Multiple sequence alignment - TraesCS7A01G489600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G489600 chr7A 100.000 6044 0 0 1 6044 679759819 679765862 0.000000e+00 11162.0
1 TraesCS7A01G489600 chr7B 94.329 2116 85 15 1644 3752 659258869 659260956 0.000000e+00 3210.0
2 TraesCS7A01G489600 chr7B 88.632 1425 99 36 6 1390 659257476 659258877 0.000000e+00 1676.0
3 TraesCS7A01G489600 chr7B 89.807 1295 73 26 4770 6044 659261897 659263152 0.000000e+00 1605.0
4 TraesCS7A01G489600 chr7B 91.798 951 57 13 3794 4733 659260960 659261900 0.000000e+00 1304.0
5 TraesCS7A01G489600 chr7B 94.340 53 3 0 3742 3794 63564842 63564790 1.400000e-11 82.4
6 TraesCS7A01G489600 chr7D 91.143 2292 126 42 3790 6044 587835539 587837790 0.000000e+00 3037.0
7 TraesCS7A01G489600 chr7D 92.413 2122 110 17 1644 3753 587833459 587835541 0.000000e+00 2979.0
8 TraesCS7A01G489600 chr7D 96.849 603 19 0 788 1390 587832865 587833467 0.000000e+00 1009.0
9 TraesCS7A01G489600 chr7D 84.074 810 65 38 6 777 587831986 587832769 0.000000e+00 723.0
10 TraesCS7A01G489600 chr7D 94.444 54 2 1 3741 3794 540863760 540863708 1.400000e-11 82.4
11 TraesCS7A01G489600 chrUn 85.338 532 26 19 318 838 68602052 68602542 2.510000e-138 503.0
12 TraesCS7A01G489600 chr3B 92.937 269 17 2 1385 1652 243240498 243240765 2.040000e-104 390.0
13 TraesCS7A01G489600 chr3B 94.444 54 3 0 3741 3794 678629093 678629146 3.880000e-12 84.2
14 TraesCS7A01G489600 chr1D 93.182 264 18 0 1389 1652 401204572 401204835 7.350000e-104 388.0
15 TraesCS7A01G489600 chr1D 87.692 65 8 0 3730 3794 90835989 90835925 6.500000e-10 76.8
16 TraesCS7A01G489600 chr1B 92.884 267 19 0 1388 1654 58253325 58253059 7.350000e-104 388.0
17 TraesCS7A01G489600 chr1B 92.857 266 19 0 1389 1654 505094212 505094477 2.640000e-103 387.0
18 TraesCS7A01G489600 chr2B 92.565 269 20 0 1389 1657 101501604 101501336 2.640000e-103 387.0
19 TraesCS7A01G489600 chr2B 92.830 265 19 0 1388 1652 237584491 237584755 9.500000e-103 385.0
20 TraesCS7A01G489600 chr2B 94.545 55 2 1 3741 3794 669186838 669186892 3.880000e-12 84.2
21 TraesCS7A01G489600 chr3D 93.130 262 18 0 1392 1653 603709279 603709018 9.500000e-103 385.0
22 TraesCS7A01G489600 chr3A 92.830 265 19 0 1388 1652 12408732 12408996 9.500000e-103 385.0
23 TraesCS7A01G489600 chr3A 93.103 58 3 1 3737 3794 533623237 533623293 3.880000e-12 84.2
24 TraesCS7A01G489600 chr5B 92.251 271 20 1 1383 1653 375676869 375677138 3.420000e-102 383.0
25 TraesCS7A01G489600 chr5B 94.444 54 3 0 3741 3794 182745423 182745370 3.880000e-12 84.2
26 TraesCS7A01G489600 chr6D 77.719 377 78 4 987 1360 114239182 114238809 6.100000e-55 226.0
27 TraesCS7A01G489600 chr6D 91.525 59 0 5 3751 3809 60141532 60141585 6.500000e-10 76.8
28 TraesCS7A01G489600 chr6A 77.473 364 75 4 987 1348 142790099 142789741 1.710000e-50 211.0
29 TraesCS7A01G489600 chr6B 76.862 376 81 4 987 1359 203931048 203930676 2.210000e-49 207.0
30 TraesCS7A01G489600 chr6B 97.826 46 1 0 3747 3792 193640049 193640004 5.020000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G489600 chr7A 679759819 679765862 6043 False 11162.00 11162 100.00000 1 6044 1 chr7A.!!$F1 6043
1 TraesCS7A01G489600 chr7B 659257476 659263152 5676 False 1948.75 3210 91.14150 6 6044 4 chr7B.!!$F1 6038
2 TraesCS7A01G489600 chr7D 587831986 587837790 5804 False 1937.00 3037 91.11975 6 6044 4 chr7D.!!$F1 6038

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
235 257 0.302288 CTCGGCGTGTTCGTTTTGAA 59.698 50.000 6.85 0.0 39.49 2.69 F
1403 1555 0.033306 GGAGTACTCCCTCCGTCCTT 60.033 60.000 28.87 0.0 43.94 3.36 F
1591 1743 0.102300 GCACAAACTCGGCCAAACTT 59.898 50.000 2.24 0.0 0.00 2.66 F
2503 2671 0.617249 TTCCCAATTCCCCATGGCAC 60.617 55.000 6.09 0.0 35.28 5.01 F
2707 2875 2.232208 TGTTGCATGTTTGTGGTTGTCA 59.768 40.909 0.00 0.0 0.00 3.58 F
3685 3891 0.512518 TCACGCGAAGACATGCTTTG 59.487 50.000 15.93 10.9 40.41 2.77 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1572 1724 0.102300 AAGTTTGGCCGAGTTTGTGC 59.898 50.000 0.00 0.00 0.00 4.57 R
2917 3113 3.300667 GAAGCGGAACACAGCTGCG 62.301 63.158 15.27 6.98 43.78 5.18 R
3407 3613 3.300388 ACCGATGATGTCTATGTGGTCT 58.700 45.455 0.00 0.00 0.00 3.85 R
3686 3892 0.036010 AGGTTGTCCGCCAGAATCAG 60.036 55.000 0.00 0.00 39.05 2.90 R
3753 3959 1.424638 ACATTATGGGACGGAGGGAG 58.575 55.000 0.00 0.00 0.00 4.30 R
5291 5513 0.485099 GGGAGAGGGAGATAGAGGCA 59.515 60.000 0.00 0.00 0.00 4.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
86 90 0.456653 TCGTAAACGCGGTAAGCTCC 60.457 55.000 12.47 0.00 45.59 4.70
89 94 2.242797 TAAACGCGGTAAGCTCCCCC 62.243 60.000 12.47 0.00 45.59 5.40
104 109 2.123382 CCCCTCCCCGTACTCTCC 60.123 72.222 0.00 0.00 0.00 3.71
105 110 2.518825 CCCTCCCCGTACTCTCCG 60.519 72.222 0.00 0.00 0.00 4.63
106 111 2.518825 CCTCCCCGTACTCTCCGG 60.519 72.222 0.00 0.00 45.07 5.14
108 113 4.828296 TCCCCGTACTCTCCGGCC 62.828 72.222 0.00 0.00 44.13 6.13
150 158 2.240230 GTTCCATTCGAACCACGCA 58.760 52.632 0.00 0.00 44.46 5.24
232 254 2.629763 GCTCGGCGTGTTCGTTTT 59.370 55.556 6.85 0.00 39.49 2.43
235 257 0.302288 CTCGGCGTGTTCGTTTTGAA 59.698 50.000 6.85 0.00 39.49 2.69
280 302 2.818274 GAGCGAATTCCGGCGGTT 60.818 61.111 27.32 14.32 38.45 4.44
282 304 2.818274 GCGAATTCCGGCGGTTCT 60.818 61.111 27.32 11.09 39.04 3.01
306 342 4.700365 GTTTCTGTTGGGCGCGGC 62.700 66.667 26.39 26.39 0.00 6.53
307 343 4.947147 TTTCTGTTGGGCGCGGCT 62.947 61.111 32.30 0.00 0.00 5.52
320 356 4.447342 CGGCTGGCTGGGGGAATT 62.447 66.667 0.00 0.00 0.00 2.17
321 357 2.761213 GGCTGGCTGGGGGAATTG 60.761 66.667 0.00 0.00 0.00 2.32
322 358 2.761213 GCTGGCTGGGGGAATTGG 60.761 66.667 0.00 0.00 0.00 3.16
337 376 0.537188 ATTGGTTGGATCGAGCTCGT 59.463 50.000 33.33 21.54 40.80 4.18
599 647 1.478314 CGCGCTTGTTTTGCTTTCG 59.522 52.632 5.56 0.00 0.00 3.46
601 649 0.920664 GCGCTTGTTTTGCTTTCGTT 59.079 45.000 0.00 0.00 0.00 3.85
612 664 1.615107 GCTTTCGTTGGGTCGTCTCG 61.615 60.000 0.00 0.00 0.00 4.04
686 738 2.437359 GGGCTGCAGTGCTAGTGG 60.437 66.667 17.60 2.77 0.00 4.00
705 757 2.351244 TAGAGCAGCCGTCAGGTGG 61.351 63.158 0.00 0.00 44.46 4.61
781 844 8.615878 TCAGCTTGCTTGATTTTTACTACTTA 57.384 30.769 0.00 0.00 0.00 2.24
825 973 0.599991 TGCTGTGCTTACCTCGTGTG 60.600 55.000 0.00 0.00 0.00 3.82
828 976 1.792949 CTGTGCTTACCTCGTGTGTTC 59.207 52.381 0.00 0.00 0.00 3.18
865 1017 1.228988 TGAGGAGTCAGCTGCCTGA 60.229 57.895 15.25 5.09 45.54 3.86
962 1114 1.153862 GTGAGGAGCTGAGAGCACG 60.154 63.158 0.00 0.00 45.56 5.34
963 1115 2.346541 TGAGGAGCTGAGAGCACGG 61.347 63.158 0.00 0.00 45.56 4.94
1066 1218 2.224378 CCCATGTGGATAATCGTGCTCT 60.224 50.000 0.00 0.00 37.39 4.09
1284 1436 3.674423 GTCGAAGAATCCAAAGATTGCG 58.326 45.455 0.00 0.00 42.93 4.85
1387 1539 3.318839 TGTCCTTGTGCAATTTGAAGGAG 59.681 43.478 14.96 0.65 43.66 3.69
1388 1540 3.319122 GTCCTTGTGCAATTTGAAGGAGT 59.681 43.478 14.96 0.00 43.66 3.85
1389 1541 4.518970 GTCCTTGTGCAATTTGAAGGAGTA 59.481 41.667 14.96 0.00 43.66 2.59
1390 1542 4.518970 TCCTTGTGCAATTTGAAGGAGTAC 59.481 41.667 11.93 0.00 39.25 2.73
1391 1543 4.520492 CCTTGTGCAATTTGAAGGAGTACT 59.480 41.667 8.88 0.00 37.74 2.73
1392 1544 5.335191 CCTTGTGCAATTTGAAGGAGTACTC 60.335 44.000 14.87 14.87 37.74 2.59
1401 1553 4.256462 GGAGTACTCCCTCCGTCC 57.744 66.667 28.87 4.17 43.94 4.79
1402 1554 1.614160 GGAGTACTCCCTCCGTCCT 59.386 63.158 28.87 0.00 43.94 3.85
1403 1555 0.033306 GGAGTACTCCCTCCGTCCTT 60.033 60.000 28.87 0.00 43.94 3.36
1404 1556 1.104630 GAGTACTCCCTCCGTCCTTG 58.895 60.000 12.13 0.00 0.00 3.61
1405 1557 0.702902 AGTACTCCCTCCGTCCTTGA 59.297 55.000 0.00 0.00 0.00 3.02
1406 1558 1.076677 AGTACTCCCTCCGTCCTTGAA 59.923 52.381 0.00 0.00 0.00 2.69
1407 1559 1.897802 GTACTCCCTCCGTCCTTGAAA 59.102 52.381 0.00 0.00 0.00 2.69
1408 1560 0.977395 ACTCCCTCCGTCCTTGAAAG 59.023 55.000 0.00 0.00 0.00 2.62
1409 1561 1.267121 CTCCCTCCGTCCTTGAAAGA 58.733 55.000 0.00 0.00 0.00 2.52
1410 1562 1.205893 CTCCCTCCGTCCTTGAAAGAG 59.794 57.143 0.00 0.00 0.00 2.85
1411 1563 0.977395 CCCTCCGTCCTTGAAAGAGT 59.023 55.000 0.00 0.00 0.00 3.24
