Multiple sequence alignment - TraesCS7A01G488300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G488300 chr7A 100.000 2261 0 0 1 2261 678600612 678602872 0.000000e+00 4176.0
1 TraesCS7A01G488300 chr7A 92.424 726 39 10 1323 2042 523145451 523144736 0.000000e+00 1022.0
2 TraesCS7A01G488300 chr7A 91.293 735 41 11 1328 2042 498226659 498227390 0.000000e+00 981.0
3 TraesCS7A01G488300 chr7A 90.847 732 44 12 1326 2047 518528792 518529510 0.000000e+00 959.0
4 TraesCS7A01G488300 chr7A 94.231 624 32 3 709 1332 494193698 494194317 0.000000e+00 950.0
5 TraesCS7A01G488300 chr7A 96.833 221 6 1 2042 2261 494194302 494194522 3.550000e-98 368.0
6 TraesCS7A01G488300 chr7A 85.069 288 43 0 1 288 36340837 36341124 6.110000e-76 294.0
7 TraesCS7A01G488300 chr7A 92.248 129 10 0 284 412 678600767 678600895 1.380000e-42 183.0
8 TraesCS7A01G488300 chr7A 92.248 129 10 0 156 284 678600895 678601023 1.380000e-42 183.0
9 TraesCS7A01G488300 chr1A 97.688 692 7 5 1354 2045 394604789 394604107 0.000000e+00 1181.0
10 TraesCS7A01G488300 chr1A 95.822 718 20 6 1329 2044 591977500 591978209 0.000000e+00 1151.0
11 TraesCS7A01G488300 chr2A 91.747 727 41 11 1328 2039 752868854 752868132 0.000000e+00 992.0
12 TraesCS7A01G488300 chr2A 94.872 624 27 4 709 1332 554512583 554513201 0.000000e+00 970.0
13 TraesCS7A01G488300 chr2A 97.285 221 5 1 2042 2261 554513186 554513406 7.630000e-100 374.0
14 TraesCS7A01G488300 chr2A 85.246 122 18 0 284 405 42701794 42701915 2.360000e-25 126.0
15 TraesCS7A01G488300 chr2A 80.488 164 32 0 120 283 65950974 65950811 2.360000e-25 126.0
16 TraesCS7A01G488300 chr2A 76.173 277 39 12 1 277 42701666 42701915 1.100000e-23 121.0
17 TraesCS7A01G488300 chr2B 95.032 624 27 3 709 1332 359643775 359643156 0.000000e+00 977.0
18 TraesCS7A01G488300 chr2B 94.712 624 29 3 709 1332 776650487 776651106 0.000000e+00 966.0
19 TraesCS7A01G488300 chr2B 97.285 221 5 1 2042 2261 359643171 359642951 7.630000e-100 374.0
20 TraesCS7A01G488300 chr2B 95.928 221 7 2 2042 2261 776651091 776651310 7.680000e-95 357.0
21 TraesCS7A01G488300 chr2B 81.726 197 25 4 284 478 396402022 396402209 1.080000e-33 154.0
22 TraesCS7A01G488300 chr7D 91.160 724 46 16 1328 2042 599729673 599728959 0.000000e+00 966.0
23 TraesCS7A01G488300 chr7D 90.792 619 44 3 709 1326 571238871 571239477 0.000000e+00 815.0
24 TraesCS7A01G488300 chr7D 88.535 157 16 2 514 670 219638595 219638441 2.960000e-44 189.0
25 TraesCS7A01G488300 chr7D 88.889 153 16 1 518 670 204017581 204017430 1.070000e-43 187.0
26 TraesCS7A01G488300 chr7D 86.585 164 20 2 508 670 23074855 23074693 1.780000e-41 180.0
