AutoCloner

Multiple sequence alignment - TraesCS7A01G488900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7A01G488900	chr7A	100.000	2873	0	0	1	2873	679153283	679150411	0.000000e+00	5306.0
1	TraesCS7A01G488900	chr7A	100.000	492	0	0	3238	3729	679150046	679149555	0.000000e+00	909.0
2	TraesCS7A01G488900	chr7A	82.555	963	124	29	961	1901	679061141	679060201	0.000000e+00	808.0
3	TraesCS7A01G488900	chr7A	89.815	540	44	8	1957	2492	488799819	488800351	0.000000e+00	682.0
4	TraesCS7A01G488900	chr7A	98.765	81	1	0	1921	2001	18358032	18357952	1.080000e-30	145.0
5	TraesCS7A01G488900	chr7A	96.296	81	3	0	1921	2001	49063139	49063219	2.340000e-27	134.0
6	TraesCS7A01G488900	chr7D	95.704	1932	71	1	1	1920	587253366	587251435	0.000000e+00	3097.0
7	TraesCS7A01G488900	chr7D	83.044	979	117	32	961	1912	587160724	587159768	0.000000e+00	843.0
8	TraesCS7A01G488900	chr7D	95.011	461	13	4	3269	3729	587250700	587250250	0.000000e+00	715.0
9	TraesCS7A01G488900	chr7D	87.206	383	22	11	2493	2872	587251437	587251079	9.640000e-111	411.0
10	TraesCS7A01G488900	chr7D	100.000	37	0	0	3241	3277	587250925	587250889	6.680000e-08	69.4
11	TraesCS7A01G488900	chr7D	82.609	69	12	0	446	514	222520244	222520176	1.120000e-05	62.1
12	TraesCS7A01G488900	chr7B	91.117	1047	60	10	879	1920	658353154	658352136	0.000000e+00	1387.0
13	TraesCS7A01G488900	chr7B	84.049	978	110	34	961	1912	658293481	658292524	0.000000e+00	900.0
14	TraesCS7A01G488900	chr7B	90.083	242	14	4	3488	3729	658351340	658351109	4.680000e-79	305.0
15	TraesCS7A01G488900	chr7B	90.000	220	21	1	655	874	152056991	152057209	2.190000e-72	283.0
16	TraesCS7A01G488900	chr1A	91.633	502	39	3	1993	2492	501920856	501921356	0.000000e+00	691.0
17	TraesCS7A01G488900	chr1A	91.600	500	39	3	1995	2492	499598067	499597569	0.000000e+00	688.0
18	TraesCS7A01G488900	chr5A	92.116	482	34	4	2019	2498	440266755	440266276	0.000000e+00	676.0
19	TraesCS7A01G488900	chr5A	97.531	81	2	0	1921	2001	698081147	698081067	5.020000e-29	139.0
20	TraesCS7A01G488900	chr5A	97.500	80	2	0	1921	2000	689727232	689727153	1.810000e-28	137.0
21	TraesCS7A01G488900	chr3A	90.675	504	44	3	1993	2494	11174300	11173798	0.000000e+00	667.0
22	TraesCS7A01G488900	chr3A	89.154	544	46	8	1953	2492	13446016	13446550	0.000000e+00	665.0
23	TraesCS7A01G488900	chr3A	93.793	145	9	0	1	145	329625388	329625532	6.270000e-53	219.0
24	TraesCS7A01G488900	chr3A	98.795	83	1	0	1919	2001	628901731	628901649	8.340000e-32	148.0
