Multiple sequence alignment - TraesCS7A01G489900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G489900 chr7A 100.000 4749 0 0 1 4749 679822036 679817288 0.000000e+00 8770.0
1 TraesCS7A01G489900 chr7B 88.124 2745 214 59 1359 4067 659655072 659652404 0.000000e+00 3160.0
2 TraesCS7A01G489900 chr7B 93.012 644 38 2 4113 4749 659652314 659651671 0.000000e+00 933.0
3 TraesCS7A01G489900 chr7B 84.211 608 28 24 817 1372 659655700 659655109 3.250000e-146 529.0
4 TraesCS7A01G489900 chr7B 80.671 507 66 21 1673 2174 659938637 659938158 9.710000e-97 364.0
5 TraesCS7A01G489900 chr7B 81.707 164 23 5 1386 1544 659938904 659938743 3.860000e-26 130.0
6 TraesCS7A01G489900 chr7D 94.056 1329 58 9 3392 4709 587850649 587849331 0.000000e+00 1997.0
7 TraesCS7A01G489900 chr7D 94.331 1129 36 13 2257 3384 587851811 587850710 0.000000e+00 1705.0
8 TraesCS7A01G489900 chr7D 84.272 941 66 33 1366 2258 587852765 587851859 0.000000e+00 843.0
9 TraesCS7A01G489900 chr7D 80.379 581 59 37 814 1372 587853357 587852810 1.600000e-104 390.0
10 TraesCS7A01G489900 chr7D 81.995 411 50 12 1770 2174 587921371 587920979 1.270000e-85 327.0
11 TraesCS7A01G489900 chr7D 87.500 240 23 6 460 699 165930475 165930243 2.180000e-68 270.0
12 TraesCS7A01G489900 chr7D 86.047 258 27 8 457 711 126818679 126818428 7.830000e-68 268.0
13 TraesCS7A01G489900 chr7D 76.292 329 46 17 37 362 587853849 587853550 3.830000e-31 147.0
14 TraesCS7A01G489900 chr5B 87.801 582 50 8 1686 2260 16395400 16394833 0.000000e+00 662.0
15 TraesCS7A01G489900 chr5B 87.205 297 26 5 1373 1660 16405143 16404850 1.270000e-85 327.0
16 TraesCS7A01G489900 chr5B 87.069 116 10 3 1258 1372 16405323 16405212 4.990000e-25 126.0
17 TraesCS7A01G489900 chr2B 84.300 707 77 16 1561 2260 124151106 124151785 0.000000e+00 660.0
18 TraesCS7A01G489900 chr2B 86.722 241 20 8 462 699 563187467 563187698 1.700000e-64 257.0
19 TraesCS7A01G489900 chrUn 84.899 298 31 13 399 687 143849950 143850242 6.010000e-74 289.0
20 TraesCS7A01G489900 chr5D 87.917 240 25 4 460 699 13898089 13897854 3.620000e-71 279.0
21 TraesCS7A01G489900 chr1A 89.908 218 18 4 463 680 506853200 506852987 1.300000e-70 278.0
22 TraesCS7A01G489900 chr2D 87.395 238 23 6 457 691 31819158 31818925 2.820000e-67 267.0
23 TraesCS7A01G489900 chr3A 84.586 266 33 7 457 718 719392814 719393075 1.700000e-64 257.0
24 TraesCS7A01G489900 chr5A 84.030 263 33 8 460 718 703191213 703190956 1.320000e-60 244.0
25 TraesCS7A01G489900 chr6D 91.803 61 4 1 398 457 414774522 414774582 3.050000e-12 84.2
26 TraesCS7A01G489900 chr2A 90.385 52 3 1 408 457 385979930 385979981 3.070000e-07 67.6
27 TraesCS7A01G489900 chr2A 90.244 41 2 2 320 359 28661827 28661866 9.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G489900 chr7A 679817288 679822036 4748 True 8770.000000 8770 100.000 1 4749 1 chr7A.!!$R1 4748
1 TraesCS7A01G489900 chr7B 659651671 659655700 4029 True 1540.666667 3160 88.449 817 4749 3 chr7B.!!$R1 3932
2 TraesCS7A01G489900 chr7B 659938158 659938904 746 True 247.000000 364 81.189 1386 2174 2 chr7B.!!$R2 788
3 TraesCS7A01G489900 chr7D 587849331 587853849 4518 True 1016.400000 1997 85.866 37 4709 5 chr7D.!!$R4 4672
4 TraesCS7A01G489900 chr5B 16394833 16395400 567 True 662.000000 662 87.801 1686 2260 1 chr5B.!!$R1 574
5 TraesCS7A01G489900 chr2B 124151106 124151785 679 False 660.000000 660 84.300 1561 2260 1 chr2B.!!$F1 699

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
544 559 0.104120 TCGGGTCAGAACAGTGTGTG 59.896 55.0 0.0 0.0 0.00 3.82 F
1350 1500 0.036010 AATCTGTCTGTGCGGGGAAG 60.036 55.0 0.0 0.0 0.00 3.46 F
1966 2324 0.535335 TCCGTCATCAGGTTAGCCAC 59.465 55.0 0.0 0.0 37.19 5.01 F
2199 2565 0.669318 CCATGCAAAAGCAGCAGGTG 60.669 55.0 0.0 0.0 46.36 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1354 1504 0.250038 AAGCAAGAAGTCTCGCAGCA 60.250 50.000 0.0 0.0 0.00 4.41 R
3106 3538 1.167851 ACCGATGACATGCCACAAAG 58.832 50.000 0.0 0.0 0.00 2.77 R
3633 4124 2.104792 GGCCTCATACATCAAGCAGGTA 59.895 50.000 0.0 0.0 0.00 3.08 R
4002 4495 1.747355 CATCCCCAAGCAAGTAAGCAG 59.253 52.381 0.0 0.0 36.85 4.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.486472 AGATGGCCTCTGTGTCTTTG 57.514 50.000 3.32 0.00 31.12 2.77
20 21 1.701847 AGATGGCCTCTGTGTCTTTGT 59.298 47.619 3.32 0.00 31.12 2.83
21 22 2.107204 AGATGGCCTCTGTGTCTTTGTT 59.893 45.455 3.32 0.00 31.12 2.83
22 23 1.967319 TGGCCTCTGTGTCTTTGTTC 58.033 50.000 3.32 0.00 0.00 3.18
23 24 1.490490 TGGCCTCTGTGTCTTTGTTCT 59.510 47.619 3.32 0.00 0.00 3.01
24 25 2.092429 TGGCCTCTGTGTCTTTGTTCTT 60.092 45.455 3.32 0.00 0.00 2.52
25 26 2.952310 GGCCTCTGTGTCTTTGTTCTTT 59.048 45.455 0.00 0.00 0.00 2.52
26 27 3.381590 GGCCTCTGTGTCTTTGTTCTTTT 59.618 43.478 0.00 0.00 0.00 2.27
27 28 4.142160 GGCCTCTGTGTCTTTGTTCTTTTT 60.142 41.667 0.00 0.00 0.00 1.94
28 29 4.800471 GCCTCTGTGTCTTTGTTCTTTTTG 59.200 41.667 0.00 0.00 0.00 2.44
29 30 5.622233 GCCTCTGTGTCTTTGTTCTTTTTGT 60.622 40.000 0.00 0.00 0.00 2.83
30 31 6.404293 GCCTCTGTGTCTTTGTTCTTTTTGTA 60.404 38.462 0.00 0.00 0.00 2.41
31 32 7.535139 CCTCTGTGTCTTTGTTCTTTTTGTAA 58.465 34.615 0.00 0.00 0.00 2.41
32 33 8.190784 CCTCTGTGTCTTTGTTCTTTTTGTAAT 58.809 33.333 0.00 0.00 0.00 1.89
44 45 9.239002 TGTTCTTTTTGTAATATCGTGTTTTGG 57.761 29.630 0.00 0.00 0.00 3.28
48 49 6.879276 TTTGTAATATCGTGTTTTGGTGGA 57.121 33.333 0.00 0.00 0.00 4.02
53 54 7.660617 TGTAATATCGTGTTTTGGTGGACTTTA 59.339 33.333 0.00 0.00 0.00 1.85
58 59 5.533154 TCGTGTTTTGGTGGACTTTATTGAT 59.467 36.000 0.00 0.00 0.00 2.57
59 60 6.711194 TCGTGTTTTGGTGGACTTTATTGATA 59.289 34.615 0.00 0.00 0.00 2.15
63 64 6.509418 TTTGGTGGACTTTATTGATAGTGC 57.491 37.500 0.00 0.00 33.83 4.40
68 69 6.292919 GGTGGACTTTATTGATAGTGCGATTC 60.293 42.308 0.00 0.00 35.72 2.52
69 70 6.480320 GTGGACTTTATTGATAGTGCGATTCT 59.520 38.462 0.00 0.00 35.72 2.40
71 72 7.552687 TGGACTTTATTGATAGTGCGATTCTTT 59.447 33.333 0.00 0.00 35.72 2.52
72 73 7.852945 GGACTTTATTGATAGTGCGATTCTTTG 59.147 37.037 0.00 0.00 0.00 2.77
75 76 8.725405 TTTATTGATAGTGCGATTCTTTGGTA 57.275 30.769 0.00 0.00 0.00 3.25
76 77 8.902540 TTATTGATAGTGCGATTCTTTGGTAT 57.097 30.769 0.00 0.00 0.00 2.73
79 80 6.345298 TGATAGTGCGATTCTTTGGTATTCA 58.655 36.000 0.00 0.00 0.00 2.57
80 81 4.946784 AGTGCGATTCTTTGGTATTCAC 57.053 40.909 0.00 0.00 0.00 3.18
104 106 7.768582 CACCAACCAACTCATACTTATATGTGA 59.231 37.037 1.63 0.00 39.48 3.58
106 108 9.173021 CCAACCAACTCATACTTATATGTGAAA 57.827 33.333 1.63 0.00 39.48 2.69
109 111 9.601217 ACCAACTCATACTTATATGTGAAAGTC 57.399 33.333 1.63 0.00 39.48 3.01
116 118 9.317936 CATACTTATATGTGAAAGTCTCTTGCA 57.682 33.333 1.63 0.00 37.19 4.08
120 122 1.942657 TGTGAAAGTCTCTTGCACTGC 59.057 47.619 17.84 0.00 0.00 4.40
121 123 1.942657 GTGAAAGTCTCTTGCACTGCA 59.057 47.619 11.93 0.00 36.47 4.41
122 124 1.942657 TGAAAGTCTCTTGCACTGCAC 59.057 47.619 2.26 0.00 38.71 4.57
123 125 2.216898 GAAAGTCTCTTGCACTGCACT 58.783 47.619 2.26 0.00 38.71 4.40
124 126 1.590932 AAGTCTCTTGCACTGCACTG 58.409 50.000 2.26 0.00 38.71 3.66
125 127 0.250209 AGTCTCTTGCACTGCACTGG 60.250 55.000 2.26 0.00 38.71 4.00
126 128 0.533755 GTCTCTTGCACTGCACTGGT 60.534 55.000 2.26 0.00 38.71 4.00
127 129 0.533531 TCTCTTGCACTGCACTGGTG 60.534 55.000 2.26 0.37 38.71 4.17
128 130 0.533531 CTCTTGCACTGCACTGGTGA 60.534 55.000 2.26 0.00 38.71 4.02
129 131 0.815213 TCTTGCACTGCACTGGTGAC 60.815 55.000 2.26 1.45 38.71 3.67
130 132 1.789078 CTTGCACTGCACTGGTGACC 61.789 60.000 2.26 0.00 38.71 4.02
131 133 3.349006 GCACTGCACTGGTGACCG 61.349 66.667 8.64 0.00 36.89 4.79
132 134 3.349006 CACTGCACTGGTGACCGC 61.349 66.667 4.79 0.00 36.89 5.68
133 135 3.860605 ACTGCACTGGTGACCGCA 61.861 61.111 4.79 2.78 0.00 5.69
