAA 59.777 37.037 7.91 0.00 44.40 2.83
803 1024 6.211515 GGACTGTACGAGAAGAAAAAGTACA 58.788 40.000 6.58 6.58 43.36 2.90
808 1029 4.572985 TCGGACTGTACGAGAAGAAAAA 57.427 40.909 11.78 0.00 35.12 1.94
809 1030 4.572985 TTCGGACTGTACGAGAAGAAAA 57.427 40.909 15.50 0.00 41.81 2.29
810 1031 4.380233 GGATTCGGACTGTACGAGAAGAAA 60.380 45.833 15.50 0.00 41.81 2.52
811 1032 3.128242 GGATTCGGACTGTACGAGAAGAA 59.872 47.826 15.50 0.29 41.81 2.52
812 1033 2.681848 GGATTCGGACTGTACGAGAAGA 59.318 50.000 15.50 0.70 41.81 2.87
814 1035 2.719739 AGGATTCGGACTGTACGAGAA 58.280 47.619 15.50 1.90 41.81 2.87
815 1036 2.414994 AGGATTCGGACTGTACGAGA 57.585 50.000 15.50 7.41 41.81 4.04
816 1037 4.832590 ATTAGGATTCGGACTGTACGAG 57.167 45.455 15.50 0.00 41.81 4.18
817 1038 5.125900 TCAAATTAGGATTCGGACTGTACGA 59.874 40.000 11.78 11.78 38.78 3.43
866 2830 0.739561 GATTCCGACTAGCCGTCAGT 59.260 55.000 0.00 0.00 42.98 3.41
869 2833 1.008767 CCGATTCCGACTAGCCGTC 60.009 63.158 0.00 0.00 39.33 4.79
872 2836 1.143183 TTGCCGATTCCGACTAGCC 59.857 57.895 0.00 0.00 38.22 3.93
896 2860 4.092968 GCCTCCGCTTATATTAATTGACCG 59.907 45.833 0.00 0.00 0.00 4.79
902 2866 3.192001 TCGACGCCTCCGCTTATATTAAT 59.808 43.478 0.00 0.00 38.22 1.40
903 2867 2.553602 TCGACGCCTCCGCTTATATTAA 59.446 45.455 0.00 0.00 38.22 1.40
904 2868 2.153645 TCGACGCCTCCGCTTATATTA 58.846 47.619 0.00 0.00 38.22 0.98
905 2869 0.956633 TCGACGCCTCCGCTTATATT 59.043 50.000 0.00 0.00 38.22 1.28
914 2878 1.970917 CTTTGTGCATCGACGCCTCC 61.971 60.000 0.00 0.00 0.00 4.30
1368 3357 1.145803 CGAAACCCTGAAACTCGACC 58.854 55.000 0.00 0.00 0.00 4.79
1394 3383 1.444553 GTGTGGAGAGACGGCGAAG 60.445 63.158 16.62 0.00 0.00 3.79
1501 3490 2.515057 AACGTCCTTGCCGTTGCA 60.515 55.556 0.00 0.00 45.89 4.08
1564 3553 2.301009 ACATCATCGATGCCAGCATAGA 59.699 45.455 20.81 16.17 43.15 1.98
1565 3554 2.696506 ACATCATCGATGCCAGCATAG 58.303 47.619 20.81 5.72 43.15 2.23
1567 3556 2.845363 TACATCATCGATGCCAGCAT 57.155 45.000 20.81 4.45 43.15 3.79
1568 3557 2.618442 TTACATCATCGATGCCAGCA 57.382 45.000 20.81 3.17 43.15 4.41
1569 3558 3.736530 GATTACATCATCGATGCCAGC 57.263 47.619 20.81 1.48 43.15 4.85
1578 3567 5.300752 AGATGAACCCACGATTACATCATC 58.699 41.667 0.00 0.00 41.07 2.92
1582 3571 5.306937 TCCATAGATGAACCCACGATTACAT 59.693 40.000 0.00 0.00 0.00 2.29
1583 3572 4.651962 TCCATAGATGAACCCACGATTACA 59.348 41.667 0.00 0.00 0.00 2.41
1584 3573 5.209818 TCCATAGATGAACCCACGATTAC 57.790 43.478 0.00 0.00 0.00 1.89
1586 3575 4.982241 ATCCATAGATGAACCCACGATT 57.018 40.909 0.00 0.00 0.00 3.34
1619 3608 9.758651 ATGCATGACTAGTCAAATATAAACGTA 57.241 29.630 28.43 9.09 43.58 3.57
