Multiple sequence alignment - TraesCS7A01G491500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G491500 chr7A 100.000 3476 0 0 1 3476 680399515 680396040 0.000000e+00 6420
1 TraesCS7A01G491500 chr7A 86.713 286 15 3 2893 3178 53918482 53918744 2.620000e-76 296
2 TraesCS7A01G491500 chr7A 92.308 156 12 0 1009 1164 680343200 680343045 4.520000e-54 222
3 TraesCS7A01G491500 chr7D 93.265 2242 92 23 685 2884 588696606 588698830 0.000000e+00 3249
4 TraesCS7A01G491500 chr7D 90.805 696 54 7 1 690 588695893 588696584 0.000000e+00 922
5 TraesCS7A01G491500 chr7D 93.916 263 15 1 3183 3444 588698838 588699100 2.510000e-106 396
6 TraesCS7A01G491500 chr7D 91.613 155 13 0 1010 1164 588555891 588555737 7.560000e-52 215
7 TraesCS7A01G491500 chr7B 90.158 884 46 16 2023 2898 662983510 662982660 0.000000e+00 1112
8 TraesCS7A01G491500 chr7B 94.788 614 25 4 1380 1986 662984126 662983513 0.000000e+00 950
9 TraesCS7A01G491500 chr7B 90.962 686 46 8 1 679 662985499 662984823 0.000000e+00 909
10 TraesCS7A01G491500 chr7B 89.957 697 25 21 759 1416 662984816 662984126 0.000000e+00 857
11 TraesCS7A01G491500 chr7B 89.399 283 11 1 2897 3179 717328905 717329168 4.300000e-89 339
12 TraesCS7A01G491500 chr7B 87.451 255 21 4 3186 3439 662982652 662982408 2.040000e-72 283
13 TraesCS7A01G491500 chr7B 91.558 154 13 0 1011 1164 662676249 662676096 2.720000e-51 213
14 TraesCS7A01G491500 chr3B 89.324 281 26 2 2897 3173 192032569 192032849 1.990000e-92 350
15 TraesCS7A01G491500 chr5A 96.226 212 8 0 2968 3179 563891680 563891891 7.140000e-92 348
16 TraesCS7A01G491500 chr5A 95.755 212 9 0 2968 3179 148835831 148835620 3.320000e-90 342
17 TraesCS7A01G491500 chr6D 95.755 212 9 0 2968 3179 226003012 226003223 3.320000e-90 342
18 TraesCS7A01G491500 chr6A 95.755 212 9 0 2968 3179 181909898 181910109 3.320000e-90 342
19 TraesCS7A01G491500 chr3A 95.755 212 9 0 2968 3179 717621053 717621264 3.320000e-90 342
20 TraesCS7A01G491500 chr3A 88.652 282 13 4 2894 3175 623825457 623825195 3.350000e-85 326
21 TraesCS7A01G491500 chr3A 86.316 285 19 5 2896 3179 379841392 379841657 3.390000e-75 292
22 TraesCS7A01G491500 chr3A 87.773 229 8 2 2887 3115 456910779 456910987 2.070000e-62 250
23 TraesCS7A01G491500 chr4A 95.283 212 10 0 2968 3179 615099273 615099484 1.550000e-88 337
24 TraesCS7A01G491500 chr1A 95.283 212 10 0 2968 3179 558016932 558017143 1.550000e-88 337
25 TraesCS7A01G491500 chr1A 95.349 86 2 2 2898 2981 525024587 525024672 6.050000e-28 135
26 TraesCS7A01G491500 chr5B 87.050 278 16 2 2891 3168 656725738 656725995 2.620000e-76 296
27 TraesCS7A01G491500 chr4B 82.877 292 31 5 2888 3179 575361694 575361422 9.640000e-61 244
28 TraesCS7A01G491500 chr2A 80.851 282 27 19 2898 3179 523457886 523457632 2.740000e-46 196


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G491500 chr7A 680396040 680399515 3475 True 6420.000000 6420 100.0000 1 3476 1 chr7A.!!$R2 3475
1 TraesCS7A01G491500 chr7D 588695893 588699100 3207 False 1522.333333 3249 92.6620 1 3444 3 chr7D.!!$F1 3443
2 TraesCS7A01G491500 chr7B 662982408 662985499 3091 True 822.200000 1112 90.6632 1 3439 5 chr7B.!!$R2 3438

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
895 932 1.08437 GCACCTAGCGAAACGAGCAT 61.084 55.0 0.0 0.0 37.01 3.79 F
2097 2222 0.89553 TGCCACCTACTGCTACTGTC 59.104 55.0 0.0 0.0 0.00 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2137 2262 0.381089 AGTAACTAGCTACAGCCGCG 59.619 55.0 0.00 0.0 43.38 6.46 R
3006 3149 0.033601 AGTCTCTCGGAGGTGCTCAT 60.034 55.0 4.96 0.0 31.08 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 62 4.616802 CCGTTGTTTAGCAGCATTAAGTTG 59.383 41.667 0.00 0.00 0.00 3.16
62 63 5.212194 CGTTGTTTAGCAGCATTAAGTTGT 58.788 37.500 0.00 0.00 0.00 3.32
84 85 2.233355 GATGTTTCATTCACACGTGCG 58.767 47.619 17.22 6.29 0.00 5.34
108 109 3.068560 ACCGTCGTTTAGCAGCATTAAA 58.931 40.909 0.00 0.00 0.00 1.52
116 117 5.971202 CGTTTAGCAGCATTAAATTACTGGG 59.029 40.000 0.00 0.00 0.00 4.45
122 123 6.268387 AGCAGCATTAAATTACTGGGCATATT 59.732 34.615 0.00 0.00 0.00 1.28
140 141 2.356553 GTCCACACGTGCGCCTAA 60.357 61.111 17.22 0.00 0.00 2.69
144 145 2.107343 ACACGTGCGCCTAACACA 59.893 55.556 17.22 0.00 37.93 3.72
230 233 7.177216 TGCAGTTGGAATCATTAAGAACTGATT 59.823 33.333 15.30 2.40 41.76 2.57
303 306 1.895020 GCATGTACTCCCCGTGGTGA 61.895 60.000 0.00 0.00 0.00 4.02
357 362 2.222027 GAGTGCTAGTGCTTGTTGGTT 58.778 47.619 0.00 0.00 40.48 3.67
368 374 6.639563 AGTGCTTGTTGGTTGAGTTTTTATT 58.360 32.000 0.00 0.00 0.00 1.40
380 387 7.970614 GGTTGAGTTTTTATTGAGCTGGAATAG 59.029 37.037 0.00 0.00 0.00 1.73
450 458 5.279106 GGCTGCATAAATGGCATCTTCATAA 60.279 40.000 0.00 0.00 41.06 1.90
456 464 9.918630 GCATAAATGGCATCTTCATAAACTAAT 57.081 29.630 0.00 0.00 0.00 1.73
503 511 1.940883 ATCACCGCTTGCAGGCATTG 61.941 55.000 21.61 15.94 0.00 2.82
518 526 5.882000 GCAGGCATTGGTCATATATCATGTA 59.118 40.000 0.00 0.00 0.00 2.29
524 532 5.420725 TGGTCATATATCATGTAGTGGCC 57.579 43.478 0.00 0.00 32.19 5.36
597 605 6.489127 TGTTTGGTAAGTTTATGGACATCG 57.511 37.500 0.00 0.00 0.00 3.84
618 626 8.869897 ACATCGACACAACAATAATTGTAGTAG 58.130 33.333 0.00 0.00 44.59 2.57
679 687 1.398071 GCCGTTACGAAAGCAGAACAC 60.398 52.381 6.24 0.00 0.00 3.32
680 688 1.193874 CCGTTACGAAAGCAGAACACC 59.806 52.381 6.24 0.00 0.00 4.16
728 763 9.472361 AGATTGAATTTCACACTCAATTTTCTG 57.528 29.630 0.00 0.00 39.34 3.02
825 860 5.523188 TCAGTTTGGTGATCACAAATTTTGC 59.477 36.000 26.47 12.11 39.68 3.68
826 861 5.293814 CAGTTTGGTGATCACAAATTTTGCA 59.706 36.000 26.47 10.27 39.68 4.08
879 916 6.322491 GGTACATCCAAAAATAAGTCAGCAC 58.678 40.000 0.00 0.00 35.97 4.40
884 921 4.700213 TCCAAAAATAAGTCAGCACCTAGC 59.300 41.667 0.00 0.00 46.19 3.42
895 932 1.084370 GCACCTAGCGAAACGAGCAT 61.084 55.000 0.00 0.00 37.01 3.79
932 969 2.575735 TGTTATGGCTTCCATGGTGAGA 59.424 45.455 12.58 0.00 44.84 3.27
964 1002 5.679734 TTCAGATTTGAGTGTTCAAGAGC 57.320 39.130 0.00 0.00 43.76 4.09
995 1051 6.767902 GCTGTCTTCCATTATTCTAATGGTCA 59.232 38.462 20.06 14.92 45.65 4.02
1282 1339 5.392057 GCCCTTTTCTATTCTTGTCTTTCCG 60.392 44.000 0.00 0.00 0.00 4.30
1347 1416 7.655732 GGCTTCTGGCTTTGTAAATTAAAGAAA 59.344 33.333 3.81 0.00 41.46 2.52
1348 1417 9.208022 GCTTCTGGCTTTGTAAATTAAAGAAAT 57.792 29.630 3.81 0.00 37.33 2.17
1430 1549 1.032114 GGGCATGTACAGCTGGAACC 61.032 60.000 19.93 9.28 0.00 3.62
1582 1701 5.193679 AGCTTTAGTTGAAAGTCTGTTGGT 58.806 37.500 0.00 0.00 45.56 3.67
1597 1719 1.338020 GTTGGTCTTGTTTCTGCAGGG 59.662 52.381 15.13 0.00 0.00 4.45
1627 1749 7.891561 TCACGACTAAAATTTTCCATCCAAAT 58.108 30.769 6.72 0.00 0.00 2.32