1412 1564 1.338200 CCCTCCGTCCTTGAAAGAGTG 60.338 57.143 0.00 0.00 0.00 3.51
1413 1565 1.344763 CCTCCGTCCTTGAAAGAGTGT 59.655 52.381 0.00 0.00 0.00 3.55
1414 1566 2.224305 CCTCCGTCCTTGAAAGAGTGTT 60.224 50.000 0.00 0.00 0.00 3.32
1415 1567 3.060602 CTCCGTCCTTGAAAGAGTGTTC 58.939 50.000 0.00 0.00 0.00 3.18
1416 1568 2.698797 TCCGTCCTTGAAAGAGTGTTCT 59.301 45.455 0.00 0.00 34.29 3.01
1417 1569 3.134081 TCCGTCCTTGAAAGAGTGTTCTT 59.866 43.478 0.00 0.00 45.51 2.52
1418 1570 3.495001 CCGTCCTTGAAAGAGTGTTCTTC 59.505 47.826 0.00 0.00 42.80 2.87
1419 1571 4.372656 CGTCCTTGAAAGAGTGTTCTTCT 58.627 43.478 0.00 0.00 42.80 2.85
1420 1572 5.509163 CCGTCCTTGAAAGAGTGTTCTTCTA 60.509 44.000 0.00 0.00 42.80 2.10
1421 1573 5.983720 CGTCCTTGAAAGAGTGTTCTTCTAA 59.016 40.000 0.00 0.00 42.80 2.10
1422 1574 6.074249 CGTCCTTGAAAGAGTGTTCTTCTAAC 60.074 42.308 0.00 0.00 42.80 2.34
1423 1575 6.987404 GTCCTTGAAAGAGTGTTCTTCTAACT 59.013 38.462 0.00 0.00 42.80 2.24
1424 1576 7.496263 GTCCTTGAAAGAGTGTTCTTCTAACTT 59.504 37.037 0.00 0.00 42.80 2.66
1425 1577 8.047310 TCCTTGAAAGAGTGTTCTTCTAACTTT 58.953 33.333 0.00 0.00 42.80 2.66
1426 1578 8.125448 CCTTGAAAGAGTGTTCTTCTAACTTTG 58.875 37.037 0.00 0.00 42.80 2.77
1427 1579 8.561738 TTGAAAGAGTGTTCTTCTAACTTTGT 57.438 30.769 0.00 0.00 42.80 2.83
1428 1580 8.561738 TGAAAGAGTGTTCTTCTAACTTTGTT 57.438 30.769 0.00 0.00 42.80 2.83
1429 1581 8.450964 TGAAAGAGTGTTCTTCTAACTTTGTTG 58.549 33.333 0.00 0.00 42.80 3.33
1430 1582 6.927294 AGAGTGTTCTTCTAACTTTGTTGG 57.073 37.500 0.00 0.00 0.00 3.77
1431 1583 6.650120 AGAGTGTTCTTCTAACTTTGTTGGA 58.350 36.000 0.00 0.00 0.00 3.53
1432 1584 7.110155 AGAGTGTTCTTCTAACTTTGTTGGAA 58.890 34.615 8.50 8.50 0.00 3.53
1433 1585 7.610305 AGAGTGTTCTTCTAACTTTGTTGGAAA 59.390 33.333 9.73 1.18 0.00 3.13
1434 1586 7.762382 AGTGTTCTTCTAACTTTGTTGGAAAG 58.238 34.615 9.73 0.00 0.00 2.62
1435 1587 7.393515 AGTGTTCTTCTAACTTTGTTGGAAAGT 59.606 33.333 9.73 0.00 41.82 2.66
1436 1588 7.696872 GTGTTCTTCTAACTTTGTTGGAAAGTC 59.303 37.037 9.73 4.96 39.36 3.01
1437 1589 7.392113 TGTTCTTCTAACTTTGTTGGAAAGTCA 59.608 33.333 9.73 6.80 39.36 3.41
1438 1590 7.931578 TCTTCTAACTTTGTTGGAAAGTCAA 57.068 32.000 9.73 0.00 39.36 3.18
1439 1591 8.519799 TCTTCTAACTTTGTTGGAAAGTCAAT 57.480 30.769 9.73 0.00 39.36 2.57
1440 1592 8.621286 TCTTCTAACTTTGTTGGAAAGTCAATC 58.379 33.333 9.73 0.00 39.36 2.67
1441 1593 8.519799 TTCTAACTTTGTTGGAAAGTCAATCT 57.480 30.769 6.74 0.00 39.36 2.40
1442 1594 8.519799 TCTAACTTTGTTGGAAAGTCAATCTT 57.480 30.769 0.00 0.00 39.36 2.40
1444 1596 9.586435 CTAACTTTGTTGGAAAGTCAATCTTTT 57.414 29.630 0.00 0.00 45.15 2.27
1445 1597 8.846943 AACTTTGTTGGAAAGTCAATCTTTTT 57.153 26.923 0.00 0.00 45.15 1.94
1474 1626 9.619316 TGTTTGACTGTATTTACACAATAATGC 57.381 29.630 0.00 0.00 31.93 3.56
1475 1627 9.619316 GTTTGACTGTATTTACACAATAATGCA 57.381 29.630 0.00 0.00 31.93 3.96
1476 1628 9.619316 TTTGACTGTATTTACACAATAATGCAC 57.381 29.630 0.00 0.00 31.93 4.57
1477 1629 7.757526 TGACTGTATTTACACAATAATGCACC 58.242 34.615 0.00 0.00 31.93 5.01
1478 1630 7.391833 TGACTGTATTTACACAATAATGCACCA 59.608 33.333 0.00 0.00 31.93 4.17
1479 1631 8.116651 ACTGTATTTACACAATAATGCACCAA 57.883 30.769 0.00 0.00 31.93 3.67
1480 1632 8.026607 ACTGTATTTACACAATAATGCACCAAC 58.973 33.333 0.00 0.00 31.93 3.77
1481 1633 7.886338 TGTATTTACACAATAATGCACCAACA 58.114 30.769 0.00 0.00 0.00 3.33
1482 1634 8.526978 TGTATTTACACAATAATGCACCAACAT 58.473 29.630 0.00 0.00 0.00 2.71
1483 1635 9.364989 GTATTTACACAATAATGCACCAACATT 57.635 29.630 0.00 0.00 42.73 2.71
1484 1636 8.845413 ATTTACACAATAATGCACCAACATTT 57.155 26.923 0.00 0.00 40.64 2.32
1485 1637 9.935241 ATTTACACAATAATGCACCAACATTTA 57.065 25.926 0.00 0.00 40.64 1.40
1486 1638 9.935241 TTTACACAATAATGCACCAACATTTAT 57.065 25.926 0.00 0.00 40.64 1.40
1487 1639 7.830940 ACACAATAATGCACCAACATTTATG 57.169 32.000 0.00 0.00 40.64 1.90
1488 1640 6.313411 ACACAATAATGCACCAACATTTATGC 59.687 34.615 0.00 0.00 40.64 3.14
1489 1641 5.816777 ACAATAATGCACCAACATTTATGCC 59.183 36.000 0.00 0.00 40.64 4.40
1490 1642 3.977134 AATGCACCAACATTTATGCCA 57.023 38.095 0.00 0.00 36.91 4.92
1491 1643 4.490899 AATGCACCAACATTTATGCCAT 57.509 36.364 0.00 0.00 36.91 4.40
1492 1644 3.523606 TGCACCAACATTTATGCCATC 57.476 42.857 0.00 0.00 37.26 3.51
1493 1645 2.830321 TGCACCAACATTTATGCCATCA 59.170 40.909 0.00 0.00 37.26 3.07
1494 1646 3.260128 TGCACCAACATTTATGCCATCAA 59.740 39.130 0.00 0.00 37.26 2.57
1495 1647 4.252073 GCACCAACATTTATGCCATCAAA 58.748 39.130 0.00 0.00 31.71 2.69
1496 1648 4.877251 GCACCAACATTTATGCCATCAAAT 59.123 37.500 0.00 0.00 31.71 2.32
1497 1649 5.354792 GCACCAACATTTATGCCATCAAATT 59.645 36.000 0.00 0.00 31.71 1.82
1498 1650 6.538021 GCACCAACATTTATGCCATCAAATTA 59.462 34.615 0.00 0.00 31.71 1.40
1499 1651 7.254522 GCACCAACATTTATGCCATCAAATTAG 60.255 37.037 0.00 0.00 31.71 1.73
1500 1652 7.765360 CACCAACATTTATGCCATCAAATTAGT 59.235 33.333 0.00 0.00 0.00 2.24
1501 1653 8.976353 ACCAACATTTATGCCATCAAATTAGTA 58.024 29.630 0.00 0.00 0.00 1.82
1502 1654 9.467258 CCAACATTTATGCCATCAAATTAGTAG 57.533 33.333 0.00 0.00 0.00 2.57
1503 1655 8.971321 CAACATTTATGCCATCAAATTAGTAGC 58.029 33.333 0.00 0.00 0.00 3.58
1504 1656 8.236585 ACATTTATGCCATCAAATTAGTAGCA 57.763 30.769 0.00 0.00 0.00 3.49
1505 1657 8.863086 ACATTTATGCCATCAAATTAGTAGCAT 58.137 29.630 0.00 0.00 41.89 3.79
1506 1658 9.701098 CATTTATGCCATCAAATTAGTAGCATT 57.299 29.630 0.00 0.00 39.89 3.56
1509 1661 9.791801 TTATGCCATCAAATTAGTAGCATTAGA 57.208 29.630 0.00 0.00 39.89 2.10
1510 1662 8.874744 ATGCCATCAAATTAGTAGCATTAGAT 57.125 30.769 0.00 0.00 36.10 1.98
1511 1663 8.696043 TGCCATCAAATTAGTAGCATTAGATT 57.304 30.769 0.00 0.00 0.00 2.40
1512 1664 8.786898 TGCCATCAAATTAGTAGCATTAGATTC 58.213 33.333 0.00 0.00 0.00 2.52
1513 1665 8.786898 GCCATCAAATTAGTAGCATTAGATTCA 58.213 33.333 0.00 0.00 0.00 2.57
1565 1717 9.874205 CCTATTTGGTTTCACAAACAATGATAT 57.126 29.630 1.78 0.00 42.51 1.63
1575 1727 9.571810 TTCACAAACAATGATATATTTCTGCAC 57.428 29.630 0.00 0.00 0.00 4.57
1576 1728 8.738106 TCACAAACAATGATATATTTCTGCACA 58.262 29.630 0.00 0.00 0.00 4.57
1577 1729 9.356433 CACAAACAATGATATATTTCTGCACAA 57.644 29.630 0.00 0.00 0.00 3.33
1578 1730 9.926158 ACAAACAATGATATATTTCTGCACAAA 57.074 25.926 0.00 0.00 0.00 2.83
1581 1733 9.793252 AACAATGATATATTTCTGCACAAACTC 57.207 29.630 0.00 0.00 0.00 3.01
1582 1734 8.124823 ACAATGATATATTTCTGCACAAACTCG 58.875 33.333 0.00 0.00 0.00 4.18
1583 1735 6.603237 TGATATATTTCTGCACAAACTCGG 57.397 37.500 0.00 0.00 0.00 4.63
1584 1736 3.764885 ATATTTCTGCACAAACTCGGC 57.235 42.857 0.00 0.00 0.00 5.54
1585 1737 0.598065 ATTTCTGCACAAACTCGGCC 59.402 50.000 0.00 0.00 0.00 6.13
1586 1738 0.749818 TTTCTGCACAAACTCGGCCA 60.750 50.000 2.24 0.00 0.00 5.36
1587 1739 0.749818 TTCTGCACAAACTCGGCCAA 60.750 50.000 2.24 0.00 0.00 4.52
1588 1740 0.749818 TCTGCACAAACTCGGCCAAA 60.750 50.000 2.24 0.00 0.00 3.28
1589 1741 0.594796 CTGCACAAACTCGGCCAAAC 60.595 55.000 2.24 0.00 0.00 2.93
1590 1742 1.034838 TGCACAAACTCGGCCAAACT 61.035 50.000 2.24 0.00 0.00 2.66
1591 1743 0.102300 GCACAAACTCGGCCAAACTT 59.898 50.000 2.24 0.00 0.00 2.66
1592 1744 1.470805 GCACAAACTCGGCCAAACTTT 60.471 47.619 2.24 0.00 0.00 2.66
1593 1745 2.192624 CACAAACTCGGCCAAACTTTG 58.807 47.619 2.24 7.07 0.00 2.77
1594 1746 2.096248 ACAAACTCGGCCAAACTTTGA 58.904 42.857 15.49 0.00 0.00 2.69
1595 1747 2.099098 ACAAACTCGGCCAAACTTTGAG 59.901 45.455 15.49 9.00 0.00 3.02
1596 1748 2.341846 AACTCGGCCAAACTTTGAGA 57.658 45.000 2.24 0.00 0.00 3.27
1597 1749 2.568623 ACTCGGCCAAACTTTGAGAT 57.431 45.000 2.24 0.00 0.00 2.75
1598 1750 3.695830 ACTCGGCCAAACTTTGAGATA 57.304 42.857 2.24 0.00 0.00 1.98
1599 1751 3.600388 ACTCGGCCAAACTTTGAGATAG 58.400 45.455 2.24 0.00 0.00 2.08
1600 1752 3.008049 ACTCGGCCAAACTTTGAGATAGT 59.992 43.478 2.24 0.00 0.00 2.12
1601 1753 4.003648 CTCGGCCAAACTTTGAGATAGTT 58.996 43.478 2.24 0.00 37.43 2.24
1602 1754 4.394729 TCGGCCAAACTTTGAGATAGTTT 58.605 39.130 2.24 0.00 44.38 2.66
1610 1762 5.167303 ACTTTGAGATAGTTTGACCCTCC 57.833 43.478 0.00 0.00 0.00 4.30