148 150 2.078226 CGCAGGTATCGTGTTGGTG 58.922 57.895 0.00 0.00 0.00 4.17
174 176 4.163458 ACGGTGTCATATATTGGTGTTCCT 59.837 41.667 0.00 0.00 34.23 3.36
175 177 5.123227 CGGTGTCATATATTGGTGTTCCTT 58.877 41.667 0.00 0.00 34.23 3.36
178 180 7.480810 GGTGTCATATATTGGTGTTCCTTTTC 58.519 38.462 0.00 0.00 34.23 2.29
190 192 7.488322 TGGTGTTCCTTTTCTTTTTCTATGTG 58.512 34.615 0.00 0.00 34.23 3.21
201 203 1.847328 TTCTATGTGGCGAGAGGACA 58.153 50.000 0.00 0.00 0.00 4.02
204 206 0.752658 TATGTGGCGAGAGGACATGG 59.247 55.000 0.00 0.00 34.91 3.66
207 209 2.764128 GGCGAGAGGACATGGGGA 60.764 66.667 0.00 0.00 0.00 4.81
208 210 2.501610 GCGAGAGGACATGGGGAC 59.498 66.667 0.00 0.00 0.00 4.46
221 223 2.936928 GGGGACCGGTGTGTTTTAG 58.063 57.895 14.63 0.00 40.86 1.85
222 224 0.607217 GGGGACCGGTGTGTTTTAGG 60.607 60.000 14.63 0.00 40.86 2.69
223 225 0.109153 GGGACCGGTGTGTTTTAGGT 59.891 55.000 14.63 0.00 38.00 3.08
224 226 1.477377 GGGACCGGTGTGTTTTAGGTT 60.477 52.381 14.63 0.00 35.00 3.50
225 227 1.605232 GGACCGGTGTGTTTTAGGTTG 59.395 52.381 14.63 0.00 35.00 3.77
226 228 1.605232 GACCGGTGTGTTTTAGGTTGG 59.395 52.381 14.63 0.00 35.00 3.77
228 230 1.605232 CCGGTGTGTTTTAGGTTGGTC 59.395 52.381 0.00 0.00 0.00 4.02
231 233 2.684374 GGTGTGTTTTAGGTTGGTCGTT 59.316 45.455 0.00 0.00 0.00 3.85
232 234 3.487879 GGTGTGTTTTAGGTTGGTCGTTG 60.488 47.826 0.00 0.00 0.00 4.10
233 235 3.127376 GTGTGTTTTAGGTTGGTCGTTGT 59.873 43.478 0.00 0.00 0.00 3.32
234 236 3.127203 TGTGTTTTAGGTTGGTCGTTGTG 59.873 43.478 0.00 0.00 0.00 3.33
235 237 2.683867 TGTTTTAGGTTGGTCGTTGTGG 59.316 45.455 0.00 0.00 0.00 4.17
236 238 2.944349 GTTTTAGGTTGGTCGTTGTGGA 59.056 45.455 0.00 0.00 0.00 4.02
237 239 3.495434 TTTAGGTTGGTCGTTGTGGAT 57.505 42.857 0.00 0.00 0.00 3.41
238 240 3.495434 TTAGGTTGGTCGTTGTGGATT 57.505 42.857 0.00 0.00 0.00 3.01
239 241 4.620589 TTAGGTTGGTCGTTGTGGATTA 57.379 40.909 0.00 0.00 0.00 1.75
240 242 3.495434 AGGTTGGTCGTTGTGGATTAA 57.505 42.857 0.00 0.00 0.00 1.40
241 243 4.028993 AGGTTGGTCGTTGTGGATTAAT 57.971 40.909 0.00 0.00 0.00 1.40
242 244 4.403734 AGGTTGGTCGTTGTGGATTAATT 58.596 39.130 0.00 0.00 0.00 1.40
243 245 4.830600 AGGTTGGTCGTTGTGGATTAATTT 59.169 37.500 0.00 0.00 0.00 1.82
244 246 6.005198 AGGTTGGTCGTTGTGGATTAATTTA 58.995 36.000 0.00 0.00 0.00 1.40
245 247 6.490721 AGGTTGGTCGTTGTGGATTAATTTAA 59.509 34.615 0.00 0.00 0.00 1.52
246 248 6.804783 GGTTGGTCGTTGTGGATTAATTTAAG 59.195 38.462 0.00 0.00 0.00 1.85
247 249 7.308710 GGTTGGTCGTTGTGGATTAATTTAAGA 60.309 37.037 0.00 0.00 0.00 2.10
248 250 7.747155 TGGTCGTTGTGGATTAATTTAAGAA 57.253 32.000 0.00 0.00 0.00 2.52
249 251 8.167605 TGGTCGTTGTGGATTAATTTAAGAAA 57.832 30.769 0.00 0.00 0.00 2.52
250 252 8.798402 TGGTCGTTGTGGATTAATTTAAGAAAT 58.202 29.630 0.00 0.00 0.00 2.17
251 253 9.285770 GGTCGTTGTGGATTAATTTAAGAAATC 57.714 33.333 0.00 0.00 0.00 2.17
252 254 8.995906 GTCGTTGTGGATTAATTTAAGAAATCG 58.004 33.333 0.00 0.00 31.70 3.34
264 266 7.921786 ATTTAAGAAATCGTTGATCCAGTCA 57.078 32.000 0.00 0.00 34.25 3.41
285 287 8.070171 CAGTCAAAATTACGAGTCAAACTCAAT 58.930 33.333 7.78 0.00 45.30 2.57
311 313 8.801882 ATTAAACACCTTAGAATTGATTCCGA 57.198 30.769 0.27 0.00 37.51 4.55
315 317 7.145932 ACACCTTAGAATTGATTCCGAAAAG 57.854 36.000 0.27 1.15 37.51 2.27
325 327 0.179040 TTCCGAAAAGCCGTTGACCT 60.179 50.000 0.00 0.00 0.00 3.85
326 328 0.680618 TCCGAAAAGCCGTTGACCTA 59.319 50.000 0.00 0.00 0.00 3.08
330 332 2.157085 CGAAAAGCCGTTGACCTAGTTC 59.843 50.000 0.00 0.00 0.00 3.01
331 333 2.922740 AAAGCCGTTGACCTAGTTCA 57.077 45.000 0.00 0.00 0.00 3.18
337 339 3.689649 GCCGTTGACCTAGTTCAAATCAT 59.310 43.478 4.05 0.00 37.24 2.45
338 340 4.437390 GCCGTTGACCTAGTTCAAATCATG 60.437 45.833 4.05 0.00 37.24 3.07
359 361 8.016497 TCATGAAGCAAATCCAAAATTAAACG 57.984 30.769 0.00 0.00 0.00 3.60
362 364 3.677596 AGCAAATCCAAAATTAAACGCCG 59.322 39.130 0.00 0.00 0.00 6.46
363 365 3.430556 GCAAATCCAAAATTAAACGCCGT 59.569 39.130 0.00 0.00 0.00 5.68
364 366 4.084276 GCAAATCCAAAATTAAACGCCGTT 60.084 37.500 0.00 0.00 0.00 4.44
365 367 5.370000 CAAATCCAAAATTAAACGCCGTTG 58.630 37.500 1.95 0.00 0.00 4.10
366 368 3.984508 TCCAAAATTAAACGCCGTTGA 57.015 38.095 1.95 0.00 0.00 3.18
367 369 3.630101 TCCAAAATTAAACGCCGTTGAC 58.370 40.909 1.95 0.00 0.00 3.18
368 370 2.727278 CCAAAATTAAACGCCGTTGACC 59.273 45.455 1.95 0.00 0.00 4.02
369 371 2.710220 AAATTAAACGCCGTTGACCC 57.290 45.000 1.95 0.00 0.00 4.46
371 373 1.161843 ATTAAACGCCGTTGACCCAG 58.838 50.000 1.95 0.00 0.00 4.45
373 375 0.179051 TAAACGCCGTTGACCCAGTT 60.179 50.000 1.95 0.00 0.00 3.16
374 376 1.441732 AAACGCCGTTGACCCAGTTC 61.442 55.000 1.95 0.00 0.00 3.01
376 378 1.890041 CGCCGTTGACCCAGTTCAA 60.890 57.895 0.00 0.00 32.94 2.69
378 380 0.958822 GCCGTTGACCCAGTTCAAAT 59.041 50.000 0.00 0.00 37.24 2.32
379 381 1.068541 GCCGTTGACCCAGTTCAAATC 60.069 52.381 0.00 0.00 37.24 2.17
381 383 2.819608 CCGTTGACCCAGTTCAAATCAT 59.180 45.455 0.00 0.00 37.24 2.45
382 384 3.366273 CCGTTGACCCAGTTCAAATCATG 60.366 47.826 0.00 0.00 37.24 3.07
383 385 3.501828 CGTTGACCCAGTTCAAATCATGA 59.498 43.478 0.00 0.00 37.24 3.07
384 386 4.023279 CGTTGACCCAGTTCAAATCATGAA 60.023 41.667 0.00 0.00 45.71 2.57
398 413 7.787084 TCAAATCATGAAGCGTATTTAGATCG 58.213 34.615 0.00 0.00 34.30 3.69
399 414 7.651704 TCAAATCATGAAGCGTATTTAGATCGA 59.348 33.333 0.00 0.00 34.30 3.59
400 415 7.946655 AATCATGAAGCGTATTTAGATCGAA 57.053 32.000 0.00 0.00 0.00 3.71
401 416 7.946655 ATCATGAAGCGTATTTAGATCGAAA 57.053 32.000 0.00 3.34 0.00 3.46
402 417 7.764695 TCATGAAGCGTATTTAGATCGAAAA 57.235 32.000 5.05 2.17 0.00 2.29
403 418 7.618442 TCATGAAGCGTATTTAGATCGAAAAC 58.382 34.615 5.05 4.80 0.00 2.43
404 419 6.340537 TGAAGCGTATTTAGATCGAAAACC 57.659 37.500 5.05 0.00 0.00 3.27
405 420 5.292589 TGAAGCGTATTTAGATCGAAAACCC 59.707 40.000 5.05 0.00 0.00 4.11
406 421 4.761975 AGCGTATTTAGATCGAAAACCCA 58.238 39.130 5.05 0.00 0.00 4.51
407 422 5.180271 AGCGTATTTAGATCGAAAACCCAA 58.820 37.500 5.05 0.00 0.00 4.12
408 423 5.820947 AGCGTATTTAGATCGAAAACCCAAT 59.179 36.000 5.05 0.00 0.00 3.16
409 424 6.317893 AGCGTATTTAGATCGAAAACCCAATT 59.682 34.615 5.05 0.00 0.00 2.32
410 425 6.631636 GCGTATTTAGATCGAAAACCCAATTC 59.368 38.462 5.05 0.00 0.00 2.17
411 426 7.677747 GCGTATTTAGATCGAAAACCCAATTCA 60.678 37.037 5.05 0.00 0.00 2.57
412 427 7.850982 CGTATTTAGATCGAAAACCCAATTCAG 59.149 37.037 5.05 0.00 0.00 3.02
413 428 7.703058 ATTTAGATCGAAAACCCAATTCAGT 57.297 32.000 5.05 0.00 0.00 3.41
414 429 6.494893 TTAGATCGAAAACCCAATTCAGTG 57.505 37.500 0.00 0.00 0.00 3.66
415 430 3.191371 AGATCGAAAACCCAATTCAGTGC 59.809 43.478 0.00 0.00 0.00 4.40
416 431 1.611491 TCGAAAACCCAATTCAGTGCC 59.389 47.619 0.00 0.00 0.00 5.01
417 432 1.336795 CGAAAACCCAATTCAGTGCCC 60.337 52.381 0.00 0.00 0.00 5.36
418 433 1.691434 GAAAACCCAATTCAGTGCCCA 59.309 47.619 0.00 0.00 0.00 5.36
419 434 1.341080 AAACCCAATTCAGTGCCCAG 58.659 50.000 0.00 0.00 0.00 4.45
420 435 0.542702 AACCCAATTCAGTGCCCAGG 60.543 55.000 0.00 0.00 0.00 4.45
421 436 2.353610 CCCAATTCAGTGCCCAGGC 61.354 63.158 0.38 0.38 42.35 4.85
422 437 1.304713 CCAATTCAGTGCCCAGGCT 60.305 57.895 10.58 0.00 42.51 4.58
423 438 1.318158 CCAATTCAGTGCCCAGGCTC 61.318 60.000 10.58 6.42 42.51 4.70
424 439 0.609957 CAATTCAGTGCCCAGGCTCA 60.610 55.000 10.58 0.00 42.51 4.26
425 440 0.333993 AATTCAGTGCCCAGGCTCAT 59.666 50.000 10.58 0.00 42.51 2.90
426 441 0.106819 ATTCAGTGCCCAGGCTCATC 60.107 55.000 10.58 0.00 42.51 2.92
427 442 1.203441 TTCAGTGCCCAGGCTCATCT 61.203 55.000 10.58 0.81 42.51 2.90
428 443 1.451567 CAGTGCCCAGGCTCATCTG 60.452 63.158 10.58 9.24 42.51 2.90
429 444 2.827642 GTGCCCAGGCTCATCTGC 60.828 66.667 10.58 0.00 42.51 4.26