27 TraesCS7A01G488300 chr7D 83.444 151 13 7 2042 2180 54000112 53999962 1.820000e-26 130.0
28 TraesCS7A01G488300 chr7D 83.444 151 13 7 2042 2180 571239468 571239618 1.820000e-26 130.0
29 TraesCS7A01G488300 chr4A 90.413 751 47 16 1321 2050 329979647 329978901 0.000000e+00 965.0
30 TraesCS7A01G488300 chr4A 94.071 624 33 3 709 1332 559062355 559061736 0.000000e+00 944.0
31 TraesCS7A01G488300 chr4A 96.847 222 5 2 2042 2261 559061751 559061530 9.860000e-99 370.0
32 TraesCS7A01G488300 chr4A 84.713 157 17 7 326 478 661476478 661476631 1.400000e-32 150.0
33 TraesCS7A01G488300 chr1B 94.240 625 31 4 709 1332 428731659 428731039 0.000000e+00 950.0
34 TraesCS7A01G488300 chr1B 97.285 221 5 1 2042 2261 428731054 428730834 7.630000e-100 374.0
35 TraesCS7A01G488300 chr3B 93.968 630 28 4 709 1332 520465276 520465901 0.000000e+00 944.0
36 TraesCS7A01G488300 chr3B 97.285 221 5 1 2042 2261 520465886 520466106 7.630000e-100 374.0
37 TraesCS7A01G488300 chr3B 89.032 155 16 1 515 669 252593438 252593591 8.240000e-45 191.0
38 TraesCS7A01G488300 chr3A 90.067 745 51 18 1318 2050 210451225 210451958 0.000000e+00 944.0
39 TraesCS7A01G488300 chr3A 87.500 632 44 8 709 1326 41433310 41432700 0.000000e+00 697.0
40 TraesCS7A01G488300 chr3A 88.172 93 11 0 84 176 742319092 742319000 6.600000e-21 111.0
41 TraesCS7A01G488300 chr3A 92.727 55 3 1 2202 2256 41432561 41432508 6.700000e-11 78.7
42 TraesCS7A01G488300 chr5D 89.557 632 40 10 709 1326 530378824 530378205 0.000000e+00 778.0
43 TraesCS7A01G488300 chr5D 82.000 150 13 8 2042 2178 530378214 530378066 5.100000e-22 115.0
44 TraesCS7A01G488300 chr3D 88.766 632 45 9 709 1326 57320276 57320895 0.000000e+00 750.0
45 TraesCS7A01G488300 chr3D 89.103 156 16 1 515 670 173712928 173713082 2.290000e-45 193.0
46 TraesCS7A01G488300 chr5B 88.601 193 22 0 284 476 541943209 541943401 3.750000e-58 235.0
47 TraesCS7A01G488300 chr6D 88.205 195 21 2 284 478 470940033 470940225 4.860000e-57 231.0
48 TraesCS7A01G488300 chr6D 89.744 156 15 1 515 670 140015149 140015303 4.930000e-47 198.0
49 TraesCS7A01G488300 chr4B 87.629 194 23 1 284 477 54752783 54752591 8.130000e-55 224.0
50 TraesCS7A01G488300 chr6B 87.500 192 24 0 287 478 719885314 719885123 2.920000e-54 222.0
51 TraesCS7A01G488300 chr1D 89.441 161 10 5 515 670 17672342 17672500 1.770000e-46 196.0
52 TraesCS7A01G488300 chr2D 88.889 153 16 1 518 670 618688484 618688333 1.070000e-43 187.0
53 TraesCS7A01G488300 chr5A 87.898 157 17 2 515 670 366139023 366139178 1.380000e-42 183.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G488300 chr7A 678600612 678602872 2260 False 1514.00 4176 94.8320 1 2261 3 chr7A.!!$F5 2260