1836 1961 5.012148 GCATAGGATGTGGTGGACTTACTAT 59.988 44.000 0.00 0.00 36.65 2.12
1995 2120 3.646611 TCATTTTGTCAGCATGGTGTG 57.353 42.857 23.35 13.63 36.16 3.82
2012 2137 2.027073 TGATGCGGTGCTTCACGTC 61.027 57.895 3.56 0.00 37.70 4.34
2014 2139 1.291877 GATGCGGTGCTTCACGTCTT 61.292 55.000 0.00 0.00 34.83 3.01
2023 2148 5.560183 CGGTGCTTCACGTCTTTTCTTATTT 60.560 40.000 0.00 0.00 34.83 1.40
2024 2149 6.347079 CGGTGCTTCACGTCTTTTCTTATTTA 60.347 38.462 0.00 0.00 34.83 1.40
2025 2150 7.527457 GGTGCTTCACGTCTTTTCTTATTTAT 58.473 34.615 0.00 0.00 34.83 1.40
2026 2151 8.021396 GGTGCTTCACGTCTTTTCTTATTTATT 58.979 33.333 0.00 0.00 34.83 1.40
2048 2173 6.987403 TTGGTTAAAATTGAGCTAGGGTTT 57.013 33.333 0.00 0.00 0.00 3.27
2056 2181 7.775053 AAATTGAGCTAGGGTTTTGTATTCA 57.225 32.000 0.00 0.00 0.00 2.57
2084 2209 1.682087 GGGAACACCTAGATTGCCACC 60.682 57.143 6.92 0.00 36.39 4.61
2085 2210 1.282157 GGAACACCTAGATTGCCACCT 59.718 52.381 0.00 0.00 0.00 4.00
2086 2211 2.504175 GGAACACCTAGATTGCCACCTA 59.496 50.000 0.00 0.00 0.00 3.08
2087 2212 3.532542 GAACACCTAGATTGCCACCTAC 58.467 50.000 0.00 0.00 0.00 3.18
2088 2213 2.834113 ACACCTAGATTGCCACCTACT 58.166 47.619 0.00 0.00 0.00 2.57
2089 2214 2.501723 ACACCTAGATTGCCACCTACTG 59.498 50.000 0.00 0.00 0.00 2.74
2091 2216 1.765314 CCTAGATTGCCACCTACTGCT 59.235 52.381 0.00 0.00 0.00 4.24
2092 2217 2.965831 CCTAGATTGCCACCTACTGCTA 59.034 50.000 0.00 0.00 0.00 3.49
2093 2218 2.990066 AGATTGCCACCTACTGCTAC 57.010 50.000 0.00 0.00 0.00 3.58
2094 2219 2.472029 AGATTGCCACCTACTGCTACT 58.528 47.619 0.00 0.00 0.00 2.57
2095 2220 2.169352 AGATTGCCACCTACTGCTACTG 59.831 50.000 0.00 0.00 0.00 2.74
2096 2221 1.348064 TTGCCACCTACTGCTACTGT 58.652 50.000 0.00 0.00 0.00 3.55
2097 2222 0.895530 TGCCACCTACTGCTACTGTC 59.104 55.000 0.00 0.00 0.00 3.51
2122 2247 2.303311 GGCAAGTTAGACCAGACCTCTT 59.697 50.000 0.00 0.00 0.00 2.85
2137 2262 2.280628 CCTCTTACCGAAACATCTGGC 58.719 52.381 0.00 0.00 0.00 4.85
2252 2377 4.545678 AGTGGAGCTATCTCTGAGTCAAT 58.454 43.478 4.32 0.00 39.31 2.57
2254 2379 4.340666 GTGGAGCTATCTCTGAGTCAATGA 59.659 45.833 4.32 0.00 39.31 2.57
2292 2417 2.616256 CCAGCCTCATACTGTTCTTGCA 60.616 50.000 0.00 0.00 33.09 4.08
2301 2426 5.523552 TCATACTGTTCTTGCACCAATATCG 59.476 40.000 0.00 0.00 0.00 2.92
2337 2462 3.505480 AAAGCATTTGGCCCAAATTCA 57.495 38.095 19.03 0.00 40.60 2.57
2380 2505 1.375268 GCTGTCTCAGGTGGAGCAC 60.375 63.158 0.00 0.00 43.70 4.40
2562 2689 5.479306 CAGAGTCCCAGAAATAACGAGAAA 58.521 41.667 0.00 0.00 0.00 2.52
2694 2829 4.467769 TCCCGGTCCTCTATACTTTACTG 58.532 47.826 0.00 0.00 0.00 2.74
2710 2845 1.228063 CTGGTGCTGCTGTTCCTGT 60.228 57.895 0.00 0.00 0.00 4.00
2717 2852 1.224075 CTGCTGTTCCTGTGTCTGTG 58.776 55.000 0.00 0.00 0.00 3.66
2892 3035 7.945033 TCAAGTGATTTAAACCTGATTTTGC 57.055 32.000 0.00 0.00 0.00 3.68
2898 3041 6.991531 TGATTTAAACCTGATTTTGCTTGCTT 59.008 30.769 0.00 0.00 0.00 3.91
2900 3043 7.622893 TTTAAACCTGATTTTGCTTGCTTTT 57.377 28.000 0.00 0.00 0.00 2.27
2926 3069 4.335400 TGAGCATCAGTACAGACACAAA 57.665 40.909 0.00 0.00 42.56 2.83
2927 3070 4.058124 TGAGCATCAGTACAGACACAAAC 58.942 43.478 0.00 0.00 42.56 2.93
2928 3071 3.059884 AGCATCAGTACAGACACAAACG 58.940 45.455 0.00 0.00 0.00 3.60
2929 3072 2.411547 GCATCAGTACAGACACAAACGC 60.412 50.000 0.00 0.00 0.00 4.84
2930 3073 2.882927 TCAGTACAGACACAAACGCT 57.117 45.000 0.00 0.00 0.00 5.07
2931 3074 2.739292 TCAGTACAGACACAAACGCTC 58.261 47.619 0.00 0.00 0.00 5.03
2932 3075 2.100087 TCAGTACAGACACAAACGCTCA 59.900 45.455 0.00 0.00 0.00 4.26
2933 3076 3.059884 CAGTACAGACACAAACGCTCAT 58.940 45.455 0.00 0.00 0.00 2.90
2934 3077 4.022676 TCAGTACAGACACAAACGCTCATA 60.023 41.667 0.00 0.00 0.00 2.15
2935 3078 4.864806 CAGTACAGACACAAACGCTCATAT 59.135 41.667 0.00 0.00 0.00 1.78
2936 3079 6.033966 CAGTACAGACACAAACGCTCATATA 58.966 40.000 0.00 0.00 0.00 0.86
2937 3080 6.020599 CAGTACAGACACAAACGCTCATATAC 60.021 42.308 0.00 0.00 0.00 1.47
2938 3081 4.816392 ACAGACACAAACGCTCATATACA 58.184 39.130 0.00 0.00 0.00 2.29
2939 3082 4.625742 ACAGACACAAACGCTCATATACAC 59.374 41.667 0.00 0.00 0.00 2.90
2940 3083 3.857665 AGACACAAACGCTCATATACACG 59.142 43.478 0.00 0.00 0.00 4.49
2941 3084 2.347452 ACACAAACGCTCATATACACGC 59.653 45.455 0.00 0.00 0.00 5.34
2944 3087 3.916439 CGCTCATATACACGCGCA 58.084 55.556 5.73 0.00 39.11 6.09
2945 3088 2.434688 CGCTCATATACACGCGCAT 58.565 52.632 5.73 0.00 39.11 4.73
2946 3089 1.613270 CGCTCATATACACGCGCATA 58.387 50.000 5.73 1.53 39.11 3.14
2947 3090 1.317611 CGCTCATATACACGCGCATAC 59.682 52.381 5.73 0.00 39.11 2.39
2948 3091 2.324860 GCTCATATACACGCGCATACA 58.675 47.619 5.73 0.00 0.00 2.29
2949 3092 2.090658 GCTCATATACACGCGCATACAC 59.909 50.000 5.73 0.00 0.00 2.90
2950 3093 3.565516 CTCATATACACGCGCATACACT 58.434 45.455 5.73 0.00 0.00 3.55
2951 3094 3.561503 TCATATACACGCGCATACACTC 58.438 45.455 5.73 0.00 0.00 3.51
2952 3095 3.003897 TCATATACACGCGCATACACTCA 59.996 43.478 5.73 0.00 0.00 3.41
2953 3096 1.556564 ATACACGCGCATACACTCAC 58.443 50.000 5.73 0.00 0.00 3.51
2954 3097 0.457166 TACACGCGCATACACTCACC 60.457 55.000 5.73 0.00 0.00 4.02
2955 3098 2.125673 ACGCGCATACACTCACCC 60.126 61.111 5.73 0.00 0.00 4.61
2956 3099 2.890474 CGCGCATACACTCACCCC 60.890 66.667 8.75 0.00 0.00 4.95
2957 3100 2.584608 GCGCATACACTCACCCCT 59.415 61.111 0.30 0.00 0.00 4.79
2958 3101 1.820581 GCGCATACACTCACCCCTA 59.179 57.895 0.30 0.00 0.00 3.53
2959 3102 0.393077 GCGCATACACTCACCCCTAT 59.607 55.000 0.30 0.00 0.00 2.57
2960 3103 1.873903 GCGCATACACTCACCCCTATG 60.874 57.143 0.30 0.00 0.00 2.23
2961 3104 1.686587 CGCATACACTCACCCCTATGA 59.313 52.381 0.00 0.00 0.00 2.15
2962 3105 2.102420 CGCATACACTCACCCCTATGAA 59.898 50.000 0.00 0.00 0.00 2.57
2963 3106 3.467803 GCATACACTCACCCCTATGAAC 58.532 50.000 0.00 0.00 0.00 3.18
2964 3107 3.717707 CATACACTCACCCCTATGAACG 58.282 50.000 0.00 0.00 0.00 3.95
2965 3108 0.249398 ACACTCACCCCTATGAACGC 59.751 55.000 0.00 0.00 0.00 4.84
2966 3109 0.249120 CACTCACCCCTATGAACGCA 59.751 55.000 0.00 0.00 0.00 5.24
2967 3110 0.981183 ACTCACCCCTATGAACGCAA 59.019 50.000 0.00 0.00 0.00 4.85
2968 3111 1.338769 ACTCACCCCTATGAACGCAAC 60.339 52.381 0.00 0.00 0.00 4.17
2969 3112 0.981183 TCACCCCTATGAACGCAACT 59.019 50.000 0.00 0.00 0.00 3.16
2970 3113 1.066430 TCACCCCTATGAACGCAACTC 60.066 52.381 0.00 0.00 0.00 3.01
2971 3114 0.981183 ACCCCTATGAACGCAACTCA 59.019 50.000 0.00 0.00 0.00 3.41
2972 3115 1.338769 ACCCCTATGAACGCAACTCAC 60.339 52.381 0.00 0.00 0.00 3.51
2973 3116 1.369625 CCCTATGAACGCAACTCACC 58.630 55.000 0.00 0.00 0.00 4.02
2974 3117 1.369625 CCTATGAACGCAACTCACCC 58.630 55.000 0.00 0.00 0.00 4.61