1620 3609 8.662781 ATGCATGACTAGTCAAATATAAACGT 57.337 30.769 28.43 6.08 43.58 3.99
1627 3616 7.862873 CGTAGAAGATGCATGACTAGTCAAATA 59.137 37.037 28.43 17.19 43.58 1.40
1628 3617 6.699204 CGTAGAAGATGCATGACTAGTCAAAT 59.301 38.462 28.43 20.89 43.58 2.32
1629 3618 6.036470 CGTAGAAGATGCATGACTAGTCAAA 58.964 40.000 28.43 17.37 43.58 2.69
1631 3620 4.498177 GCGTAGAAGATGCATGACTAGTCA 60.498 45.833 27.07 27.07 44.59 3.41
1632 3621 3.978217 GCGTAGAAGATGCATGACTAGTC 59.022 47.826 16.32 16.32 40.11 2.59
1634 3623 2.976509 CGCGTAGAAGATGCATGACTAG 59.023 50.000 2.46 0.00 40.42 2.57
1636 3625 1.536922 CCGCGTAGAAGATGCATGACT 60.537 52.381 2.46 2.90 40.42 3.41
1637 3626 0.855349 CCGCGTAGAAGATGCATGAC 59.145 55.000 2.46 0.00 40.42 3.06
1639 3628 0.855349 GTCCGCGTAGAAGATGCATG 59.145 55.000 2.46 0.00 40.42 4.06
1641 3630 1.141019 GGTCCGCGTAGAAGATGCA 59.859 57.895 4.92 0.00 40.42 3.96
1642 3631 1.591863 GGGTCCGCGTAGAAGATGC 60.592 63.158 4.92 0.00 36.65 3.91
1644 3633 2.062971 TAAGGGTCCGCGTAGAAGAT 57.937 50.000 4.92 0.00 0.00 2.40
1645 3634 1.838112 TTAAGGGTCCGCGTAGAAGA 58.162 50.000 4.92 0.00 0.00 2.87
1646 3635 2.660189 TTTAAGGGTCCGCGTAGAAG 57.340 50.000 4.92 0.00 0.00 2.85
1647 3636 2.036992 TGTTTTAAGGGTCCGCGTAGAA 59.963 45.455 4.92 0.00 0.00 2.10
1648 3637 1.617850 TGTTTTAAGGGTCCGCGTAGA 59.382 47.619 4.92 0.00 0.00 2.59
1649 3638 1.728425 GTGTTTTAAGGGTCCGCGTAG 59.272 52.381 4.92 0.00 0.00 3.51
1652 3641 0.236449 GTGTGTTTTAAGGGTCCGCG 59.764 55.000 0.00 0.00 0.00 6.46
1655 3644 1.310904 TGCGTGTGTTTTAAGGGTCC 58.689 50.000 0.00 0.00 0.00 4.46
1656 3645 3.636282 ATTGCGTGTGTTTTAAGGGTC 57.364 42.857 0.00 0.00 0.00 4.46
1657 3646 4.394439 AAATTGCGTGTGTTTTAAGGGT 57.606 36.364 0.00 0.00 0.00 4.34
1658 3647 5.726729 AAAAATTGCGTGTGTTTTAAGGG 57.273 34.783 0.00 0.00 0.00 3.95
1683 3672 2.315386 GCGTCGGGACAGTTTGGTC 61.315 63.158 0.00 0.00 37.06 4.02
1685 3674 1.234615 ATTGCGTCGGGACAGTTTGG 61.235 55.000 0.00 0.00 0.00 3.28
1689 3678 0.534203 ACAAATTGCGTCGGGACAGT 60.534 50.000 0.00 0.00 0.00 3.55
1690 3679 0.165944 GACAAATTGCGTCGGGACAG 59.834 55.000 0.00 0.00 0.00 3.51
1692 3681 0.802494 ATGACAAATTGCGTCGGGAC 59.198 50.000 0.00 0.00 36.11 4.46
1695 3684 2.837878 CGTTAATGACAAATTGCGTCGG 59.162 45.455 0.00 0.00 36.11 4.79
1696 3685 2.272700 GCGTTAATGACAAATTGCGTCG 59.727 45.455 0.00 0.00 36.11 5.12
1697 3686 2.272700 CGCGTTAATGACAAATTGCGTC 59.727 45.455 0.00 2.08 39.52 5.19
1698 3687 2.238363 CGCGTTAATGACAAATTGCGT 58.762 42.857 0.00 0.00 39.52 5.24
1700 3689 2.591133 ACCGCGTTAATGACAAATTGC 58.409 42.857 4.92 0.00 0.00 3.56
1701 3690 4.078363 AGACCGCGTTAATGACAAATTG 57.922 40.909 4.92 0.00 0.00 2.32