1611 1763 4.597507 ACTTTGAGATAGTTTGACCCTCCA 59.402 41.667 0.00 0.00 0.00 3.86
1612 1764 5.073144 ACTTTGAGATAGTTTGACCCTCCAA 59.927 40.000 0.00 0.00 0.00 3.53
1613 1765 4.553330 TGAGATAGTTTGACCCTCCAAC 57.447 45.455 0.00 0.00 0.00 3.77
1614 1766 3.907474 TGAGATAGTTTGACCCTCCAACA 59.093 43.478 0.00 0.00 0.00 3.33
1615 1767 4.349636 TGAGATAGTTTGACCCTCCAACAA 59.650 41.667 0.00 0.00 0.00 2.83
1616 1768 5.163141 TGAGATAGTTTGACCCTCCAACAAA 60.163 40.000 0.00 0.00 0.00 2.83
1617 1769 5.316987 AGATAGTTTGACCCTCCAACAAAG 58.683 41.667 0.00 0.00 34.86 2.77
1618 1770 3.382083 AGTTTGACCCTCCAACAAAGT 57.618 42.857 0.00 0.00 34.86 2.66
1619 1771 3.708451 AGTTTGACCCTCCAACAAAGTT 58.292 40.909 0.00 0.00 34.79 2.66
1620 1772 3.447229 AGTTTGACCCTCCAACAAAGTTG 59.553 43.478 3.00 3.00 34.79 3.16
1621 1773 2.065899 TGACCCTCCAACAAAGTTGG 57.934 50.000 20.09 20.09 40.87 3.77
1622 1774 1.566703 TGACCCTCCAACAAAGTTGGA 59.433 47.619 25.17 25.17 45.61 3.53
1623 1775 2.024846 TGACCCTCCAACAAAGTTGGAA 60.025 45.455 26.25 12.88 46.85 3.53
1624 1776 2.623416 GACCCTCCAACAAAGTTGGAAG 59.377 50.000 26.25 21.51 46.85 3.46
1625 1777 2.024369 ACCCTCCAACAAAGTTGGAAGT 60.024 45.455 26.25 22.95 46.85 3.01
1626 1778 3.203487 ACCCTCCAACAAAGTTGGAAGTA 59.797 43.478 26.25 9.67 46.85 2.24
1627 1779 3.568430 CCCTCCAACAAAGTTGGAAGTAC 59.432 47.826 26.25 0.00 46.85 2.73
1628 1780 4.204012 CCTCCAACAAAGTTGGAAGTACA 58.796 43.478 26.25 8.75 46.85 2.90
1629 1781 4.036380 CCTCCAACAAAGTTGGAAGTACAC 59.964 45.833 26.25 0.00 46.85 2.90
1630 1782 4.850680 TCCAACAAAGTTGGAAGTACACT 58.149 39.130 24.83 0.00 44.90 3.55
1631 1783 4.879545 TCCAACAAAGTTGGAAGTACACTC 59.120 41.667 24.83 0.00 44.90 3.51
1632 1784 4.881850 CCAACAAAGTTGGAAGTACACTCT 59.118 41.667 21.24 0.00 42.06 3.24
1633 1785 5.357032 CCAACAAAGTTGGAAGTACACTCTT 59.643 40.000 21.24 0.00 42.06 2.85
1634 1786 6.127730 CCAACAAAGTTGGAAGTACACTCTTT 60.128 38.462 21.24 0.00 42.06 2.52
1635 1787 6.679327 ACAAAGTTGGAAGTACACTCTTTC 57.321 37.500 0.00 0.00 0.00 2.62
1636 1788 6.177610 ACAAAGTTGGAAGTACACTCTTTCA 58.822 36.000 0.00 0.00 31.87 2.69
1637 1789 6.657541 ACAAAGTTGGAAGTACACTCTTTCAA 59.342 34.615 0.00 0.00 39.65 2.69
1638 1790 6.927294 AAGTTGGAAGTACACTCTTTCAAG 57.073 37.500 0.00 0.00 41.68 3.02
1639 1791 5.368989 AGTTGGAAGTACACTCTTTCAAGG 58.631 41.667 0.00 0.00 41.68 3.61
1640 1792 5.130477 AGTTGGAAGTACACTCTTTCAAGGA 59.870 40.000 0.00 0.00 41.68 3.36
1641 1793 4.957296 TGGAAGTACACTCTTTCAAGGAC 58.043 43.478 0.00 0.00 30.93 3.85
1642 1794 3.988517 GGAAGTACACTCTTTCAAGGACG 59.011 47.826 0.00 0.00 0.00 4.79
1643 1795 3.662247 AGTACACTCTTTCAAGGACGG 57.338 47.619 0.00 0.00 0.00 4.79
1697 1849 4.832266 AGTTTTCATTAACTGATGGTGCCA 59.168 37.500 0.00 0.00 37.00 4.92
1698 1850 5.047802 AGTTTTCATTAACTGATGGTGCCAG 60.048 40.000 0.00 0.00 37.00 4.85
1699 1851 3.719268 TCATTAACTGATGGTGCCAGT 57.281 42.857 0.00 0.00 45.88 4.00
1712 1864 5.109500 TGGTGCCAGTGTATCATCAAATA 57.891 39.130 0.00 0.00 0.00 1.40
1713 1865 5.693961 TGGTGCCAGTGTATCATCAAATAT 58.306 37.500 0.00 0.00 0.00 1.28
1865 2017 5.694231 TTGAACAGTGGAACATCAAGATG 57.306 39.130 8.45 8.45 44.52 2.90
1955 2107 9.708222 GCATACACTTTTGACTATAATCTTGTG 57.292 33.333 0.00 0.00 0.00 3.33
1964 2116 5.130975 TGACTATAATCTTGTGCCTCCATGT 59.869 40.000 0.00 0.00 0.00 3.21
1966 2118 6.058183 ACTATAATCTTGTGCCTCCATGTTC 58.942 40.000 0.00 0.00 0.00 3.18
1972 2124 1.004277 TGTGCCTCCATGTTCCTAACC 59.996 52.381 0.00 0.00 0.00 2.85
1973 2125 1.004277 GTGCCTCCATGTTCCTAACCA 59.996 52.381 0.00 0.00 0.00 3.67
1974 2126 1.922447 TGCCTCCATGTTCCTAACCAT 59.078 47.619 0.00 0.00 0.00 3.55
1975 2127 2.092429 TGCCTCCATGTTCCTAACCATC 60.092 50.000 0.00 0.00 0.00 3.51
1976 2128 2.173569 GCCTCCATGTTCCTAACCATCT 59.826 50.000 0.00 0.00 0.00 2.90
1977 2129 3.745797 GCCTCCATGTTCCTAACCATCTC 60.746 52.174 0.00 0.00 0.00 2.75
1978 2130 3.713764 CCTCCATGTTCCTAACCATCTCT 59.286 47.826 0.00 0.00 0.00 3.10
1979 2131 4.444022 CCTCCATGTTCCTAACCATCTCTG 60.444 50.000 0.00 0.00 0.00 3.35
1980 2132 3.118261 TCCATGTTCCTAACCATCTCTGC 60.118 47.826 0.00 0.00 0.00 4.26
1981 2133 3.370846 CCATGTTCCTAACCATCTCTGCA 60.371 47.826 0.00 0.00 0.00 4.41
1982 2134 4.458397 CATGTTCCTAACCATCTCTGCAT 58.542 43.478 0.00 0.00 0.00 3.96
1983 2135 3.877559 TGTTCCTAACCATCTCTGCATG 58.122 45.455 0.00 0.00 0.00 4.06
1984 2136 3.264193 TGTTCCTAACCATCTCTGCATGT 59.736 43.478 0.00 0.00 0.00 3.21
1985 2137 3.827008 TCCTAACCATCTCTGCATGTC 57.173 47.619 0.00 0.00 0.00 3.06
1986 2138 3.378512 TCCTAACCATCTCTGCATGTCT 58.621 45.455 0.00 0.00 0.00 3.41
1987 2139 4.546674 TCCTAACCATCTCTGCATGTCTA 58.453 43.478 0.00 0.00 0.00 2.59
2187 2355 4.835056 TCTCATCTGTCCTTCAGTTCTTCA 59.165 41.667 0.00 0.00 43.97 3.02
2358 2526 7.649533 TGATATTGATGCCATCTGAAACTTT 57.350 32.000 6.21 0.00 0.00 2.66
2503 2671 0.617249 TTCCCAATTCCCCATGGCAC 60.617 55.000 6.09 0.00 35.28 5.01
2516 2684 3.470709 CCATGGCACTACTTGTATCCTG 58.529 50.000 0.00 0.00 0.00 3.86
2699 2867 4.405116 AGGTTTGATGTTGCATGTTTGT 57.595 36.364 0.00 0.00 0.00 2.83
2700 2868 4.121317 AGGTTTGATGTTGCATGTTTGTG 58.879 39.130 0.00 0.00 0.00 3.33
2701 2869 3.248125 GGTTTGATGTTGCATGTTTGTGG 59.752 43.478 0.00 0.00 0.00 4.17
2702 2870 3.815856 TTGATGTTGCATGTTTGTGGT 57.184 38.095 0.00 0.00 0.00 4.16
2703 2871 3.815856 TGATGTTGCATGTTTGTGGTT 57.184 38.095 0.00 0.00 0.00 3.67
2704 2872 3.455327 TGATGTTGCATGTTTGTGGTTG 58.545 40.909 0.00 0.00 0.00 3.77
2705 2873 3.118847 TGATGTTGCATGTTTGTGGTTGT 60.119 39.130 0.00 0.00 0.00 3.32
2706 2874 2.886081 TGTTGCATGTTTGTGGTTGTC 58.114 42.857 0.00 0.00 0.00 3.18
2707 2875 2.232208 TGTTGCATGTTTGTGGTTGTCA 59.768 40.909 0.00 0.00 0.00 3.58
2708 2876 3.257393 GTTGCATGTTTGTGGTTGTCAA 58.743 40.909 0.00 0.00 0.00 3.18
2709 2877 3.599730 TGCATGTTTGTGGTTGTCAAA 57.400 38.095 0.00 0.00 33.28 2.69
2710 2878 3.930336 TGCATGTTTGTGGTTGTCAAAA 58.070 36.364 0.00 0.00 36.71 2.44
2711 2879 4.511527 TGCATGTTTGTGGTTGTCAAAAT 58.488 34.783 0.00 0.00 36.71 1.82
2712 2880 4.940046 TGCATGTTTGTGGTTGTCAAAATT 59.060 33.333 0.00 0.00 36.71 1.82
2713 2881 5.163784 TGCATGTTTGTGGTTGTCAAAATTG 60.164 36.000 0.00 0.00 36.71 2.32
2714 2882 5.064452 GCATGTTTGTGGTTGTCAAAATTGA 59.936 36.000 0.00 0.00 36.71 2.57
2715 2883 6.402983 GCATGTTTGTGGTTGTCAAAATTGAA 60.403 34.615 0.00 0.00 39.21 2.69
2716 2884 7.679164 GCATGTTTGTGGTTGTCAAAATTGAAT 60.679 33.333 0.00 0.00 39.21 2.57
2717 2885 8.824781 CATGTTTGTGGTTGTCAAAATTGAATA 58.175 29.630 0.00 0.00 39.21 1.75
2718 2886 8.417780 TGTTTGTGGTTGTCAAAATTGAATAG 57.582 30.769 0.00 0.00 39.21 1.73
2719 2887 8.253810 TGTTTGTGGTTGTCAAAATTGAATAGA 58.746 29.630 0.00 0.00 39.21 1.98
2720 2888 8.755018 GTTTGTGGTTGTCAAAATTGAATAGAG 58.245 33.333 0.00 0.00 39.21 2.43
2721 2889 7.581213 TGTGGTTGTCAAAATTGAATAGAGT 57.419 32.000 0.00 0.00 39.21 3.24
2722 2890 8.684386 TGTGGTTGTCAAAATTGAATAGAGTA 57.316 30.769 0.00 0.00 39.21 2.59
2723 2891 9.295825 TGTGGTTGTCAAAATTGAATAGAGTAT 57.704 29.630 0.00 0.00 39.21 2.12
2724 2892 9.559958 GTGGTTGTCAAAATTGAATAGAGTATG 57.440 33.333 0.00 0.00 39.21 2.39
2943 3139 3.751621 CTGTGTTCCGCTTCATTCATTC 58.248 45.455 0.00 0.00 0.00 2.67
2949 3145 4.322080 TCCGCTTCATTCATTCGACTAT 57.678 40.909 0.00 0.00 0.00 2.12
3013 3209 5.881923 TTGGTAAGACTACTGGAACTTGT 57.118 39.130 0.00 0.00 0.00 3.16
3022 3218 8.553459 AGACTACTGGAACTTGTATTTCATTG 57.447 34.615 0.00 0.00 0.00 2.82
3064 3260 7.175797 AGGAAGTAAAGGGGAATTAGTGAAAG 58.824 38.462 0.00 0.00 0.00 2.62
3304 3506 7.164230 TGTGAAGTTGTTTCCTTATTGTTGT 57.836 32.000 0.00 0.00 34.77 3.32
3309 3511 9.575783 GAAGTTGTTTCCTTATTGTTGTTGTTA 57.424 29.630 0.00 0.00 0.00 2.41
3314 3516 9.307121 TGTTTCCTTATTGTTGTTGTTATTGTG 57.693 29.630 0.00 0.00 0.00 3.33
3315 3517 9.522804 GTTTCCTTATTGTTGTTGTTATTGTGA 57.477 29.630 0.00 0.00 0.00 3.58
3323 3528 7.017498 TGTTGTTGTTATTGTGACGTGTATT 57.983 32.000 0.00 0.00 0.00 1.89
3334 3539 4.624024 TGTGACGTGTATTAGTTTGCTAGC 59.376 41.667 8.10 8.10 0.00 3.42
3359 3565 7.562454 TTATATTCCTCCGTTCCAAATTCAC 57.438 36.000 0.00 0.00 0.00 3.18