2975 3118 1.369625 CTATGAACGCAACTCACCCC 58.630 55.000 0.00 0.00 0.00 4.95
2976 3119 0.981183 TATGAACGCAACTCACCCCT 59.019 50.000 0.00 0.00 0.00 4.79
2977 3120 0.981183 ATGAACGCAACTCACCCCTA 59.019 50.000 0.00 0.00 0.00 3.53
2978 3121 0.981183 TGAACGCAACTCACCCCTAT 59.019 50.000 0.00 0.00 0.00 2.57
2979 3122 1.338674 TGAACGCAACTCACCCCTATG 60.339 52.381 0.00 0.00 0.00 2.23
2980 3123 0.981183 AACGCAACTCACCCCTATGA 59.019 50.000 0.00 0.00 0.00 2.15
2981 3124 0.981183 ACGCAACTCACCCCTATGAA 59.019 50.000 0.00 0.00 0.00 2.57
2982 3125 1.338769 ACGCAACTCACCCCTATGAAC 60.339 52.381 0.00 0.00 0.00 3.18
2983 3126 1.369625 GCAACTCACCCCTATGAACG 58.630 55.000 0.00 0.00 0.00 3.95
2984 3127 1.369625 CAACTCACCCCTATGAACGC 58.630 55.000 0.00 0.00 0.00 4.84
2985 3128 0.981183 AACTCACCCCTATGAACGCA 59.019 50.000 0.00 0.00 0.00 5.24
2986 3129 0.249398 ACTCACCCCTATGAACGCAC 59.751 55.000 0.00 0.00 0.00 5.34
2987 3130 0.249120 CTCACCCCTATGAACGCACA 59.751 55.000 0.00 0.00 0.00 4.57
2988 3131 0.036765 TCACCCCTATGAACGCACAC 60.037 55.000 0.00 0.00 0.00 3.82
2989 3132 0.321210 CACCCCTATGAACGCACACA 60.321 55.000 0.00 0.00 0.00 3.72
2990 3133 0.321298 ACCCCTATGAACGCACACAC 60.321 55.000 0.00 0.00 0.00 3.82
2991 3134 1.358725 CCCCTATGAACGCACACACG 61.359 60.000 0.00 0.00 39.50 4.49
2992 3135 1.419922 CCTATGAACGCACACACGC 59.580 57.895 0.00 0.00 36.19 5.34
2993 3136 1.288419 CCTATGAACGCACACACGCA 61.288 55.000 0.00 0.00 36.19 5.24
2994 3137 0.179250 CTATGAACGCACACACGCAC 60.179 55.000 0.00 0.00 36.19 5.34
2995 3138 0.876342 TATGAACGCACACACGCACA 60.876 50.000 0.00 0.00 36.19 4.57
2996 3139 2.350760 GAACGCACACACGCACAC 60.351 61.111 0.00 0.00 36.19 3.82
2997 3140 3.783588 GAACGCACACACGCACACC 62.784 63.158 0.00 0.00 36.19 4.16
3000 3143 2.280524 GCACACACGCACACCCTA 60.281 61.111 0.00 0.00 0.00 3.53
3001 3144 2.604174 GCACACACGCACACCCTAC 61.604 63.158 0.00 0.00 0.00 3.18
3002 3145 1.959226 CACACACGCACACCCTACC 60.959 63.158 0.00 0.00 0.00 3.18
3003 3146 2.358247 CACACGCACACCCTACCC 60.358 66.667 0.00 0.00 0.00 3.69
3004 3147 3.633116 ACACGCACACCCTACCCC 61.633 66.667 0.00 0.00 0.00 4.95
3005 3148 3.319198 CACGCACACCCTACCCCT 61.319 66.667 0.00 0.00 0.00 4.79
3006 3149 1.985662 CACGCACACCCTACCCCTA 60.986 63.158 0.00 0.00 0.00 3.53
3007 3150 1.002533 ACGCACACCCTACCCCTAT 59.997 57.895 0.00 0.00 0.00 2.57
3008 3151 1.335132 ACGCACACCCTACCCCTATG 61.335 60.000 0.00 0.00 0.00 2.23
3009 3152 1.046472 CGCACACCCTACCCCTATGA 61.046 60.000 0.00 0.00 0.00 2.15
3010 3153 0.759346 GCACACCCTACCCCTATGAG 59.241 60.000 0.00 0.00 0.00 2.90
3011 3154 0.759346 CACACCCTACCCCTATGAGC 59.241 60.000 0.00 0.00 0.00 4.26
3012 3155 0.341961 ACACCCTACCCCTATGAGCA 59.658 55.000 0.00 0.00 0.00 4.26
3013 3156 0.759346 CACCCTACCCCTATGAGCAC 59.241 60.000 0.00 0.00 0.00 4.40
3014 3157 0.400093 ACCCTACCCCTATGAGCACC 60.400 60.000 0.00 0.00 0.00 5.01
3015 3158 0.104934 CCCTACCCCTATGAGCACCT 60.105 60.000 0.00 0.00 0.00 4.00
3016 3159 1.343069 CCTACCCCTATGAGCACCTC 58.657 60.000 0.00 0.00 0.00 3.85
3017 3160 1.343069 CTACCCCTATGAGCACCTCC 58.657 60.000 0.00 0.00 0.00 4.30
3018 3161 0.469331 TACCCCTATGAGCACCTCCG 60.469 60.000 0.00 0.00 0.00 4.63
3019 3162 1.457643 CCCCTATGAGCACCTCCGA 60.458 63.158 0.00 0.00 0.00 4.55
3020 3163 1.467678 CCCCTATGAGCACCTCCGAG 61.468 65.000 0.00 0.00 0.00 4.63
3021 3164 0.468214 CCCTATGAGCACCTCCGAGA 60.468 60.000 0.00 0.00 0.00 4.04
3022 3165 0.958091 CCTATGAGCACCTCCGAGAG 59.042 60.000 0.00 0.00 0.00 3.20
3023 3166 1.477740 CCTATGAGCACCTCCGAGAGA 60.478 57.143 0.00 0.00 0.00 3.10
3024 3167 1.606668 CTATGAGCACCTCCGAGAGAC 59.393 57.143 0.00 0.00 0.00 3.36
3025 3168 0.033601 ATGAGCACCTCCGAGAGACT 60.034 55.000 0.00 0.00 0.00 3.24
3026 3169 0.962855 TGAGCACCTCCGAGAGACTG 60.963 60.000 0.00 0.22 0.00 3.51
3027 3170 0.678366 GAGCACCTCCGAGAGACTGA 60.678 60.000 0.00 0.00 0.00 3.41
3028 3171 0.679640 AGCACCTCCGAGAGACTGAG 60.680 60.000 0.00 0.00 0.00 3.35
3029 3172 1.806568 CACCTCCGAGAGACTGAGC 59.193 63.158 0.00 0.00 0.00 4.26
3030 3173 1.379309 ACCTCCGAGAGACTGAGCC 60.379 63.158 0.00 0.00 0.00 4.70
3031 3174 2.477176 CCTCCGAGAGACTGAGCCG 61.477 68.421 0.00 0.00 0.00 5.52
3032 3175 2.438614 TCCGAGAGACTGAGCCGG 60.439 66.667 0.00 0.00 41.36 6.13
3033 3176 4.200283 CCGAGAGACTGAGCCGGC 62.200 72.222 21.89 21.89 33.47 6.13
3034 3177 3.443925 CGAGAGACTGAGCCGGCA 61.444 66.667 31.54 7.98 0.00 5.69
3035 3178 2.780094 CGAGAGACTGAGCCGGCAT 61.780 63.158 31.54 14.28 0.00 4.40
3036 3179 1.448119 CGAGAGACTGAGCCGGCATA 61.448 60.000 31.54 16.21 0.00 3.14
3037 3180 0.965439 GAGAGACTGAGCCGGCATAT 59.035 55.000 31.54 8.11 0.00 1.78
3038 3181 0.965439 AGAGACTGAGCCGGCATATC 59.035 55.000 31.54 18.63 0.00 1.63
3039 3182 0.676184 GAGACTGAGCCGGCATATCA 59.324 55.000 31.54 22.44 0.00 2.15
3040 3183 1.274728 GAGACTGAGCCGGCATATCAT 59.725 52.381 31.54 13.17 0.00 2.45
3041 3184 1.274728 AGACTGAGCCGGCATATCATC 59.725 52.381 31.54 19.98 0.00 2.92
3042 3185 1.274728 GACTGAGCCGGCATATCATCT 59.725 52.381 31.54 11.40 0.00 2.90
3043 3186 1.696336 ACTGAGCCGGCATATCATCTT 59.304 47.619 31.54 3.33 0.00 2.40
3044 3187 2.289320 ACTGAGCCGGCATATCATCTTC 60.289 50.000 31.54 14.56 0.00 2.87
3045 3188 1.693606 TGAGCCGGCATATCATCTTCA 59.306 47.619 31.54 17.27 0.00 3.02
3046 3189 2.289257 TGAGCCGGCATATCATCTTCAG 60.289 50.000 31.54 0.00 0.00 3.02
3047 3190 1.973515 AGCCGGCATATCATCTTCAGA 59.026 47.619 31.54 0.00 0.00 3.27
3048 3191 2.570752 AGCCGGCATATCATCTTCAGAT 59.429 45.455 31.54 0.00 34.56 2.90
3049 3192 3.008813 AGCCGGCATATCATCTTCAGATT 59.991 43.478 31.54 0.00 31.21 2.40
3050 3193 3.755378 GCCGGCATATCATCTTCAGATTT 59.245 43.478 24.80 0.00 31.21 2.17
3051 3194 4.937620 GCCGGCATATCATCTTCAGATTTA 59.062 41.667 24.80 0.00 31.21 1.40
3052 3195 5.163814 GCCGGCATATCATCTTCAGATTTAC 60.164 44.000 24.80 0.00 31.21 2.01
3053 3196 5.062683 CCGGCATATCATCTTCAGATTTACG 59.937 44.000 0.00 0.00 31.21 3.18
3054 3197 5.863935 CGGCATATCATCTTCAGATTTACGA 59.136 40.000 0.00 0.00 31.21 3.43
3055 3198 6.366061 CGGCATATCATCTTCAGATTTACGAA 59.634 38.462 0.00 0.00 31.21 3.85
3056 3199 7.411264 CGGCATATCATCTTCAGATTTACGAAG 60.411 40.741 0.00 0.00 40.02 3.79
3057 3200 7.386299 GGCATATCATCTTCAGATTTACGAAGT 59.614 37.037 0.00 0.00 39.70 3.01
3058 3201 8.431593 GCATATCATCTTCAGATTTACGAAGTC 58.568 37.037 0.00 0.00 39.70 3.01
3059 3202 8.634265 CATATCATCTTCAGATTTACGAAGTCG 58.366 37.037 0.00 0.00 39.70 4.18
3060 3203 4.798907 TCATCTTCAGATTTACGAAGTCGC 59.201 41.667 0.00 0.00 39.70 5.19
3061 3204 3.508762 TCTTCAGATTTACGAAGTCGCC 58.491 45.455 0.00 0.00 43.93 5.54
3062 3205 2.288961 TCAGATTTACGAAGTCGCCC 57.711 50.000 0.00 0.00 43.93 6.13