25	TraesCS7A01G488900	chr3A	98.750	80	1	0	1921	2000	693151073	693150994	3.880000e-30	143.0
26	TraesCS7A01G488900	chr4A	90.234	512	40	5	1993	2495	605611039	605611549	0.000000e+00	660.0
27	TraesCS7A01G488900	chr4A	91.216	148	13	0	1	148	107794406	107794259	6.320000e-48	202.0
28	TraesCS7A01G488900	chr4A	88.272	162	14	4	226	385	107794154	107793996	4.920000e-44	189.0
29	TraesCS7A01G488900	chr4A	97.531	81	2	0	1921	2001	637174234	637174314	5.020000e-29	139.0
30	TraesCS7A01G488900	chrUn	91.614	477	36	3	2019	2492	146972490	146972015	0.000000e+00	656.0
31	TraesCS7A01G488900	chrUn	91.405	477	37	4	2019	2492	154153383	154152908	0.000000e+00	651.0
32	TraesCS7A01G488900	chr4D	91.284	218	18	1	655	872	127149871	127150087	2.820000e-76	296.0
33	TraesCS7A01G488900	chr2D	90.625	224	18	2	7	230	286026986	286027206	1.010000e-75	294.0
34	TraesCS7A01G488900	chr6B	91.204	216	17	2	655	869	692558940	692558726	3.640000e-75	292.0
35	TraesCS7A01G488900	chr6B	90.826	218	18	2	655	871	113678678	113678894	1.310000e-74	291.0
36	TraesCS7A01G488900	chr4B	90.455	220	19	2	655	874	546575809	546575592	4.710000e-74	289.0
37	TraesCS7A01G488900	chr4B	90.455	220	19	2	655	874	546598176	546597959	4.710000e-74	289.0
38	TraesCS7A01G488900	chr4B	90.045	221	20	2	655	874	592204455	592204236	6.100000e-73	285.0
39	TraesCS7A01G488900	chr3B	90.367	218	20	1	652	869	471474092	471474308	6.100000e-73	285.0
40	TraesCS7A01G488900	chr1B	88.288	222	23	3	7	228	534900019	534899801	2.860000e-66	263.0
41	TraesCS7A01G488900	chr5D	89.865	148	15	0	1	148	199423955	199423808	1.370000e-44	191.0
42	TraesCS7A01G488900	chr6A	96.341	82	3	0	1920	2001	591259938	591259857	6.500000e-28	135.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7A01G488900	chr7A	679149555	679153283	3728	True	3107.5	5306	100.00000	1	3729	2	chr7A.!!$R3	3728
1	TraesCS7A01G488900	chr7A	679060201	679061141	940	True	808.0	808	82.55500	961	1901	1	chr7A.!!$R2	940
2	TraesCS7A01G488900	chr7A	488799819	488800351	532	False	682.0	682	89.81500	1957	2492	1	chr7A.!!$F2	535
3	TraesCS7A01G488900	chr7D	587250250	587253366	3116	True	1073.1	3097	94.48025	1	3729	4	chr7D.!!$R3	3728
4	TraesCS7A01G488900	chr7D	587159768	587160724	956	True	843.0	843	83.04400	961	1912	1	chr7D.!!$R2	951
5	TraesCS7A01G488900	chr7B	658292524	658293481	957	True	900.0	900	84.04900	961	1912	1	chr7B.!!$R1	951
6	TraesCS7A01G488900	chr7B	658351109	658353154	2045	True	846.0	1387	90.60000	879	3729	2	chr7B.!!$R2	2850