3365 3571 3.139850 TCCGTTCCAAATTCACGCTTTA 58.860 40.909 0.00 0.00 32.43 1.85
3372 3578 3.423867 CCAAATTCACGCTTTAACCAACG 59.576 43.478 0.00 0.00 0.00 4.10
3411 3617 6.780457 TGTAGTTTATGGTACTGGTAGACC 57.220 41.667 0.00 0.00 36.17 3.85
3421 3627 4.894114 GGTACTGGTAGACCACATAGACAT 59.106 45.833 0.00 0.00 42.01 3.06
3426 3632 4.278419 TGGTAGACCACATAGACATCATCG 59.722 45.833 0.00 0.00 42.01 3.84
3428 3634 3.300388 AGACCACATAGACATCATCGGT 58.700 45.455 0.00 0.00 0.00 4.69
3431 3637 3.706594 ACCACATAGACATCATCGGTTCT 59.293 43.478 0.00 0.00 0.00 3.01
3436 3642 6.925718 CACATAGACATCATCGGTTCTGTATT 59.074 38.462 0.00 0.00 0.00 1.89
3462 3668 8.190122 TCAAAAGCACTTTCATATTATTGCGAT 58.810 29.630 0.00 0.00 35.10 4.58
3475 3681 9.676195 CATATTATTGCGATTTTCATAACCACA 57.324 29.630 0.00 0.00 0.00 4.17
3494 3700 5.600484 ACCACACCTTGTATTTTGAAATGGA 59.400 36.000 0.00 0.00 0.00 3.41
3496 3702 6.015519 CCACACCTTGTATTTTGAAATGGAGA 60.016 38.462 0.00 0.00 0.00 3.71
3497 3703 6.863126 CACACCTTGTATTTTGAAATGGAGAC 59.137 38.462 0.00 0.00 0.00 3.36
3520 3726 4.028825 AGTATAGTACTTGTGGGTCCACC 58.971 47.826 16.57 0.00 45.63 4.61
3539 3745 6.415573 GTCCACCGTTTGTTATTTTAGTTGTG 59.584 38.462 0.00 0.00 0.00 3.33
3569 3775 7.835634 TTTGTTTTCAGTTTTTCCATGGTAC 57.164 32.000 12.58 6.32 0.00 3.34
3586 3792 4.385825 TGGTACAAAGCTAACTTGTCCAG 58.614 43.478 5.55 0.00 35.85 3.86
3631 3837 6.380846 AGAATCTAGTCTCACATGCTCTCTTT 59.619 38.462 0.00 0.00 0.00 2.52
3632 3838 5.321959 TCTAGTCTCACATGCTCTCTTTG 57.678 43.478 0.00 0.00 0.00 2.77
3640 3846 6.148315 TCTCACATGCTCTCTTTGTGTAATTG 59.852 38.462 0.00 0.00 41.14 2.32
3649 3855 6.728200 TCTCTTTGTGTAATTGTTGCTCTTG 58.272 36.000 0.00 0.00 0.00 3.02
3661 3867 6.952773 TTGTTGCTCTTGTTATAGTGGTTT 57.047 33.333 0.00 0.00 0.00 3.27
3685 3891 0.512518 TCACGCGAAGACATGCTTTG 59.487 50.000 15.93 10.90 40.41 2.77
3753 3959 5.243426 TGCAAGGTGTGTTTCTTTTCTAC 57.757 39.130 0.00 0.00 0.00 2.59
3754 3960 4.947388 TGCAAGGTGTGTTTCTTTTCTACT 59.053 37.500 0.00 0.00 0.00 2.57
3755 3961 5.065988 TGCAAGGTGTGTTTCTTTTCTACTC 59.934 40.000 0.00 0.00 0.00 2.59
3756 3962 5.505819 GCAAGGTGTGTTTCTTTTCTACTCC 60.506 44.000 0.00 0.00 0.00 3.85
3757 3963 4.715713 AGGTGTGTTTCTTTTCTACTCCC 58.284 43.478 0.00 0.00 0.00 4.30
3758 3964 4.412528 AGGTGTGTTTCTTTTCTACTCCCT 59.587 41.667 0.00 0.00 0.00 4.20
3759 3965 4.755629 GGTGTGTTTCTTTTCTACTCCCTC 59.244 45.833 0.00 0.00 0.00 4.30
3760 3966 4.755629 GTGTGTTTCTTTTCTACTCCCTCC 59.244 45.833 0.00 0.00 0.00 4.30
3761 3967 3.995048 GTGTTTCTTTTCTACTCCCTCCG 59.005 47.826 0.00 0.00 0.00 4.63
3762 3968 3.644738 TGTTTCTTTTCTACTCCCTCCGT 59.355 43.478 0.00 0.00 0.00 4.69
3763 3969 4.244066 GTTTCTTTTCTACTCCCTCCGTC 58.756 47.826 0.00 0.00 0.00 4.79
3764 3970 2.454538 TCTTTTCTACTCCCTCCGTCC 58.545 52.381 0.00 0.00 0.00 4.79
3765 3971 1.481363 CTTTTCTACTCCCTCCGTCCC 59.519 57.143 0.00 0.00 0.00 4.46
3766 3972 0.410663 TTTCTACTCCCTCCGTCCCA 59.589 55.000 0.00 0.00 0.00 4.37
3767 3973 0.635009 TTCTACTCCCTCCGTCCCAT 59.365 55.000 0.00 0.00 0.00 4.00
3768 3974 1.526315 TCTACTCCCTCCGTCCCATA 58.474 55.000 0.00 0.00 0.00 2.74
3769 3975 1.854939 TCTACTCCCTCCGTCCCATAA 59.145 52.381 0.00 0.00 0.00 1.90
3770 3976 2.449730 TCTACTCCCTCCGTCCCATAAT 59.550 50.000 0.00 0.00 0.00 1.28
3771 3977 1.424638 ACTCCCTCCGTCCCATAATG 58.575 55.000 0.00 0.00 0.00 1.90
3772 3978 1.344087 ACTCCCTCCGTCCCATAATGT 60.344 52.381 0.00 0.00 0.00 2.71
3773 3979 2.090943 ACTCCCTCCGTCCCATAATGTA 60.091 50.000 0.00 0.00 0.00 2.29
3774 3980 2.969950 CTCCCTCCGTCCCATAATGTAA 59.030 50.000 0.00 0.00 0.00 2.41
3775 3981 2.969950 TCCCTCCGTCCCATAATGTAAG 59.030 50.000 0.00 0.00 0.00 2.34
3776 3982 2.969950 CCCTCCGTCCCATAATGTAAGA 59.030 50.000 0.00 0.00 0.00 2.10
3777 3983 3.244112 CCCTCCGTCCCATAATGTAAGAC 60.244 52.174 0.00 0.00 0.00 3.01
3779 3985 3.025978 TCCGTCCCATAATGTAAGACGT 58.974 45.455 9.63 0.00 46.62 4.34
3780 3986 3.448301 TCCGTCCCATAATGTAAGACGTT 59.552 43.478 9.63 0.00 46.62 3.99
3781 3987 4.081531 TCCGTCCCATAATGTAAGACGTTT 60.082 41.667 9.63 0.00 46.62 3.60
3782 3988 4.632688 CCGTCCCATAATGTAAGACGTTTT 59.367 41.667 9.63 0.00 46.62 2.43
3783 3989 5.122711 CCGTCCCATAATGTAAGACGTTTTT 59.877 40.000 9.63 0.00 46.62 1.94
3810 4016 7.386848 TCACACTAGTTGCTATCTTTGGTTAAC 59.613 37.037 0.00 0.00 0.00 2.01
3826 4032 6.989155 TGGTTAACGGATTGGAGATATACT 57.011 37.500 0.00 0.00 0.00 2.12
3829 4035 7.946219 TGGTTAACGGATTGGAGATATACTAGA 59.054 37.037 0.00 0.00 0.00 2.43
3921 4128 9.872721 AAGGCTAGAGTTGTTATAGTAAAACTC 57.127 33.333 6.34 6.34 45.72 3.01
3949 4156 8.524487 AGTACAGAAATTCAGTAGTTACCTCTG 58.476 37.037 0.00 0.00 35.12 3.35
3979 4186 6.736794 GCAAATAGGCCATAATGAACTGAAGG 60.737 42.308 5.01 0.00 0.00 3.46
3984 4191 5.370880 AGGCCATAATGAACTGAAGGATAGT 59.629 40.000 5.01 0.00 0.00 2.12
3986 4193 6.547510 GGCCATAATGAACTGAAGGATAGTTT 59.452 38.462 0.00 0.00 38.42 2.66
3987 4194 7.068716 GGCCATAATGAACTGAAGGATAGTTTT 59.931 37.037 0.00 0.00 38.42 2.43
3988 4195 7.917505 GCCATAATGAACTGAAGGATAGTTTTG 59.082 37.037 0.00 0.00 38.42 2.44
3989 4196 9.177608 CCATAATGAACTGAAGGATAGTTTTGA 57.822 33.333 0.00 0.00 38.42 2.69
4008 4215 9.088987 AGTTTTGATAACCACTTCCATAAACAT 57.911 29.630 0.00 0.00 0.00 2.71
4017 4224 7.830739 ACCACTTCCATAAACATCAGAAAATC 58.169 34.615 0.00 0.00 0.00 2.17
4032 4239 7.509141 TCAGAAAATCAATGTGCAAACTCTA 57.491 32.000 0.00 0.00 0.00 2.43
4034 4241 8.239314 TCAGAAAATCAATGTGCAAACTCTATC 58.761 33.333 0.00 0.00 0.00 2.08
4151 4366 2.715046 TCTGGGATGCATTTGAGTGAC 58.285 47.619 0.00 0.00 0.00 3.67
4152 4367 2.040145 TCTGGGATGCATTTGAGTGACA 59.960 45.455 0.00 0.00 0.00 3.58
4171 4386 3.674997 ACATGCTTGTTCGGTAGTCATT 58.325 40.909 0.00 0.00 29.55 2.57
4172 4387 3.684788 ACATGCTTGTTCGGTAGTCATTC 59.315 43.478 0.00 0.00 29.55 2.67
4207 4422 6.486657 TCTCAACCAATACTTGAGTTTTCCAG 59.513 38.462 7.78 0.00 43.51 3.86
4210 4425 6.635030 ACCAATACTTGAGTTTTCCAGTTC 57.365 37.500 0.00 0.00 32.15 3.01
4237 4452 3.806316 TTTCTCCGACATTTTTCTCGC 57.194 42.857 0.00 0.00 0.00 5.03
4239 4454 2.337583 TCTCCGACATTTTTCTCGCAG 58.662 47.619 0.00 0.00 0.00 5.18
4242 4457 1.128692 CCGACATTTTTCTCGCAGGTC 59.871 52.381 0.00 0.00 0.00 3.85
4377 4595 8.454106 ACAATCTACAGAAGTTGCATTTACATC 58.546 33.333 0.00 0.00 0.00 3.06
4404 4623 8.436046 TTTTTCCTTTAGTTACTTGCGAACTA 57.564 30.769 0.00 0.00 38.16 2.24
4465 4684 4.202284 GGTGGAATAGCTAATTGGTCGGTA 60.202 45.833 0.00 0.00 0.00 4.02
4507 4726 0.740737 GGAAATGGCATCCAAGGTCG 59.259 55.000 0.00 0.00 36.95 4.79
4574 4793 5.232463 CAGTATGTTTTTGCCTTGCTTGAT 58.768 37.500 0.00 0.00 0.00 2.57
4737 4956 2.276201 TCGCCATCAGTATTTTGACCG 58.724 47.619 0.00 0.00 0.00 4.79
4741 4960 3.627577 GCCATCAGTATTTTGACCGTCAT 59.372 43.478 1.09 0.00 0.00 3.06
4793 5012 7.713764 TTTTTCTTCTAAATCTTGCCTTTGC 57.286 32.000 0.00 0.00 38.26 3.68
4813 5032 7.066163 CCTTTGCAGAAACTTTTCCTTTGATTT 59.934 33.333 0.00 0.00 37.92 2.17
4860 5079 5.860941 TCTGTATTGCAAAACTTTCCCAA 57.139 34.783 1.71 0.00 0.00 4.12
5107 5326 1.747924 TGAGCATGTCTCCTCTCTTCG 59.252 52.381 12.62 0.00 41.18 3.79
5268 5490 7.094205 CCCTCAGTTGTAATCTATTGTGCTTTT 60.094 37.037 0.00 0.00 0.00 2.27
5282 5504 7.713764 ATTGTGCTTTTTGTATGTTTCCTTC 57.286 32.000 0.00 0.00 0.00 3.46
5291 5513 7.654022 TTTGTATGTTTCCTTCAAGTCCTTT 57.346 32.000 0.00 0.00 0.00 3.11
5298 5520 3.248024 TCCTTCAAGTCCTTTGCCTCTA 58.752 45.455 0.00 0.00 36.70 2.43
5299 5521 3.846588 TCCTTCAAGTCCTTTGCCTCTAT 59.153 43.478 0.00 0.00 36.70 1.98
5300 5522 4.080863 TCCTTCAAGTCCTTTGCCTCTATC 60.081 45.833 0.00 0.00 36.70 2.08
5301 5523 4.080638 CCTTCAAGTCCTTTGCCTCTATCT 60.081 45.833 0.00 0.00 36.70 1.98
5302 5524 4.744795 TCAAGTCCTTTGCCTCTATCTC 57.255 45.455 0.00 0.00 36.70 2.75
5303 5525 3.452627 TCAAGTCCTTTGCCTCTATCTCC 59.547 47.826 0.00 0.00 36.70 3.71
5450 5680 9.739276 TGATTGAGAAGTACCACATATCTTTTT 57.261 29.630 0.00 0.00 0.00 1.94
5462 5692 8.361139 ACCACATATCTTTTTATAGTCTCTCGG 58.639 37.037 0.00 0.00 0.00 4.63
5463 5693 8.361139 CCACATATCTTTTTATAGTCTCTCGGT 58.639 37.037 0.00 0.00 0.00 4.69