1702 3691 4.933400 ACTAGACCGCGTTAATGACAAATT 59.067 37.500 4.92 0.00 0.00 1.82
1703 3692 4.501071 ACTAGACCGCGTTAATGACAAAT 58.499 39.130 4.92 0.00 0.00 2.32
1704 3693 3.916761 ACTAGACCGCGTTAATGACAAA 58.083 40.909 4.92 0.00 0.00 2.83
1706 3695 4.906065 ATACTAGACCGCGTTAATGACA 57.094 40.909 4.92 0.00 0.00 3.58
1707 3696 5.517770 ACAAATACTAGACCGCGTTAATGAC 59.482 40.000 4.92 0.00 0.00 3.06
1708 3697 5.653507 ACAAATACTAGACCGCGTTAATGA 58.346 37.500 4.92 0.00 0.00 2.57
1709 3698 5.747197 AGACAAATACTAGACCGCGTTAATG 59.253 40.000 4.92 0.00 0.00 1.90
1710 3699 5.747197 CAGACAAATACTAGACCGCGTTAAT 59.253 40.000 4.92 0.00 0.00 1.40
1711 3700 5.097529 CAGACAAATACTAGACCGCGTTAA 58.902 41.667 4.92 0.00 0.00 2.01
1712 3701 4.665212 CAGACAAATACTAGACCGCGTTA 58.335 43.478 4.92 0.00 0.00 3.18
1713 3702 3.508762 CAGACAAATACTAGACCGCGTT 58.491 45.455 4.92 0.00 0.00 4.84
1714 3703 2.734492 GCAGACAAATACTAGACCGCGT 60.734 50.000 4.92 0.00 0.00 6.01
1715 3704 1.852895 GCAGACAAATACTAGACCGCG 59.147 52.381 0.00 0.00 0.00 6.46
1716 3705 1.852895 CGCAGACAAATACTAGACCGC 59.147 52.381 0.00 0.00 0.00 5.68
1717 3706 3.416119 TCGCAGACAAATACTAGACCG 57.584 47.619 0.00 0.00 0.00 4.79
1718 3707 3.546670 CGTTCGCAGACAAATACTAGACC 59.453 47.826 0.00 0.00 34.32 3.85
1721 3710 2.921121 TGCGTTCGCAGACAAATACTAG 59.079 45.455 15.82 0.00 36.09 2.57
1723 3712 1.790755 TGCGTTCGCAGACAAATACT 58.209 45.000 15.82 0.00 36.09 2.12
1724 3713 2.348666 AGATGCGTTCGCAGACAAATAC 59.651 45.455 23.18 8.47 44.75 1.89
1725 3714 2.616960 AGATGCGTTCGCAGACAAATA 58.383 42.857 23.18 0.00 44.75 1.40
1726 3715 1.442769 AGATGCGTTCGCAGACAAAT 58.557 45.000 23.18 7.18 44.75 2.32
1727 3716 1.724623 GTAGATGCGTTCGCAGACAAA 59.275 47.619 23.18 10.58 44.75 2.83
1728 3717 1.346365 GTAGATGCGTTCGCAGACAA 58.654 50.000 23.18 7.86 44.75 3.18
1729 3718 0.457853 GGTAGATGCGTTCGCAGACA 60.458 55.000 23.18 9.16 44.75 3.41
1730 3719 0.179134 AGGTAGATGCGTTCGCAGAC 60.179 55.000 23.18 19.06 44.75 3.51
1733 3722 0.037697 AACAGGTAGATGCGTTCGCA 60.038 50.000 21.44 21.44 45.65 5.10
1736 3725 1.992170 ACGAACAGGTAGATGCGTTC 58.008 50.000 0.00 0.00 35.50 3.95
1737 3726 2.450609 AACGAACAGGTAGATGCGTT 57.549 45.000 0.00 0.00 37.17 4.84
1739 3728 2.093783 GGAAAACGAACAGGTAGATGCG 59.906 50.000 0.00 0.00 0.00 4.73
1740 3729 2.418976 GGGAAAACGAACAGGTAGATGC 59.581 50.000 0.00 0.00 0.00 3.91
1742 3731 3.071892 TGTGGGAAAACGAACAGGTAGAT 59.928 43.478 0.00 0.00 0.00 1.98
1743 3732 2.435069 TGTGGGAAAACGAACAGGTAGA 59.565 45.455 0.00 0.00 0.00 2.59
1744 3733 2.841215 TGTGGGAAAACGAACAGGTAG 58.159 47.619 0.00 0.00 0.00 3.18