430 445 3.332385 TGCCCAGGCTCATCTGCA 61.332 61.111 10.58 0.00 42.51 4.41
431 446 2.827642 GCCCAGGCTCATCTGCAC 60.828 66.667 0.08 0.00 38.26 4.57
432 447 2.124403 CCCAGGCTCATCTGCACC 60.124 66.667 0.00 0.00 33.64 5.01
433 448 2.124403 CCAGGCTCATCTGCACCC 60.124 66.667 0.00 0.00 33.64 4.61
434 449 2.513204 CAGGCTCATCTGCACCCG 60.513 66.667 0.00 0.00 34.04 5.28
435 450 3.005539 AGGCTCATCTGCACCCGT 61.006 61.111 0.00 0.00 34.04 5.28
436 451 2.045926 GGCTCATCTGCACCCGTT 60.046 61.111 0.00 0.00 34.04 4.44
437 452 2.109126 GGCTCATCTGCACCCGTTC 61.109 63.158 0.00 0.00 34.04 3.95
438 453 1.375908 GCTCATCTGCACCCGTTCA 60.376 57.895 0.00 0.00 0.00 3.18
439 454 0.955428 GCTCATCTGCACCCGTTCAA 60.955 55.000 0.00 0.00 0.00 2.69
440 455 1.522668 CTCATCTGCACCCGTTCAAA 58.477 50.000 0.00 0.00 0.00 2.69
441 456 1.879380 CTCATCTGCACCCGTTCAAAA 59.121 47.619 0.00 0.00 0.00 2.44
442 457 2.293122 CTCATCTGCACCCGTTCAAAAA 59.707 45.455 0.00 0.00 0.00 1.94
471 486 2.399396 AAAATTGTGCGTGAGGTTCG 57.601 45.000 0.00 0.00 0.00 3.95
480 495 2.969443 CGTGAGGTTCGCTTCAAATT 57.031 45.000 0.00 0.00 34.92 1.82
481 496 3.268013 CGTGAGGTTCGCTTCAAATTT 57.732 42.857 0.00 0.00 34.92 1.82
482 497 3.226347 CGTGAGGTTCGCTTCAAATTTC 58.774 45.455 0.00 0.00 34.92 2.17
483 498 3.303725 CGTGAGGTTCGCTTCAAATTTCA 60.304 43.478 0.00 0.00 34.92 2.69
484 499 4.606961 GTGAGGTTCGCTTCAAATTTCAA 58.393 39.130 0.00 0.00 34.92 2.69
485 500 4.441087 GTGAGGTTCGCTTCAAATTTCAAC 59.559 41.667 0.00 0.00 34.92 3.18
486 501 4.338118 TGAGGTTCGCTTCAAATTTCAACT 59.662 37.500 0.00 0.00 29.85 3.16
487 502 5.163561 TGAGGTTCGCTTCAAATTTCAACTT 60.164 36.000 0.00 0.00 29.85 2.66
488 503 6.038825 TGAGGTTCGCTTCAAATTTCAACTTA 59.961 34.615 0.00 0.00 29.85 2.24
489 504 6.981722 AGGTTCGCTTCAAATTTCAACTTAT 58.018 32.000 0.00 0.00 0.00 1.73
490 505 7.433680 AGGTTCGCTTCAAATTTCAACTTATT 58.566 30.769 0.00 0.00 0.00 1.40
491 506 7.926018 AGGTTCGCTTCAAATTTCAACTTATTT 59.074 29.630 0.00 0.00 0.00 1.40
492 507 9.187455 GGTTCGCTTCAAATTTCAACTTATTTA 57.813 29.630 0.00 0.00 0.00 1.40
495 510 9.607285 TCGCTTCAAATTTCAACTTATTTAGAC 57.393 29.630 0.00 0.00 0.00 2.59
496 511 8.567221 CGCTTCAAATTTCAACTTATTTAGACG 58.433 33.333 0.00 0.00 0.00 4.18
497 512 9.394477 GCTTCAAATTTCAACTTATTTAGACGT 57.606 29.630 0.00 0.00 0.00 4.34
506 521 8.236084 TCAACTTATTTAGACGTTTGAGTAGC 57.764 34.615 0.00 0.00 0.00 3.58
507 522 8.086522 TCAACTTATTTAGACGTTTGAGTAGCT 58.913 33.333 0.00 0.00 0.00 3.32
508 523 8.373992 CAACTTATTTAGACGTTTGAGTAGCTC 58.626 37.037 0.00 0.00 0.00 4.09
509 524 7.828712 ACTTATTTAGACGTTTGAGTAGCTCT 58.171 34.615 0.00 0.00 0.00 4.09
510 525 7.969508 ACTTATTTAGACGTTTGAGTAGCTCTC 59.030 37.037 0.00 0.00 43.03 3.20
520 535 4.607293 TGAGTAGCTCTCAGCAAAAGAA 57.393 40.909 10.62 0.00 46.77 2.52
521 536 4.960938 TGAGTAGCTCTCAGCAAAAGAAA 58.039 39.130 10.62 0.00 46.77 2.52
522 537 5.368145 TGAGTAGCTCTCAGCAAAAGAAAA 58.632 37.500 10.62 0.00 46.77 2.29
523 538 5.822519 TGAGTAGCTCTCAGCAAAAGAAAAA 59.177 36.000 10.62 0.00 46.77 1.94
541 556 2.930826 AAATCGGGTCAGAACAGTGT 57.069 45.000 0.00 0.00 0.00 3.55
542 557 2.169832 AATCGGGTCAGAACAGTGTG 57.830 50.000 0.00 0.00 0.00 3.82
543 558 1.048601 ATCGGGTCAGAACAGTGTGT 58.951 50.000 0.00 0.00 0.00 3.72
544 559 0.104120 TCGGGTCAGAACAGTGTGTG 59.896 55.000 0.00 0.00 0.00 3.82
545 560 0.104120 CGGGTCAGAACAGTGTGTGA 59.896 55.000 0.00 0.00 0.00 3.58
546 561 1.472552 CGGGTCAGAACAGTGTGTGAA 60.473 52.381 9.58 0.00 0.00 3.18
547 562 1.940613 GGGTCAGAACAGTGTGTGAAC 59.059 52.381 13.33 13.33 0.00 3.18
548 563 2.627945 GGTCAGAACAGTGTGTGAACA 58.372 47.619 15.81 0.00 0.00 3.18
549 564 2.609459 GGTCAGAACAGTGTGTGAACAG 59.391 50.000 15.81 0.00 0.00 3.16
550 565 3.262420 GTCAGAACAGTGTGTGAACAGT 58.738 45.455 9.58 0.00 0.00 3.55
551 566 4.430007 GTCAGAACAGTGTGTGAACAGTA 58.570 43.478 9.58 0.00 0.00 2.74
552 567 4.868171 GTCAGAACAGTGTGTGAACAGTAA 59.132 41.667 9.58 0.00 0.00 2.24
553 568 5.350365 GTCAGAACAGTGTGTGAACAGTAAA 59.650 40.000 9.58 0.00 0.00 2.01
554 569 5.350365 TCAGAACAGTGTGTGAACAGTAAAC 59.650 40.000 0.00 0.00 0.00 2.01
555 570 5.351465 CAGAACAGTGTGTGAACAGTAAACT 59.649 40.000 0.00 0.00 0.00 2.66
556 571 5.938125 AGAACAGTGTGTGAACAGTAAACTT 59.062 36.000 0.00 0.00 0.00 2.66
557 572 6.430000 AGAACAGTGTGTGAACAGTAAACTTT 59.570 34.615 0.00 0.00 0.00 2.66
558 573 6.569179 ACAGTGTGTGAACAGTAAACTTTT 57.431 33.333 0.00 0.00 0.00 2.27
559 574 6.977213 ACAGTGTGTGAACAGTAAACTTTTT 58.023 32.000 0.00 0.00 0.00 1.94
611 626 5.560722 TGGGAGTTACTCAGATGTTCAAA 57.439 39.130 14.72 0.00 31.08 2.69
612 627 6.126863 TGGGAGTTACTCAGATGTTCAAAT 57.873 37.500 14.72 0.00 31.08 2.32
613 628 5.939883 TGGGAGTTACTCAGATGTTCAAATG 59.060 40.000 14.72 0.00 31.08 2.32
614 629 6.173339 GGGAGTTACTCAGATGTTCAAATGA 58.827 40.000 14.72 0.00 31.08 2.57
615 630 6.314896 GGGAGTTACTCAGATGTTCAAATGAG 59.685 42.308 14.72 12.73 43.81 2.90
629 644 5.186996 TCAAATGAGTTGAAACTTGGAGC 57.813 39.130 0.00 0.00 43.43 4.70
630 645 3.904136 AATGAGTTGAAACTTGGAGCG 57.096 42.857 0.00 0.00 39.88 5.03
631 646 2.325583 TGAGTTGAAACTTGGAGCGT 57.674 45.000 0.00 0.00 39.88 5.07
632 647 3.462483 TGAGTTGAAACTTGGAGCGTA 57.538 42.857 0.00 0.00 39.88 4.42
633 648 3.128349 TGAGTTGAAACTTGGAGCGTAC 58.872 45.455 0.00 0.00 39.88 3.67
634 649 2.479275 GAGTTGAAACTTGGAGCGTACC 59.521 50.000 0.00 0.00 39.88 3.34
635 650 2.104281 AGTTGAAACTTGGAGCGTACCT 59.896 45.455 0.00 0.00 35.21 3.08
636 651 2.450609 TGAAACTTGGAGCGTACCTC 57.549 50.000 3.50 3.50 39.98 3.85
637 652 1.689813 TGAAACTTGGAGCGTACCTCA 59.310 47.619 11.82 0.00 42.62 3.86
638 653 2.301870 TGAAACTTGGAGCGTACCTCAT 59.698 45.455 11.82 0.00 42.62 2.90
639 654 2.386661 AACTTGGAGCGTACCTCATG 57.613 50.000 11.82 0.00 42.62 3.07
640 655 0.108138 ACTTGGAGCGTACCTCATGC 60.108 55.000 11.82 0.00 42.62 4.06
641 656 0.108186 CTTGGAGCGTACCTCATGCA 60.108 55.000 11.82 0.00 42.62 3.96
642 657 0.541392 TTGGAGCGTACCTCATGCAT 59.459 50.000 11.82 0.00 42.62 3.96
643 658 1.408969 TGGAGCGTACCTCATGCATA 58.591 50.000 0.00 0.00 42.62 3.14
644 659 1.760029 TGGAGCGTACCTCATGCATAA 59.240 47.619 0.00 0.00 42.62 1.90
645 660 2.169561 TGGAGCGTACCTCATGCATAAA 59.830 45.455 0.00 0.00 42.62 1.40
646 661 2.544267 GGAGCGTACCTCATGCATAAAC 59.456 50.000 0.00 0.00 42.62 2.01
647 662 3.458189 GAGCGTACCTCATGCATAAACT 58.542 45.455 0.00 0.00 42.04 2.66
648 663 3.871594 GAGCGTACCTCATGCATAAACTT 59.128 43.478 0.00 0.00 42.04 2.66
649 664 5.018539 AGCGTACCTCATGCATAAACTTA 57.981 39.130 0.00 0.00 42.04 2.24
650 665 5.611374 AGCGTACCTCATGCATAAACTTAT 58.389 37.500 0.00 0.00 42.04 1.73
651 666 5.696724 AGCGTACCTCATGCATAAACTTATC 59.303 40.000 0.00 0.00 42.04 1.75
652 667 5.696724 GCGTACCTCATGCATAAACTTATCT 59.303 40.000 0.00 0.00 39.15 1.98
653 668 6.866770 GCGTACCTCATGCATAAACTTATCTA 59.133 38.462 0.00 0.00 39.15 1.98
654 669 7.148787 GCGTACCTCATGCATAAACTTATCTAC 60.149 40.741 0.00 0.00 39.15 2.59
655 670 7.328737 CGTACCTCATGCATAAACTTATCTACC 59.671 40.741 0.00 0.00 0.00 3.18
656 671 7.136822 ACCTCATGCATAAACTTATCTACCA 57.863 36.000 0.00 0.00 0.00 3.25
657 672 6.992715 ACCTCATGCATAAACTTATCTACCAC 59.007 38.462 0.00 0.00 0.00 4.16
658 673 6.992123 CCTCATGCATAAACTTATCTACCACA 59.008 38.462 0.00 0.00 0.00 4.17
659 674 7.041780 CCTCATGCATAAACTTATCTACCACAC 60.042 40.741 0.00 0.00 0.00 3.82
660 675 7.334858 TCATGCATAAACTTATCTACCACACA 58.665 34.615 0.00 0.00 0.00 3.72
661 676 6.978343 TGCATAAACTTATCTACCACACAC 57.022 37.500 0.00 0.00 0.00 3.82
662 677 6.468543 TGCATAAACTTATCTACCACACACA 58.531 36.000 0.00 0.00 0.00 3.72
663 678 6.937465 TGCATAAACTTATCTACCACACACAA 59.063 34.615 0.00 0.00 0.00 3.33
664 679 7.445707 TGCATAAACTTATCTACCACACACAAA 59.554 33.333 0.00 0.00 0.00 2.83