5601 5843 5.407387 CCATGGAGCTTGAATTTTGAACAAG 59.593 40.000 5.56 0.00 42.33 3.16
5750 5992 0.383231 GGATGCTTAGCACATGCACC 59.617 55.000 9.82 3.05 43.04 5.01
5755 5997 1.155889 CTTAGCACATGCACCGTTCA 58.844 50.000 6.64 0.00 45.16 3.18
5758 6000 0.819259 AGCACATGCACCGTTCACTT 60.819 50.000 6.64 0.00 45.16 3.16
5766 6008 2.096819 TGCACCGTTCACTTTCAAAGTC 59.903 45.455 0.00 0.00 40.46 3.01
5779 6021 7.706179 TCACTTTCAAAGTCCATGATTTTGTTC 59.294 33.333 0.00 0.00 40.46 3.18
5792 6034 7.388500 CCATGATTTTGTTCCTTTTTATGCAGT 59.612 33.333 0.00 0.00 0.00 4.40
5816 6058 9.328845 AGTTTGCAATTCAAGTTATTTCATTGT 57.671 25.926 0.00 0.00 35.84 2.71
5923 6172 3.699411 ATATCAGGCTCCATGAAGCTC 57.301 47.619 3.19 0.00 42.13 4.09
5935 6184 1.878953 TGAAGCTCGTCCTCCAAAAC 58.121 50.000 0.00 0.00 0.00 2.43
5953 6202 7.699566 TCCAAAACGCCTTAACATTATATCAC 58.300 34.615 0.00 0.00 0.00 3.06
5954 6203 6.631238 CCAAAACGCCTTAACATTATATCACG 59.369 38.462 0.00 0.00 0.00 4.35
5955 6204 6.913873 AAACGCCTTAACATTATATCACGT 57.086 33.333 0.00 0.00 0.00 4.49
5956 6205 5.900339 ACGCCTTAACATTATATCACGTG 57.100 39.130 9.94 9.94 0.00 4.49
5958 6207 4.151689 CGCCTTAACATTATATCACGTGGG 59.848 45.833 17.00 4.98 0.00 4.61
5962 6214 7.360946 GCCTTAACATTATATCACGTGGGAATC 60.361 40.741 17.00 0.00 0.00 2.52
5987 6239 4.379813 CCATGGTTGAATGTGTAAGCAGAC 60.380 45.833 2.57 0.00 37.66 3.51
5990 6242 4.275689 TGGTTGAATGTGTAAGCAGACAAG 59.724 41.667 0.00 0.00 30.75 3.16
5999 6251 4.338400 GTGTAAGCAGACAAGTTTCCCTTT 59.662 41.667 0.00 0.00 0.00 3.11
6000 6252 4.953579 TGTAAGCAGACAAGTTTCCCTTTT 59.046 37.500 0.00 0.00 0.00 2.27
6001 6253 5.420739 TGTAAGCAGACAAGTTTCCCTTTTT 59.579 36.000 0.00 0.00 0.00 1.94
6009 6261 1.699083 AGTTTCCCTTTTTGCCCCATG 59.301 47.619 0.00 0.00 0.00 3.66
6028 6280 5.363580 CCCATGCATAAGTCAATTAAACCCT 59.636 40.000 0.00 0.00 0.00 4.34
6031 6283 6.909550 TGCATAAGTCAATTAAACCCTGTT 57.090 33.333 0.00 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 3.521529 GATGGGATCGGGTGGCTCG 62.522 68.421 0.00 0.00 0.00 5.03
2 3 2.427753 GATGGGATCGGGTGGCTC 59.572 66.667 0.00 0.00 0.00 4.70
86 90 2.123382 GAGAGTACGGGGAGGGGG 60.123 72.222 0.00 0.00 0.00 5.40
116 124 0.108472 GAACGAAACCGGTAGAGGGG 60.108 60.000 8.00 0.00 35.02 4.79
123 131 0.033781 TCGAATGGAACGAAACCGGT 59.966 50.000 0.00 0.00 36.84 5.28
226 248 6.129273 CGAGTAGAATTCGAACTTCAAAACGA 60.129 38.462 15.05 0.00 40.36 3.85
227 249 6.001725 CGAGTAGAATTCGAACTTCAAAACG 58.998 40.000 15.05 10.30 40.36 3.60
232 254 5.366829 TCACGAGTAGAATTCGAACTTCA 57.633 39.130 15.05 6.06 40.36 3.02
235 257 3.440872 AGCTCACGAGTAGAATTCGAACT 59.559 43.478 14.14 14.14 40.36 3.01
280 302 2.964925 AACAGAAACGCGCGCAGA 60.965 55.556 32.58 0.00 0.00 4.26
282 304 4.306471 CCAACAGAAACGCGCGCA 62.306 61.111 32.58 0.00 0.00 6.09
304 340 2.761213 CAATTCCCCCAGCCAGCC 60.761 66.667 0.00 0.00 0.00 4.85
306 342 1.079073 AACCAATTCCCCCAGCCAG 59.921 57.895 0.00 0.00 0.00 4.85
307 343 1.229145 CAACCAATTCCCCCAGCCA 60.229 57.895 0.00 0.00 0.00 4.75
310 346 1.780503 GATCCAACCAATTCCCCCAG 58.219 55.000 0.00 0.00 0.00 4.45
311 347 0.033601 CGATCCAACCAATTCCCCCA 60.034 55.000 0.00 0.00 0.00 4.96
312 348 0.257616 TCGATCCAACCAATTCCCCC 59.742 55.000 0.00 0.00 0.00 5.40
313 349 1.680338 CTCGATCCAACCAATTCCCC 58.320 55.000 0.00 0.00 0.00 4.81
316 352 1.594862 CGAGCTCGATCCAACCAATTC 59.405 52.381 32.06 0.00 43.02 2.17
317 353 1.066143 ACGAGCTCGATCCAACCAATT 60.066 47.619 40.58 12.43 43.02 2.32
318 354 0.537188 ACGAGCTCGATCCAACCAAT 59.463 50.000 40.58 13.00 43.02 3.16
319 355 1.179152 TACGAGCTCGATCCAACCAA 58.821 50.000 40.58 11.98 43.02 3.67
320 356 1.179152 TTACGAGCTCGATCCAACCA 58.821 50.000 40.58 12.74 43.02 3.67
321 357 2.128035 CATTACGAGCTCGATCCAACC 58.872 52.381 40.58 0.00 43.02 3.77
322 358 1.523095 GCATTACGAGCTCGATCCAAC 59.477 52.381 40.58 20.91 43.02 3.77
587 635 1.202200 CGACCCAACGAAAGCAAAACA 60.202 47.619 0.00 0.00 35.09 2.83
612 664 1.198637 GATTCAGATATGGCAAGCGGC 59.801 52.381 0.00 0.00 43.74 6.53
686 738 1.153745 CACCTGACGGCTGCTCTAC 60.154 63.158 0.00 0.00 0.00 2.59
781 844 8.568794 CACTGATGCAAGAGATCATGATTAATT 58.431 33.333 10.14 2.23 0.00 1.40
809 957 1.411246 AGAACACACGAGGTAAGCACA 59.589 47.619 0.00 0.00 0.00 4.57
825 973 2.379005 CCCTTCCCCTGCATTTAGAAC 58.621 52.381 0.00 0.00 0.00 3.01
828 976 0.631212 ACCCCTTCCCCTGCATTTAG 59.369 55.000 0.00 0.00 0.00 1.85
865 1017 0.706433 ACCAGGGCCTGATGAAATGT 59.294 50.000 34.84 18.58 32.44 2.71
962 1114 1.592223 CCCCACTGTCGAACTCTCC 59.408 63.158 0.00 0.00 0.00 3.71
963 1115 1.592223 CCCCCACTGTCGAACTCTC 59.408 63.158 0.00 0.00 0.00 3.20
1066 1218 2.355837 GACGCAGACGAGGCACAA 60.356 61.111 0.00 0.00 43.93 3.33
1284 1436 3.821033 AGCCAGGTGTCAAGAACATAAAC 59.179 43.478 0.00 0.00 40.80 2.01
1387 1539 1.553706 TTCAAGGACGGAGGGAGTAC 58.446 55.000 0.00 0.00 0.00 2.73
1388 1540 2.176889 CTTTCAAGGACGGAGGGAGTA 58.823 52.381 0.00 0.00 0.00 2.59
1389 1541 0.977395 CTTTCAAGGACGGAGGGAGT 59.023 55.000 0.00 0.00 0.00 3.85
1390 1542 1.205893 CTCTTTCAAGGACGGAGGGAG 59.794 57.143 0.00 0.00 0.00 4.30
1391 1543 1.267121 CTCTTTCAAGGACGGAGGGA 58.733 55.000 0.00 0.00 0.00 4.20
1392 1544 0.977395 ACTCTTTCAAGGACGGAGGG 59.023 55.000 0.00 0.00 0.00 4.30
1393 1545 1.344763 ACACTCTTTCAAGGACGGAGG 59.655 52.381 0.00 0.00 0.00 4.30
1394 1546 2.821991 ACACTCTTTCAAGGACGGAG 57.178 50.000 0.00 0.00 0.00 4.63
1395 1547 2.698797 AGAACACTCTTTCAAGGACGGA 59.301 45.455 0.00 0.00 0.00 4.69
1396 1548 3.113260 AGAACACTCTTTCAAGGACGG 57.887 47.619 0.00 0.00 0.00 4.79
1397 1549 4.372656 AGAAGAACACTCTTTCAAGGACG 58.627 43.478 0.00 0.00 42.19 4.79
1398 1550 6.987404 AGTTAGAAGAACACTCTTTCAAGGAC 59.013 38.462 0.00 0.00 42.19 3.85
1399 1551 7.125792 AGTTAGAAGAACACTCTTTCAAGGA 57.874 36.000 0.00 0.00 42.19 3.36
1400 1552 7.793927 AAGTTAGAAGAACACTCTTTCAAGG 57.206 36.000 0.00 0.00 42.19 3.61
1401 1553 8.669243 ACAAAGTTAGAAGAACACTCTTTCAAG 58.331 33.333 0.00 0.00 42.19 3.02
1402 1554 8.561738 ACAAAGTTAGAAGAACACTCTTTCAA 57.438 30.769 0.00 0.00 42.19 2.69
1403 1555 8.450964 CAACAAAGTTAGAAGAACACTCTTTCA 58.549 33.333 0.00 0.00 42.19 2.69
1404 1556 7.910683 CCAACAAAGTTAGAAGAACACTCTTTC 59.089 37.037 0.00 0.00 42.19 2.62
1405 1557 7.610305 TCCAACAAAGTTAGAAGAACACTCTTT 59.390 33.333 0.00 0.00 42.19 2.52
1406 1558 7.110155 TCCAACAAAGTTAGAAGAACACTCTT 58.890 34.615 0.00 0.00 44.93 2.85
1407 1559 6.650120 TCCAACAAAGTTAGAAGAACACTCT 58.350 36.000 0.00 0.00 0.00 3.24
1408 1560 6.920569 TCCAACAAAGTTAGAAGAACACTC 57.079 37.500 0.00 0.00 0.00 3.51
1409 1561 7.393515 ACTTTCCAACAAAGTTAGAAGAACACT 59.606 33.333 0.00 0.00 37.18 3.55
1410 1562 7.535997 ACTTTCCAACAAAGTTAGAAGAACAC 58.464 34.615 0.00 0.00 37.18 3.32
1411 1563 7.392113 TGACTTTCCAACAAAGTTAGAAGAACA 59.608 33.333 1.44 0.00 40.27 3.18
1412 1564 7.758495 TGACTTTCCAACAAAGTTAGAAGAAC 58.242 34.615 1.44 0.00 40.27 3.01
1413 1565 7.931578 TGACTTTCCAACAAAGTTAGAAGAA 57.068 32.000 1.44 0.00 40.27 2.52
1414 1566 7.931578 TTGACTTTCCAACAAAGTTAGAAGA 57.068 32.000 1.44 0.00 40.27 2.87
1415 1567 8.624776 AGATTGACTTTCCAACAAAGTTAGAAG 58.375 33.333 1.44 0.00 40.27 2.85
1416 1568 8.519799 AGATTGACTTTCCAACAAAGTTAGAA 57.480 30.769 1.44 0.00 40.27 2.10
1417 1569 8.519799 AAGATTGACTTTCCAACAAAGTTAGA 57.480 30.769 1.44 0.00 40.27 2.10
1418 1570 9.586435 AAAAGATTGACTTTCCAACAAAGTTAG 57.414 29.630 1.44 0.00 46.55 2.34
1419 1571 9.936759 AAAAAGATTGACTTTCCAACAAAGTTA 57.063 25.926 1.44 0.00 46.55 2.24
1420 1572 8.846943 AAAAAGATTGACTTTCCAACAAAGTT 57.153 26.923 1.44 0.00 46.55 2.66
1448 1600 9.619316 GCATTATTGTGTAAATACAGTCAAACA 57.381 29.630 0.00 0.00 36.78 2.83
1449 1601 9.619316 TGCATTATTGTGTAAATACAGTCAAAC 57.381 29.630 0.00 0.00 36.78 2.93
1450 1602 9.619316 GTGCATTATTGTGTAAATACAGTCAAA 57.381 29.630 0.00 0.00 36.78 2.69
1451 1603 8.240682 GGTGCATTATTGTGTAAATACAGTCAA 58.759 33.333 0.00 0.00 36.78 3.18
1452 1604 7.391833 TGGTGCATTATTGTGTAAATACAGTCA 59.608 33.333 0.00 0.00 36.78 3.41
1453 1605 7.757526 TGGTGCATTATTGTGTAAATACAGTC 58.242 34.615 0.00 0.00 36.78 3.51