1746 3735 2.131776 TTGTGGGAAAACGAACAGGT 57.868 45.000 0.00 0.00 0.00 4.00
1748 3737 4.202010 ACTGATTTGTGGGAAAACGAACAG 60.202 41.667 0.00 0.00 33.46 3.16
1749 3738 3.697045 ACTGATTTGTGGGAAAACGAACA 59.303 39.130 0.00 0.00 0.00 3.18
1750 3739 4.301637 ACTGATTTGTGGGAAAACGAAC 57.698 40.909 0.00 0.00 0.00 3.95
1751 3740 4.023536 GCTACTGATTTGTGGGAAAACGAA 60.024 41.667 0.00 0.00 0.00 3.85
1753 3742 3.252215 TGCTACTGATTTGTGGGAAAACG 59.748 43.478 0.00 0.00 0.00 3.60
1754 3743 4.846779 TGCTACTGATTTGTGGGAAAAC 57.153 40.909 0.00 0.00 0.00 2.43
1758 3747 3.153919 GGTTTGCTACTGATTTGTGGGA 58.846 45.455 0.00 0.00 0.00 4.37
1759 3748 2.890311 TGGTTTGCTACTGATTTGTGGG 59.110 45.455 0.00 0.00 0.00 4.61
1761 3750 4.037923 ACCTTGGTTTGCTACTGATTTGTG 59.962 41.667 0.00 0.00 0.00 3.33
1762 3751 4.037923 CACCTTGGTTTGCTACTGATTTGT 59.962 41.667 0.00 0.00 0.00 2.83
1766 3755 2.795329 CCACCTTGGTTTGCTACTGAT 58.205 47.619 0.00 0.00 31.35 2.90
1767 3756 1.817740 GCCACCTTGGTTTGCTACTGA 60.818 52.381 4.40 0.00 40.46 3.41
1772 3761 0.393820 CAATGCCACCTTGGTTTGCT 59.606 50.000 10.98 0.00 40.46 3.91
1773 3762 1.229975 GCAATGCCACCTTGGTTTGC 61.230 55.000 14.91 14.91 44.80 3.68
1774 3763 0.945265 CGCAATGCCACCTTGGTTTG 60.945 55.000 0.00 0.71 40.46 2.93
1775 3764 1.367102 CGCAATGCCACCTTGGTTT 59.633 52.632 0.00 0.00 40.46 3.27
1776 3765 2.573083 CCGCAATGCCACCTTGGTT 61.573 57.895 0.00 0.00 40.46 3.67
1778 3767 3.762247 CCCGCAATGCCACCTTGG 61.762 66.667 0.00 0.00 41.55 3.61
1779 3768 2.676121 TCCCGCAATGCCACCTTG 60.676 61.111 0.00 0.00 0.00 3.61
1780 3769 2.361610 CTCCCGCAATGCCACCTT 60.362 61.111 0.00 0.00 0.00 3.50
1781 3770 3.628646 GACTCCCGCAATGCCACCT 62.629 63.158 0.00 0.00 0.00 4.00
1782 3771 3.134127 GACTCCCGCAATGCCACC 61.134 66.667 0.00 0.00 0.00 4.61
1783 3772 3.134127 GGACTCCCGCAATGCCAC 61.134 66.667 0.00 0.00 0.00 5.01
1795 3784 3.069318 AGGCGGAGGTTCGGACTC 61.069 66.667 0.00 0.00 27.68 3.36
1796 3785 3.382832 CAGGCGGAGGTTCGGACT 61.383 66.667 0.00 0.00 35.21 3.85
1798 3787 3.691342 CACAGGCGGAGGTTCGGA 61.691 66.667 0.00 0.00 0.00 4.55
1800 3789 3.958147 ATGCACAGGCGGAGGTTCG 62.958 63.158 0.00 0.00 45.35 3.95
1802 3791 1.973281 CAATGCACAGGCGGAGGTT 60.973 57.895 0.00 0.00 45.35 3.50
1803 3792 2.360350 CAATGCACAGGCGGAGGT 60.360 61.111 0.00 0.00 45.35 3.85
1805 3794 1.642037 CTCACAATGCACAGGCGGAG 61.642 60.000 0.00 0.00 45.35 4.63
1808 3797 1.208358 CACTCACAATGCACAGGCG 59.792 57.895 0.00 0.00 45.35 5.52
1809 3798 1.174712 ACCACTCACAATGCACAGGC 61.175 55.000 0.00 0.00 41.68 4.85
1815 3804 2.024176 ATACGGACCACTCACAATGC 57.976 50.000 0.00 0.00 0.00 3.56
1816 3805 3.334691 ACAATACGGACCACTCACAATG 58.665 45.455 0.00 0.00 0.00 2.82