665 680 8.293867 GCATAAACTTATCTACCACACACAAAA 58.706 33.333 0.00 0.00 0.00 2.44
714 729 2.673775 TTTTTCATCAGGAGGGTGCA 57.326 45.000 0.00 0.00 0.00 4.57
719 734 2.323599 TCATCAGGAGGGTGCAGATAG 58.676 52.381 0.00 0.00 0.00 2.08
730 745 3.389329 GGGTGCAGATAGATCCTTCTTCA 59.611 47.826 0.00 0.00 33.17 3.02
745 769 9.803315 GATCCTTCTTCATTGCACGTATATATA 57.197 33.333 0.00 0.00 0.00 0.86
747 771 9.990360 TCCTTCTTCATTGCACGTATATATAAA 57.010 29.630 0.00 0.00 0.00 1.40
872 933 0.519792 CGTCACATGATGCAACGCAG 60.520 55.000 0.00 0.00 43.65 5.18
881 942 4.662961 GCAACGCAGCCCAAACCC 62.663 66.667 0.00 0.00 0.00 4.11
884 945 2.060980 AACGCAGCCCAAACCCAAA 61.061 52.632 0.00 0.00 0.00 3.28
889 961 1.053835 CAGCCCAAACCCAAACCCTT 61.054 55.000 0.00 0.00 0.00 3.95
974 1046 1.809684 GGCAGATAAATACCTCGGCC 58.190 55.000 0.00 0.00 43.68 6.13
995 1067 1.578206 GAGCGAACCAAACCCAGAGC 61.578 60.000 0.00 0.00 0.00 4.09
1017 1089 4.426313 CCCGAACCCAAGCCCTCC 62.426 72.222 0.00 0.00 0.00 4.30
1018 1090 3.330720 CCGAACCCAAGCCCTCCT 61.331 66.667 0.00 0.00 0.00 3.69
1146 1243 1.294659 CGCTCAGGTGAGTTCTTGGC 61.295 60.000 8.74 0.00 43.85 4.52
1160 1257 0.767998 CTTGGCCCTTATCCTCCTCC 59.232 60.000 0.00 0.00 0.00 4.30
1191 1288 3.256136 TCTCCTTCTTGGTTTCGTCTCTC 59.744 47.826 0.00 0.00 37.07 3.20
1225 1322 1.298859 CGGGTTCTTTGGAGGAAGCG 61.299 60.000 0.00 0.00 40.68 4.68
1232 1329 2.303022 TCTTTGGAGGAAGCGAGATTGT 59.697 45.455 0.00 0.00 0.00 2.71
1312 1461 2.651361 CGTAGGGATGGCGGCTAG 59.349 66.667 11.43 0.00 0.00 3.42
1313 1462 2.932234 CGTAGGGATGGCGGCTAGG 61.932 68.421 11.43 0.00 0.00 3.02
1314 1463 2.923035 TAGGGATGGCGGCTAGGC 60.923 66.667 11.43 6.15 46.95 3.93
1322 1471 3.347411 GGCGGCTAGGCGATAATAG 57.653 57.895 39.13 11.64 35.04 1.73
1350 1500 0.036010 AATCTGTCTGTGCGGGGAAG 60.036 55.000 0.00 0.00 0.00 3.46
1354 1504 1.228154 GTCTGTGCGGGGAAGGTTT 60.228 57.895 0.00 0.00 0.00 3.27
1364 1514 1.578206 GGGAAGGTTTGCTGCGAGAC 61.578 60.000 0.00 0.00 0.00 3.36
1381 1582 4.302455 CGAGACTTCTTGCTTTCTGAAGA 58.698 43.478 8.65 0.00 39.42 2.87
1417 1618 4.270084 TGCGTATCAGTCGATGAAAATTCC 59.730 41.667 0.00 0.00 42.53 3.01
1427 1628 4.700213 TCGATGAAAATTCCCAGTCTTTCC 59.300 41.667 0.00 0.00 0.00 3.13
1454 1656 6.141211 GGAAAAAGACGGTTGAATTTTACGAC 59.859 38.462 0.00 0.00 0.00 4.34
1460 1665 4.210537 ACGGTTGAATTTTACGACTCTGTG 59.789 41.667 0.00 0.00 0.00 3.66
1527 1738 7.475015 TCAACAAGAAAAGTCTGAGATTGTTG 58.525 34.615 21.87 21.87 43.14 3.33
1534 1745 1.198637 GTCTGAGATTGTTGTGCTGGC 59.801 52.381 0.00 0.00 0.00 4.85
1592 1803 2.224305 ACTGAGGCAGAACCAGTTGTAC 60.224 50.000 0.82 0.00 43.14 2.90
1603 1814 5.701290 AGAACCAGTTGTACTTATGCAGAAC 59.299 40.000 0.00 0.00 0.00 3.01
1692 2037 3.681897 ACTGAATCAGAACTCGATTGTGC 59.318 43.478 18.20 0.00 33.26 4.57
1750 2102 5.404946 TCTAGTGGCGTGTAAAATGAGTAC 58.595 41.667 0.00 0.00 0.00 2.73
1751 2103 4.267349 AGTGGCGTGTAAAATGAGTACT 57.733 40.909 0.00 0.00 0.00 2.73
1752 2104 5.395682 AGTGGCGTGTAAAATGAGTACTA 57.604 39.130 0.00 0.00 0.00 1.82
1804 2156 1.269361 TGCAAGCATGAAACTGTGCAG 60.269 47.619 0.00 0.00 43.63 4.41
1920 2278 2.827921 CCTTCCTTTTTCTGACATGGGG 59.172 50.000 0.00 0.00 0.00 4.96
1950 2308 2.159379 TCTGATGAGTGTCGTGAATCCG 60.159 50.000 0.00 0.00 0.00 4.18
1966 2324 0.535335 TCCGTCATCAGGTTAGCCAC 59.465 55.000 0.00 0.00 37.19 5.01
1978 2336 2.312390 GTTAGCCACCAAAGGTTTCCA 58.688 47.619 0.00 0.00 31.02 3.53
2025 2385 2.286294 GCAAACTGTGACTGACTGACTG 59.714 50.000 0.00 0.00 0.00 3.51
2031 2391 3.261580 TGTGACTGACTGACTGTTTGTG 58.738 45.455 0.00 0.00 0.00 3.33
2077 2437 3.124921 GAACGCCGTGGTGATGGG 61.125 66.667 6.43 0.00 0.00 4.00
2163 2529 1.004044 CACAGAAAGCAGGGATGGAGT 59.996 52.381 0.00 0.00 0.00 3.85
2199 2565 0.669318 CCATGCAAAAGCAGCAGGTG 60.669 55.000 0.00 0.00 46.36 4.00
2425 2841 4.383850 ACACACTCTGCTCTGATATGAC 57.616 45.455 0.00 0.00 0.00 3.06
2426 2842 3.766051 ACACACTCTGCTCTGATATGACA 59.234 43.478 0.00 0.00 0.00 3.58
2468 2884 6.424812 GGCTTTTAAACATCTGCAAAGTTGAT 59.575 34.615 0.00 0.00 0.00 2.57
2469 2885 7.359514 GGCTTTTAAACATCTGCAAAGTTGATC 60.360 37.037 0.00 0.00 0.00 2.92
2470 2886 7.169645 GCTTTTAAACATCTGCAAAGTTGATCA 59.830 33.333 0.00 0.00 0.00 2.92
2471 2887 8.578308 TTTTAAACATCTGCAAAGTTGATCAG 57.422 30.769 0.00 0.00 0.00 2.90
2472 2888 7.509141 TTAAACATCTGCAAAGTTGATCAGA 57.491 32.000 0.00 0.00 39.54 3.27
2473 2889 6.585695 AAACATCTGCAAAGTTGATCAGAT 57.414 33.333 0.00 7.81 44.44 2.90
2624 3045 7.509546 CAAGGTTAGTCTCTATCTCTCTCTCT 58.490 42.308 0.00 0.00 0.00 3.10
2625 3046 7.304497 AGGTTAGTCTCTATCTCTCTCTCTC 57.696 44.000 0.00 0.00 0.00 3.20
2626 3047 6.270231 AGGTTAGTCTCTATCTCTCTCTCTCC 59.730 46.154 0.00 0.00 0.00 3.71
2627 3048 6.270231 GGTTAGTCTCTATCTCTCTCTCTCCT 59.730 46.154 0.00 0.00 0.00 3.69
2683 3114 7.572523 TCCAGTCATAGGCTATTTCATTTTG 57.427 36.000 3.76 0.00 0.00 2.44
2763 3195 4.332543 CACAGCTAAACAAACAGTCTGACA 59.667 41.667 10.88 0.00 0.00 3.58
2767 3199 6.974622 CAGCTAAACAAACAGTCTGACATTTT 59.025 34.615 10.88 5.77 0.00 1.82
2982 3414 1.891011 GCTACAACAAAAGGGGAGGGG 60.891 57.143 0.00 0.00 0.00 4.79
3185 3617 1.000717 GCGAGGCTAGTTTTGGCAAAA 60.001 47.619 20.81 20.81 31.41 2.44
3317 3749 5.739959 TGTGTTATTGGCTGTTATGAGCTA 58.260 37.500 0.00 0.00 39.11 3.32
3318 3750 5.584649 TGTGTTATTGGCTGTTATGAGCTAC 59.415 40.000 0.00 0.00 39.11 3.58
3335 3767 5.921976 TGAGCTACTTTTTCGTCACGATAAA 59.078 36.000 14.04 14.04 35.31 1.40
3336 3768 6.129009 TGAGCTACTTTTTCGTCACGATAAAC 60.129 38.462 11.23 3.20 33.51 2.01
3337 3769 5.119743 AGCTACTTTTTCGTCACGATAAACC 59.880 40.000 11.23 2.25 33.51 3.27
3338 3770 5.107375 GCTACTTTTTCGTCACGATAAACCA 60.107 40.000 11.23 2.67 33.51 3.67
3340 3772 5.923665 ACTTTTTCGTCACGATAAACCATC 58.076 37.500 11.23 0.00 33.51 3.51
3341 3773 5.467399 ACTTTTTCGTCACGATAAACCATCA 59.533 36.000 11.23 0.00 33.51 3.07
3342 3774 5.524511 TTTTCGTCACGATAAACCATCAG 57.475 39.130 0.00 0.00 35.23 2.90
3343 3775 2.536365 TCGTCACGATAAACCATCAGC 58.464 47.619 0.00 0.00 32.71 4.26
3344 3776 2.094442 TCGTCACGATAAACCATCAGCA 60.094 45.455 0.00 0.00 32.71 4.41
3345 3777 2.866156 CGTCACGATAAACCATCAGCAT 59.134 45.455 0.00 0.00 32.71 3.79
3346 3778 4.048504 CGTCACGATAAACCATCAGCATA 58.951 43.478 0.00 0.00 32.71 3.14
3347 3779 4.686091 CGTCACGATAAACCATCAGCATAT 59.314 41.667 0.00 0.00 32.71 1.78
3348 3780 5.164051 CGTCACGATAAACCATCAGCATATC 60.164 44.000 0.00 0.00 32.71 1.63
3349 3781 5.928839 GTCACGATAAACCATCAGCATATCT 59.071 40.000 0.00 0.00 32.71 1.98
3350 3782 6.425114 GTCACGATAAACCATCAGCATATCTT 59.575 38.462 0.00 0.00 32.71 2.40
3385 3817 4.099113 TCAGTACAGCAAGATCAGGATCAG 59.901 45.833 11.55 5.02 40.22 2.90
3539 4030 6.821160 CCATGGTAATCAACACATACACTGTA 59.179 38.462 2.57 0.00 35.91 2.74
3630 4121 3.164268 CCCACCATCAAATTTCAGTGGA 58.836 45.455 19.64 3.12 46.15 4.02
3687 4178 2.494059 CTCCTTTCCTTTGCGAGTGAA 58.506 47.619 0.00 0.00 0.00 3.18
3793 4284 7.276658 GTCAGGTTGTTGAAGATATGAGTAGTG 59.723 40.741 0.00 0.00 0.00 2.74
3825 4317 6.174049 CCATGCTCTGACATCATCATCTTAT 58.826 40.000 0.00 0.00 36.48 1.73
3828 4320 5.071384 TGCTCTGACATCATCATCTTATGGT 59.929 40.000 0.00 0.00 36.48 3.55
3829 4321 5.996513 GCTCTGACATCATCATCTTATGGTT 59.003 40.000 0.00 0.00 36.48 3.67
3830 4322 7.157347 GCTCTGACATCATCATCTTATGGTTA 58.843 38.462 0.00 0.00 36.48 2.85
3831 4323 7.823310 GCTCTGACATCATCATCTTATGGTTAT 59.177 37.037 0.00 0.00 36.48 1.89
3832 4324 9.152595 CTCTGACATCATCATCTTATGGTTATG 57.847 37.037 0.00 0.00 36.48 1.90
3833 4325 8.098912 TCTGACATCATCATCTTATGGTTATGG 58.901 37.037 0.83 0.00 36.48 2.74
4002 4495 9.982651 TCAGATATTAGTGGTATTTAGTCTTGC 57.017 33.333 0.00 0.00 0.00 4.01