7	TraesCS7A01G488900	chr1A	501920856	501921356	500	False	691.0	691	91.63300	1993	2492	1	chr1A.!!$F1	499
8	TraesCS7A01G488900	chr3A	11173798	11174300	502	True	667.0	667	90.67500	1993	2494	1	chr3A.!!$R1	501
9	TraesCS7A01G488900	chr3A	13446016	13446550	534	False	665.0	665	89.15400	1953	2492	1	chr3A.!!$F1	539
10	TraesCS7A01G488900	chr4A	605611039	605611549	510	False	660.0	660	90.23400	1993	2495	1	chr4A.!!$F1	502

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
772	785	0.538584	TCCCTGTAGTCGTCGCTAGA	59.461	55.0	0.00	0.0	0.0	2.43	F
1920	1983	0.033090	CTTACGTTATCCCGGAGCCC	59.967	60.0	0.73	0.0	0.0	5.19	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2274	2348	0.103572	GGCATAGTTTAGCCGTCGGA	59.896	55.0	17.49	0.0	41.7	4.55	R
3373	3689	0.107459	GAGCGAAGGAAGGAGGCAAT	60.107	55.0	0.00	0.0	0.0	3.56	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
42	43	1.760192	GGAATGAGAGCCAATGCAGT	58.240	50.000	0.00	0.00	41.13	4.40
44	45	2.362736	GAATGAGAGCCAATGCAGTCA	58.637	47.619	0.00	0.00	41.13	3.41
124	125	5.389520	AGGAGATAGATCGATTGGACAAGA	58.610	41.667	0.00	0.00	0.00	3.02
174	175	7.539712	AATCGAAGAGAAATAATCGAAAGCA	57.460	32.000	0.60	0.00	46.02	3.91
288	289	7.523052	GCCTATTTGATGTTTAAACACACTCCA	60.523	37.037	22.78	12.58	42.51	3.86
313	314	6.925211	ACGTATGAGAGAGAAATCAACTTCA	58.075	36.000	0.00	0.00	0.00	3.02
396	397	5.470098	ACCGCATAGGCATAGAAACATAAAG	59.530	40.000	0.00	0.00	46.52	1.85
411	412	1.698506	TAAAGGTGCACAACAAGGGG	58.301	50.000	20.43	0.00	0.00	4.79
500	501	2.576191	CCCTCTTTACATCACAAGGGGA	59.424	50.000	0.00	0.00	42.68	4.81
592	593	6.056884	ACATCAAGTGTTCCAAATTTGCAAT	58.943	32.000	12.92	2.23	38.01	3.56
594	595	7.385752	ACATCAAGTGTTCCAAATTTGCAATAG	59.614	33.333	12.92	0.00	38.01	1.73
614	615	7.467623	CAATAGTAAGGCTTTTGACATCACTC	58.532	38.462	4.45	0.00	38.05	3.51
639	640	2.357637	TGCTTTAATAGATGGCGGTTGC	59.642	45.455	0.00	0.00	41.71	4.17
690	703	5.138276	ACTTCCTGACTGTCTACTACAACA	58.862	41.667	9.51	0.00	37.74	3.33
708	721	1.269413	ACAAGTTGTGTACGACTCCGG	60.269	52.381	7.96	0.00	39.59	5.14
720	733	3.470888	CTCCGGCGATGAAGGGGT	61.471	66.667	9.30	0.00	0.00	4.95
726	739	0.815615	GGCGATGAAGGGGTGATGAC	60.816	60.000	0.00	0.00	0.00	3.06
756	769	3.296709	TTCGGCTCGCTTCAGTCCC	62.297	63.158	0.00	0.00	0.00	4.46
772	785	0.538584	TCCCTGTAGTCGTCGCTAGA	59.461	55.000	0.00	0.00	0.00	2.43
786	799	2.038689	TCGCTAGATGGTCTACGGATCT	59.961	50.000	0.00	0.00	30.31	2.75