1822 3811 2.415512 GCAGAAACAATACGGACCACTC 59.584 50.000 0.00 0.00 0.00 3.51
1825 3814 1.434555 CGCAGAAACAATACGGACCA 58.565 50.000 0.00 0.00 0.00 4.02
1827 3816 0.096454 GGCGCAGAAACAATACGGAC 59.904 55.000 10.83 0.00 0.00 4.79
1828 3817 0.320858 TGGCGCAGAAACAATACGGA 60.321 50.000 10.83 0.00 0.00 4.69
1832 3821 2.288518 GGGTTTTGGCGCAGAAACAATA 60.289 45.455 27.71 10.16 37.46 1.90
1834 3823 0.179097 GGGTTTTGGCGCAGAAACAA 60.179 50.000 27.71 14.09 37.46 2.83
1838 3827 2.517402 ACGGGTTTTGGCGCAGAA 60.517 55.556 10.83 0.00 0.00 3.02
1839 3828 3.283684 CACGGGTTTTGGCGCAGA 61.284 61.111 10.83 0.00 0.00 4.26
1842 3831 4.279043 AAGCACGGGTTTTGGCGC 62.279 61.111 0.00 0.00 0.00 6.53
1843 3832 2.050442 GAAGCACGGGTTTTGGCG 60.050 61.111 0.00 0.00 0.00 5.69
1846 3835 1.830408 TGGGGAAGCACGGGTTTTG 60.830 57.895 0.00 0.00 0.00 2.44
1847 3836 1.830847 GTGGGGAAGCACGGGTTTT 60.831 57.895 0.00 0.00 0.00 2.43
1855 3844 1.460255 CAAAGAGGGTGGGGAAGCA 59.540 57.895 0.00 0.00 0.00 3.91
1858 3847 1.767692 GAGCAAAGAGGGTGGGGAA 59.232 57.895 0.00 0.00 0.00 3.97
1862 3851 1.272092 TGATTGGAGCAAAGAGGGTGG 60.272 52.381 0.00 0.00 0.00 4.61
1864 3853 3.463048 AATGATTGGAGCAAAGAGGGT 57.537 42.857 0.00 0.00 0.00 4.34
1866 3855 3.181493 CGGAAATGATTGGAGCAAAGAGG 60.181 47.826 0.00 0.00 0.00 3.69
1868 3857 2.164219 GCGGAAATGATTGGAGCAAAGA 59.836 45.455 0.00 0.00 0.00 2.52
1870 3859 1.135431 CGCGGAAATGATTGGAGCAAA 60.135 47.619 0.00 0.00 0.00 3.68
1874 3863 1.356624 GGCGCGGAAATGATTGGAG 59.643 57.895 8.83 0.00 0.00 3.86
1875 3864 0.962855 TTGGCGCGGAAATGATTGGA 60.963 50.000 8.83 0.00 0.00 3.53
1876 3865 0.526096 CTTGGCGCGGAAATGATTGG 60.526 55.000 8.83 0.00 0.00 3.16
1877 3866 0.171007 ACTTGGCGCGGAAATGATTG 59.829 50.000 8.83 0.00 0.00 2.67
1878 3867 0.887933 AACTTGGCGCGGAAATGATT 59.112 45.000 8.83 0.00 0.00 2.57
1879 3868 0.171007 CAACTTGGCGCGGAAATGAT 59.829 50.000 8.83 0.00 0.00 2.45
1880 3869 0.886938 TCAACTTGGCGCGGAAATGA 60.887 50.000 8.83 0.00 0.00 2.57
1881 3870 0.039617 TTCAACTTGGCGCGGAAATG 60.040 50.000 8.83 0.00 0.00 2.32
1883 3872 1.652012 CTTCAACTTGGCGCGGAAA 59.348 52.632 8.83 0.00 0.00 3.13
1884 3873 2.903547 GCTTCAACTTGGCGCGGAA 61.904 57.895 8.83 0.00 0.00 4.30
1886 3875 4.741781 CGCTTCAACTTGGCGCGG 62.742 66.667 8.83 0.00 42.28 6.46
1890 3879 0.519077 CCTTCTCGCTTCAACTTGGC 59.481 55.000 0.00 0.00 0.00 4.52
1891 3880 1.160137 CCCTTCTCGCTTCAACTTGG 58.840 55.000 0.00 0.00 0.00 3.61
1892 3881 1.160137 CCCCTTCTCGCTTCAACTTG 58.840 55.000 0.00 0.00 0.00 3.16
1893 3882 0.606673 GCCCCTTCTCGCTTCAACTT 60.607 55.000 0.00 0.00 0.00 2.66