4064 4557 2.225091 TGGATCATTGCCAACTCCTGTT 60.225 45.455 0.00 0.00 36.75 3.16
4095 4609 5.749588 TCAGCAAAATTCAGTTGAATGTGTG 59.250 36.000 8.04 7.82 43.41 3.82
4186 4727 4.411869 TGACCTGCTCCATATGTCCAATTA 59.588 41.667 1.24 0.00 0.00 1.40
4195 4736 8.806146 GCTCCATATGTCCAATTACCATAATTT 58.194 33.333 1.24 0.00 0.00 1.82
4201 4742 7.473735 TGTCCAATTACCATAATTTGAAGCA 57.526 32.000 0.00 0.00 0.00 3.91
4347 4888 5.240121 CAAAAAGATGGCCTGCATTAAACT 58.760 37.500 3.32 0.00 0.00 2.66
4420 4964 1.604604 CACGGTTGGACATGAAACCT 58.395 50.000 19.94 9.94 43.11 3.50
4577 5127 5.711976 ACCATCTTTCCAAGATTCGAACAAT 59.288 36.000 0.00 0.00 45.75 2.71
4626 5176 1.207329 CTTTTCTCGGACCCCCTACAG 59.793 57.143 0.00 0.00 0.00 2.74
4650 5200 6.154021 AGCATTCACAAAAGGATTATGCTCTT 59.846 34.615 0.00 0.00 42.38 2.85
4670 5220 1.452145 TTGCTGGCCGTGACCTTTTC 61.452 55.000 0.00 0.00 0.00 2.29
4712 5262 6.141685 GCGCATTATTTTCGTAATAAACTGGG 59.858 38.462 0.30 11.18 0.00 4.45
4713 5263 7.411274 CGCATTATTTTCGTAATAAACTGGGA 58.589 34.615 8.69 0.00 0.00 4.37
4723 5273 6.657541 TCGTAATAAACTGGGAAAGCAAGAAT 59.342 34.615 0.00 0.00 0.00 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.701847 ACAAAGACACAGAGGCCATCT 59.298 47.619 5.01 1.58 39.56 2.90
1 2 2.191128 ACAAAGACACAGAGGCCATC 57.809 50.000 5.01 0.00 0.00 3.51
3 4 1.490490 AGAACAAAGACACAGAGGCCA 59.510 47.619 5.01 0.00 0.00 5.36
4 5 2.262423 AGAACAAAGACACAGAGGCC 57.738 50.000 0.00 0.00 0.00 5.19
5 6 4.639135 AAAAGAACAAAGACACAGAGGC 57.361 40.909 0.00 0.00 0.00 4.70
6 7 5.954335 ACAAAAAGAACAAAGACACAGAGG 58.046 37.500 0.00 0.00 0.00 3.69
10 11 9.658475 CGATATTACAAAAAGAACAAAGACACA 57.342 29.630 0.00 0.00 0.00 3.72
11 12 9.659830 ACGATATTACAAAAAGAACAAAGACAC 57.340 29.630 0.00 0.00 0.00 3.67
12 13 9.658475 CACGATATTACAAAAAGAACAAAGACA 57.342 29.630 0.00 0.00 0.00 3.41
13 14 9.659830 ACACGATATTACAAAAAGAACAAAGAC 57.340 29.630 0.00 0.00 0.00 3.01
18 19 9.239002 CCAAAACACGATATTACAAAAAGAACA 57.761 29.630 0.00 0.00 0.00 3.18
19 20 9.240159 ACCAAAACACGATATTACAAAAAGAAC 57.760 29.630 0.00 0.00 0.00 3.01
20 21 9.239002 CACCAAAACACGATATTACAAAAAGAA 57.761 29.630 0.00 0.00 0.00 2.52
21 22 7.863375 CCACCAAAACACGATATTACAAAAAGA 59.137 33.333 0.00 0.00 0.00 2.52
22 23 7.863375 TCCACCAAAACACGATATTACAAAAAG 59.137 33.333 0.00 0.00 0.00 2.27
23 24 7.648510 GTCCACCAAAACACGATATTACAAAAA 59.351 33.333 0.00 0.00 0.00 1.94
24 25 7.013464 AGTCCACCAAAACACGATATTACAAAA 59.987 33.333 0.00 0.00 0.00 2.44
25 26 6.487331 AGTCCACCAAAACACGATATTACAAA 59.513 34.615 0.00 0.00 0.00 2.83
26 27 5.998981 AGTCCACCAAAACACGATATTACAA 59.001 36.000 0.00 0.00 0.00 2.41
27 28 5.553123 AGTCCACCAAAACACGATATTACA 58.447 37.500 0.00 0.00 0.00 2.41
28 29 6.490566 AAGTCCACCAAAACACGATATTAC 57.509 37.500 0.00 0.00 0.00 1.89
29 30 8.795842 ATAAAGTCCACCAAAACACGATATTA 57.204 30.769 0.00 0.00 0.00 0.98
30 31 7.696992 ATAAAGTCCACCAAAACACGATATT 57.303 32.000 0.00 0.00 0.00 1.28
31 32 7.392113 TCAATAAAGTCCACCAAAACACGATAT 59.608 33.333 0.00 0.00 0.00 1.63
32 33 6.711194 TCAATAAAGTCCACCAAAACACGATA 59.289 34.615 0.00 0.00 0.00 2.92
33 34 5.533154 TCAATAAAGTCCACCAAAACACGAT 59.467 36.000 0.00 0.00 0.00 3.73
34 35 4.882427 TCAATAAAGTCCACCAAAACACGA 59.118 37.500 0.00 0.00 0.00 4.35
35 36 5.176407 TCAATAAAGTCCACCAAAACACG 57.824 39.130 0.00 0.00 0.00 4.49
41 42 4.634004 CGCACTATCAATAAAGTCCACCAA 59.366 41.667 0.00 0.00 0.00 3.67
44 45 6.480320 AGAATCGCACTATCAATAAAGTCCAC 59.520 38.462 0.00 0.00 0.00 4.02
48 49 7.336931 ACCAAAGAATCGCACTATCAATAAAGT 59.663 33.333 0.00 0.00 0.00 2.66
53 54 7.498900 TGAATACCAAAGAATCGCACTATCAAT 59.501 33.333 0.00 0.00 0.00 2.57
58 59 4.873827 GGTGAATACCAAAGAATCGCACTA 59.126 41.667 0.00 0.00 46.71 2.74
59 60 3.689649 GGTGAATACCAAAGAATCGCACT 59.310 43.478 0.00 0.00 46.71 4.40
75 76 9.342308 CATATAAGTATGAGTTGGTTGGTGAAT 57.658 33.333 0.00 0.00 40.12 2.57
76 77 8.325787 ACATATAAGTATGAGTTGGTTGGTGAA 58.674 33.333 2.69 0.00 40.12 3.18
79 80 7.857456 TCACATATAAGTATGAGTTGGTTGGT 58.143 34.615 2.69 0.00 40.12 3.67
80 81 8.731275 TTCACATATAAGTATGAGTTGGTTGG 57.269 34.615 2.69 0.00 40.12 3.77
100 102 1.942657 GCAGTGCAAGAGACTTTCACA 59.057 47.619 11.09 0.00 0.00 3.58
104 106 1.945394 CAGTGCAGTGCAAGAGACTTT 59.055 47.619 21.67 0.00 41.47 2.66
106 108 0.250209 CCAGTGCAGTGCAAGAGACT 60.250 55.000 21.67 9.55 41.47 3.24
109 111 0.533531 TCACCAGTGCAGTGCAAGAG 60.534 55.000 21.67 13.42 41.47 2.85
116 118 3.860605 TGCGGTCACCAGTGCAGT 61.861 61.111 0.00 0.00 32.73 4.40
120 122 0.460284 GATACCTGCGGTCACCAGTG 60.460 60.000 3.45 0.00 37.09 3.66
121 123 1.898154 GATACCTGCGGTCACCAGT 59.102 57.895 3.45 0.00 37.09 4.00
122 124 1.226974 CGATACCTGCGGTCACCAG 60.227 63.158 3.45 0.00 37.09 4.00
123 125 1.980232 ACGATACCTGCGGTCACCA 60.980 57.895 3.45 0.00 37.09 4.17
124 126 1.518572 CACGATACCTGCGGTCACC 60.519 63.158 3.45 0.00 37.09 4.02
125 127 0.389426 AACACGATACCTGCGGTCAC 60.389 55.000 3.45 0.15 37.09 3.67
126 128 0.389296 CAACACGATACCTGCGGTCA 60.389 55.000 3.45 0.00 37.09 4.02
127 129 1.082117 CCAACACGATACCTGCGGTC 61.082 60.000 3.45 0.00 37.09 4.79
128 130 1.079405 CCAACACGATACCTGCGGT 60.079 57.895 5.58 5.58 40.16 5.68
129 131 1.079405 ACCAACACGATACCTGCGG 60.079 57.895 0.00 0.00 0.00 5.69
130 132 1.966493 GCACCAACACGATACCTGCG 61.966 60.000 0.00 0.00 0.00 5.18
131 133 0.673644 AGCACCAACACGATACCTGC 60.674 55.000 0.00 0.00 0.00 4.85
132 134 2.268298 GTAGCACCAACACGATACCTG 58.732 52.381 0.00 0.00 0.00 4.00
133 135 1.135199 CGTAGCACCAACACGATACCT 60.135 52.381 0.00 0.00 37.89 3.08
140 142 0.531090 TGACACCGTAGCACCAACAC 60.531 55.000 0.00 0.00 0.00 3.32
148 150 4.628074 ACACCAATATATGACACCGTAGC 58.372 43.478 0.00 0.00 0.00 3.58
174 176 5.181245 CCTCTCGCCACATAGAAAAAGAAAA 59.819 40.000 0.00 0.00 0.00 2.29
175 177 4.695455 CCTCTCGCCACATAGAAAAAGAAA 59.305 41.667 0.00 0.00 0.00 2.52
178 180 3.619038 GTCCTCTCGCCACATAGAAAAAG 59.381 47.826 0.00 0.00 0.00 2.27
182 184 1.847328 TGTCCTCTCGCCACATAGAA 58.153 50.000 0.00 0.00 0.00 2.10
187 189 2.659063 CCCATGTCCTCTCGCCACA 61.659 63.158 0.00 0.00 0.00 4.17
190 192 2.764128 TCCCCATGTCCTCTCGCC 60.764 66.667 0.00 0.00 0.00 5.54
201 203 0.772384 TAAAACACACCGGTCCCCAT 59.228 50.000 2.59 0.00 0.00 4.00
204 206 0.109153 ACCTAAAACACACCGGTCCC 59.891 55.000 2.59 0.00 0.00 4.46
207 209 1.064537 ACCAACCTAAAACACACCGGT 60.065 47.619 0.00 0.00 0.00 5.28
208 210 1.605232 GACCAACCTAAAACACACCGG 59.395 52.381 0.00 0.00 0.00 5.28
210 212 2.291365 ACGACCAACCTAAAACACACC 58.709 47.619 0.00 0.00 0.00 4.16
213 215 3.487879 CCACAACGACCAACCTAAAACAC 60.488 47.826 0.00 0.00 0.00 3.32
214 216 2.683867 CCACAACGACCAACCTAAAACA 59.316 45.455 0.00 0.00 0.00 2.83
215 217 2.944349 TCCACAACGACCAACCTAAAAC 59.056 45.455 0.00 0.00 0.00 2.43
216 218 3.278668 TCCACAACGACCAACCTAAAA 57.721 42.857 0.00 0.00 0.00 1.52
220 222 3.495434 TTAATCCACAACGACCAACCT 57.505 42.857 0.00 0.00 0.00 3.50
221 223 4.776795 AATTAATCCACAACGACCAACC 57.223 40.909 0.00 0.00 0.00 3.77
222 224 7.586747 TCTTAAATTAATCCACAACGACCAAC 58.413 34.615 0.00 0.00 0.00 3.77
223 225 7.747155 TCTTAAATTAATCCACAACGACCAA 57.253 32.000 0.00 0.00 0.00 3.67
224 226 7.747155 TTCTTAAATTAATCCACAACGACCA 57.253 32.000 0.00 0.00 0.00 4.02
225 227 9.285770 GATTTCTTAAATTAATCCACAACGACC 57.714 33.333 0.00 0.00 0.00 4.79
226 228 8.995906 CGATTTCTTAAATTAATCCACAACGAC 58.004 33.333 0.00 0.00 0.00 4.34
228 230 8.889849 ACGATTTCTTAAATTAATCCACAACG 57.110 30.769 0.00 0.00 0.00 4.10
238 240 9.443323 TGACTGGATCAACGATTTCTTAAATTA 57.557 29.630 0.00 0.00 33.02 1.40
239 241 8.335532 TGACTGGATCAACGATTTCTTAAATT 57.664 30.769 0.00 0.00 33.02 1.82
240 242 7.921786 TGACTGGATCAACGATTTCTTAAAT 57.078 32.000 0.00 0.00 33.02 1.40