798	811	6.551975	TGGTCTACGGATCTGGATGTAATTTA	59.448	38.462	6.47	0.00	0.00	1.40
850	863	9.676861	TGCCATTATTGAAGATGAATAGATAGG	57.323	33.333	0.00	0.00	0.00	2.57
899	912	2.892852	TGGAAAATCTGCCTTGTTCCTG	59.107	45.455	0.00	0.00	38.84	3.86
1066	1103	2.540910	TCCCTCCTCCTCCCCACT	60.541	66.667	0.00	0.00	0.00	4.00
1110	1148	2.483745	GTTTCTTTAGCCGCCGCC	59.516	61.111	0.00	0.00	34.57	6.13
1352	1406	0.322546	GGGTTTCTTCCATCGGCACT	60.323	55.000	0.00	0.00	0.00	4.40
1436	1490	2.416432	GCTCCGCCTCGAGTACCTT	61.416	63.158	12.31	0.00	32.11	3.50
1715	1769	3.399181	CCCAAGCTGCTCGGGGTA	61.399	66.667	18.28	0.00	36.21	3.69
1750	1804	2.124151	CTTCCAGGGGGCAATCCG	60.124	66.667	0.00	0.00	36.01	4.18
1782	1836	1.203237	AGAAGGACCTCCAGCTCTTCA	60.203	52.381	10.60	0.00	37.04	3.02
1791	1845	0.318441	CCAGCTCTTCAACGTCTCCA	59.682	55.000	0.00	0.00	0.00	3.86
1920	1983	0.033090	CTTACGTTATCCCGGAGCCC	59.967	60.000	0.73	0.00	0.00	5.19
1921	1984	0.687098	TTACGTTATCCCGGAGCCCA	60.687	55.000	0.73	0.00	0.00	5.36
1922	1985	1.394266	TACGTTATCCCGGAGCCCAC	61.394	60.000	0.73	0.00	0.00	4.61
1923	1986	2.432300	CGTTATCCCGGAGCCCACT	61.432	63.158	0.73	0.00	0.00	4.00
1924	1987	1.111116	CGTTATCCCGGAGCCCACTA	61.111	60.000	0.73	0.00	0.00	2.74
1925	1988	0.391966	GTTATCCCGGAGCCCACTAC	59.608	60.000	0.73	0.00	0.00	2.73
1927	1990	2.989173	TATCCCGGAGCCCACTACCG	62.989	65.000	0.73	0.00	45.24	4.02
1930	1993	3.072468	CGGAGCCCACTACCGGAA	61.072	66.667	9.46	0.00	42.48	4.30
1931	1994	2.652095	CGGAGCCCACTACCGGAAA	61.652	63.158	9.46	0.00	42.48	3.13
1932	1995	1.681076	GGAGCCCACTACCGGAAAA	59.319	57.895	9.46	0.00	0.00	2.29
1933	1996	0.675837	GGAGCCCACTACCGGAAAAC	60.676	60.000	9.46	0.00	0.00	2.43
1934	1997	1.004200	AGCCCACTACCGGAAAACG	60.004	57.895	9.46	0.00	43.80	3.60
1943	2006	4.427793	CGGAAAACGGCTTTACGC	57.572	55.556	4.23	0.00	44.11	4.42
1988	2053	3.090219	GCCGTCGGCCTACTTGGAT	62.090	63.158	26.23	0.00	44.06	3.41
1989	2054	1.067582	CCGTCGGCCTACTTGGATC	59.932	63.158	5.79	0.00	38.35	3.36
1990	2055	1.392710	CCGTCGGCCTACTTGGATCT	61.393	60.000	5.79	0.00	38.35	2.75
1991	2056	1.315690	CGTCGGCCTACTTGGATCTA	58.684	55.000	5.79	0.00	38.35	1.98
1997	2062	1.618837	GCCTACTTGGATCTATGCCGA	59.381	52.381	0.00	0.00	38.35	5.54
2001	2066	2.388735	ACTTGGATCTATGCCGACAGA	58.611	47.619	0.00	0.00	0.00	3.41
2042	2113	1.144057	GCAGTGCTATGCCTACGGT	59.856	57.895	8.18	0.00	40.43	4.83
2047	2118	2.764572	AGTGCTATGCCTACGGTAAAGT	59.235	45.455	0.00	0.00	0.00	2.66
2061	2132	4.227538	CGGTAAAGTCGTAGGCATAGATG	58.772	47.826	0.00	0.00	0.00	2.90