1894 3883 1.003233 GCCCCTTCTCGCTTCAACT 60.003 57.895 0.00 0.00 0.00 3.16
1897 3886 4.760047 GCGCCCCTTCTCGCTTCA 62.760 66.667 0.00 0.00 46.92 3.02
1903 3892 3.254024 TTGACTGGCGCCCCTTCTC 62.254 63.158 26.77 11.28 0.00 2.87
1904 3893 3.249189 TTGACTGGCGCCCCTTCT 61.249 61.111 26.77 0.17 0.00 2.85
1905 3894 2.543067 ATCTTGACTGGCGCCCCTTC 62.543 60.000 26.77 17.70 0.00 3.46
1907 3896 3.011517 ATCTTGACTGGCGCCCCT 61.012 61.111 26.77 8.65 0.00 4.79
1908 3897 2.825836 CATCTTGACTGGCGCCCC 60.826 66.667 26.77 13.93 0.00 5.80
1910 3899 2.456119 CGTCATCTTGACTGGCGCC 61.456 63.158 22.73 22.73 44.85 6.53
1911 3900 2.456119 CCGTCATCTTGACTGGCGC 61.456 63.158 0.00 0.00 44.85 6.53
1912 3901 0.803768 CTCCGTCATCTTGACTGGCG 60.804 60.000 6.13 0.00 44.85 5.69
1913 3902 0.532573 TCTCCGTCATCTTGACTGGC 59.467 55.000 6.13 0.00 44.85 4.85
1915 3904 1.821753 ACCTCTCCGTCATCTTGACTG 59.178 52.381 6.13 0.00 44.85 3.51
1916 3905 2.223803 ACCTCTCCGTCATCTTGACT 57.776 50.000 6.13 0.00 44.85 3.41
1918 3907 2.525368 TCAACCTCTCCGTCATCTTGA 58.475 47.619 0.00 0.00 0.00 3.02
1919 3908 3.056536 TCTTCAACCTCTCCGTCATCTTG 60.057 47.826 0.00 0.00 0.00 3.02
1922 3911 3.254892 GTTCTTCAACCTCTCCGTCATC 58.745 50.000 0.00 0.00 0.00 2.92
1925 3914 2.814280 TGTTCTTCAACCTCTCCGTC 57.186 50.000 0.00 0.00 0.00 4.79
1927 3916 3.601443 AGATGTTCTTCAACCTCTCCG 57.399 47.619 0.00 0.00 33.52 4.63
1928 3917 4.006319 CCAAGATGTTCTTCAACCTCTCC 58.994 47.826 0.00 0.00 36.71 3.71
1930 3919 3.181440 TGCCAAGATGTTCTTCAACCTCT 60.181 43.478 0.00 0.00 38.68 3.69
1931 3920 3.149196 TGCCAAGATGTTCTTCAACCTC 58.851 45.455 0.00 0.00 33.78 3.85
1932 3921 3.228188 TGCCAAGATGTTCTTCAACCT 57.772 42.857 0.00 0.00 33.78 3.50
1933 3922 4.037923 TCTTTGCCAAGATGTTCTTCAACC 59.962 41.667 0.00 0.00 33.78 3.77
1934 3923 5.186996 TCTTTGCCAAGATGTTCTTCAAC 57.813 39.130 0.00 0.00 33.78 3.18
1935 3924 5.221303 CCTTCTTTGCCAAGATGTTCTTCAA 60.221 40.000 0.37 0.00 38.89 2.69
1936 3925 4.279169 CCTTCTTTGCCAAGATGTTCTTCA 59.721 41.667 0.37 0.00 38.89 3.02
1937 3926 4.520492 TCCTTCTTTGCCAAGATGTTCTTC 59.480 41.667 0.37 0.00 38.89 2.87
1939 3928 4.077822 CTCCTTCTTTGCCAAGATGTTCT 58.922 43.478 0.37 0.00 38.89 3.01
1940 3929 3.192212 CCTCCTTCTTTGCCAAGATGTTC 59.808 47.826 0.37 0.00 38.89 3.18
1941 3930 3.160269 CCTCCTTCTTTGCCAAGATGTT 58.840 45.455 0.37 0.00 38.89 2.71
1942 3931 2.800250 CCTCCTTCTTTGCCAAGATGT 58.200 47.619 0.37 0.00 38.89 3.06
1944 3933 1.076024 TGCCTCCTTCTTTGCCAAGAT 59.924 47.619 0.37 0.00 38.89 2.40
1948 3937 2.025037 ACATATGCCTCCTTCTTTGCCA 60.025 45.455 1.58 0.00 0.00 4.92
1949 3938 2.620585 GACATATGCCTCCTTCTTTGCC 59.379 50.000 1.58 0.00 0.00 4.52