241 243 7.737972 TTGACTGGATCAACGATTTCTTAAA 57.262 32.000 0.00 0.00 42.62 1.52
257 259 6.053005 AGTTTGACTCGTAATTTTGACTGGA 58.947 36.000 0.00 0.00 0.00 3.86
285 287 9.893634 TCGGAATCAATTCTAAGGTGTTTAATA 57.106 29.630 2.96 0.00 37.00 0.98
292 294 6.030228 GCTTTTCGGAATCAATTCTAAGGTG 58.970 40.000 2.96 0.00 37.00 4.00
293 295 5.125578 GGCTTTTCGGAATCAATTCTAAGGT 59.874 40.000 2.96 0.00 37.00 3.50
299 301 3.487563 ACGGCTTTTCGGAATCAATTC 57.512 42.857 0.00 0.00 36.08 2.17
309 311 1.792006 ACTAGGTCAACGGCTTTTCG 58.208 50.000 0.00 0.00 0.00 3.46
310 312 3.135994 TGAACTAGGTCAACGGCTTTTC 58.864 45.455 8.37 0.00 0.00 2.29
311 313 3.202829 TGAACTAGGTCAACGGCTTTT 57.797 42.857 8.37 0.00 0.00 2.27
315 317 3.071479 TGATTTGAACTAGGTCAACGGC 58.929 45.455 22.82 14.59 37.24 5.68
325 327 7.465353 TGGATTTGCTTCATGATTTGAACTA 57.535 32.000 0.00 0.00 39.44 2.24
326 328 6.349243 TGGATTTGCTTCATGATTTGAACT 57.651 33.333 0.00 0.00 39.44 3.01
337 339 5.178438 GGCGTTTAATTTTGGATTTGCTTCA 59.822 36.000 0.00 0.00 0.00 3.02
338 340 5.617609 GGCGTTTAATTTTGGATTTGCTTC 58.382 37.500 0.00 0.00 0.00 3.86
359 361 0.958822 ATTTGAACTGGGTCAACGGC 59.041 50.000 0.09 0.00 37.24 5.68
362 364 5.452078 TTCATGATTTGAACTGGGTCAAC 57.548 39.130 0.00 0.00 39.44 3.18
363 365 4.022068 GCTTCATGATTTGAACTGGGTCAA 60.022 41.667 0.00 0.00 39.44 3.18
364 366 3.507233 GCTTCATGATTTGAACTGGGTCA 59.493 43.478 0.00 0.00 39.44 4.02
365 367 3.426695 CGCTTCATGATTTGAACTGGGTC 60.427 47.826 0.00 0.00 39.44 4.46
366 368 2.489329 CGCTTCATGATTTGAACTGGGT 59.511 45.455 0.00 0.00 39.44 4.51
367 369 2.489329 ACGCTTCATGATTTGAACTGGG 59.511 45.455 0.00 0.00 39.44 4.45
368 370 3.837213 ACGCTTCATGATTTGAACTGG 57.163 42.857 0.00 0.00 39.44 4.00
369 371 8.390354 TCTAAATACGCTTCATGATTTGAACTG 58.610 33.333 0.00 0.00 39.44 3.16
371 373 9.374960 GATCTAAATACGCTTCATGATTTGAAC 57.625 33.333 0.00 0.00 39.44 3.18
373 375 7.651704 TCGATCTAAATACGCTTCATGATTTGA 59.348 33.333 0.00 0.00 0.00 2.69
374 376 7.787084 TCGATCTAAATACGCTTCATGATTTG 58.213 34.615 0.00 0.00 0.00 2.32
376 378 7.946655 TTCGATCTAAATACGCTTCATGATT 57.053 32.000 0.00 0.00 0.00 2.57
378 380 7.254319 GGTTTTCGATCTAAATACGCTTCATGA 60.254 37.037 0.00 0.00 0.00 3.07
379 381 6.846283 GGTTTTCGATCTAAATACGCTTCATG 59.154 38.462 0.00 0.00 0.00 3.07
381 383 5.292589 GGGTTTTCGATCTAAATACGCTTCA 59.707 40.000 0.00 0.00 0.00 3.02
382 384 5.292589 TGGGTTTTCGATCTAAATACGCTTC 59.707 40.000 15.52 0.00 0.00 3.86
383 385 5.180271 TGGGTTTTCGATCTAAATACGCTT 58.820 37.500 15.52 0.00 0.00 4.68
384 386 4.761975 TGGGTTTTCGATCTAAATACGCT 58.238 39.130 15.52 0.00 0.00 5.07
397 412 1.336795 GGGCACTGAATTGGGTTTTCG 60.337 52.381 0.00 0.00 0.00 3.46
398 413 1.691434 TGGGCACTGAATTGGGTTTTC 59.309 47.619 0.00 0.00 0.00 2.29
399 414 1.693606 CTGGGCACTGAATTGGGTTTT 59.306 47.619 0.00 0.00 0.00 2.43
400 415 1.341080 CTGGGCACTGAATTGGGTTT 58.659 50.000 0.00 0.00 0.00 3.27
401 416 0.542702 CCTGGGCACTGAATTGGGTT 60.543 55.000 0.00 0.00 0.00 4.11
402 417 1.077265 CCTGGGCACTGAATTGGGT 59.923 57.895 0.00 0.00 0.00 4.51
403 418 2.353610 GCCTGGGCACTGAATTGGG 61.354 63.158 6.75 0.00 41.49 4.12
404 419 1.304713 AGCCTGGGCACTGAATTGG 60.305 57.895 14.39 0.00 44.88 3.16
405 420 0.609957 TGAGCCTGGGCACTGAATTG 60.610 55.000 14.39 0.00 44.88 2.32
406 421 0.333993 ATGAGCCTGGGCACTGAATT 59.666 50.000 14.39 0.00 44.88 2.17
407 422 0.106819 GATGAGCCTGGGCACTGAAT 60.107 55.000 14.39 0.00 44.88 2.57
408 423 1.203441 AGATGAGCCTGGGCACTGAA 61.203 55.000 14.39 0.00 44.88 3.02
409 424 1.614525 AGATGAGCCTGGGCACTGA 60.615 57.895 14.39 0.00 44.88 3.41
410 425 1.451567 CAGATGAGCCTGGGCACTG 60.452 63.158 14.39 12.40 44.88 3.66
411 426 2.996395 CAGATGAGCCTGGGCACT 59.004 61.111 14.39 4.88 44.88 4.40
412 427 2.827642 GCAGATGAGCCTGGGCAC 60.828 66.667 14.39 8.23 44.88 5.01
413 428 3.332385 TGCAGATGAGCCTGGGCA 61.332 61.111 14.39 0.00 44.88 5.36
414 429 2.827642 GTGCAGATGAGCCTGGGC 60.828 66.667 3.00 3.00 42.33 5.36
415 430 2.124403 GGTGCAGATGAGCCTGGG 60.124 66.667 0.00 0.00 34.82 4.45
416 431 2.124403 GGGTGCAGATGAGCCTGG 60.124 66.667 0.00 0.00 34.82 4.45
417 432 2.513204 CGGGTGCAGATGAGCCTG 60.513 66.667 0.00 0.00 37.23 4.85
418 433 2.527951 GAACGGGTGCAGATGAGCCT 62.528 60.000 0.00 0.00 0.00 4.58
419 434 2.045926 AACGGGTGCAGATGAGCC 60.046 61.111 0.00 0.00 0.00 4.70
420 435 0.955428 TTGAACGGGTGCAGATGAGC 60.955 55.000 0.00 0.00 0.00 4.26
421 436 1.522668 TTTGAACGGGTGCAGATGAG 58.477 50.000 0.00 0.00 0.00 2.90
422 437 1.974265 TTTTGAACGGGTGCAGATGA 58.026 45.000 0.00 0.00 0.00 2.92
423 438 2.791383 TTTTTGAACGGGTGCAGATG 57.209 45.000 0.00 0.00 0.00 2.90
451 466 2.726633 CGAACCTCACGCACAATTTTT 58.273 42.857 0.00 0.00 0.00 1.94
452 467 2.399396 CGAACCTCACGCACAATTTT 57.601 45.000 0.00 0.00 0.00 1.82
461 476 2.969443 AATTTGAAGCGAACCTCACG 57.031 45.000 0.00 0.00 0.00 4.35
462 477 4.223320 TGAAATTTGAAGCGAACCTCAC 57.777 40.909 0.00 0.00 0.00 3.51
463 478 4.338118 AGTTGAAATTTGAAGCGAACCTCA 59.662 37.500 0.00 0.00 0.00 3.86
464 479 4.860072 AGTTGAAATTTGAAGCGAACCTC 58.140 39.130 0.00 0.00 0.00 3.85
465 480 4.918810 AGTTGAAATTTGAAGCGAACCT 57.081 36.364 0.00 0.00 0.00 3.50
466 481 7.637709 AATAAGTTGAAATTTGAAGCGAACC 57.362 32.000 0.00 0.00 0.00 3.62
469 484 9.607285 GTCTAAATAAGTTGAAATTTGAAGCGA 57.393 29.630 0.00 0.00 0.00 4.93
470 485 8.567221 CGTCTAAATAAGTTGAAATTTGAAGCG 58.433 33.333 0.00 0.00 0.00 4.68
471 486 9.394477 ACGTCTAAATAAGTTGAAATTTGAAGC 57.606 29.630 0.00 0.00 0.00 3.86
480 495 8.706035 GCTACTCAAACGTCTAAATAAGTTGAA 58.294 33.333 0.00 0.00 0.00 2.69
481 496 8.086522 AGCTACTCAAACGTCTAAATAAGTTGA 58.913 33.333 0.00 0.00 0.00 3.18
482 497 8.240883 AGCTACTCAAACGTCTAAATAAGTTG 57.759 34.615 0.00 0.00 0.00 3.16
483 498 8.305317 AGAGCTACTCAAACGTCTAAATAAGTT 58.695 33.333 0.00 0.00 32.06 2.66
484 499 7.828712 AGAGCTACTCAAACGTCTAAATAAGT 58.171 34.615 0.00 0.00 32.06 2.24
485 500 8.330302 GAGAGCTACTCAAACGTCTAAATAAG 57.670 38.462 7.93 0.00 44.36 1.73
500 515 5.931441 TTTTCTTTTGCTGAGAGCTACTC 57.069 39.130 6.31 6.31 42.97 2.59
520 535 3.315191 CACACTGTTCTGACCCGATTTTT 59.685 43.478 0.00 0.00 0.00 1.94
521 536 2.878406 CACACTGTTCTGACCCGATTTT 59.122 45.455 0.00 0.00 0.00 1.82
522 537 2.158813 ACACACTGTTCTGACCCGATTT 60.159 45.455 0.00 0.00 0.00 2.17
523 538 1.416401 ACACACTGTTCTGACCCGATT 59.584 47.619 0.00 0.00 0.00 3.34
524 539 1.048601 ACACACTGTTCTGACCCGAT 58.951 50.000 0.00 0.00 0.00 4.18
525 540 0.104120 CACACACTGTTCTGACCCGA 59.896 55.000 0.00 0.00 0.00 5.14
526 541 0.104120 TCACACACTGTTCTGACCCG 59.896 55.000 0.00 0.00 0.00 5.28
527 542 1.940613 GTTCACACACTGTTCTGACCC 59.059 52.381 0.00 0.00 0.00 4.46
528 543 2.609459 CTGTTCACACACTGTTCTGACC 59.391 50.000 0.00 0.00 0.00 4.02
529 544 3.262420 ACTGTTCACACACTGTTCTGAC 58.738 45.455 0.00 0.00 0.00 3.51
530 545 3.610040 ACTGTTCACACACTGTTCTGA 57.390 42.857 0.00 0.00 0.00 3.27
531 546 5.351465 AGTTTACTGTTCACACACTGTTCTG 59.649 40.000 0.00 0.00 31.81 3.02
532 547 5.488341 AGTTTACTGTTCACACACTGTTCT 58.512 37.500 0.00 0.00 31.81 3.01
533 548 5.796350 AGTTTACTGTTCACACACTGTTC 57.204 39.130 0.00 0.00 31.81 3.18
534 549 6.569179 AAAGTTTACTGTTCACACACTGTT 57.431 33.333 0.00 0.00 31.81 3.16
535 550 6.569179 AAAAGTTTACTGTTCACACACTGT 57.431 33.333 0.00 0.00 33.75 3.55
582 597 4.431416 TCTGAGTAACTCCCAGCAAAAA 57.569 40.909 0.00 0.00 0.00 1.94
583 598 4.202461 ACATCTGAGTAACTCCCAGCAAAA 60.202 41.667 0.00 0.00 0.00 2.44
584 599 3.327757 ACATCTGAGTAACTCCCAGCAAA 59.672 43.478 0.00 0.00 0.00 3.68
585 600 2.906389 ACATCTGAGTAACTCCCAGCAA 59.094 45.455 0.00 0.00 0.00 3.91
586 601 2.540383 ACATCTGAGTAACTCCCAGCA 58.460 47.619 0.00 0.00 0.00 4.41
587 602 3.055819 TGAACATCTGAGTAACTCCCAGC 60.056 47.826 0.00 0.00 0.00 4.85