3063 3206 1.822990 TCAGATTTACGAAGTCGCCCT 59.177 47.619 0.00 0.00 43.93 5.19
3064 3207 3.018856 TCAGATTTACGAAGTCGCCCTA 58.981 45.455 0.00 0.00 43.93 3.53
3065 3208 3.066342 TCAGATTTACGAAGTCGCCCTAG 59.934 47.826 0.00 0.00 43.93 3.02
3066 3209 2.361438 AGATTTACGAAGTCGCCCTAGG 59.639 50.000 0.06 0.06 43.93 3.02
3067 3210 0.174162 TTTACGAAGTCGCCCTAGGC 59.826 55.000 2.05 0.00 43.93 3.93
3078 3221 4.253257 CCTAGGCGCCTCGTCGTC 62.253 72.222 36.73 0.00 36.23 4.20
3079 3222 4.592936 CTAGGCGCCTCGTCGTCG 62.593 72.222 36.73 9.83 39.34 5.12
3084 3227 4.907034 CGCCTCGTCGTCGATGGG 62.907 72.222 14.28 11.00 45.21 4.00
3085 3228 3.515286 GCCTCGTCGTCGATGGGA 61.515 66.667 16.08 4.83 45.21 4.37
3086 3229 3.060020 GCCTCGTCGTCGATGGGAA 62.060 63.158 16.08 0.00 45.21 3.97
3087 3230 1.226603 CCTCGTCGTCGATGGGAAC 60.227 63.158 16.08 0.00 45.21 3.62
3088 3231 1.582937 CTCGTCGTCGATGGGAACG 60.583 63.158 8.75 10.22 45.21 3.95
3089 3232 2.177531 CGTCGTCGATGGGAACGT 59.822 61.111 6.56 0.00 39.71 3.99
3090 3233 1.866496 CGTCGTCGATGGGAACGTC 60.866 63.158 6.56 0.00 43.20 4.34
3091 3234 1.505353 GTCGTCGATGGGAACGTCT 59.495 57.895 4.48 0.00 44.51 4.18
3092 3235 0.522915 GTCGTCGATGGGAACGTCTC 60.523 60.000 4.48 0.00 44.51 3.36
3093 3236 1.226603 CGTCGATGGGAACGTCTCC 60.227 63.158 0.00 7.90 44.51 3.71
3094 3237 1.654954 CGTCGATGGGAACGTCTCCT 61.655 60.000 13.94 0.00 44.68 3.69
3095 3238 0.100861 GTCGATGGGAACGTCTCCTC 59.899 60.000 13.94 6.42 44.68 3.71
3096 3239 1.035932 TCGATGGGAACGTCTCCTCC 61.036 60.000 13.94 6.16 44.68 4.30
3100 3243 4.115270 GGAACGTCTCCTCCCACT 57.885 61.111 8.87 0.00 41.61 4.00
3101 3244 3.277962 GGAACGTCTCCTCCCACTA 57.722 57.895 8.87 0.00 41.61 2.74
3102 3245 1.553706 GGAACGTCTCCTCCCACTAA 58.446 55.000 8.87 0.00 41.61 2.24
3103 3246 1.897802 GGAACGTCTCCTCCCACTAAA 59.102 52.381 8.87 0.00 41.61 1.85
3104 3247 2.301009 GGAACGTCTCCTCCCACTAAAA 59.699 50.000 8.87 0.00 41.61 1.52
3105 3248 3.586892 GAACGTCTCCTCCCACTAAAAG 58.413 50.000 0.00 0.00 0.00 2.27
3106 3249 1.275573 ACGTCTCCTCCCACTAAAAGC 59.724 52.381 0.00 0.00 0.00 3.51
3107 3250 1.275291 CGTCTCCTCCCACTAAAAGCA 59.725 52.381 0.00 0.00 0.00 3.91
3108 3251 2.701107 GTCTCCTCCCACTAAAAGCAC 58.299 52.381 0.00 0.00 0.00 4.40
3109 3252 2.038557 GTCTCCTCCCACTAAAAGCACA 59.961 50.000 0.00 0.00 0.00 4.57
3110 3253 2.912956 TCTCCTCCCACTAAAAGCACAT 59.087 45.455 0.00 0.00 0.00 3.21
3111 3254 3.055094 TCTCCTCCCACTAAAAGCACATC 60.055 47.826 0.00 0.00 0.00 3.06
3112 3255 2.009774 CCTCCCACTAAAAGCACATCG 58.990 52.381 0.00 0.00 0.00 3.84
3113 3256 1.398390 CTCCCACTAAAAGCACATCGC 59.602 52.381 0.00 0.00 42.91 4.58
3114 3257 0.451783 CCCACTAAAAGCACATCGCC 59.548 55.000 0.00 0.00 44.04 5.54
3115 3258 1.164411 CCACTAAAAGCACATCGCCA 58.836 50.000 0.00 0.00 44.04 5.69
3116 3259 1.131126 CCACTAAAAGCACATCGCCAG 59.869 52.381 0.00 0.00 44.04 4.85
3117 3260 2.076100 CACTAAAAGCACATCGCCAGA 58.924 47.619 0.00 0.00 44.04 3.86
3118 3261 2.483877 CACTAAAAGCACATCGCCAGAA 59.516 45.455 0.00 0.00 44.04 3.02
3119 3262 3.058293 CACTAAAAGCACATCGCCAGAAA 60.058 43.478 0.00 0.00 44.04 2.52
3120 3263 3.758554 ACTAAAAGCACATCGCCAGAAAT 59.241 39.130 0.00 0.00 44.04 2.17
3121 3264 2.927553 AAAGCACATCGCCAGAAATC 57.072 45.000 0.00 0.00 44.04 2.17
3122 3265 1.098050 AAGCACATCGCCAGAAATCC 58.902 50.000 0.00 0.00 44.04 3.01
3123 3266 0.254178 AGCACATCGCCAGAAATCCT 59.746 50.000 0.00 0.00 44.04 3.24
3124 3267 0.379669 GCACATCGCCAGAAATCCTG 59.620 55.000 0.00 0.00 42.55 3.86
3125 3268 2.013563 GCACATCGCCAGAAATCCTGA 61.014 52.381 0.00 0.00 45.78 3.86
3126 3269 2.358957 CACATCGCCAGAAATCCTGAA 58.641 47.619 0.00 0.00 45.78 3.02
3127 3270 2.749076 CACATCGCCAGAAATCCTGAAA 59.251 45.455 0.00 0.00 45.78 2.69
3128 3271 3.379372 CACATCGCCAGAAATCCTGAAAT 59.621 43.478 0.00 0.00 45.78 2.17
3129 3272 4.576053 CACATCGCCAGAAATCCTGAAATA 59.424 41.667 0.00 0.00 45.78 1.40
3130 3273 5.066375 CACATCGCCAGAAATCCTGAAATAA 59.934 40.000 0.00 0.00 45.78 1.40
3131 3274 5.652014 ACATCGCCAGAAATCCTGAAATAAA 59.348 36.000 0.00 0.00 45.78 1.40
3132 3275 6.322201 ACATCGCCAGAAATCCTGAAATAAAT 59.678 34.615 0.00 0.00 45.78 1.40
3133 3276 6.773976 TCGCCAGAAATCCTGAAATAAATT 57.226 33.333 0.00 0.00 45.78 1.82
3134 3277 6.795399 TCGCCAGAAATCCTGAAATAAATTC 58.205 36.000 0.00 0.00 45.78 2.17
3135 3278 6.376864 TCGCCAGAAATCCTGAAATAAATTCA 59.623 34.615 0.00 0.00 45.78 2.57
3149 3292 7.862372 TGAAATAAATTCAGGAATAATGCGAGC 59.138 33.333 0.00 0.00 43.08 5.03
3150 3293 6.882610 ATAAATTCAGGAATAATGCGAGCA 57.117 33.333 0.00 0.00 0.00 4.26
3151 3294 5.779529 AAATTCAGGAATAATGCGAGCAT 57.220 34.783 4.52 4.52 38.46 3.79
3152 3295 5.368256 AATTCAGGAATAATGCGAGCATC 57.632 39.130 11.26 0.00 35.31 3.91
3153 3296 3.473923 TCAGGAATAATGCGAGCATCA 57.526 42.857 11.26 0.00 35.31 3.07
3154 3297 3.396560 TCAGGAATAATGCGAGCATCAG 58.603 45.455 11.26 0.00 35.31 2.90
3155 3298 2.483106 CAGGAATAATGCGAGCATCAGG 59.517 50.000 11.26 0.00 35.31 3.86
3156 3299 2.369860 AGGAATAATGCGAGCATCAGGA 59.630 45.455 11.26 0.00 35.31 3.86
3157 3300 3.008813 AGGAATAATGCGAGCATCAGGAT 59.991 43.478 11.26 0.00 35.31 3.24
3158 3301 3.755378 GGAATAATGCGAGCATCAGGATT 59.245 43.478 11.26 8.63 35.31 3.01
3159 3302 4.217118 GGAATAATGCGAGCATCAGGATTT 59.783 41.667 11.26 0.00 35.31 2.17
3160 3303 4.761235 ATAATGCGAGCATCAGGATTTG 57.239 40.909 11.26 0.00 35.31 2.32
3161 3304 2.336945 ATGCGAGCATCAGGATTTGA 57.663 45.000 4.52 0.00 40.85 2.69
3162 3305 2.112380 TGCGAGCATCAGGATTTGAA 57.888 45.000 0.00 0.00 39.77 2.69
3163 3306 1.739466 TGCGAGCATCAGGATTTGAAC 59.261 47.619 0.00 0.00 39.77 3.18
3164 3307 1.064654 GCGAGCATCAGGATTTGAACC 59.935 52.381 0.00 0.00 39.77 3.62
3165 3308 1.672881 CGAGCATCAGGATTTGAACCC 59.327 52.381 0.00 0.00 39.77 4.11
3166 3309 2.681976 CGAGCATCAGGATTTGAACCCT 60.682 50.000 0.00 0.00 39.77 4.34
3171 3314 1.549203 CAGGATTTGAACCCTGGTGG 58.451 55.000 0.00 0.00 44.68 4.61
3181 3324 3.087065 CCTGGTGGGTTGGGGTAG 58.913 66.667 0.00 0.00 0.00 3.18
3184 3327 2.533492 GGTGGGTTGGGGTAGGGT 60.533 66.667 0.00 0.00 0.00 4.34
3196 3339 2.025321 GGGGTAGGGTGTGATGTTGAAT 60.025 50.000 0.00 0.00 0.00 2.57
3203 3346 5.988287 AGGGTGTGATGTTGAATTTGTTTT 58.012 33.333 0.00 0.00 0.00 2.43
3319 3462 6.405176 GCTGCTAAGCTAAAAGTGGAATCATT 60.405 38.462 0.00 0.00 46.60 2.57
3403 3546 2.578786 CTGGGTATGCATTGCTCATGA 58.421 47.619 3.54 0.00 34.31 3.07
3414 3557 1.767759 TGCTCATGATCTCGTGGAGA 58.232 50.000 0.00 0.00 43.20 3.71
3450 3594 2.433868 GTCCTGCACTGACGAGTAAA 57.566 50.000 0.00 0.00 0.00 2.01
3451 3595 2.960819 GTCCTGCACTGACGAGTAAAT 58.039 47.619 0.00 0.00 0.00 1.40
3452 3596 3.326747 GTCCTGCACTGACGAGTAAATT 58.673 45.455 0.00 0.00 0.00 1.82