2062	2133	4.557205	GGTAAAGTCGTAGGCATAGATGG	58.443	47.826	0.00	0.00	0.00	3.51
2124	2197	3.704231	GAGCACCACGGGATGCCAT	62.704	63.158	0.00	0.00	43.12	4.40
2184	2257	1.776662	TTCTACCTATGCTGACGGCT	58.223	50.000	7.96	0.00	42.39	5.52
2270	2344	1.070175	CGTTGCCGTCAGACGAAAAAT	60.070	47.619	24.88	0.00	46.05	1.82
2274	2348	3.395639	TGCCGTCAGACGAAAAATACTT	58.604	40.909	24.88	0.00	46.05	2.24
2299	2373	0.179092	GGCTAAACTATGCCGACGGT	60.179	55.000	16.73	0.00	39.71	4.83
2303	2377	2.396590	AAACTATGCCGACGGTTGAT	57.603	45.000	16.73	7.99	0.00	2.57
2383	2457	5.701750	ACAAGACTACGCTGACGATATCTAT	59.298	40.000	0.34	0.00	43.93	1.98
2516	2590	5.586243	GCCTGACTGCTTAATGTTCATTCTA	59.414	40.000	1.11	0.00	0.00	2.10
2523	2597	8.186821	ACTGCTTAATGTTCATTCTAGCATTTC	58.813	33.333	22.80	5.93	36.66	2.17
2528	2602	4.252878	TGTTCATTCTAGCATTTCTCGCA	58.747	39.130	0.00	0.00	0.00	5.10
2710	2814	7.064016	CGCTATATCTAATTTGAAAGAGAGCCC	59.936	40.741	9.25	0.00	0.00	5.19
2741	2845	6.201044	TGGCACAACCGTTATTTAAAACAATG	59.799	34.615	0.00	0.00	43.94	2.82
2744	2848	7.381678	GCACAACCGTTATTTAAAACAATGGTA	59.618	33.333	21.29	0.00	39.98	3.25
2760	2864	5.354234	ACAATGGTAGATCTGTTTTTAGCCG	59.646	40.000	5.18	0.00	0.00	5.52
2762	2866	2.612672	GGTAGATCTGTTTTTAGCCGCC	59.387	50.000	5.18	0.00	0.00	6.13
2813	2917	0.178891	TCAACCTCCAGCCTTCCTCT	60.179	55.000	0.00	0.00	0.00	3.69
2823	2927	1.203364	AGCCTTCCTCTTCTCCTTCCA	60.203	52.381	0.00	0.00	0.00	3.53
2841	2945	0.179056	CAAAGACCACCACACGGACT	60.179	55.000	0.00	0.00	35.59	3.85
3297	3613	1.071471	CTGTGGCTCGTTCCTGGTT	59.929	57.895	0.00	0.00	0.00	3.67
3374	3690	3.049674	CTCGGTGTTGCGTGCCAT	61.050	61.111	0.00	0.00	0.00	4.40
3375	3691	2.593148	TCGGTGTTGCGTGCCATT	60.593	55.556	0.00	0.00	0.00	3.16
3392	3708	0.107459	ATTGCCTCCTTCCTTCGCTC	60.107	55.000	0.00	0.00	0.00	5.03
3393	3709	2.202810	GCCTCCTTCCTTCGCTCG	60.203	66.667	0.00	0.00	0.00	5.03
3447	3763	4.466726	AGACGACTTACCTCCAGCTAAATT	59.533	41.667	0.00	0.00	0.00	1.82

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
42	43	0.839277	AATCATCCCATGTCGCCTGA	59.161	50.000	0.00	0.00	0.00	3.86
44	45	1.768275	TGTAATCATCCCATGTCGCCT	59.232	47.619	0.00	0.00	0.00	5.52
124	125	0.835941	CTCCTGGCATAGCAGGTCTT	59.164	55.000	6.62	0.00	39.51	3.01
174	175	5.052481	GTCCTTTGTCTACCTTTGTAACGT	58.948	41.667	0.00	0.00	0.00	3.99
266	267	6.695278	CGTTGGAGTGTGTTTAAACATCAAAT	59.305	34.615	23.11	11.83	41.59	2.32