588 603 4.808414 TGAACATCTGAGTAACTCCCAG 57.192 45.455 0.00 0.00 0.00 4.45
589 604 5.560722 TTTGAACATCTGAGTAACTCCCA 57.439 39.130 0.00 0.00 0.00 4.37
590 605 6.173339 TCATTTGAACATCTGAGTAACTCCC 58.827 40.000 0.00 0.00 0.00 4.30
591 606 6.876257 ACTCATTTGAACATCTGAGTAACTCC 59.124 38.462 13.96 0.00 44.80 3.85
592 607 7.897575 ACTCATTTGAACATCTGAGTAACTC 57.102 36.000 13.96 0.00 44.80 3.01
593 608 7.933577 TCAACTCATTTGAACATCTGAGTAACT 59.066 33.333 15.13 3.76 45.63 2.24
594 609 8.087982 TCAACTCATTTGAACATCTGAGTAAC 57.912 34.615 15.13 0.00 45.63 2.50
607 622 4.261155 CGCTCCAAGTTTCAACTCATTTGA 60.261 41.667 0.00 0.00 42.83 2.69
608 623 3.976942 CGCTCCAAGTTTCAACTCATTTG 59.023 43.478 0.00 0.00 38.57 2.32
609 624 3.632145 ACGCTCCAAGTTTCAACTCATTT 59.368 39.130 0.00 0.00 38.57 2.32
610 625 3.214328 ACGCTCCAAGTTTCAACTCATT 58.786 40.909 0.00 0.00 38.57 2.57
611 626 2.851195 ACGCTCCAAGTTTCAACTCAT 58.149 42.857 0.00 0.00 38.57 2.90
612 627 2.325583 ACGCTCCAAGTTTCAACTCA 57.674 45.000 0.00 0.00 38.57 3.41
613 628 2.479275 GGTACGCTCCAAGTTTCAACTC 59.521 50.000 0.00 0.00 38.57 3.01
614 629 2.104281 AGGTACGCTCCAAGTTTCAACT 59.896 45.455 0.00 0.00 42.04 3.16
615 630 2.479275 GAGGTACGCTCCAAGTTTCAAC 59.521 50.000 0.00 0.00 0.00 3.18
616 631 2.103432 TGAGGTACGCTCCAAGTTTCAA 59.897 45.455 8.36 0.00 0.00 2.69
617 632 1.689813 TGAGGTACGCTCCAAGTTTCA 59.310 47.619 8.36 0.00 0.00 2.69
618 633 2.450609 TGAGGTACGCTCCAAGTTTC 57.549 50.000 8.36 0.00 0.00 2.78
619 634 2.699954 CATGAGGTACGCTCCAAGTTT 58.300 47.619 8.36 0.00 0.00 2.66
620 635 1.676014 GCATGAGGTACGCTCCAAGTT 60.676 52.381 0.00 0.00 0.00 2.66
621 636 0.108138 GCATGAGGTACGCTCCAAGT 60.108 55.000 0.00 0.00 0.00 3.16
622 637 0.108186 TGCATGAGGTACGCTCCAAG 60.108 55.000 0.00 1.71 0.00 3.61
623 638 0.541392 ATGCATGAGGTACGCTCCAA 59.459 50.000 0.00 0.00 0.00 3.53
624 639 1.408969 TATGCATGAGGTACGCTCCA 58.591 50.000 10.16 1.82 0.00 3.86
625 640 2.526304 TTATGCATGAGGTACGCTCC 57.474 50.000 10.16 0.00 0.00 4.70
626 641 3.458189 AGTTTATGCATGAGGTACGCTC 58.542 45.455 10.16 4.84 0.00 5.03
627 642 3.543680 AGTTTATGCATGAGGTACGCT 57.456 42.857 10.16 0.00 0.00 5.07
628 643 5.696724 AGATAAGTTTATGCATGAGGTACGC 59.303 40.000 10.16 0.00 0.00 4.42
629 644 7.328737 GGTAGATAAGTTTATGCATGAGGTACG 59.671 40.741 10.16 0.00 0.00 3.67
630 645 8.148351 TGGTAGATAAGTTTATGCATGAGGTAC 58.852 37.037 10.16 0.00 0.00 3.34
631 646 8.148351 GTGGTAGATAAGTTTATGCATGAGGTA 58.852 37.037 10.16 0.00 0.00 3.08
632 647 6.992715 GTGGTAGATAAGTTTATGCATGAGGT 59.007 38.462 10.16 0.00 0.00 3.85
633 648 6.992123 TGTGGTAGATAAGTTTATGCATGAGG 59.008 38.462 10.16 0.00 0.00 3.86
634 649 7.495606 TGTGTGGTAGATAAGTTTATGCATGAG 59.504 37.037 10.16 0.00 0.00 2.90
635 650 7.279981 GTGTGTGGTAGATAAGTTTATGCATGA 59.720 37.037 10.16 0.00 0.00 3.07
636 651 7.065683 TGTGTGTGGTAGATAAGTTTATGCATG 59.934 37.037 10.16 0.00 0.00 4.06
637 652 7.109501 TGTGTGTGGTAGATAAGTTTATGCAT 58.890 34.615 3.79 3.79 0.00 3.96
638 653 6.468543 TGTGTGTGGTAGATAAGTTTATGCA 58.531 36.000 0.00 0.00 0.00 3.96
639 654 6.978343 TGTGTGTGGTAGATAAGTTTATGC 57.022 37.500 0.00 0.00 0.00 3.14
695 710 2.108075 TCTGCACCCTCCTGATGAAAAA 59.892 45.455 0.00 0.00 0.00 1.94
696 711 1.704628 TCTGCACCCTCCTGATGAAAA 59.295 47.619 0.00 0.00 0.00 2.29
697 712 1.361204 TCTGCACCCTCCTGATGAAA 58.639 50.000 0.00 0.00 0.00 2.69
698 713 1.588239 ATCTGCACCCTCCTGATGAA 58.412 50.000 0.00 0.00 0.00 2.57
699 714 2.091111 TCTATCTGCACCCTCCTGATGA 60.091 50.000 0.00 0.00 0.00 2.92
700 715 2.323599 TCTATCTGCACCCTCCTGATG 58.676 52.381 0.00 0.00 0.00 3.07
701 716 2.783379 TCTATCTGCACCCTCCTGAT 57.217 50.000 0.00 0.00 0.00 2.90
702 717 2.603021 GATCTATCTGCACCCTCCTGA 58.397 52.381 0.00 0.00 0.00 3.86
703 718 1.622811 GGATCTATCTGCACCCTCCTG 59.377 57.143 0.00 0.00 0.00 3.86
704 719 1.507300 AGGATCTATCTGCACCCTCCT 59.493 52.381 0.00 0.00 0.00 3.69
705 720 2.022718 AGGATCTATCTGCACCCTCC 57.977 55.000 0.00 0.00 0.00 4.30
706 721 3.238597 AGAAGGATCTATCTGCACCCTC 58.761 50.000 0.00 0.00 32.88 4.30
707 722 3.342926 AGAAGGATCTATCTGCACCCT 57.657 47.619 0.00 0.00 32.88 4.34
708 723 3.389329 TGAAGAAGGATCTATCTGCACCC 59.611 47.826 5.23 0.00 33.77 4.61
709 724 4.679373 TGAAGAAGGATCTATCTGCACC 57.321 45.455 5.23 0.00 33.77 5.01
710 725 5.049543 GCAATGAAGAAGGATCTATCTGCAC 60.050 44.000 10.11 3.66 34.07 4.57
711 726 5.061853 GCAATGAAGAAGGATCTATCTGCA 58.938 41.667 10.26 10.26 35.71 4.41
712 727 5.049543 GTGCAATGAAGAAGGATCTATCTGC 60.050 44.000 0.00 0.00 33.77 4.26
713 728 5.177142 CGTGCAATGAAGAAGGATCTATCTG 59.823 44.000 0.00 0.00 33.77 2.90
714 729 5.163364 ACGTGCAATGAAGAAGGATCTATCT 60.163 40.000 0.00 0.00 33.77 1.98
719 734 8.709386 ATATATACGTGCAATGAAGAAGGATC 57.291 34.615 0.00 0.00 0.00 3.36
745 769 4.396357 TTCCCCCTTGTGTGTGATATTT 57.604 40.909 0.00 0.00 0.00 1.40
747 771 4.396357 TTTTCCCCCTTGTGTGTGATAT 57.604 40.909 0.00 0.00 0.00 1.63
750 774 2.534042 TTTTTCCCCCTTGTGTGTGA 57.466 45.000 0.00 0.00 0.00 3.58
802 831 1.003573 GAGGGAGGAGTGATGGGGT 59.996 63.158 0.00 0.00 0.00 4.95
805 834 2.136878 CCCGAGGGAGGAGTGATGG 61.137 68.421 0.84 0.00 37.50 3.51
844 905 0.796312 ATCATGTGACGGTTGTTCGC 59.204 50.000 0.00 0.00 0.00 4.70
872 933 1.752198 GAAGGGTTTGGGTTTGGGC 59.248 57.895 0.00 0.00 0.00 5.36
881 942 2.770827 GGGGAGGGGAAGGGTTTG 59.229 66.667 0.00 0.00 0.00 2.93
889 961 3.250734 TTTTTCGCGGGGAGGGGA 61.251 61.111 6.13 0.00 0.00 4.81
954 1026 1.610886 GGCCGAGGTATTTATCTGCCC 60.611 57.143 0.00 0.00 39.23 5.36
974 1046 2.281208 TGGGTTTGGTTCGCTCGG 60.281 61.111 0.00 0.00 0.00 4.63
980 1052 1.606601 GGGGCTCTGGGTTTGGTTC 60.607 63.158 0.00 0.00 0.00 3.62
1089 1165 4.373116 GGAGAACCGGCAGCGTCA 62.373 66.667 0.00 0.00 0.00 4.35
1120 1196 4.129737 TCACCTGAGCGCGTAGGC 62.130 66.667 26.29 0.00 37.61 3.93
1124 1200 2.049063 GAACTCACCTGAGCGCGT 60.049 61.111 8.43 0.00 45.79 6.01
1126 1202 1.294659 CCAAGAACTCACCTGAGCGC 61.295 60.000 0.00 0.00 45.79 5.92
1127 1203 1.294659 GCCAAGAACTCACCTGAGCG 61.295 60.000 2.01 0.00 45.79 5.03
1128 1204 0.957888 GGCCAAGAACTCACCTGAGC 60.958 60.000 0.00 0.00 45.79 4.26
1130 1206 0.768221 AGGGCCAAGAACTCACCTGA 60.768 55.000 6.18 0.00 0.00 3.86
1146 1243 2.217745 GGCGGGAGGAGGATAAGGG 61.218 68.421 0.00 0.00 0.00 3.95
1160 1257 0.107945 CAAGAAGGAGAAGGAGGCGG 60.108 60.000 0.00 0.00 0.00 6.13
1191 1288 2.509336 CCGCTAACCAGAGGCACG 60.509 66.667 0.00 0.00 34.74 5.34
1225 1322 1.092345 GCGGAGAAGGGCACAATCTC 61.092 60.000 12.12 12.12 39.06 2.75
1296 1445 3.060866 CCTAGCCGCCATCCCTAC 58.939 66.667 0.00 0.00 0.00 3.18
1300 1449 2.167398 TTATCGCCTAGCCGCCATCC 62.167 60.000 0.00 0.00 0.00 3.51
1301 1450 0.108138 ATTATCGCCTAGCCGCCATC 60.108 55.000 0.00 0.00 0.00 3.51
1302 1451 1.137086 CTATTATCGCCTAGCCGCCAT 59.863 52.381 0.00 0.00 0.00 4.40
1303 1452 0.530744 CTATTATCGCCTAGCCGCCA 59.469 55.000 0.00 0.00 0.00 5.69
1304 1453 0.179108 CCTATTATCGCCTAGCCGCC 60.179 60.000 0.00 0.00 0.00 6.13
1305 1454 0.179108 CCCTATTATCGCCTAGCCGC 60.179 60.000 0.00 0.00 0.00 6.53
1306 1455 0.460311 CCCCTATTATCGCCTAGCCG 59.540 60.000 0.00 0.00 0.00 5.52
1307 1456 0.831307 CCCCCTATTATCGCCTAGCC 59.169 60.000 0.00 0.00 0.00 3.93
1308 1457 1.569653 ACCCCCTATTATCGCCTAGC 58.430 55.000 0.00 0.00 0.00 3.42
1309 1458 5.750352 TTAAACCCCCTATTATCGCCTAG 57.250 43.478 0.00 0.00 0.00 3.02
1310 1459 6.502863 AGATTTAAACCCCCTATTATCGCCTA 59.497 38.462 0.00 0.00 0.00 3.93
1311 1460 5.312443 AGATTTAAACCCCCTATTATCGCCT 59.688 40.000 0.00 0.00 0.00 5.52
1312 1461 5.414765 CAGATTTAAACCCCCTATTATCGCC 59.585 44.000 0.00 0.00 0.00 5.54
1313 1462 6.002082 ACAGATTTAAACCCCCTATTATCGC 58.998 40.000 0.00 0.00 0.00 4.58