3453 3597 3.123621 GTCCTGCACTGACGAGTAAATTG 59.876 47.826 0.00 0.00 0.00 2.32
3454 3598 2.159653 CCTGCACTGACGAGTAAATTGC 60.160 50.000 0.00 0.00 0.00 3.56
3455 3599 2.480037 CTGCACTGACGAGTAAATTGCA 59.520 45.455 0.00 0.00 0.00 4.08
3456 3600 2.223144 TGCACTGACGAGTAAATTGCAC 59.777 45.455 0.00 0.00 0.00 4.57
3457 3601 2.721797 GCACTGACGAGTAAATTGCACG 60.722 50.000 0.00 0.00 0.00 5.34
3458 3602 2.729360 CACTGACGAGTAAATTGCACGA 59.271 45.455 7.88 0.00 0.00 4.35
3459 3603 3.183574 CACTGACGAGTAAATTGCACGAA 59.816 43.478 7.88 0.00 0.00 3.85
3460 3604 3.805422 ACTGACGAGTAAATTGCACGAAA 59.195 39.130 7.88 0.00 0.00 3.46
3461 3605 4.123276 TGACGAGTAAATTGCACGAAAC 57.877 40.909 7.88 0.67 0.00 2.78
3462 3606 3.059461 TGACGAGTAAATTGCACGAAACC 60.059 43.478 7.88 0.00 0.00 3.27
3463 3607 2.873472 ACGAGTAAATTGCACGAAACCA 59.127 40.909 7.88 0.00 0.00 3.67
3464 3608 3.223157 CGAGTAAATTGCACGAAACCAC 58.777 45.455 0.00 0.00 0.00 4.16
3465 3609 3.561503 GAGTAAATTGCACGAAACCACC 58.438 45.455 0.00 0.00 0.00 4.61
3466 3610 2.952978 AGTAAATTGCACGAAACCACCA 59.047 40.909 0.00 0.00 0.00 4.17
3467 3611 2.507339 AAATTGCACGAAACCACCAG 57.493 45.000 0.00 0.00 0.00 4.00
3468 3612 1.398692 AATTGCACGAAACCACCAGT 58.601 45.000 0.00 0.00 0.00 4.00
3469 3613 1.398692 ATTGCACGAAACCACCAGTT 58.601 45.000 0.00 0.00 41.81 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 2.327940 GGTGCTGCACGTGTGAAC 59.672 61.111 24.86 14.45 34.83 3.18
61 62 3.421888 GCACGTGTGAATGAAACATCAAC 59.578 43.478 18.38 0.00 0.00 3.18
62 63 3.626977 GCACGTGTGAATGAAACATCAA 58.373 40.909 18.38 0.00 0.00 2.57
84 85 3.023591 GCTGCTAAACGACGGTGCC 62.024 63.158 0.00 0.00 0.00 5.01
90 91 6.687105 CCAGTAATTTAATGCTGCTAAACGAC 59.313 38.462 0.00 1.24 0.00 4.34
108 109 4.207165 GTGTGGACAATATGCCCAGTAAT 58.793 43.478 0.00 0.00 27.85 1.89
116 117 0.247655 CGCACGTGTGGACAATATGC 60.248 55.000 21.32 0.00 0.00 3.14
122 123 3.153270 TTAGGCGCACGTGTGGACA 62.153 57.895 28.77 6.89 0.00 4.02
206 209 8.517878 ACAATCAGTTCTTAATGATTCCAACTG 58.482 33.333 13.52 13.52 42.73 3.16
230 233 4.666397 TTAGCCAACCGCGCGACA 62.666 61.111 34.63 4.50 44.76 4.35
357 362 8.635765 AACTATTCCAGCTCAATAAAAACTCA 57.364 30.769 0.00 0.00 0.00 3.41
368 374 5.376625 ACACAGAAAAACTATTCCAGCTCA 58.623 37.500 0.00 0.00 0.00 4.26
380 387 2.601314 GCCCGTTTGAACACAGAAAAAC 59.399 45.455 0.00 0.00 0.00 2.43
450 458 9.174166 CCCAAAGTTATTGCAGTACTATTAGTT 57.826 33.333 0.85 0.00 0.00 2.24
456 464 4.850680 CCCCCAAAGTTATTGCAGTACTA 58.149 43.478 0.00 0.00 0.00 1.82
473 481 1.454847 GCGGTGATTTATGCCCCCA 60.455 57.895 0.00 0.00 0.00 4.96
474 482 0.755327 AAGCGGTGATTTATGCCCCC 60.755 55.000 0.00 0.00 0.00 5.40
503 511 5.683876 AGGCCACTACATGATATATGACC 57.316 43.478 5.01 0.00 0.00 4.02
618 626 4.822026 AGAGCACCTTACATGAACTGTAC 58.178 43.478 0.00 0.00 40.06 2.90
680 688 2.561378 TACCATGAGAGGGGTGGGGG 62.561 65.000 0.00 0.00 38.06 5.40
685 693 3.645053 ATCTGATACCATGAGAGGGGT 57.355 47.619 0.00 0.00 41.21 4.95
825 860 1.605710 CAACAAAGCCTCAGGACTGTG 59.394 52.381 0.00 0.00 0.00 3.66
826 861 1.212935 ACAACAAAGCCTCAGGACTGT 59.787 47.619 0.00 0.00 0.00 3.55
879 916 1.927895 AAGATGCTCGTTTCGCTAGG 58.072 50.000 0.00 0.00 0.00 3.02
884 921 3.123621 ACAGCTTTAAGATGCTCGTTTCG 59.876 43.478 10.32 0.00 34.41 3.46
885 922 4.390297 AGACAGCTTTAAGATGCTCGTTTC 59.610 41.667 10.32 0.00 34.41 2.78
886 923 4.153117 CAGACAGCTTTAAGATGCTCGTTT 59.847 41.667 10.32 0.00 34.41 3.60
887 924 3.681897 CAGACAGCTTTAAGATGCTCGTT 59.318 43.478 10.32 0.00 34.41 3.85
888 925 3.257393 CAGACAGCTTTAAGATGCTCGT 58.743 45.455 10.32 0.00 34.41 4.18
982 1038 9.112725 CAGTGACATGAATTGACCATTAGAATA 57.887 33.333 0.00 0.00 0.00 1.75
995 1051 3.057969 TCGCCTTCAGTGACATGAATT 57.942 42.857 0.00 0.00 38.47 2.17
1217 1273 6.854892 GCAGAGCATTAGCACATAACTTATTG 59.145 38.462 0.00 0.00 45.49 1.90
1347 1416 3.057946 GGAAAGAAACGCAGCTTTGAGAT 60.058 43.478 0.00 0.00 34.69 2.75
1348 1417 2.290641 GGAAAGAAACGCAGCTTTGAGA 59.709 45.455 0.00 0.00 34.69 3.27
1349 1418 2.291741 AGGAAAGAAACGCAGCTTTGAG 59.708 45.455 0.00 0.00 34.69 3.02
1350 1419 2.297701 AGGAAAGAAACGCAGCTTTGA 58.702 42.857 0.00 0.00 34.69 2.69
1351 1420 2.781945 AGGAAAGAAACGCAGCTTTG 57.218 45.000 0.00 0.00 34.69 2.77
1357 1432 6.694447 AGTAGTGTAATAGGAAAGAAACGCA 58.306 36.000 0.00 0.00 0.00 5.24
1397 1472 4.046286 ACATGCCCAGGTTCAGATTAAA 57.954 40.909 0.00 0.00 0.00 1.52
1402 1521 1.278985 CTGTACATGCCCAGGTTCAGA 59.721 52.381 12.36 0.00 41.06 3.27
1523 1642 8.891671 AACTAAACTAAAGTATGGACGACAAA 57.108 30.769 0.00 0.00 0.00 2.83
1582 1701 3.766591 TGAAAAACCCTGCAGAAACAAGA 59.233 39.130 17.39 0.00 0.00 3.02
1597 1719 8.484799 GGATGGAAAATTTTAGTCGTGAAAAAC 58.515 33.333 2.75 0.00 30.03 2.43
1627 1749 6.986231 CACATATCTCACCACTAGTTGCAATA 59.014 38.462 0.59 0.00 0.00 1.90
1836 1961 4.455533 CACTACCTGTCAGCAAGCAATTTA 59.544 41.667 0.00 0.00 0.00 1.40
1955 2080 7.678947 AATGAAGTTGAAGATTACTGACCTG 57.321 36.000 0.00 0.00 0.00 4.00
1995 2120 1.291877 AAGACGTGAAGCACCGCATC 61.292 55.000 0.00 0.00 0.00 3.91
1999 2124 1.217882 AGAAAAGACGTGAAGCACCG 58.782 50.000 0.00 0.00 0.00 4.94
2023 2148 8.658840 AAACCCTAGCTCAATTTTAACCAATA 57.341 30.769 0.00 0.00 0.00 1.90
2024 2149 7.553504 AAACCCTAGCTCAATTTTAACCAAT 57.446 32.000 0.00 0.00 0.00 3.16
2025 2150 6.987403 AAACCCTAGCTCAATTTTAACCAA 57.013 33.333 0.00 0.00 0.00 3.67
2026 2151 6.325286 ACAAAACCCTAGCTCAATTTTAACCA 59.675 34.615 0.00 0.00 0.00 3.67
2048 2173 6.098982 AGGTGTTCCCATTGTTTTGAATACAA 59.901 34.615 3.79 3.79 39.58 2.41
2056 2181 5.279456 GCAATCTAGGTGTTCCCATTGTTTT 60.279 40.000 0.00 0.00 32.66 2.43
2065 2190 1.282157 AGGTGGCAATCTAGGTGTTCC 59.718 52.381 0.00 0.00 0.00 3.62
2077 2202 1.275291 GACAGTAGCAGTAGGTGGCAA 59.725 52.381 0.00 0.00 0.00 4.52
2084 2209 1.546029 TGCCACAGACAGTAGCAGTAG 59.454 52.381 0.00 0.00 39.97 2.57
2085 2210 1.627864 TGCCACAGACAGTAGCAGTA 58.372 50.000 0.00 0.00 39.97 2.74
2086 2211 0.758734 TTGCCACAGACAGTAGCAGT 59.241 50.000 0.00 0.00 45.38 4.40
2087 2212 1.270518 ACTTGCCACAGACAGTAGCAG 60.271 52.381 0.00 0.00 45.38 4.24
2088 2213 0.758734 ACTTGCCACAGACAGTAGCA 59.241 50.000 0.00 0.00 43.16 3.49
2089 2214 1.884235 AACTTGCCACAGACAGTAGC 58.116 50.000 0.00 0.00 35.27 3.58
2091 2216 3.006537 GGTCTAACTTGCCACAGACAGTA 59.993 47.826 0.00 0.00 39.33 2.74
2092 2217 2.224305 GGTCTAACTTGCCACAGACAGT 60.224 50.000 0.00 0.00 39.33 3.55
2093 2218 2.224281 TGGTCTAACTTGCCACAGACAG 60.224 50.000 0.00 0.00 39.33 3.51
2094 2219 1.765904 TGGTCTAACTTGCCACAGACA 59.234 47.619 0.00 0.00 39.33 3.41
2095 2220 2.037251 TCTGGTCTAACTTGCCACAGAC 59.963 50.000 0.00 0.00 37.32 3.51