1950 3939 3.282021 TGACATATGCCTCCTTCTTTGC 58.718 45.455 1.58 0.00 0.00 3.68
1954 3943 3.549794 GCTTTGACATATGCCTCCTTCT 58.450 45.455 1.58 0.00 0.00 2.85
1955 3944 2.289002 CGCTTTGACATATGCCTCCTTC 59.711 50.000 1.58 0.00 0.00 3.46
1957 3946 1.959042 CGCTTTGACATATGCCTCCT 58.041 50.000 1.58 0.00 0.00 3.69
1958 3947 0.308993 GCGCTTTGACATATGCCTCC 59.691 55.000 0.00 0.00 0.00 4.30
1959 3948 1.303309 AGCGCTTTGACATATGCCTC 58.697 50.000 2.64 0.00 0.00 4.70
1960 3949 2.620251 TAGCGCTTTGACATATGCCT 57.380 45.000 18.68 0.00 0.00 4.75
1961 3950 5.106555 ACATTATAGCGCTTTGACATATGCC 60.107 40.000 18.68 0.00 0.00 4.40
1965 3954 6.145534 GCTACACATTATAGCGCTTTGACATA 59.854 38.462 18.68 3.50 36.02 2.29
1966 3955 5.050091 GCTACACATTATAGCGCTTTGACAT 60.050 40.000 18.68 4.74 36.02 3.06
1968 3957 4.762809 GCTACACATTATAGCGCTTTGAC 58.237 43.478 18.68 0.00 36.02 3.18
1976 3965 7.464830 TTCTTTTCTCGCTACACATTATAGC 57.535 36.000 0.00 0.00 41.43 2.97
1977 3966 9.035607 ACATTCTTTTCTCGCTACACATTATAG 57.964 33.333 0.00 0.00 0.00 1.31
1978 3967 8.817100 CACATTCTTTTCTCGCTACACATTATA 58.183 33.333 0.00 0.00 0.00 0.98
1980 3969 6.871492 TCACATTCTTTTCTCGCTACACATTA 59.129 34.615 0.00 0.00 0.00 1.90
1983 3972 4.627058 TCACATTCTTTTCTCGCTACACA 58.373 39.130 0.00 0.00 0.00 3.72
1985 3974 5.538118 TCTTCACATTCTTTTCTCGCTACA 58.462 37.500 0.00 0.00 0.00 2.74
1987 3976 5.171476 CCTCTTCACATTCTTTTCTCGCTA 58.829 41.667 0.00 0.00 0.00 4.26
1988 3977 3.999663 CCTCTTCACATTCTTTTCTCGCT 59.000 43.478 0.00 0.00 0.00 4.93
1989 3978 3.748568 ACCTCTTCACATTCTTTTCTCGC 59.251 43.478 0.00 0.00 0.00 5.03
1990 3979 5.466728 TGAACCTCTTCACATTCTTTTCTCG 59.533 40.000 0.00 0.00 31.00 4.04
1992 3981 6.603201 TGTTGAACCTCTTCACATTCTTTTCT 59.397 34.615 0.00 0.00 36.06 2.52
1993 3982 6.795399 TGTTGAACCTCTTCACATTCTTTTC 58.205 36.000 0.00 0.00 36.06 2.29
1996 3985 6.302269 AGATGTTGAACCTCTTCACATTCTT 58.698 36.000 0.00 0.00 36.06 2.52
1998 3987 6.205464 TCAAGATGTTGAACCTCTTCACATTC 59.795 38.462 12.03 0.00 39.85 2.67
1999 3988 6.064060 TCAAGATGTTGAACCTCTTCACATT 58.936 36.000 12.03 0.00 39.85 2.71
2003 3992 5.005740 CCATCAAGATGTTGAACCTCTTCA 58.994 41.667 9.61 1.40 45.88 3.02
2004 3993 4.142513 GCCATCAAGATGTTGAACCTCTTC 60.143 45.833 9.61 0.00 45.88 2.87
2005 3994 3.760684 GCCATCAAGATGTTGAACCTCTT 59.239 43.478 9.61 9.59 45.88 2.85
2008 3997 2.086869 CGCCATCAAGATGTTGAACCT 58.913 47.619 9.61 0.00 45.88 3.50
2009 3998 1.133025 CCGCCATCAAGATGTTGAACC 59.867 52.381 9.61 0.54 45.88 3.62
2010 3999 1.468054 GCCGCCATCAAGATGTTGAAC 60.468 52.381 9.61 1.89 45.88 3.18
2012 4001 0.322366 TGCCGCCATCAAGATGTTGA 60.322 50.000 7.86 7.86 46.81 3.18