1314 1463 7.387948 CAGACAGATTTAAACCCCCTATTATCG 59.612 40.741 0.00 0.00 0.00 2.92
1315 1464 8.218488 ACAGACAGATTTAAACCCCCTATTATC 58.782 37.037 0.00 0.00 0.00 1.75
1316 1465 7.998964 CACAGACAGATTTAAACCCCCTATTAT 59.001 37.037 0.00 0.00 0.00 1.28
1317 1466 7.343357 CACAGACAGATTTAAACCCCCTATTA 58.657 38.462 0.00 0.00 0.00 0.98
1318 1467 6.187682 CACAGACAGATTTAAACCCCCTATT 58.812 40.000 0.00 0.00 0.00 1.73
1319 1468 5.755849 CACAGACAGATTTAAACCCCCTAT 58.244 41.667 0.00 0.00 0.00 2.57
1320 1469 4.566907 GCACAGACAGATTTAAACCCCCTA 60.567 45.833 0.00 0.00 0.00 3.53
1321 1470 3.814316 GCACAGACAGATTTAAACCCCCT 60.814 47.826 0.00 0.00 0.00 4.79
1322 1471 2.492088 GCACAGACAGATTTAAACCCCC 59.508 50.000 0.00 0.00 0.00 5.40
1350 1500 1.069636 CAAGAAGTCTCGCAGCAAACC 60.070 52.381 0.00 0.00 0.00 3.27
1354 1504 0.250038 AAGCAAGAAGTCTCGCAGCA 60.250 50.000 0.00 0.00 0.00 4.41
1364 1514 5.401674 GCAAACATCTTCAGAAAGCAAGAAG 59.598 40.000 0.00 0.00 39.98 2.85
1381 1582 5.118990 ACTGATACGCATCTTAGCAAACAT 58.881 37.500 0.00 0.00 31.93 2.71
1417 1618 2.858745 TCTTTTTCCCGGAAAGACTGG 58.141 47.619 12.39 3.76 44.27 4.00
1427 1628 3.636282 AATTCAACCGTCTTTTTCCCG 57.364 42.857 0.00 0.00 0.00 5.14
1454 1656 1.004595 CATGTCGACATGCCACAGAG 58.995 55.000 37.56 17.66 45.92 3.35
1519 1730 1.202855 AGTGAGCCAGCACAACAATCT 60.203 47.619 0.00 0.00 41.19 2.40
1527 1738 2.675056 CGCTTCAGTGAGCCAGCAC 61.675 63.158 14.13 0.00 39.51 4.40
1534 1745 3.997021 ACAATTAGTTCCGCTTCAGTGAG 59.003 43.478 0.00 0.00 0.00 3.51
1584 1795 9.891828 TTAAATTGTTCTGCATAAGTACAACTG 57.108 29.630 0.00 0.00 45.48 3.16
1592 1803 8.922058 ATTCTGCTTAAATTGTTCTGCATAAG 57.078 30.769 0.00 0.00 0.00 1.73
1603 1814 6.749118 GTGCCTCAGTTATTCTGCTTAAATTG 59.251 38.462 0.00 0.00 43.32 2.32
1662 1880 9.823647 AATCGAGTTCTGATTCAGTAATTATGT 57.176 29.630 13.23 0.00 30.39 2.29
1692 2037 7.416154 AATGAAATTCTTTGAGCATGTTGTG 57.584 32.000 0.00 0.00 0.00 3.33
1750 2102 2.978278 AGCCCATCAAAGATCTCCCTAG 59.022 50.000 0.00 0.00 0.00 3.02
1751 2103 2.975489 GAGCCCATCAAAGATCTCCCTA 59.025 50.000 0.00 0.00 0.00 3.53
1752 2104 1.773653 GAGCCCATCAAAGATCTCCCT 59.226 52.381 0.00 0.00 0.00 4.20
1920 2278 3.391965 GACACTCATCAGATGCTCCATC 58.608 50.000 5.41 0.00 40.80 3.51
1966 2324 1.631405 TGGCAGATGGAAACCTTTGG 58.369 50.000 0.00 0.00 0.00 3.28
1967 2325 3.967332 ATTGGCAGATGGAAACCTTTG 57.033 42.857 0.00 0.00 0.00 2.77
1968 2326 6.435164 ACTATATTGGCAGATGGAAACCTTT 58.565 36.000 2.53 0.00 0.00 3.11
1978 2336 5.297776 GTGCACAGAAACTATATTGGCAGAT 59.702 40.000 13.17 0.00 0.00 2.90
2012 2371 2.279741 GCACAAACAGTCAGTCAGTCA 58.720 47.619 0.00 0.00 0.00 3.41
2013 2372 2.279741 TGCACAAACAGTCAGTCAGTC 58.720 47.619 0.00 0.00 0.00 3.51
2014 2373 2.401583 TGCACAAACAGTCAGTCAGT 57.598 45.000 0.00 0.00 0.00 3.41
2015 2374 3.434641 CCTATGCACAAACAGTCAGTCAG 59.565 47.826 0.00 0.00 0.00 3.51
2025 2385 7.372451 TGTAAGATGTAACCTATGCACAAAC 57.628 36.000 0.00 0.00 0.00 2.93
2031 2391 7.048512 ACCTCTTTGTAAGATGTAACCTATGC 58.951 38.462 0.00 0.00 35.09 3.14
2077 2437 3.372514 GCTCTTTCTTTTCCTCCATCGTC 59.627 47.826 0.00 0.00 0.00 4.20
2163 2529 3.887110 GCATGGAATTGGACATCTGATCA 59.113 43.478 0.00 0.00 0.00 2.92
2213 2580 6.996509 ACCGTAGTAAAATCTAGTTGACCAA 58.003 36.000 0.00 0.00 0.00 3.67
2226 2593 4.053295 GCAGAGTGTGAACCGTAGTAAAA 58.947 43.478 0.00 0.00 0.00 1.52
2380 2796 9.559732 TGTACTAGCTGTAAAATCATTGCATAT 57.440 29.630 0.00 0.00 32.25 1.78
2404 2820 3.766051 TGTCATATCAGAGCAGAGTGTGT 59.234 43.478 0.00 0.00 0.00 3.72
2405 2821 4.382345 TGTCATATCAGAGCAGAGTGTG 57.618 45.455 0.00 0.00 0.00 3.82
2449 2865 7.692460 ATCTGATCAACTTTGCAGATGTTTA 57.308 32.000 9.85 0.00 44.08 2.01
2458 2874 8.819974 TCAAAAGAAAAATCTGATCAACTTTGC 58.180 29.630 0.00 0.00 0.00 3.68
2468 2884 9.874205 ATGTCAAAACTCAAAAGAAAAATCTGA 57.126 25.926 0.00 0.00 0.00 3.27
2624 3045 6.016860 CACATTTCACAAACATCAGAGAAGGA 60.017 38.462 0.00 0.00 0.00 3.36
2625 3046 6.147581 CACATTTCACAAACATCAGAGAAGG 58.852 40.000 0.00 0.00 0.00 3.46
2626 3047 5.628193 GCACATTTCACAAACATCAGAGAAG 59.372 40.000 0.00 0.00 0.00 2.85
2627 3048 5.300034 AGCACATTTCACAAACATCAGAGAA 59.700 36.000 0.00 0.00 0.00 2.87
2708 3140 2.224719 ACTCCAGCACAGCTCAAAAGAT 60.225 45.455 0.00 0.00 36.40 2.40
2723 3155 4.697352 AGCTGTGCTAACAATTTACTCCAG 59.303 41.667 0.00 0.00 36.99 3.86
2763 3195 7.290014 AGGGACTTGGTTAAATGACAAGAAAAT 59.710 33.333 10.25 0.00 43.13 1.82
2767 3199 5.073144 AGAGGGACTTGGTTAAATGACAAGA 59.927 40.000 10.25 0.00 43.13 3.02
2982 3414 1.939255 GCTTCAATCCTCTGTAGCAGC 59.061 52.381 0.00 0.00 38.99 5.25
3106 3538 1.167851 ACCGATGACATGCCACAAAG 58.832 50.000 0.00 0.00 0.00 2.77
3185 3617 9.520204 CTCAACAACAGAGTTTGACAAATTTAT 57.480 29.630 3.49 0.00 0.00 1.40
3266 3698 7.255555 CCAGCACAGATTAACATGGCAATTATA 60.256 37.037 0.00 0.00 0.00 0.98
3267 3699 6.461927 CCAGCACAGATTAACATGGCAATTAT 60.462 38.462 0.00 0.00 0.00 1.28
3317 3749 5.467399 TGATGGTTTATCGTGACGAAAAAGT 59.533 36.000 13.14 0.00 39.99 2.66
3318 3750 5.922546 TGATGGTTTATCGTGACGAAAAAG 58.077 37.500 13.14 0.00 39.99 2.27
3335 3767 5.503927 ACAGTCAAAAGATATGCTGATGGT 58.496 37.500 0.00 0.00 0.00 3.55
3336 3768 6.263344 CAACAGTCAAAAGATATGCTGATGG 58.737 40.000 0.00 0.00 0.00 3.51
3337 3769 6.127814 ACCAACAGTCAAAAGATATGCTGATG 60.128 38.462 0.00 0.00 31.35 3.07
3338 3770 5.948162 ACCAACAGTCAAAAGATATGCTGAT 59.052 36.000 0.00 0.00 0.00 2.90
3340 3772 5.633830 ACCAACAGTCAAAAGATATGCTG 57.366 39.130 0.00 0.00 0.00 4.41
3341 3773 5.886960 GACCAACAGTCAAAAGATATGCT 57.113 39.130 0.00 0.00 45.55 3.79
3385 3817 3.498777 GGTGAGCTCAGAAGTACAAAACC 59.501 47.826 18.89 6.23 0.00 3.27
3445 3930 6.061441 TCAAAAGCAAATGAGAGGTGAAGTA 58.939 36.000 0.00 0.00 0.00 2.24
3630 4121 4.684485 GCCTCATACATCAAGCAGGTAGTT 60.684 45.833 0.00 0.00 0.00 2.24
3633 4124 2.104792 GGCCTCATACATCAAGCAGGTA 59.895 50.000 0.00 0.00 0.00 3.08
3825 4317 5.547465 CTTATCGCCTCATAACCATAACCA 58.453 41.667 0.00 0.00 0.00 3.67
3828 4320 5.011635 TCAGCTTATCGCCTCATAACCATAA 59.988 40.000 0.00 0.00 40.39 1.90
3829 4321 4.526650 TCAGCTTATCGCCTCATAACCATA 59.473 41.667 0.00 0.00 40.39 2.74
3830 4322 3.324846 TCAGCTTATCGCCTCATAACCAT 59.675 43.478 0.00 0.00 40.39 3.55
3831 4323 2.698274 TCAGCTTATCGCCTCATAACCA 59.302 45.455 0.00 0.00 40.39 3.67
3832 4324 3.386768 TCAGCTTATCGCCTCATAACC 57.613 47.619 0.00 0.00 40.39 2.85
3833 4325 3.124297 GCATCAGCTTATCGCCTCATAAC 59.876 47.826 0.00 0.00 40.39 1.89
3982 4475 6.653989 AGCAGCAAGACTAAATACCACTAAT 58.346 36.000 0.00 0.00 0.00 1.73
3985 4478 4.559862 AGCAGCAAGACTAAATACCACT 57.440 40.909 0.00 0.00 0.00 4.00
4002 4495 1.747355 CATCCCCAAGCAAGTAAGCAG 59.253 52.381 0.00 0.00 36.85 4.24
4095 4609 8.149647 AGATAGCATATAATTAGGAGCTCATGC 58.850 37.037 17.19 18.06 38.20 4.06
4130 4667 7.923344 CCTTGTGTCTCATTACTATCTTGGTAG 59.077 40.741 0.00 0.00 0.00 3.18
4134 4671 8.660373 GTTTCCTTGTGTCTCATTACTATCTTG 58.340 37.037 0.00 0.00 0.00 3.02
4186 4727 4.046286 TGACCCTGCTTCAAATTATGGT 57.954 40.909 0.00 0.00 0.00 3.55
4195 4736 3.114606 TCTGGATTATGACCCTGCTTCA 58.885 45.455 0.00 0.00 0.00 3.02
4201 4742 2.492025 TGCCTTCTGGATTATGACCCT 58.508 47.619 0.00 0.00 34.57 4.34
4258 4799 3.577334 TTTGGTCCGGGACATGGGC 62.577 63.158 27.32 11.04 33.68 5.36
4520 5064 2.790433 GGCATACTCCAAGTTGTTCCA 58.210 47.619 1.45 0.00 0.00 3.53
4626 5176 5.899299 AGAGCATAATCCTTTTGTGAATGC 58.101 37.500 0.00 0.00 38.76 3.56
4650 5200 1.040339 AAAAGGTCACGGCCAGCAAA 61.040 50.000 2.24 0.00 0.00 3.68
4670 5220 4.095410 TGCGCAAATGTTTTATCTGGAG 57.905 40.909 8.16 0.00 0.00 3.86
4712 5262 9.798994 AATGTATCATTCTGAATTCTTGCTTTC 57.201 29.630 7.05 0.00 0.00 2.62


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.