1 TraesCS7A01G488300 chr7A 523144736 523145451 715 True 1022.00 1022 92.4240 1323 2042 1 chr7A.!!$R1 719
2 TraesCS7A01G488300 chr7A 498226659 498227390 731 False 981.00 981 91.2930 1328 2042 1 chr7A.!!$F2 714
3 TraesCS7A01G488300 chr7A 518528792 518529510 718 False 959.00 959 90.8470 1326 2047 1 chr7A.!!$F3 721
4 TraesCS7A01G488300 chr7A 494193698 494194522 824 False 659.00 950 95.5320 709 2261 2 chr7A.!!$F4 1552
5 TraesCS7A01G488300 chr1A 394604107 394604789 682 True 1181.00 1181 97.6880 1354 2045 1 chr1A.!!$R1 691
6 TraesCS7A01G488300 chr1A 591977500 591978209 709 False 1151.00 1151 95.8220 1329 2044 1 chr1A.!!$F1 715
7 TraesCS7A01G488300 chr2A 752868132 752868854 722 True 992.00 992 91.7470 1328 2039 1 chr2A.!!$R2 711
8 TraesCS7A01G488300 chr2A 554512583 554513406 823 False 672.00 970 96.0785 709 2261 2 chr2A.!!$F2 1552
9 TraesCS7A01G488300 chr2B 359642951 359643775 824 True 675.50 977 96.1585 709 2261 2 chr2B.!!$R1 1552
10 TraesCS7A01G488300 chr2B 776650487 776651310 823 False 661.50 966 95.3200 709 2261 2 chr2B.!!$F2 1552
11 TraesCS7A01G488300 chr7D 599728959 599729673 714 True 966.00 966 91.1600 1328 2042 1 chr7D.!!$R5 714
12 TraesCS7A01G488300 chr7D 571238871 571239618 747 False 472.50 815 87.1180 709 2180 2 chr7D.!!$F1 1471
13 TraesCS7A01G488300 chr4A 329978901 329979647 746 True 965.00 965 90.4130 1321 2050 1 chr4A.!!$R1 729
14 TraesCS7A01G488300 chr4A 559061530 559062355 825 True 657.00 944 95.4590 709 2261 2 chr4A.!!$R2 1552
15 TraesCS7A01G488300 chr1B 428730834 428731659 825 True 662.00 950 95.7625 709 2261 2 chr1B.!!$R1 1552
16 TraesCS7A01G488300 chr3B 520465276 520466106 830 False 659.00 944 95.6265 709 2261 2 chr3B.!!$F2 1552
17 TraesCS7A01G488300 chr3A 210451225 210451958 733 False 944.00 944 90.0670 1318 2050 1 chr3A.!!$F1 732
18 TraesCS7A01G488300 chr3A 41432508 41433310 802 True 387.85 697 90.1135 709 2256 2 chr3A.!!$R2 1547
19 TraesCS7A01G488300 chr5D 530378066 530378824 758 True 446.50 778 85.7785 709 2178 2 chr5D.!!$R1 1469
20 TraesCS7A01G488300 chr3D 57320276 57320895 619 False 750.00 750 88.7660 709 1326 1 chr3D.!!$F1 617

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
826 829 0.034059 CACCCTGTTGTCTCTCGCTT 59.966 55.0 0.0 0.0 0.0 4.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2078 2179 1.421268 TCTGGTGCTGGATTCTGTTGT 59.579 47.619 0.0 0.0 0.0 3.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 4.492160 GCGCACCAGATCCGTCGA 62.492 66.667 0.30 0.00 0.00 4.20