2096 2221 2.037251 GTCTGGTCTAACTTGCCACAGA 59.963 50.000 0.00 0.00 0.00 3.41
2097 2222 2.417719 GTCTGGTCTAACTTGCCACAG 58.582 52.381 0.00 0.00 0.00 3.66
2122 2247 1.807981 CGCGCCAGATGTTTCGGTA 60.808 57.895 0.00 0.00 0.00 4.02
2137 2262 0.381089 AGTAACTAGCTACAGCCGCG 59.619 55.000 0.00 0.00 43.38 6.46
2252 2377 1.210478 GGCCCTTATTCAGAGCTGTCA 59.790 52.381 0.00 0.00 0.00 3.58
2254 2379 1.211457 CTGGCCCTTATTCAGAGCTGT 59.789 52.381 0.00 0.00 0.00 4.40
2292 2417 2.236766 CCGGTAGAGGTCGATATTGGT 58.763 52.381 0.00 0.00 0.00 3.67
2301 2426 1.439679 CTTTTGTGCCGGTAGAGGTC 58.560 55.000 1.90 0.00 0.00 3.85
2337 2462 2.125512 GCAGCGTTCCGATCCTGT 60.126 61.111 0.00 0.00 0.00 4.00
2576 2709 3.086733 GAAGCAATCCTTCCCTCGG 57.913 57.895 0.00 0.00 43.39 4.63
2620 2753 1.008538 CAGTTTGGCTCAACACGGC 60.009 57.895 3.48 0.00 0.00 5.68
2623 2756 1.334869 CTCCACAGTTTGGCTCAACAC 59.665 52.381 0.00 0.00 46.47 3.32
2675 2810 4.499357 GCACCAGTAAAGTATAGAGGACCG 60.499 50.000 0.00 0.00 0.00 4.79
2682 2817 4.759782 ACAGCAGCACCAGTAAAGTATAG 58.240 43.478 0.00 0.00 0.00 1.31
2694 2829 1.510480 GACACAGGAACAGCAGCACC 61.510 60.000 0.00 0.00 0.00 5.01
2710 2845 6.349528 CCAATCATTAAATCACAGCACAGACA 60.350 38.462 0.00 0.00 0.00 3.41
2717 2852 6.798482 TCACATCCAATCATTAAATCACAGC 58.202 36.000 0.00 0.00 0.00 4.40
2791 2928 9.607285 GCGAAATTACTGTTTCTTTTCAGATAA 57.393 29.630 0.00 0.00 36.25 1.75
2902 3045 4.702831 TGTGTCTGTACTGATGCTCAAAA 58.297 39.130 5.69 0.00 0.00 2.44
2903 3046 4.335400 TGTGTCTGTACTGATGCTCAAA 57.665 40.909 5.69 0.00 0.00 2.69
2904 3047 4.335400 TTGTGTCTGTACTGATGCTCAA 57.665 40.909 5.69 5.09 0.00 3.02
2905 3048 4.058124 GTTTGTGTCTGTACTGATGCTCA 58.942 43.478 5.69 0.00 0.00 4.26
2906 3049 3.121944 CGTTTGTGTCTGTACTGATGCTC 59.878 47.826 5.69 0.00 0.00 4.26
2907 3050 3.059884 CGTTTGTGTCTGTACTGATGCT 58.940 45.455 5.69 0.00 0.00 3.79
2908 3051 2.411547 GCGTTTGTGTCTGTACTGATGC 60.412 50.000 5.69 3.20 0.00 3.91
2909 3052 3.059884 AGCGTTTGTGTCTGTACTGATG 58.940 45.455 5.69 0.00 0.00 3.07
2910 3053 3.243737 TGAGCGTTTGTGTCTGTACTGAT 60.244 43.478 5.69 0.00 0.00 2.90
2911 3054 2.100087 TGAGCGTTTGTGTCTGTACTGA 59.900 45.455 0.00 0.00 0.00 3.41
2912 3055 2.469826 TGAGCGTTTGTGTCTGTACTG 58.530 47.619 0.00 0.00 0.00 2.74
2913 3056 2.882927 TGAGCGTTTGTGTCTGTACT 57.117 45.000 0.00 0.00 0.00 2.73
2914 3057 5.803461 TGTATATGAGCGTTTGTGTCTGTAC 59.197 40.000 0.00 0.00 0.00 2.90
2915 3058 5.803461 GTGTATATGAGCGTTTGTGTCTGTA 59.197 40.000 0.00 0.00 0.00 2.74
2916 3059 4.625742 GTGTATATGAGCGTTTGTGTCTGT 59.374 41.667 0.00 0.00 0.00 3.41
2917 3060 4.259411 CGTGTATATGAGCGTTTGTGTCTG 60.259 45.833 0.00 0.00 0.00 3.51
2918 3061 3.857665 CGTGTATATGAGCGTTTGTGTCT 59.142 43.478 0.00 0.00 0.00 3.41
2919 3062 3.541516 GCGTGTATATGAGCGTTTGTGTC 60.542 47.826 0.00 0.00 0.00 3.67
2920 3063 2.347452 GCGTGTATATGAGCGTTTGTGT 59.653 45.455 0.00 0.00 0.00 3.72
2921 3064 2.594269 CGCGTGTATATGAGCGTTTGTG 60.594 50.000 0.00 0.00 46.48 3.33
2922 3065 1.586578 CGCGTGTATATGAGCGTTTGT 59.413 47.619 0.00 0.00 46.48 2.83
2923 3066 2.264207 CGCGTGTATATGAGCGTTTG 57.736 50.000 0.00 0.00 46.48 2.93
2928 3071 2.090658 GTGTATGCGCGTGTATATGAGC 59.909 50.000 13.61 0.41 38.85 4.26
2929 3072 3.565516 AGTGTATGCGCGTGTATATGAG 58.434 45.455 13.61 0.00 0.00 2.90
2930 3073 3.003897 TGAGTGTATGCGCGTGTATATGA 59.996 43.478 13.61 0.00 0.00 2.15
2931 3074 3.119628 GTGAGTGTATGCGCGTGTATATG 59.880 47.826 13.61 0.00 0.00 1.78
2932 3075 3.305964 GTGAGTGTATGCGCGTGTATAT 58.694 45.455 13.61 0.00 0.00 0.86
2933 3076 2.542205 GGTGAGTGTATGCGCGTGTATA 60.542 50.000 13.61 2.40 0.00 1.47
2934 3077 1.556564 GTGAGTGTATGCGCGTGTAT 58.443 50.000 13.61 4.63 0.00 2.29
2935 3078 0.457166 GGTGAGTGTATGCGCGTGTA 60.457 55.000 13.61 0.00 0.00 2.90
2936 3079 1.736645 GGTGAGTGTATGCGCGTGT 60.737 57.895 13.61 0.00 0.00 4.49
2937 3080 2.452813 GGGTGAGTGTATGCGCGTG 61.453 63.158 13.61 0.00 0.00 5.34
2938 3081 2.125673 GGGTGAGTGTATGCGCGT 60.126 61.111 8.43 7.55 0.00 6.01
2939 3082 2.011741 TAGGGGTGAGTGTATGCGCG 62.012 60.000 0.00 0.00 0.00 6.86
2940 3083 0.393077 ATAGGGGTGAGTGTATGCGC 59.607 55.000 0.00 0.00 0.00 6.09
2941 3084 1.686587 TCATAGGGGTGAGTGTATGCG 59.313 52.381 0.00 0.00 0.00 4.73
2942 3085 3.467803 GTTCATAGGGGTGAGTGTATGC 58.532 50.000 0.00 0.00 0.00 3.14
2943 3086 3.717707 CGTTCATAGGGGTGAGTGTATG 58.282 50.000 0.00 0.00 0.00 2.39
2944 3087 2.102588 GCGTTCATAGGGGTGAGTGTAT 59.897 50.000 0.00 0.00 0.00 2.29
2945 3088 1.479323 GCGTTCATAGGGGTGAGTGTA 59.521 52.381 0.00 0.00 0.00 2.90
2946 3089 0.249398 GCGTTCATAGGGGTGAGTGT 59.751 55.000 0.00 0.00 0.00 3.55
2947 3090 0.249120 TGCGTTCATAGGGGTGAGTG 59.751 55.000 0.00 0.00 0.00 3.51
2948 3091 0.981183 TTGCGTTCATAGGGGTGAGT 59.019 50.000 0.00 0.00 0.00 3.41
2949 3092 1.066143 AGTTGCGTTCATAGGGGTGAG 60.066 52.381 0.00 0.00 0.00 3.51
2950 3093 0.981183 AGTTGCGTTCATAGGGGTGA 59.019 50.000 0.00 0.00 0.00 4.02
2951 3094 1.338674 TGAGTTGCGTTCATAGGGGTG 60.339 52.381 0.00 0.00 0.00 4.61
2952 3095 0.981183 TGAGTTGCGTTCATAGGGGT 59.019 50.000 0.00 0.00 0.00 4.95
2953 3096 1.369625 GTGAGTTGCGTTCATAGGGG 58.630 55.000 0.00 0.00 0.00 4.79
2954 3097 1.369625 GGTGAGTTGCGTTCATAGGG 58.630 55.000 0.00 0.00 0.00 3.53
2955 3098 1.369625 GGGTGAGTTGCGTTCATAGG 58.630 55.000 0.00 0.00 0.00 2.57
2956 3099 1.066143 AGGGGTGAGTTGCGTTCATAG 60.066 52.381 0.00 0.00 0.00 2.23
2957 3100 0.981183 AGGGGTGAGTTGCGTTCATA 59.019 50.000 0.00 0.00 0.00 2.15
2958 3101 0.981183 TAGGGGTGAGTTGCGTTCAT 59.019 50.000 0.00 0.00 0.00 2.57
2959 3102 0.981183 ATAGGGGTGAGTTGCGTTCA 59.019 50.000 0.00 0.00 0.00 3.18
2960 3103 1.066430 TCATAGGGGTGAGTTGCGTTC 60.066 52.381 0.00 0.00 0.00 3.95
2961 3104 0.981183 TCATAGGGGTGAGTTGCGTT 59.019 50.000 0.00 0.00 0.00 4.84
2962 3105 0.981183 TTCATAGGGGTGAGTTGCGT 59.019 50.000 0.00 0.00 0.00 5.24
2963 3106 1.369625 GTTCATAGGGGTGAGTTGCG 58.630 55.000 0.00 0.00 0.00 4.85
2964 3107 1.369625 CGTTCATAGGGGTGAGTTGC 58.630 55.000 0.00 0.00 0.00 4.17
2965 3108 1.338674 TGCGTTCATAGGGGTGAGTTG 60.339 52.381 0.00 0.00 0.00 3.16
2966 3109 0.981183 TGCGTTCATAGGGGTGAGTT 59.019 50.000 0.00 0.00 0.00 3.01
2967 3110 0.249398 GTGCGTTCATAGGGGTGAGT 59.751 55.000 0.00 0.00 0.00 3.41
2968 3111 0.249120 TGTGCGTTCATAGGGGTGAG 59.751 55.000 0.00 0.00 0.00 3.51
2969 3112 0.036765 GTGTGCGTTCATAGGGGTGA 60.037 55.000 0.00 0.00 0.00 4.02
2970 3113 0.321210 TGTGTGCGTTCATAGGGGTG 60.321 55.000 0.00 0.00 0.00 4.61
2971 3114 0.321298 GTGTGTGCGTTCATAGGGGT 60.321 55.000 0.00 0.00 0.00 4.95
2972 3115 1.358725 CGTGTGTGCGTTCATAGGGG 61.359 60.000 0.00 0.00 0.00 4.79
2973 3116 1.966493 GCGTGTGTGCGTTCATAGGG 61.966 60.000 0.00 0.00 0.00 3.53