288	289	7.378966	TGAAGTTGATTTCTCTCTCATACGTT	58.621	34.615	0.00	0.00	0.00	3.99
346	347	7.781219	TGCTATGGGCTATGATGCATATAAATT	59.219	33.333	0.00	0.00	42.39	1.82
396	397	3.615709	GGCCCCTTGTTGTGCACC	61.616	66.667	15.69	0.00	0.00	5.01
500	501	5.172934	CACCAATTGAAGCAGCATATTTGT	58.827	37.500	7.12	0.00	0.00	2.83
592	593	6.166279	CAGAGTGATGTCAAAAGCCTTACTA	58.834	40.000	0.00	0.00	0.00	1.82
594	595	4.757149	ACAGAGTGATGTCAAAAGCCTTAC	59.243	41.667	0.00	0.00	0.00	2.34
614	615	3.627577	ACCGCCATCTATTAAAGCAACAG	59.372	43.478	0.00	0.00	0.00	3.16
639	640	0.037326	TAAGGAGCGCACCAGAACAG	60.037	55.000	26.04	0.00	0.00	3.16
690	703	0.319297	GCCGGAGTCGTACACAACTT	60.319	55.000	5.05	0.00	33.95	2.66
708	721	1.154205	CGTCATCACCCCTTCATCGC	61.154	60.000	0.00	0.00	0.00	4.58
756	769	1.941294	ACCATCTAGCGACGACTACAG	59.059	52.381	0.00	0.00	0.00	2.74
772	785	2.964209	ACATCCAGATCCGTAGACCAT	58.036	47.619	0.00	0.00	0.00	3.55
817	830	8.523915	TTCATCTTCAATAATGGCAGTACAAT	57.476	30.769	0.00	0.00	0.00	2.71
820	833	9.494271	TCTATTCATCTTCAATAATGGCAGTAC	57.506	33.333	0.00	0.00	0.00	2.73
869	882	5.116084	AGGCAGATTTTCCAAGTGCTATA	57.884	39.130	0.00	0.00	34.46	1.31
899	912	7.739477	CGAAGTACATAGTAGTATTAGCACGTC	59.261	40.741	0.00	0.00	0.00	4.34
1066	1103	1.229723	GGGAGGTGGTGGGGAGTTA	60.230	63.158	0.00	0.00	0.00	2.24
1362	1416	2.684655	GTACCACACCGGGGCCTA	60.685	66.667	1.73	0.00	40.22	3.93
1649	1703	2.048127	AAGGCGTTGTCTCCGAGC	60.048	61.111	0.00	0.00	0.00	5.03
1711	1765	2.656069	TTCCTGGCGAGCTGTACCC	61.656	63.158	0.00	0.00	0.00	3.69
1715	1769	4.379243	CGGTTCCTGGCGAGCTGT	62.379	66.667	0.00	0.00	0.00	4.40
1750	1804	1.337917	GGTCCTTCTGGTCGAAGTTCC	60.338	57.143	0.00	0.00	46.23	3.62
1782	1836	2.093128	AGAGTTGGTTGTTGGAGACGTT	60.093	45.455	0.00	0.00	0.00	3.99
1791	1845	1.228154	GGCCGGAGAGTTGGTTGTT	60.228	57.895	5.05	0.00	0.00	2.83
1943	2006	1.427819	GCATAGTTTTGGCCGTCGG	59.572	57.895	6.99	6.99	0.00	4.79
1944	2007	1.427819	GGCATAGTTTTGGCCGTCG	59.572	57.895	0.00	0.00	38.04	5.12
1948	2011	1.427819	CGTCGGCATAGTTTTGGCC	59.572	57.895	0.00	0.00	44.27	5.36
1949	2012	1.427819	CCGTCGGCATAGTTTTGGC	59.572	57.895	0.00	0.00	38.71	4.52
1979	2044	3.570125	TCTGTCGGCATAGATCCAAGTAG	59.430	47.826	0.00	0.00	0.00	2.57
1982	2047	3.068732	TCTTCTGTCGGCATAGATCCAAG	59.931	47.826	0.00	0.00	0.00	3.61
1983	2048	3.031013	TCTTCTGTCGGCATAGATCCAA	58.969	45.455	0.00	0.00	0.00	3.53
1985	2050	3.735237	TTCTTCTGTCGGCATAGATCC	57.265	47.619	0.00	0.00	0.00	3.36