28 29 2.579787 CGCACCAGATCCGTCGAC 60.580 66.667 5.18 5.18 0.00 4.20
29 30 2.202756 GCACCAGATCCGTCGACC 60.203 66.667 10.58 0.00 0.00 4.79
30 31 2.494918 CACCAGATCCGTCGACCC 59.505 66.667 10.58 0.00 0.00 4.46
31 32 3.138798 ACCAGATCCGTCGACCCG 61.139 66.667 10.58 0.00 0.00 5.28
32 33 4.570663 CCAGATCCGTCGACCCGC 62.571 72.222 10.58 0.00 0.00 6.13
33 34 4.570663 CAGATCCGTCGACCCGCC 62.571 72.222 10.58 0.00 0.00 6.13
34 35 4.816984 AGATCCGTCGACCCGCCT 62.817 66.667 10.58 0.00 0.00 5.52
35 36 2.903855 GATCCGTCGACCCGCCTA 60.904 66.667 10.58 0.00 0.00 3.93
36 37 2.440796 ATCCGTCGACCCGCCTAA 60.441 61.111 10.58 0.00 0.00 2.69
37 38 2.403671 GATCCGTCGACCCGCCTAAG 62.404 65.000 10.58 0.00 0.00 2.18
38 39 4.867599 CCGTCGACCCGCCTAAGC 62.868 72.222 10.58 0.00 0.00 3.09
39 40 4.867599 CGTCGACCCGCCTAAGCC 62.868 72.222 10.58 0.00 34.57 4.35
40 41 4.525949 GTCGACCCGCCTAAGCCC 62.526 72.222 3.51 0.00 34.57 5.19
42 43 3.861797 CGACCCGCCTAAGCCCAT 61.862 66.667 0.00 0.00 34.57 4.00
43 44 2.111251 GACCCGCCTAAGCCCATC 59.889 66.667 0.00 0.00 34.57 3.51
44 45 2.366972 ACCCGCCTAAGCCCATCT 60.367 61.111 0.00 0.00 34.57 2.90
45 46 1.074775 ACCCGCCTAAGCCCATCTA 60.075 57.895 0.00 0.00 34.57 1.98
46 47 1.122019 ACCCGCCTAAGCCCATCTAG 61.122 60.000 0.00 0.00 34.57 2.43
47 48 1.674057 CCGCCTAAGCCCATCTAGG 59.326 63.158 0.00 0.00 34.57 3.02
56 57 3.996124 CCATCTAGGCCCGGCGAG 61.996 72.222 9.30 0.00 0.00 5.03
57 58 2.912542 CATCTAGGCCCGGCGAGA 60.913 66.667 9.30 13.51 0.00 4.04
58 59 2.118513 ATCTAGGCCCGGCGAGAT 59.881 61.111 9.30 16.28 30.53 2.75
59 60 1.979693 ATCTAGGCCCGGCGAGATC 60.980 63.158 9.30 0.00 29.81 2.75
60 61 2.433646 ATCTAGGCCCGGCGAGATCT 62.434 60.000 9.30 0.00 29.81 2.75
61 62 1.303398 CTAGGCCCGGCGAGATCTA 60.303 63.158 9.30 3.83 0.00 1.98
62 63 1.303398 TAGGCCCGGCGAGATCTAG 60.303 63.158 9.30 0.00 0.00 2.43
63 64 2.766306 TAGGCCCGGCGAGATCTAGG 62.766 65.000 9.30 0.00 0.00 3.02
64 65 3.686045 GCCCGGCGAGATCTAGGG 61.686 72.222 9.30 16.51 44.72 3.53
65 66 2.203509 CCCGGCGAGATCTAGGGT 60.204 66.667 9.30 0.00 37.36 4.34
66 67 1.833049 CCCGGCGAGATCTAGGGTT 60.833 63.158 9.30 0.00 37.36 4.11
67 68 0.538977 CCCGGCGAGATCTAGGGTTA 60.539 60.000 9.30 0.00 37.36 2.85
68 69 1.325355 CCGGCGAGATCTAGGGTTAA 58.675 55.000 9.30 0.00 0.00 2.01
69 70 1.269998 CCGGCGAGATCTAGGGTTAAG 59.730 57.143 9.30 0.00 0.00 1.85
70 71 1.269998 CGGCGAGATCTAGGGTTAAGG 59.730 57.143 0.00 0.00 0.00 2.69
71 72 1.001068 GGCGAGATCTAGGGTTAAGGC 59.999 57.143 4.92 0.00 0.00 4.35
72 73 1.001068 GCGAGATCTAGGGTTAAGGCC 59.999 57.143 4.92 0.00 0.00 5.19
73 74 2.317040 CGAGATCTAGGGTTAAGGCCA 58.683 52.381 5.01 0.00 0.00 5.36