2974 3117 1.288419 TGCGTGTGTGCGTTCATAGG 61.288 55.000 0.00 0.00 37.81 2.57
2975 3118 0.179250 GTGCGTGTGTGCGTTCATAG 60.179 55.000 0.00 0.00 37.81 2.23
2976 3119 0.876342 TGTGCGTGTGTGCGTTCATA 60.876 50.000 0.00 0.00 37.81 2.15
2977 3120 2.176926 TGTGCGTGTGTGCGTTCAT 61.177 52.632 0.00 0.00 37.81 2.57
2978 3121 2.815647 TGTGCGTGTGTGCGTTCA 60.816 55.556 0.00 0.00 37.81 3.18
2979 3122 2.350760 GTGTGCGTGTGTGCGTTC 60.351 61.111 0.00 0.00 37.81 3.95
2980 3123 3.871574 GGTGTGCGTGTGTGCGTT 61.872 61.111 0.00 0.00 37.81 4.84
2983 3126 2.280524 TAGGGTGTGCGTGTGTGC 60.281 61.111 0.00 0.00 0.00 4.57
2984 3127 1.959226 GGTAGGGTGTGCGTGTGTG 60.959 63.158 0.00 0.00 0.00 3.82
2985 3128 2.424302 GGTAGGGTGTGCGTGTGT 59.576 61.111 0.00 0.00 0.00 3.72
2986 3129 2.358247 GGGTAGGGTGTGCGTGTG 60.358 66.667 0.00 0.00 0.00 3.82
2987 3130 2.735151 TAGGGGTAGGGTGTGCGTGT 62.735 60.000 0.00 0.00 0.00 4.49
2988 3131 1.335132 ATAGGGGTAGGGTGTGCGTG 61.335 60.000 0.00 0.00 0.00 5.34
2989 3132 1.002533 ATAGGGGTAGGGTGTGCGT 59.997 57.895 0.00 0.00 0.00 5.24
2990 3133 1.046472 TCATAGGGGTAGGGTGTGCG 61.046 60.000 0.00 0.00 0.00 5.34
2991 3134 0.759346 CTCATAGGGGTAGGGTGTGC 59.241 60.000 0.00 0.00 0.00 4.57
2992 3135 0.759346 GCTCATAGGGGTAGGGTGTG 59.241 60.000 0.00 0.00 0.00 3.82
2993 3136 0.341961 TGCTCATAGGGGTAGGGTGT 59.658 55.000 0.00 0.00 0.00 4.16
2994 3137 0.759346 GTGCTCATAGGGGTAGGGTG 59.241 60.000 0.00 0.00 0.00 4.61
2995 3138 0.400093 GGTGCTCATAGGGGTAGGGT 60.400 60.000 0.00 0.00 0.00 4.34
2996 3139 0.104934 AGGTGCTCATAGGGGTAGGG 60.105 60.000 0.00 0.00 0.00 3.53
2997 3140 1.343069 GAGGTGCTCATAGGGGTAGG 58.657 60.000 0.00 0.00 0.00 3.18
2998 3141 1.343069 GGAGGTGCTCATAGGGGTAG 58.657 60.000 0.00 0.00 31.08 3.18
2999 3142 0.469331 CGGAGGTGCTCATAGGGGTA 60.469 60.000 0.00 0.00 31.08 3.69
3000 3143 1.762460 CGGAGGTGCTCATAGGGGT 60.762 63.158 0.00 0.00 31.08 4.95
3001 3144 1.457643 TCGGAGGTGCTCATAGGGG 60.458 63.158 0.00 0.00 31.08 4.79
3002 3145 0.468214 TCTCGGAGGTGCTCATAGGG 60.468 60.000 4.96 0.00 31.08 3.53
3003 3146 0.958091 CTCTCGGAGGTGCTCATAGG 59.042 60.000 4.96 0.00 31.08 2.57
3004 3147 1.606668 GTCTCTCGGAGGTGCTCATAG 59.393 57.143 4.96 0.00 31.08 2.23
3005 3148 1.213182 AGTCTCTCGGAGGTGCTCATA 59.787 52.381 4.96 0.00 31.08 2.15
3006 3149 0.033601 AGTCTCTCGGAGGTGCTCAT 60.034 55.000 4.96 0.00 31.08 2.90
3007 3150 0.962855 CAGTCTCTCGGAGGTGCTCA 60.963 60.000 4.96 0.00 31.08 4.26
3008 3151 0.678366 TCAGTCTCTCGGAGGTGCTC 60.678 60.000 4.96 0.00 0.00 4.26
3009 3152 0.679640 CTCAGTCTCTCGGAGGTGCT 60.680 60.000 4.96 0.00 35.32 4.40
3010 3153 1.806568 CTCAGTCTCTCGGAGGTGC 59.193 63.158 4.96 0.00 35.32 5.01
3011 3154 1.662438 GGCTCAGTCTCTCGGAGGTG 61.662 65.000 4.96 0.00 38.48 4.00
3012 3155 1.379309 GGCTCAGTCTCTCGGAGGT 60.379 63.158 4.96 0.00 38.48 3.85
3013 3156 2.477176 CGGCTCAGTCTCTCGGAGG 61.477 68.421 4.96 0.00 38.48 4.30
3014 3157 2.477176 CCGGCTCAGTCTCTCGGAG 61.477 68.421 0.00 0.00 42.94 4.63
3015 3158 2.438614 CCGGCTCAGTCTCTCGGA 60.439 66.667 0.00 0.00 42.94 4.55
3016 3159 4.200283 GCCGGCTCAGTCTCTCGG 62.200 72.222 22.15 0.00 43.13 4.63
3017 3160 1.448119 TATGCCGGCTCAGTCTCTCG 61.448 60.000 29.70 0.00 0.00 4.04
3018 3161 0.965439 ATATGCCGGCTCAGTCTCTC 59.035 55.000 29.70 0.00 0.00 3.20
3019 3162 0.965439 GATATGCCGGCTCAGTCTCT 59.035 55.000 29.70 3.16 0.00 3.10
3020 3163 0.676184 TGATATGCCGGCTCAGTCTC 59.324 55.000 29.70 15.31 0.00 3.36
3021 3164 1.274728 GATGATATGCCGGCTCAGTCT 59.725 52.381 29.70 8.26 0.00 3.24
3022 3165 1.274728 AGATGATATGCCGGCTCAGTC 59.725 52.381 29.70 19.55 0.00 3.51
3023 3166 1.346062 AGATGATATGCCGGCTCAGT 58.654 50.000 29.70 13.44 0.00 3.41
3024 3167 2.289257 TGAAGATGATATGCCGGCTCAG 60.289 50.000 29.70 0.00 0.00 3.35
3025 3168 1.693606 TGAAGATGATATGCCGGCTCA 59.306 47.619 29.70 23.34 0.00 4.26
3026 3169 2.028658 TCTGAAGATGATATGCCGGCTC 60.029 50.000 29.70 17.89 0.00 4.70
3027 3170 1.973515 TCTGAAGATGATATGCCGGCT 59.026 47.619 29.70 15.76 0.00 5.52
3028 3171 2.462456 TCTGAAGATGATATGCCGGC 57.538 50.000 22.73 22.73 0.00 6.13
3029 3172 5.062683 CGTAAATCTGAAGATGATATGCCGG 59.937 44.000 0.00 0.00 34.49 6.13
3030 3173 5.863935 TCGTAAATCTGAAGATGATATGCCG 59.136 40.000 0.00 0.00 34.49 5.69
3031 3174 7.386299 ACTTCGTAAATCTGAAGATGATATGCC 59.614 37.037 8.79 0.00 43.34 4.40
3032 3175 8.304202 ACTTCGTAAATCTGAAGATGATATGC 57.696 34.615 8.79 0.00 43.34 3.14
3033 3176 8.634265 CGACTTCGTAAATCTGAAGATGATATG 58.366 37.037 8.79 0.00 43.34 1.78
3034 3177 7.327275 GCGACTTCGTAAATCTGAAGATGATAT 59.673 37.037 8.79 0.00 43.34 1.63
3035 3178 6.637254 GCGACTTCGTAAATCTGAAGATGATA 59.363 38.462 8.79 0.00 43.34 2.15
3036 3179 5.460419 GCGACTTCGTAAATCTGAAGATGAT 59.540 40.000 8.79 0.00 43.34 2.45
3037 3180 4.798907 GCGACTTCGTAAATCTGAAGATGA 59.201 41.667 8.79 0.00 43.34 2.92
3038 3181 4.026475 GGCGACTTCGTAAATCTGAAGATG 60.026 45.833 8.79 2.41 43.34 2.90
3039 3182 4.113354 GGCGACTTCGTAAATCTGAAGAT 58.887 43.478 8.79 0.00 43.34 2.40
3040 3183 3.508762 GGCGACTTCGTAAATCTGAAGA 58.491 45.455 8.79 0.00 43.34 2.87
3041 3184 2.603560 GGGCGACTTCGTAAATCTGAAG 59.396 50.000 0.00 0.71 45.53 3.02
3042 3185 2.232941 AGGGCGACTTCGTAAATCTGAA 59.767 45.455 0.00 0.00 42.22 3.02
3043 3186 1.822990 AGGGCGACTTCGTAAATCTGA 59.177 47.619 0.00 0.00 42.22 3.27
3044 3187 2.295253 AGGGCGACTTCGTAAATCTG 57.705 50.000 0.00 0.00 42.22 2.90
3045 3188 2.361438 CCTAGGGCGACTTCGTAAATCT 59.639 50.000 0.00 0.00 42.22 2.40
3046 3189 2.740452 CCTAGGGCGACTTCGTAAATC 58.260 52.381 0.00 0.00 42.22 2.17
3047 3190 1.202498 GCCTAGGGCGACTTCGTAAAT 60.202 52.381 11.72 0.00 39.62 1.40
3048 3191 0.174162 GCCTAGGGCGACTTCGTAAA 59.826 55.000 11.72 0.00 39.62 2.01
3049 3192 1.811860 GCCTAGGGCGACTTCGTAA 59.188 57.895 11.72 0.00 39.62 3.18
3050 3193 3.518003 GCCTAGGGCGACTTCGTA 58.482 61.111 11.72 0.00 39.62 3.43
3061 3204 4.253257 GACGACGAGGCGCCTAGG 62.253 72.222 35.29 28.55 33.86 3.02
3072 3215 1.866496 GACGTTCCCATCGACGACG 60.866 63.158 0.00 0.00 41.53 5.12
3073 3216 0.522915 GAGACGTTCCCATCGACGAC 60.523 60.000 0.00 0.00 41.53 4.34
3074 3217 1.651240 GGAGACGTTCCCATCGACGA 61.651 60.000 0.00 0.00 41.53 4.20
3075 3218 1.226603 GGAGACGTTCCCATCGACG 60.227 63.158 0.00 0.00 44.34 5.12
3076 3219 4.808649 GGAGACGTTCCCATCGAC 57.191 61.111 0.00 0.00 40.37 4.20
3084 3227 3.586892 CTTTTAGTGGGAGGAGACGTTC 58.413 50.000 0.00 0.00 0.00 3.95
3085 3228 2.289506 GCTTTTAGTGGGAGGAGACGTT 60.290 50.000 0.00 0.00 0.00 3.99
3086 3229 1.275573 GCTTTTAGTGGGAGGAGACGT 59.724 52.381 0.00 0.00 0.00 4.34
3087 3230 1.275291 TGCTTTTAGTGGGAGGAGACG 59.725 52.381 0.00 0.00 0.00 4.18