1986	2051	3.804873	GGTTTCTTCTGTCGGCATAGATC	59.195	47.826	0.00	0.00	0.00	2.75
1988	2053	2.565391	TGGTTTCTTCTGTCGGCATAGA	59.435	45.455	0.00	0.00	0.00	1.98
1989	2054	2.932614	CTGGTTTCTTCTGTCGGCATAG	59.067	50.000	0.00	0.00	0.00	2.23
1990	2055	2.354704	CCTGGTTTCTTCTGTCGGCATA	60.355	50.000	0.00	0.00	0.00	3.14
1991	2056	1.611673	CCTGGTTTCTTCTGTCGGCAT	60.612	52.381	0.00	0.00	0.00	4.40
1997	2062	3.202151	TGTCTTTCCCTGGTTTCTTCTGT	59.798	43.478	0.00	0.00	0.00	3.41
2001	2066	2.092592	ACGTGTCTTTCCCTGGTTTCTT	60.093	45.455	0.00	0.00	0.00	2.52
2042	2113	6.010850	AGATCCATCTATGCCTACGACTTTA	58.989	40.000	0.00	0.00	34.85	1.85
2270	2344	3.489738	GCATAGTTTAGCCGTCGGAAGTA	60.490	47.826	17.49	8.28	0.00	2.24
2274	2348	0.103572	GGCATAGTTTAGCCGTCGGA	59.896	55.000	17.49	0.00	41.70	4.55
2343	2417	1.794151	TTGTCAGACCGTCGGCGTAA	61.794	55.000	12.28	0.00	36.15	3.18
2383	2457	3.845259	GGCATAGACCCGTCGGCA	61.845	66.667	5.50	0.00	34.09	5.69
2516	2590	2.072298	GAACTGAGTGCGAGAAATGCT	58.928	47.619	0.00	0.00	0.00	3.79
2523	2597	6.531594	TGATAATAACTTGAACTGAGTGCGAG	59.468	38.462	6.27	6.27	0.00	5.03
2528	2602	7.545965	CGGAACTGATAATAACTTGAACTGAGT	59.454	37.037	0.00	0.00	0.00	3.41
2694	2798	5.423290	CCAAATAGGGGCTCTCTTTCAAATT	59.577	40.000	0.00	0.00	0.00	1.82
2710	2814	4.712122	AATAACGGTTGTGCCAAATAGG	57.288	40.909	3.07	0.00	41.84	2.57
2741	2845	2.612672	GGCGGCTAAAAACAGATCTACC	59.387	50.000	0.00	0.00	0.00	3.18
2744	2848	2.027192	TCTGGCGGCTAAAAACAGATCT	60.027	45.455	11.43	0.00	33.62	2.75
2753	2857	2.290387	TGGTTTACATCTGGCGGCTAAA	60.290	45.455	11.43	3.29	0.00	1.85
2760	2864	2.629639	CCGTTTGGTTTACATCTGGC	57.370	50.000	0.00	0.00	0.00	4.85
2813	2917	2.131854	TGGTGGTCTTTGGAAGGAGAA	58.868	47.619	0.00	0.00	0.00	2.87
2823	2927	0.179056	CAGTCCGTGTGGTGGTCTTT	60.179	55.000	0.00	0.00	36.30	2.52
3282	3598	1.371183	CTCAACCAGGAACGAGCCA	59.629	57.895	0.00	0.00	0.00	4.75
3312	3628	1.187087	GTGAAGTGAGGTCCGAGGAT	58.813	55.000	0.00	0.00	0.00	3.24
3320	3636	1.867919	CGAGGCGAGTGAAGTGAGGT	61.868	60.000	0.00	0.00	0.00	3.85
3373	3689	0.107459	GAGCGAAGGAAGGAGGCAAT	60.107	55.000	0.00	0.00	0.00	3.56
3374	3690	1.296715	GAGCGAAGGAAGGAGGCAA	59.703	57.895	0.00	0.00	0.00	4.52
3375	3691	2.982130	GAGCGAAGGAAGGAGGCA	59.018	61.111	0.00	0.00	0.00	4.75
3447	3763	7.767250	ATACATCGACTCTCTAATTCATCCA	57.233	36.000	0.00	0.00	0.00	3.41
3643	3959	8.002459	ACTGGGAGTAGTAAATTCCAAAAGAAA	58.998	33.333	0.00	0.00	38.21	2.52

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.