1454 1606 7.695480 TGGTGCATTATTGTGTAAATACAGT 57.305 32.000 0.00 0.00 36.78 3.55
1455 1607 8.026026 TGTTGGTGCATTATTGTGTAAATACAG 58.974 33.333 0.00 0.00 36.78 2.74
1456 1608 7.886338 TGTTGGTGCATTATTGTGTAAATACA 58.114 30.769 0.00 0.00 0.00 2.29
1457 1609 8.925161 ATGTTGGTGCATTATTGTGTAAATAC 57.075 30.769 0.00 0.00 0.00 1.89
1458 1610 9.935241 AAATGTTGGTGCATTATTGTGTAAATA 57.065 25.926 0.00 0.00 38.03 1.40
1459 1611 8.845413 AAATGTTGGTGCATTATTGTGTAAAT 57.155 26.923 0.00 0.00 38.03 1.40
1460 1612 9.935241 ATAAATGTTGGTGCATTATTGTGTAAA 57.065 25.926 0.00 0.00 38.03 2.01
1461 1613 9.363763 CATAAATGTTGGTGCATTATTGTGTAA 57.636 29.630 0.00 0.00 38.03 2.41
1462 1614 7.490725 GCATAAATGTTGGTGCATTATTGTGTA 59.509 33.333 0.00 0.00 38.03 2.90
1463 1615 6.313411 GCATAAATGTTGGTGCATTATTGTGT 59.687 34.615 0.00 0.00 38.03 3.72
1464 1616 6.238157 GGCATAAATGTTGGTGCATTATTGTG 60.238 38.462 0.00 0.00 38.03 3.33
1465 1617 5.816777 GGCATAAATGTTGGTGCATTATTGT 59.183 36.000 0.00 0.00 38.03 2.71
1466 1618 5.816258 TGGCATAAATGTTGGTGCATTATTG 59.184 36.000 0.00 0.00 38.03 1.90
1467 1619 5.987098 TGGCATAAATGTTGGTGCATTATT 58.013 33.333 0.00 0.00 38.03 1.40
1468 1620 5.611128 TGGCATAAATGTTGGTGCATTAT 57.389 34.783 0.00 0.00 38.03 1.28
1469 1621 5.128335 TGATGGCATAAATGTTGGTGCATTA 59.872 36.000 0.00 0.00 38.03 1.90
1470 1622 3.977134 TGGCATAAATGTTGGTGCATT 57.023 38.095 0.00 0.00 40.43 3.56
1471 1623 3.451540 TGATGGCATAAATGTTGGTGCAT 59.548 39.130 0.00 0.00 39.27 3.96
1472 1624 2.830321 TGATGGCATAAATGTTGGTGCA 59.170 40.909 0.00 0.00 39.27 4.57
1473 1625 3.523606 TGATGGCATAAATGTTGGTGC 57.476 42.857 0.00 0.00 36.88 5.01
1474 1626 6.988622 AATTTGATGGCATAAATGTTGGTG 57.011 33.333 0.00 0.00 0.00 4.17
1475 1627 7.850193 ACTAATTTGATGGCATAAATGTTGGT 58.150 30.769 0.00 3.42 0.00 3.67
1476 1628 9.467258 CTACTAATTTGATGGCATAAATGTTGG 57.533 33.333 0.00 2.80 0.00 3.77
1477 1629 8.971321 GCTACTAATTTGATGGCATAAATGTTG 58.029 33.333 0.00 5.40 0.00 3.33
1478 1630 8.694540 TGCTACTAATTTGATGGCATAAATGTT 58.305 29.630 0.00 0.57 0.00 2.71
1479 1631 8.236585 TGCTACTAATTTGATGGCATAAATGT 57.763 30.769 0.00 5.58 0.00 2.71
1480 1632 9.701098 AATGCTACTAATTTGATGGCATAAATG 57.299 29.630 0.00 0.32 37.85 2.32
1483 1635 9.791801 TCTAATGCTACTAATTTGATGGCATAA 57.208 29.630 0.00 0.00 37.85 1.90
1484 1636 9.964354 ATCTAATGCTACTAATTTGATGGCATA 57.036 29.630 0.00 0.00 37.85 3.14
1485 1637 8.874744 ATCTAATGCTACTAATTTGATGGCAT 57.125 30.769 0.00 0.00 40.04 4.40
1486 1638 8.696043 AATCTAATGCTACTAATTTGATGGCA 57.304 30.769 0.00 0.00 32.33 4.92
1487 1639 8.786898 TGAATCTAATGCTACTAATTTGATGGC 58.213 33.333 0.00 0.00 32.33 4.40
1539 1691 9.874205 ATATCATTGTTTGTGAAACCAAATAGG 57.126 29.630 0.00 0.00 40.67 2.57
1549 1701 9.571810 GTGCAGAAATATATCATTGTTTGTGAA 57.428 29.630 0.00 0.00 29.38 3.18
1550 1702 8.738106 TGTGCAGAAATATATCATTGTTTGTGA 58.262 29.630 0.00 0.00 29.38 3.58
1551 1703 8.914328 TGTGCAGAAATATATCATTGTTTGTG 57.086 30.769 0.00 0.00 0.00 3.33
1552 1704 9.926158 TTTGTGCAGAAATATATCATTGTTTGT 57.074 25.926 4.66 0.00 0.00 2.83
1555 1707 9.793252 GAGTTTGTGCAGAAATATATCATTGTT 57.207 29.630 12.62 0.00 0.00 2.83
1556 1708 8.124823 CGAGTTTGTGCAGAAATATATCATTGT 58.875 33.333 12.62 0.00 0.00 2.71
1557 1709 7.588854 CCGAGTTTGTGCAGAAATATATCATTG 59.411 37.037 12.62 0.00 0.00 2.82
1558 1710 7.642669 CCGAGTTTGTGCAGAAATATATCATT 58.357 34.615 12.62 0.00 0.00 2.57
1559 1711 6.293626 GCCGAGTTTGTGCAGAAATATATCAT 60.294 38.462 12.62 0.00 0.00 2.45
1560 1712 5.007626 GCCGAGTTTGTGCAGAAATATATCA 59.992 40.000 12.62 0.00 0.00 2.15
1561 1713 5.444122 GCCGAGTTTGTGCAGAAATATATC 58.556 41.667 12.62 7.76 0.00 1.63
1562 1714 4.275936 GGCCGAGTTTGTGCAGAAATATAT 59.724 41.667 12.62 0.00 0.00 0.86
1563 1715 3.625764 GGCCGAGTTTGTGCAGAAATATA 59.374 43.478 12.62 0.00 0.00 0.86
1564 1716 2.423538 GGCCGAGTTTGTGCAGAAATAT 59.576 45.455 12.62 4.56 0.00 1.28
1565 1717 1.810151 GGCCGAGTTTGTGCAGAAATA 59.190 47.619 12.62 0.00 0.00 1.40
1566 1718 0.598065 GGCCGAGTTTGTGCAGAAAT 59.402 50.000 12.62 1.90 0.00 2.17
1567 1719 0.749818 TGGCCGAGTTTGTGCAGAAA 60.750 50.000 4.66 4.66 0.00 2.52
1568 1720 0.749818 TTGGCCGAGTTTGTGCAGAA 60.750 50.000 0.00 0.00 0.00 3.02
1569 1721 0.749818 TTTGGCCGAGTTTGTGCAGA 60.750 50.000 0.00 0.00 0.00 4.26
1570 1722 0.594796 GTTTGGCCGAGTTTGTGCAG 60.595 55.000 0.00 0.00 0.00 4.41
1571 1723 1.034838 AGTTTGGCCGAGTTTGTGCA 61.035 50.000 0.00 0.00 0.00 4.57
1572 1724 0.102300 AAGTTTGGCCGAGTTTGTGC 59.898 50.000 0.00 0.00 0.00 4.57
1573 1725 2.159310 TCAAAGTTTGGCCGAGTTTGTG 60.159 45.455 26.04 12.51 38.17 3.33
1574 1726 2.096248 TCAAAGTTTGGCCGAGTTTGT 58.904 42.857 26.04 3.15 38.17 2.83
1575 1727 2.357637 TCTCAAAGTTTGGCCGAGTTTG 59.642 45.455 23.43 23.43 38.28 2.93
1576 1728 2.650322 TCTCAAAGTTTGGCCGAGTTT 58.350 42.857 15.47 1.79 0.00 2.66
1577 1729 2.341846 TCTCAAAGTTTGGCCGAGTT 57.658 45.000 15.47 0.00 0.00 3.01
1578 1730 2.568623 ATCTCAAAGTTTGGCCGAGT 57.431 45.000 15.47 0.00 0.00 4.18
1579 1731 3.600388 ACTATCTCAAAGTTTGGCCGAG 58.400 45.455 15.47 10.38 0.00 4.63
1580 1732 3.695830 ACTATCTCAAAGTTTGGCCGA 57.304 42.857 15.47 9.98 0.00 5.54
1581 1733 4.766404 AAACTATCTCAAAGTTTGGCCG 57.234 40.909 15.47 5.17 43.66 6.13
1586 1738 6.004574 GGAGGGTCAAACTATCTCAAAGTTT 58.995 40.000 0.00 0.00 45.64 2.66
1587 1739 5.073144 TGGAGGGTCAAACTATCTCAAAGTT 59.927 40.000 0.00 0.00 38.82 2.66
1588 1740 4.597507 TGGAGGGTCAAACTATCTCAAAGT 59.402 41.667 0.00 0.00 0.00 2.66
1589 1741 5.165961 TGGAGGGTCAAACTATCTCAAAG 57.834 43.478 0.00 0.00 0.00 2.77
1590 1742 5.163141 TGTTGGAGGGTCAAACTATCTCAAA 60.163 40.000 0.00 0.00 0.00 2.69
1591 1743 4.349636 TGTTGGAGGGTCAAACTATCTCAA 59.650 41.667 0.00 0.00 0.00 3.02
1592 1744 3.907474 TGTTGGAGGGTCAAACTATCTCA 59.093 43.478 0.00 0.00 0.00 3.27
1593 1745 4.553330 TGTTGGAGGGTCAAACTATCTC 57.447 45.455 0.00 0.00 0.00 2.75
1594 1746 4.993705 TTGTTGGAGGGTCAAACTATCT 57.006 40.909 0.00 0.00 0.00 1.98
1595 1747 5.070685 ACTTTGTTGGAGGGTCAAACTATC 58.929 41.667 0.00 0.00 0.00 2.08
1596 1748 5.061721 ACTTTGTTGGAGGGTCAAACTAT 57.938 39.130 0.00 0.00 0.00 2.12
1597 1749 4.513406 ACTTTGTTGGAGGGTCAAACTA 57.487 40.909 0.00 0.00 0.00 2.24
1598 1750 3.382083 ACTTTGTTGGAGGGTCAAACT 57.618 42.857 0.00 0.00 0.00 2.66
1599 1751 3.430236 CCAACTTTGTTGGAGGGTCAAAC 60.430 47.826 21.06 0.00 42.06 2.93
1600 1752 2.763448 CCAACTTTGTTGGAGGGTCAAA 59.237 45.455 21.06 0.00 42.06 2.69
1601 1753 2.024846 TCCAACTTTGTTGGAGGGTCAA 60.025 45.455 23.38 4.76 43.17 3.18
1602 1754 1.566703 TCCAACTTTGTTGGAGGGTCA 59.433 47.619 23.38 5.39 43.17 4.02
1603 1755 2.358322 TCCAACTTTGTTGGAGGGTC 57.642 50.000 23.38 0.00 43.17 4.46
1608 1760 4.850680 AGTGTACTTCCAACTTTGTTGGA 58.149 39.130 23.38 23.38 46.08 3.53
1609 1761 4.881850 AGAGTGTACTTCCAACTTTGTTGG 59.118 41.667 19.97 19.97 40.87 3.77
1610 1762 6.436843 AAGAGTGTACTTCCAACTTTGTTG 57.563 37.500 3.69 3.69 0.00 3.33
1611 1763 6.657541 TGAAAGAGTGTACTTCCAACTTTGTT 59.342 34.615 0.00 0.00 0.00 2.83
1612 1764 6.177610 TGAAAGAGTGTACTTCCAACTTTGT 58.822 36.000 0.00 0.00 0.00 2.83
1613 1765 6.677781 TGAAAGAGTGTACTTCCAACTTTG 57.322 37.500 0.00 0.00 0.00 2.77
1614 1766 6.318900 CCTTGAAAGAGTGTACTTCCAACTTT 59.681 38.462 0.00 0.00 0.00 2.66
1615 1767 5.823045 CCTTGAAAGAGTGTACTTCCAACTT 59.177 40.000 0.00 0.00 0.00 2.66
1616 1768 5.130477 TCCTTGAAAGAGTGTACTTCCAACT 59.870 40.000 0.00 0.00 0.00 3.16
1617 1769 5.236695 GTCCTTGAAAGAGTGTACTTCCAAC 59.763 44.000 0.00 0.00 0.00 3.77
1618 1770 5.365619 GTCCTTGAAAGAGTGTACTTCCAA 58.634 41.667 0.00 0.00 0.00 3.53
1619 1771 4.500887 CGTCCTTGAAAGAGTGTACTTCCA 60.501 45.833 0.00 0.00 0.00 3.53
1620 1772 3.988517 CGTCCTTGAAAGAGTGTACTTCC 59.011 47.826 0.00 0.00 0.00 3.46
1621 1773 3.988517 CCGTCCTTGAAAGAGTGTACTTC 59.011 47.826 0.00 0.00 0.00 3.01
1622 1774 3.640029 TCCGTCCTTGAAAGAGTGTACTT 59.360 43.478 0.00 0.00 0.00 2.24
1623 1775 3.228453 TCCGTCCTTGAAAGAGTGTACT 58.772 45.455 0.00 0.00 0.00 2.73
1624 1776 3.655276 TCCGTCCTTGAAAGAGTGTAC 57.345 47.619 0.00 0.00 0.00 2.90
1625 1777 3.006537 CCTTCCGTCCTTGAAAGAGTGTA 59.993 47.826 0.00 0.00 0.00 2.90