3088 3231 2.038557 TGTGCTTTTAGTGGGAGGAGAC 59.961 50.000 0.00 0.00 0.00 3.36
3089 3232 2.334977 TGTGCTTTTAGTGGGAGGAGA 58.665 47.619 0.00 0.00 0.00 3.71
3090 3233 2.859165 TGTGCTTTTAGTGGGAGGAG 57.141 50.000 0.00 0.00 0.00 3.69
3091 3234 2.354704 CGATGTGCTTTTAGTGGGAGGA 60.355 50.000 0.00 0.00 0.00 3.71
3092 3235 2.009774 CGATGTGCTTTTAGTGGGAGG 58.990 52.381 0.00 0.00 0.00 4.30
3093 3236 1.398390 GCGATGTGCTTTTAGTGGGAG 59.602 52.381 0.00 0.00 41.73 4.30
3094 3237 1.448985 GCGATGTGCTTTTAGTGGGA 58.551 50.000 0.00 0.00 41.73 4.37
3095 3238 0.451783 GGCGATGTGCTTTTAGTGGG 59.548 55.000 0.00 0.00 45.43 4.61
3096 3239 1.131126 CTGGCGATGTGCTTTTAGTGG 59.869 52.381 0.00 0.00 45.43 4.00
3097 3240 2.076100 TCTGGCGATGTGCTTTTAGTG 58.924 47.619 0.00 0.00 45.43 2.74
3098 3241 2.472695 TCTGGCGATGTGCTTTTAGT 57.527 45.000 0.00 0.00 45.43 2.24
3099 3242 3.829886 TTTCTGGCGATGTGCTTTTAG 57.170 42.857 0.00 0.00 45.43 1.85
3100 3243 3.128589 GGATTTCTGGCGATGTGCTTTTA 59.871 43.478 0.00 0.00 45.43 1.52
3101 3244 2.094545 GGATTTCTGGCGATGTGCTTTT 60.095 45.455 0.00 0.00 45.43 2.27
3102 3245 1.474077 GGATTTCTGGCGATGTGCTTT 59.526 47.619 0.00 0.00 45.43 3.51
3103 3246 1.098050 GGATTTCTGGCGATGTGCTT 58.902 50.000 0.00 0.00 45.43 3.91
3104 3247 0.254178 AGGATTTCTGGCGATGTGCT 59.746 50.000 0.00 0.00 45.43 4.40
3105 3248 0.379669 CAGGATTTCTGGCGATGTGC 59.620 55.000 0.00 0.00 45.38 4.57
3106 3249 2.028420 TCAGGATTTCTGGCGATGTG 57.972 50.000 0.00 0.00 43.53 3.21
3107 3250 2.787473 TTCAGGATTTCTGGCGATGT 57.213 45.000 0.00 0.00 43.53 3.06
3108 3251 5.756195 TTATTTCAGGATTTCTGGCGATG 57.244 39.130 0.00 0.00 43.53 3.84
3109 3252 6.966534 ATTTATTTCAGGATTTCTGGCGAT 57.033 33.333 0.00 0.00 43.53 4.58
3110 3253 6.376864 TGAATTTATTTCAGGATTTCTGGCGA 59.623 34.615 0.00 0.00 43.53 5.54
3111 3254 6.563422 TGAATTTATTTCAGGATTTCTGGCG 58.437 36.000 0.00 0.00 43.53 5.69
3123 3266 7.862372 GCTCGCATTATTCCTGAATTTATTTCA 59.138 33.333 0.00 0.00 42.09 2.69
3124 3267 7.862372 TGCTCGCATTATTCCTGAATTTATTTC 59.138 33.333 0.00 0.00 34.72 2.17
3125 3268 7.715657 TGCTCGCATTATTCCTGAATTTATTT 58.284 30.769 0.00 0.00 32.50 1.40
3126 3269 7.275888 TGCTCGCATTATTCCTGAATTTATT 57.724 32.000 0.00 0.00 32.50 1.40
3127 3270 6.882610 TGCTCGCATTATTCCTGAATTTAT 57.117 33.333 0.00 0.00 32.50 1.40
3128 3271 6.486320 TGATGCTCGCATTATTCCTGAATTTA 59.514 34.615 5.79 0.00 36.70 1.40
3129 3272 5.300034 TGATGCTCGCATTATTCCTGAATTT 59.700 36.000 5.79 0.00 36.70 1.82
3130 3273 4.823442 TGATGCTCGCATTATTCCTGAATT 59.177 37.500 5.79 0.00 36.70 2.17
3131 3274 4.392047 TGATGCTCGCATTATTCCTGAAT 58.608 39.130 5.79 0.00 36.70 2.57
3132 3275 3.807553 TGATGCTCGCATTATTCCTGAA 58.192 40.909 5.79 0.00 36.70 3.02
3133 3276 3.396560 CTGATGCTCGCATTATTCCTGA 58.603 45.455 5.79 0.00 36.70 3.86
3134 3277 2.483106 CCTGATGCTCGCATTATTCCTG 59.517 50.000 5.79 0.00 36.70 3.86
3135 3278 2.369860 TCCTGATGCTCGCATTATTCCT 59.630 45.455 5.79 0.00 36.70 3.36
3136 3279 2.771089 TCCTGATGCTCGCATTATTCC 58.229 47.619 5.79 0.00 36.70 3.01
3137 3280 5.049198 TCAAATCCTGATGCTCGCATTATTC 60.049 40.000 5.79 0.00 36.70 1.75
3138 3281 4.823442 TCAAATCCTGATGCTCGCATTATT 59.177 37.500 5.79 2.29 36.70 1.40
3139 3282 4.392047 TCAAATCCTGATGCTCGCATTAT 58.608 39.130 5.79 0.00 36.70 1.28
3140 3283 3.807553 TCAAATCCTGATGCTCGCATTA 58.192 40.909 5.79 0.89 36.70 1.90
3141 3284 2.646930 TCAAATCCTGATGCTCGCATT 58.353 42.857 5.79 0.00 36.70 3.56
3142 3285 2.336945 TCAAATCCTGATGCTCGCAT 57.663 45.000 3.70 3.70 39.69 4.73
3143 3286 1.739466 GTTCAAATCCTGATGCTCGCA 59.261 47.619 0.00 0.00 32.78 5.10
3144 3287 1.064654 GGTTCAAATCCTGATGCTCGC 59.935 52.381 0.00 0.00 32.78 5.03
3145 3288 1.672881 GGGTTCAAATCCTGATGCTCG 59.327 52.381 0.00 0.00 32.78 5.03
3146 3289 3.010200 AGGGTTCAAATCCTGATGCTC 57.990 47.619 0.00 0.00 38.36 4.26
3164 3307 2.612493 CCTACCCCAACCCACCAGG 61.612 68.421 0.00 0.00 43.78 4.45
3165 3308 2.612493 CCCTACCCCAACCCACCAG 61.612 68.421 0.00 0.00 0.00 4.00
3166 3309 2.533232 CCCTACCCCAACCCACCA 60.533 66.667 0.00 0.00 0.00 4.17
3167 3310 2.533492 ACCCTACCCCAACCCACC 60.533 66.667 0.00 0.00 0.00 4.61
3168 3311 2.158130 ACACCCTACCCCAACCCAC 61.158 63.158 0.00 0.00 0.00 4.61
3169 3312 2.157452 CACACCCTACCCCAACCCA 61.157 63.158 0.00 0.00 0.00 4.51
3170 3313 1.212250 ATCACACCCTACCCCAACCC 61.212 60.000 0.00 0.00 0.00 4.11
3171 3314 0.034477 CATCACACCCTACCCCAACC 60.034 60.000 0.00 0.00 0.00 3.77
3172 3315 0.696501 ACATCACACCCTACCCCAAC 59.303 55.000 0.00 0.00 0.00 3.77
3173 3316 1.074727 CAACATCACACCCTACCCCAA 59.925 52.381 0.00 0.00 0.00 4.12
3174 3317 0.695924 CAACATCACACCCTACCCCA 59.304 55.000 0.00 0.00 0.00 4.96
3175 3318 0.988832 TCAACATCACACCCTACCCC 59.011 55.000 0.00 0.00 0.00 4.95
3176 3319 2.871096 TTCAACATCACACCCTACCC 57.129 50.000 0.00 0.00 0.00 3.69
3177 3320 4.522789 ACAAATTCAACATCACACCCTACC 59.477 41.667 0.00 0.00 0.00 3.18
3178 3321 5.705609 ACAAATTCAACATCACACCCTAC 57.294 39.130 0.00 0.00 0.00 3.18
3179 3322 6.723298 AAACAAATTCAACATCACACCCTA 57.277 33.333 0.00 0.00 0.00 3.53
3180 3323 5.612725 AAACAAATTCAACATCACACCCT 57.387 34.783 0.00 0.00 0.00 4.34
3181 3324 5.584251 ACAAAACAAATTCAACATCACACCC 59.416 36.000 0.00 0.00 0.00 4.61
3184 3327 8.376203 CGTTAACAAAACAAATTCAACATCACA 58.624 29.630 6.39 0.00 0.00 3.58
3203 3346 6.500910 ACGCTCATAATATGACTCGTTAACA 58.499 36.000 15.44 0.00 39.05 2.41
3319 3462 4.415881 TCAGATTCTTAATGCCGCCTAA 57.584 40.909 0.00 0.00 0.00 2.69
3403 3546 2.037772 AGTTTGCTGTTCTCCACGAGAT 59.962 45.455 0.00 0.00 38.56 2.75
3414 3557 2.037772 AGGACGATCTCAGTTTGCTGTT 59.962 45.455 0.00 0.00 43.05 3.16
3444 3588 3.003897 TGGTGGTTTCGTGCAATTTACTC 59.996 43.478 0.00 0.00 0.00 2.59
3445 3589 2.952978 TGGTGGTTTCGTGCAATTTACT 59.047 40.909 0.00 0.00 0.00 2.24
3446 3590 3.243267 ACTGGTGGTTTCGTGCAATTTAC 60.243 43.478 0.00 0.00 0.00 2.01
3447 3591 2.952978 ACTGGTGGTTTCGTGCAATTTA 59.047 40.909 0.00 0.00 0.00 1.40
3448 3592 1.754226 ACTGGTGGTTTCGTGCAATTT 59.246 42.857 0.00 0.00 0.00 1.82
3449 3593 1.398692 ACTGGTGGTTTCGTGCAATT 58.601 45.000 0.00 0.00 0.00 2.32
3450 3594 1.398692 AACTGGTGGTTTCGTGCAAT 58.601 45.000 0.00 0.00 33.90 3.56
3451 3595 1.135257 CAAACTGGTGGTTTCGTGCAA 60.135 47.619 0.00 0.00 45.26 4.08
3452 3596 0.453793 CAAACTGGTGGTTTCGTGCA 59.546 50.000 0.00 0.00 45.26 4.57
3453 3597 0.736053 TCAAACTGGTGGTTTCGTGC 59.264 50.000 0.00 0.00 45.26 5.34
3454 3598 2.223479 CCTTCAAACTGGTGGTTTCGTG 60.223 50.000 0.00 0.00 45.26 4.35
3455 3599 2.021457 CCTTCAAACTGGTGGTTTCGT 58.979 47.619 0.00 0.00 45.26 3.85
3456 3600 2.774439 CCTTCAAACTGGTGGTTTCG 57.226 50.000 0.00 0.00 45.26 3.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.