2013 4002 0.527113 TTGCCGCCATCAAGATGTTG 59.473 50.000 9.04 0.00 37.11 3.33
2014 4003 0.527565 GTTGCCGCCATCAAGATGTT 59.472 50.000 9.04 0.00 37.11 2.71
2016 4005 1.314534 TGGTTGCCGCCATCAAGATG 61.315 55.000 3.07 3.07 38.51 2.90
2017 4006 0.611618 TTGGTTGCCGCCATCAAGAT 60.612 50.000 0.00 0.00 38.48 2.40
2018 4007 1.228398 TTGGTTGCCGCCATCAAGA 60.228 52.632 0.00 0.00 38.48 3.02
2019 4008 1.213537 CTTGGTTGCCGCCATCAAG 59.786 57.895 3.25 3.25 38.48 3.02
2020 4009 0.825425 TTCTTGGTTGCCGCCATCAA 60.825 50.000 0.00 0.00 38.48 2.57
2022 4011 0.960364 TCTTCTTGGTTGCCGCCATC 60.960 55.000 0.00 0.00 38.48 3.51
2024 4013 1.152860 TTCTTCTTGGTTGCCGCCA 60.153 52.632 0.00 0.00 36.62 5.69
2025 4014 0.889186 TCTTCTTCTTGGTTGCCGCC 60.889 55.000 0.00 0.00 0.00 6.13
2027 4016 2.417933 CTGATCTTCTTCTTGGTTGCCG 59.582 50.000 0.00 0.00 0.00 5.69
2028 4017 2.163211 GCTGATCTTCTTCTTGGTTGCC 59.837 50.000 0.00 0.00 0.00 4.52
2030 4019 3.683802 AGGCTGATCTTCTTCTTGGTTG 58.316 45.455 0.00 0.00 0.00 3.77
2032 4021 3.328931 TCAAGGCTGATCTTCTTCTTGGT 59.671 43.478 0.00 0.00 34.23 3.67
2034 4023 5.954296 TTTCAAGGCTGATCTTCTTCTTG 57.046 39.130 0.00 0.00 34.61 3.02
2035 4024 6.966534 TTTTTCAAGGCTGATCTTCTTCTT 57.033 33.333 0.00 0.00 0.00 2.52
2057 4046 9.899226 CTTATTCTCTCCGAATTTGTTCTTTTT 57.101 29.630 0.00 0.00 42.26 1.94
2059 4048 7.665974 ACCTTATTCTCTCCGAATTTGTTCTTT 59.334 33.333 0.00 0.00 42.26 2.52
2060 4049 7.168905 ACCTTATTCTCTCCGAATTTGTTCTT 58.831 34.615 0.00 0.00 42.26 2.52
2061 4050 6.712276 ACCTTATTCTCTCCGAATTTGTTCT 58.288 36.000 0.00 0.00 42.26 3.01
2064 4053 6.472887 TCAACCTTATTCTCTCCGAATTTGT 58.527 36.000 0.00 0.00 42.26 2.83
2065 4054 6.457528 GCTCAACCTTATTCTCTCCGAATTTG 60.458 42.308 0.00 0.00 42.26 2.32
2080 4145 1.214589 GGTCGCGAGCTCAACCTTA 59.785 57.895 29.66 0.00 0.00 2.69
2130 4206 2.013563 GCCGCATTGAGATCCAAGTCA 61.014 52.381 0.00 0.00 38.31 3.41
2143 4219 1.521457 ACACGATCATCGCCGCATT 60.521 52.632 7.05 0.00 45.12 3.56
2267 4361 1.186200 ATGCCACTTCGCTCACTCTA 58.814 50.000 0.00 0.00 0.00 2.43
2289 4383 1.609208 TTTCTTCCCAGACTTGCTGC 58.391 50.000 0.00 0.00 43.50 5.25
2349 4446 0.678395 CGTCTAGATGCAGAGGCCAT 59.322 55.000 5.01 0.00 40.13 4.40
2424 4521 9.593134 GTCAAGATGATGACTTCATACTTACTT 57.407 33.333 3.94 1.34 45.29 2.24
2493 4590 5.975693 TTTGGTATTCGGCTCAGAATTTT 57.024 34.783 7.64 0.00 40.83 1.82
2497 4594 5.357257 GTCTATTTGGTATTCGGCTCAGAA 58.643 41.667 0.00 0.00 34.31 3.02
2500 4597 3.709653 AGGTCTATTTGGTATTCGGCTCA 59.290 43.478 0.00 0.00 0.00 4.26
2524 4621 4.037565 GCTTTAGTTGTTAGGCTTTGGTGT 59.962 41.667 0.00 0.00 0.00 4.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.