1626 1778 2.224305 CCTTCCGTCCTTGAAAGAGTGT 60.224 50.000 0.00 0.00 0.00 3.55
1627 1779 2.037251 TCCTTCCGTCCTTGAAAGAGTG 59.963 50.000 0.00 0.00 0.00 3.51
1628 1780 2.300437 CTCCTTCCGTCCTTGAAAGAGT 59.700 50.000 0.00 0.00 29.56 3.24
1629 1781 2.300437 ACTCCTTCCGTCCTTGAAAGAG 59.700 50.000 0.00 0.00 36.69 2.85
1630 1782 2.326428 ACTCCTTCCGTCCTTGAAAGA 58.674 47.619 0.00 0.00 0.00 2.52
1631 1783 2.841442 ACTCCTTCCGTCCTTGAAAG 57.159 50.000 0.00 0.00 0.00 2.62
1632 1784 5.021458 ACTATACTCCTTCCGTCCTTGAAA 58.979 41.667 0.00 0.00 0.00 2.69
1633 1785 4.607239 ACTATACTCCTTCCGTCCTTGAA 58.393 43.478 0.00 0.00 0.00 2.69
1634 1786 4.246712 ACTATACTCCTTCCGTCCTTGA 57.753 45.455 0.00 0.00 0.00 3.02
1635 1787 4.401519 TGAACTATACTCCTTCCGTCCTTG 59.598 45.833 0.00 0.00 0.00 3.61
1636 1788 4.607239 TGAACTATACTCCTTCCGTCCTT 58.393 43.478 0.00 0.00 0.00 3.36
1637 1789 4.246712 TGAACTATACTCCTTCCGTCCT 57.753 45.455 0.00 0.00 0.00 3.85
1638 1790 5.532664 AATGAACTATACTCCTTCCGTCC 57.467 43.478 0.00 0.00 0.00 4.79
1639 1791 7.652507 CCTTAAATGAACTATACTCCTTCCGTC 59.347 40.741 0.00 0.00 0.00 4.79
1640 1792 7.125356 ACCTTAAATGAACTATACTCCTTCCGT 59.875 37.037 0.00 0.00 0.00 4.69
1641 1793 7.498443 ACCTTAAATGAACTATACTCCTTCCG 58.502 38.462 0.00 0.00 0.00 4.30
1642 1794 9.682465 AAACCTTAAATGAACTATACTCCTTCC 57.318 33.333 0.00 0.00 0.00 3.46
1669 1821 7.115378 GCACCATCAGTTAATGAAAACTCAAAG 59.885 37.037 0.00 0.00 42.53 2.77
1674 1826 4.832266 TGGCACCATCAGTTAATGAAAACT 59.168 37.500 0.00 0.00 42.53 2.66
1679 1831 3.244875 ACACTGGCACCATCAGTTAATGA 60.245 43.478 0.00 0.00 42.87 2.57
1680 1832 3.084039 ACACTGGCACCATCAGTTAATG 58.916 45.455 0.00 0.00 42.87 1.90
1681 1833 3.439857 ACACTGGCACCATCAGTTAAT 57.560 42.857 0.00 0.00 42.87 1.40
1731 1883 4.072131 TCAGCAACCCAAATAGTTGTCTC 58.928 43.478 1.80 0.00 45.14 3.36
1933 2085 6.942576 AGGCACAAGATTATAGTCAAAAGTGT 59.057 34.615 0.00 0.00 0.00 3.55
1955 2107 2.173569 AGATGGTTAGGAACATGGAGGC 59.826 50.000 0.00 0.00 0.00 4.70
1964 2116 3.776969 AGACATGCAGAGATGGTTAGGAA 59.223 43.478 0.00 0.00 0.00 3.36
1966 2118 3.834489 AGACATGCAGAGATGGTTAGG 57.166 47.619 0.00 0.00 0.00 2.69
2047 2215 1.069204 CCCTCATGACCCTGTGTATCG 59.931 57.143 0.00 0.00 0.00 2.92
2187 2355 6.412362 TGTAAAACACCCATGCAAACTTAT 57.588 33.333 0.00 0.00 0.00 1.73
2358 2526 8.684386 TGGAGTGAACATACTAATGAAAACAA 57.316 30.769 0.00 0.00 36.54 2.83
2370 2538 4.508662 CTCCTTCCTTGGAGTGAACATAC 58.491 47.826 2.62 0.00 46.33 2.39
2503 2671 4.065321 CTGGCCTTCAGGATACAAGTAG 57.935 50.000 3.32 0.00 39.76 2.57
2516 2684 5.293560 GTCATGATACTAAGACTGGCCTTC 58.706 45.833 3.32 0.00 0.00 3.46
2699 2867 9.295825 ACATACTCTATTCAATTTTGACAACCA 57.704 29.630 0.00 0.00 36.83 3.67
2710 2878 9.429359 GCATAGCAAGTACATACTCTATTCAAT 57.571 33.333 0.00 0.00 34.99 2.57
2711 2879 8.421002 TGCATAGCAAGTACATACTCTATTCAA 58.579 33.333 0.00 0.00 34.76 2.69
2712 2880 7.951591 TGCATAGCAAGTACATACTCTATTCA 58.048 34.615 0.00 0.00 34.76 2.57
2713 2881 7.543868 CCTGCATAGCAAGTACATACTCTATTC 59.456 40.741 0.00 0.00 38.41 1.75
2714 2882 7.015682 ACCTGCATAGCAAGTACATACTCTATT 59.984 37.037 0.00 0.00 38.41 1.73
2715 2883 6.495181 ACCTGCATAGCAAGTACATACTCTAT 59.505 38.462 0.00 0.00 38.41 1.98
2716 2884 5.833667 ACCTGCATAGCAAGTACATACTCTA 59.166 40.000 0.00 0.00 38.41 2.43
2717 2885 4.651503 ACCTGCATAGCAAGTACATACTCT 59.348 41.667 0.00 0.00 38.41 3.24
2718 2886 4.950050 ACCTGCATAGCAAGTACATACTC 58.050 43.478 0.00 0.00 38.41 2.59
2719 2887 5.118990 CAACCTGCATAGCAAGTACATACT 58.881 41.667 0.00 0.00 38.41 2.12
2720 2888 4.876107 ACAACCTGCATAGCAAGTACATAC 59.124 41.667 0.00 0.00 38.41 2.39
2721 2889 5.097742 ACAACCTGCATAGCAAGTACATA 57.902 39.130 0.00 0.00 38.41 2.29
2722 2890 3.955471 ACAACCTGCATAGCAAGTACAT 58.045 40.909 0.00 0.00 38.41 2.29
2723 2891 3.417069 ACAACCTGCATAGCAAGTACA 57.583 42.857 0.00 0.00 38.41 2.90
2724 2892 4.273480 CCATACAACCTGCATAGCAAGTAC 59.727 45.833 0.00 0.00 38.41 2.73
2916 3112 3.807631 AAGCGGAACACAGCTGCGA 62.808 57.895 15.27 0.00 43.78 5.10
2917 3113 3.300667 GAAGCGGAACACAGCTGCG 62.301 63.158 15.27 6.98 43.78 5.18
2943 3139 7.385205 CCCATCAGGTAATTAAAGACATAGTCG 59.615 40.741 0.00 0.00 37.67 4.18
2949 3145 6.785076 TGTTCCCATCAGGTAATTAAAGACA 58.215 36.000 0.00 0.00 36.75 3.41
3300 3502 8.277713 ACTAATACACGTCACAATAACAACAAC 58.722 33.333 0.00 0.00 0.00 3.32
3304 3506 7.799447 GCAAACTAATACACGTCACAATAACAA 59.201 33.333 0.00 0.00 0.00 2.83
3309 3511 6.183360 GCTAGCAAACTAATACACGTCACAAT 60.183 38.462 10.63 0.00 0.00 2.71
3312 3514 4.863131 AGCTAGCAAACTAATACACGTCAC 59.137 41.667 18.83 0.00 0.00 3.67
3314 3516 7.695869 ATAAGCTAGCAAACTAATACACGTC 57.304 36.000 18.83 0.00 0.00 4.34
3315 3517 9.760077 AATATAAGCTAGCAAACTAATACACGT 57.240 29.630 18.83 0.00 0.00 4.49
3323 3528 6.267014 ACGGAGGAATATAAGCTAGCAAACTA 59.733 38.462 18.83 2.93 0.00 2.24
3334 3539 7.518370 CGTGAATTTGGAACGGAGGAATATAAG 60.518 40.741 0.00 0.00 33.77 1.73
3346 3552 3.666797 GGTTAAAGCGTGAATTTGGAACG 59.333 43.478 0.00 0.00 40.22 3.95
3359 3565 4.320491 CGAGTTAATCGTTGGTTAAAGCG 58.680 43.478 0.00 0.00 46.62 4.68
3403 3609 4.278419 CGATGATGTCTATGTGGTCTACCA 59.722 45.833 0.00 0.00 45.30 3.25
3404 3610 4.321304 CCGATGATGTCTATGTGGTCTACC 60.321 50.000 0.00 0.00 0.00 3.18
3405 3611 4.278669 ACCGATGATGTCTATGTGGTCTAC 59.721 45.833 0.00 0.00 0.00 2.59
3406 3612 4.470602 ACCGATGATGTCTATGTGGTCTA 58.529 43.478 0.00 0.00 0.00 2.59
3407 3613 3.300388 ACCGATGATGTCTATGTGGTCT 58.700 45.455 0.00 0.00 0.00 3.85
3408 3614 3.735237 ACCGATGATGTCTATGTGGTC 57.265 47.619 0.00 0.00 0.00 4.02
3409 3615 3.706594 AGAACCGATGATGTCTATGTGGT 59.293 43.478 0.00 0.00 0.00 4.16
3410 3616 4.053983 CAGAACCGATGATGTCTATGTGG 58.946 47.826 0.00 0.00 0.00 4.17
3411 3617 4.686972 ACAGAACCGATGATGTCTATGTG 58.313 43.478 0.00 0.00 0.00 3.21
3421 3627 5.000591 TGCTTTTGAATACAGAACCGATGA 58.999 37.500 0.00 0.00 0.00 2.92
3426 3632 6.503524 TGAAAGTGCTTTTGAATACAGAACC 58.496 36.000 0.00 0.00 32.11 3.62
3436 3642 7.534282 TCGCAATAATATGAAAGTGCTTTTGA 58.466 30.769 0.00 0.00 32.11 2.69
3454 3660 5.650266 AGGTGTGGTTATGAAAATCGCAATA 59.350 36.000 0.00 0.00 0.00 1.90
3459 3665 5.371115 ACAAGGTGTGGTTATGAAAATCG 57.629 39.130 0.00 0.00 0.00 3.34
3462 3668 8.696374 TCAAAATACAAGGTGTGGTTATGAAAA 58.304 29.630 0.00 0.00 0.00 2.29
3475 3681 6.777580 ACTGTCTCCATTTCAAAATACAAGGT 59.222 34.615 0.00 0.00 0.00 3.50
3494 3700 4.954826 GGACCCACAAGTACTATACTGTCT 59.045 45.833 0.00 0.00 39.39 3.41
3496 3702 4.465305 GTGGACCCACAAGTACTATACTGT 59.535 45.833 13.92 0.00 45.53 3.55
3497 3703 5.007385 GTGGACCCACAAGTACTATACTG 57.993 47.826 13.92 0.00 45.53 2.74
3554 3760 6.549736 AGTTAGCTTTGTACCATGGAAAAACT 59.450 34.615 21.47 17.02 0.00 2.66
3561 3767 4.156008 GGACAAGTTAGCTTTGTACCATGG 59.844 45.833 11.19 11.19 31.49 3.66
3569 3775 5.385617 CGATTTCTGGACAAGTTAGCTTTG 58.614 41.667 0.00 0.00 31.49 2.77
3576 3782 6.001460 TCAATAACCGATTTCTGGACAAGTT 58.999 36.000 0.00 0.00 0.00 2.66
3583 3789 7.210174 TCTGATACTCAATAACCGATTTCTGG 58.790 38.462 0.00 0.00 0.00 3.86
3586 3792 9.482627 AGATTCTGATACTCAATAACCGATTTC 57.517 33.333 0.00 0.00 0.00 2.17
3614 3820 3.397482 ACACAAAGAGAGCATGTGAGAC 58.603 45.455 11.66 0.00 45.61 3.36
3631 3837 8.503196 CACTATAACAAGAGCAACAATTACACA 58.497 33.333 0.00 0.00 0.00 3.72
3632 3838 7.962918 CCACTATAACAAGAGCAACAATTACAC 59.037 37.037 0.00 0.00 0.00 2.90
3640 3846 5.154222 GCAAACCACTATAACAAGAGCAAC 58.846 41.667 0.00 0.00 0.00 4.17
3649 3855 4.095610 GCGTGATTGCAAACCACTATAAC 58.904 43.478 23.79 7.20 38.56 1.89
3661 3867 0.443478 CATGTCTTCGCGTGATTGCA 59.557 50.000 5.77 0.00 34.15 4.08
3685 3891 1.648467 GGTTGTCCGCCAGAATCAGC 61.648 60.000 0.00 0.00 0.00 4.26
3686 3892 0.036010 AGGTTGTCCGCCAGAATCAG 60.036 55.000 0.00 0.00 39.05 2.90
3753 3959 1.424638 ACATTATGGGACGGAGGGAG 58.575 55.000 0.00 0.00 0.00 4.30
3754 3960 2.779429 TACATTATGGGACGGAGGGA 57.221 50.000 0.00 0.00 0.00 4.20
3755 3961 2.969950 TCTTACATTATGGGACGGAGGG 59.030 50.000 0.00 0.00 0.00 4.30
3756 3962 3.552273 CGTCTTACATTATGGGACGGAGG 60.552 52.174 20.50 5.87 43.69 4.30
3757 3963 3.639538 CGTCTTACATTATGGGACGGAG 58.360 50.000 20.50 2.74 43.69 4.63
3758 3964 3.720949 CGTCTTACATTATGGGACGGA 57.279 47.619 20.50 2.30 43.69 4.69
3780 3986 7.284489 ACCAAAGATAGCAACTAGTGTGAAAAA 59.716 33.333 0.00 0.00 0.00 1.94
3781 3987 6.770785 ACCAAAGATAGCAACTAGTGTGAAAA 59.229 34.615 0.00 0.00 0.00 2.29
3782 3988 6.296026 ACCAAAGATAGCAACTAGTGTGAAA 58.704 36.000 0.00 0.00 0.00 2.69
3783 3989 5.865085 ACCAAAGATAGCAACTAGTGTGAA 58.135 37.500 0.00 0.00 0.00 3.18
3784 3990 5.483685 ACCAAAGATAGCAACTAGTGTGA 57.516 39.130 0.00 0.00 0.00 3.58
3785 3991 7.519002 GTTAACCAAAGATAGCAACTAGTGTG 58.481 38.462 0.00 0.00 0.00 3.82
3786 3992 6.367969 CGTTAACCAAAGATAGCAACTAGTGT 59.632 38.462 0.00 0.00 0.00 3.55
3787 3993 6.183360 CCGTTAACCAAAGATAGCAACTAGTG 60.183 42.308 0.00 0.00 0.00 2.74
3788 3994 5.873164 CCGTTAACCAAAGATAGCAACTAGT 59.127 40.000 0.00 0.00 0.00 2.57
3789 3995 6.103997 TCCGTTAACCAAAGATAGCAACTAG 58.896 40.000 0.00 0.00 0.00 2.57
3790 3996 6.040209 TCCGTTAACCAAAGATAGCAACTA 57.960 37.500 0.00 0.00 0.00 2.24
3791 3997 4.901868 TCCGTTAACCAAAGATAGCAACT 58.098 39.130 0.00 0.00 0.00 3.16
3792 3998 5.813080 ATCCGTTAACCAAAGATAGCAAC 57.187 39.130 0.00 0.00 0.00 4.17
3853 4059 6.775088 ACAGCGTTGAATACATCTAACAATG 58.225 36.000 6.16 0.00 0.00 2.82
3855 4061 9.758651 ATATACAGCGTTGAATACATCTAACAA 57.241 29.630 6.16 0.00 0.00 2.83
3940 4147 4.036852 GCCTATTTGCCAATCAGAGGTAAC 59.963 45.833 1.09 0.00 30.21 2.50
3984 4191 9.083422 TGATGTTTATGGAAGTGGTTATCAAAA 57.917 29.630 0.00 0.00 0.00 2.44
3986 4193 8.106462 TCTGATGTTTATGGAAGTGGTTATCAA 58.894 33.333 0.00 0.00 0.00 2.57
3987 4194 7.629157 TCTGATGTTTATGGAAGTGGTTATCA 58.371 34.615 0.00 0.00 0.00 2.15
3988 4195 8.506168 TTCTGATGTTTATGGAAGTGGTTATC 57.494 34.615 0.00 0.00 0.00 1.75
3989 4196 8.877864 TTTCTGATGTTTATGGAAGTGGTTAT 57.122 30.769 0.00 0.00 0.00 1.89
3990 4197 8.698973 TTTTCTGATGTTTATGGAAGTGGTTA 57.301 30.769 0.00 0.00 0.00 2.85
3991 4198 7.595819 TTTTCTGATGTTTATGGAAGTGGTT 57.404 32.000 0.00 0.00 0.00 3.67
3992 4199 7.451255 TGATTTTCTGATGTTTATGGAAGTGGT 59.549 33.333 0.00 0.00 0.00 4.16
3993 4200 7.829725 TGATTTTCTGATGTTTATGGAAGTGG 58.170 34.615 0.00 0.00 0.00 4.00
4008 4215 6.395426 AGAGTTTGCACATTGATTTTCTGA 57.605 33.333 0.00 0.00 0.00 3.27
4017 4224 3.745332 TGCGATAGAGTTTGCACATTG 57.255 42.857 0.00 0.00 39.76 2.82
4055 4270 8.244113 GCTTGTTAGAATATTTTACCTGTTGCT 58.756 33.333 0.00 0.00 0.00 3.91
4151 4366 3.935203 AGAATGACTACCGAACAAGCATG 59.065 43.478 0.00 0.00 0.00 4.06
4152 4367 4.207891 AGAATGACTACCGAACAAGCAT 57.792 40.909 0.00 0.00 0.00 3.79
4171 4386 4.982241 ATTGGTTGAGACTTCAGGAAGA 57.018 40.909 15.51 0.00 40.79 2.87
4172 4387 5.799213 AGTATTGGTTGAGACTTCAGGAAG 58.201 41.667 7.47 7.47 43.79 3.46
4207 4422 7.422878 AAAATGTCGGAGAAAACTAGAGAAC 57.577 36.000 0.00 0.00 39.69 3.01
4210 4425 7.410942 CGAGAAAAATGTCGGAGAAAACTAGAG 60.411 40.741 0.00 0.00 39.69 2.43
4237 4452 9.855021 ATAAATTACTTTCCAAAAATCGACCTG 57.145 29.630 0.00 0.00 0.00 4.00
4399 4618 7.223387 TGTTTCGTAGAAGGACTTGTTTAGTTC 59.777 37.037 0.00 0.00 45.90 3.01
4404 4623 6.053005 TGATGTTTCGTAGAAGGACTTGTTT 58.947 36.000 0.00 0.00 45.90 2.83
4465 4684 3.415212 CTCAGACCAATCCACATGTGTT 58.585 45.455 23.79 10.31 0.00 3.32
4574 4793 7.244886 TGTACAGATCATCTCAGGAAAGAAA 57.755 36.000 0.00 0.00 0.00 2.52
4789 5008 7.920160 AAATCAAAGGAAAAGTTTCTGCAAA 57.080 28.000 3.92 0.00 37.35 3.68
4791 5010 7.278424 CAGAAAATCAAAGGAAAAGTTTCTGCA 59.722 33.333 10.36 0.00 41.79 4.41
4792 5011 7.624661 CAGAAAATCAAAGGAAAAGTTTCTGC 58.375 34.615 10.36 0.00 41.79 4.26
4793 5012 7.493645 AGCAGAAAATCAAAGGAAAAGTTTCTG 59.506 33.333 15.99 15.99 46.74 3.02
4794 5013 7.559486 AGCAGAAAATCAAAGGAAAAGTTTCT 58.441 30.769 3.92 0.00 37.35 2.52
4795 5014 7.776933 AGCAGAAAATCAAAGGAAAAGTTTC 57.223 32.000 0.00 0.00 36.46 2.78
4796 5015 8.478066 ACTAGCAGAAAATCAAAGGAAAAGTTT 58.522 29.630 0.00 0.00 0.00 2.66
4797 5016 8.011844 ACTAGCAGAAAATCAAAGGAAAAGTT 57.988 30.769 0.00 0.00 0.00 2.66
4850 5069 4.922206 TGTAGCAGATCATTGGGAAAGTT 58.078 39.130 0.00 0.00 0.00 2.66
4860 5079 4.655649 TCCCATACAGTTGTAGCAGATCAT 59.344 41.667 0.00 0.00 33.52 2.45
5107 5326 8.728088 ATCGATTGACTTCACAATTTTTACAC 57.272 30.769 0.00 0.00 40.03 2.90
5268 5490 6.460953 GCAAAGGACTTGAAGGAAACATACAA 60.461 38.462 0.00 0.00 37.17 2.41
5282 5504 3.432890 GGGAGATAGAGGCAAAGGACTTG 60.433 52.174 0.00 0.00 38.15 3.16
5291 5513 0.485099 GGGAGAGGGAGATAGAGGCA 59.515 60.000 0.00 0.00 0.00 4.75
5298 5520 5.137776 AGAGATTAAAGAGGGAGAGGGAGAT 59.862 44.000 0.00 0.00 0.00 2.75
5299 5521 4.484270 AGAGATTAAAGAGGGAGAGGGAGA 59.516 45.833 0.00 0.00 0.00 3.71
5300 5522 4.588528 CAGAGATTAAAGAGGGAGAGGGAG 59.411 50.000 0.00 0.00 0.00 4.30
5301 5523 4.016105 ACAGAGATTAAAGAGGGAGAGGGA 60.016 45.833 0.00 0.00 0.00 4.20
5302 5524 4.294347 ACAGAGATTAAAGAGGGAGAGGG 58.706 47.826 0.00 0.00 0.00 4.30
5303 5525 4.343814 GGACAGAGATTAAAGAGGGAGAGG 59.656 50.000 0.00 0.00 0.00 3.69
5417 5647 6.542821 TGTGGTACTTCTCAATCATTTCCTT 58.457 36.000 0.00 0.00 0.00 3.36
5418 5648 6.126863 TGTGGTACTTCTCAATCATTTCCT 57.873 37.500 0.00 0.00 0.00 3.36
5419 5649 8.682936 ATATGTGGTACTTCTCAATCATTTCC 57.317 34.615 0.00 0.00 0.00 3.13
5486 5716 8.052748 ACATGCCAAAACCTACAAGAATAGATA 58.947 33.333 0.00 0.00 0.00 1.98
5499 5729 4.486125 AACTGAAAACATGCCAAAACCT 57.514 36.364 0.00 0.00 0.00 3.50
5541 5771 8.409358 ACTTTGCATAATAAAGTTCACCTTCT 57.591 30.769 0.00 0.00 43.71 2.85
5718 5960 9.348476 TGTGCTAAGCATCCACAAATATTAATA 57.652 29.630 0.00 0.00 41.91 0.98
5720 5962 7.637631 TGTGCTAAGCATCCACAAATATTAA 57.362 32.000 0.00 0.00 41.91 1.40
5721 5963 7.650890 CATGTGCTAAGCATCCACAAATATTA 58.349 34.615 0.00 0.00 42.10 0.98
5722 5964 6.509656 CATGTGCTAAGCATCCACAAATATT 58.490 36.000 0.00 0.00 42.10 1.28
5723 5965 5.508489 GCATGTGCTAAGCATCCACAAATAT 60.508 40.000 0.00 0.00 42.10 1.28
5724 5966 4.202040 GCATGTGCTAAGCATCCACAAATA 60.202 41.667 0.00 0.00 42.10 1.40
5725 5967 3.429822 GCATGTGCTAAGCATCCACAAAT 60.430 43.478 0.00 0.00 42.10 2.32
5726 5968 2.094597 GCATGTGCTAAGCATCCACAAA 60.095 45.455 0.00 0.00 42.10 2.83
5727 5969 1.473677 GCATGTGCTAAGCATCCACAA 59.526 47.619 0.00 0.00 42.10 3.33
5728 5970 1.097232 GCATGTGCTAAGCATCCACA 58.903 50.000 0.00 0.00 41.91 4.17
5729 5971 1.097232 TGCATGTGCTAAGCATCCAC 58.903 50.000 6.55 0.00 41.91 4.02
5730 5972 1.097232 GTGCATGTGCTAAGCATCCA 58.903 50.000 6.55 0.00 41.91 3.41
5731 5973 0.383231 GGTGCATGTGCTAAGCATCC 59.617 55.000 6.55 0.00 41.91 3.51
5732 5974 0.028505 CGGTGCATGTGCTAAGCATC 59.971 55.000 6.55 0.00 41.91 3.91
5733 5975 0.677731 ACGGTGCATGTGCTAAGCAT 60.678 50.000 6.55 0.00 41.91 3.79
5734 5976 0.888736 AACGGTGCATGTGCTAAGCA 60.889 50.000 6.55 0.00 42.66 3.91
5735 5977 0.179189 GAACGGTGCATGTGCTAAGC 60.179 55.000 6.55 0.00 42.66 3.09
5736 5978 1.135972 GTGAACGGTGCATGTGCTAAG 60.136 52.381 6.55 0.30 42.66 2.18
5750 5992 4.811555 TCATGGACTTTGAAAGTGAACG 57.188 40.909 16.25 1.84 43.03 3.95
5755 5997 6.986231 GGAACAAAATCATGGACTTTGAAAGT 59.014 34.615 10.82 10.82 46.38 2.66
5758 6000 6.729690 AGGAACAAAATCATGGACTTTGAA 57.270 33.333 16.79 0.00 33.31 2.69
5766 6008 7.388500 ACTGCATAAAAAGGAACAAAATCATGG 59.612 33.333 0.00 0.00 0.00 3.66
5792 6034 9.322773 TCACAATGAAATAACTTGAATTGCAAA 57.677 25.926 1.71 0.00 35.74 3.68
5923 6172 1.196127 GTTAAGGCGTTTTGGAGGACG 59.804 52.381 0.00 0.00 41.89 4.79
5935 6184 4.151689 CCCACGTGATATAATGTTAAGGCG 59.848 45.833 19.30 0.00 0.00 5.52
5958 6207 3.099141 ACACATTCAACCATGGGGATTC 58.901 45.455 18.09 0.00 38.05 2.52
5962 6214 2.166254 GCTTACACATTCAACCATGGGG 59.834 50.000 18.09 8.10 41.29 4.96
5970 6222 6.449635 AAACTTGTCTGCTTACACATTCAA 57.550 33.333 0.00 0.00 0.00 2.69
5987 6239 1.488393 TGGGGCAAAAAGGGAAACTTG 59.512 47.619 0.00 0.00 39.96 3.16
5990 6242 1.881925 GCATGGGGCAAAAAGGGAAAC 60.882 52.381 0.00 0.00 43.97 2.78
6009 6261 6.919721 TCAACAGGGTTTAATTGACTTATGC 58.080 36.000 0.00 0.00 0.00 3.14


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.