74 75 2.036089 CGAGATCTAGGGTTAAGGCCAC 59.964 54.545 5.01 0.00 0.00 5.01
75 76 2.369203 GAGATCTAGGGTTAAGGCCACC 59.631 54.545 5.01 3.24 0.00 4.61
76 77 1.070289 GATCTAGGGTTAAGGCCACCG 59.930 57.143 5.01 0.00 34.79 4.94
77 78 1.153229 CTAGGGTTAAGGCCACCGC 60.153 63.158 5.01 0.00 34.79 5.68
145 146 4.552365 CACATCCGCCGCTGGGAT 62.552 66.667 0.00 0.00 45.09 3.85
146 147 4.241555 ACATCCGCCGCTGGGATC 62.242 66.667 0.00 0.00 42.35 3.36
147 148 4.996434 CATCCGCCGCTGGGATCC 62.996 72.222 1.92 1.92 42.35 3.36
156 157 4.864334 CTGGGATCCCGCTGCACC 62.864 72.222 26.03 0.00 39.42 5.01
167 168 3.736100 CTGCACCGCGCCATTGAA 61.736 61.111 0.00 0.00 41.33 2.69
168 169 3.055080 CTGCACCGCGCCATTGAAT 62.055 57.895 0.00 0.00 41.33 2.57
169 170 2.278142 GCACCGCGCCATTGAATC 60.278 61.111 0.00 0.00 32.94 2.52
170 171 3.050166 GCACCGCGCCATTGAATCA 62.050 57.895 0.00 0.00 32.94 2.57
171 172 1.226379 CACCGCGCCATTGAATCAC 60.226 57.895 0.00 0.00 0.00 3.06
172 173 2.406616 ACCGCGCCATTGAATCACC 61.407 57.895 0.00 0.00 0.00 4.02
173 174 2.023181 CGCGCCATTGAATCACCG 59.977 61.111 0.00 0.00 0.00 4.94
174 175 2.408835 GCGCCATTGAATCACCGG 59.591 61.111 0.00 0.00 0.00 5.28
175 176 2.112198 GCGCCATTGAATCACCGGA 61.112 57.895 9.46 0.00 0.00 5.14
176 177 2.016961 CGCCATTGAATCACCGGAG 58.983 57.895 9.46 0.00 0.00 4.63
177 178 0.744414 CGCCATTGAATCACCGGAGT 60.744 55.000 9.46 0.00 0.00 3.85
178 179 0.734889 GCCATTGAATCACCGGAGTG 59.265 55.000 9.46 0.00 46.00 3.51
179 180 1.950484 GCCATTGAATCACCGGAGTGT 60.950 52.381 9.46 0.00 44.83 3.55
180 181 2.009774 CCATTGAATCACCGGAGTGTC 58.990 52.381 9.46 2.80 44.83 3.67
181 182 2.009774 CATTGAATCACCGGAGTGTCC 58.990 52.381 9.46 0.00 44.83 4.02
182 183 1.052617 TTGAATCACCGGAGTGTCCA 58.947 50.000 9.46 0.00 44.83 4.02
183 184 1.275666 TGAATCACCGGAGTGTCCAT 58.724 50.000 9.46 0.00 44.83 3.41
184 185 1.207089 TGAATCACCGGAGTGTCCATC 59.793 52.381 9.46 0.00 44.83 3.51
185 186 1.482593 GAATCACCGGAGTGTCCATCT 59.517 52.381 9.46 0.00 44.83 2.90
186 187 1.573108 ATCACCGGAGTGTCCATCTT 58.427 50.000 9.46 0.00 44.83 2.40
187 188 0.608130 TCACCGGAGTGTCCATCTTG 59.392 55.000 9.46 0.00 44.83 3.02
188 189 0.391661 CACCGGAGTGTCCATCTTGG 60.392 60.000 9.46 0.00 39.30 3.61
189 190 1.450312 CCGGAGTGTCCATCTTGGC 60.450 63.158 0.00 0.00 37.47 4.52
190 191 1.811266 CGGAGTGTCCATCTTGGCG 60.811 63.158 0.00 0.00 37.47 5.69
191 192 1.596934 GGAGTGTCCATCTTGGCGA 59.403 57.895 0.00 0.00 37.47 5.54
192 193 0.741221 GGAGTGTCCATCTTGGCGAC 60.741 60.000 0.00 0.00 37.47 5.19
193 194 1.078759 GAGTGTCCATCTTGGCGACG 61.079 60.000 0.00 0.00 37.47 5.12
194 195 2.434185 TGTCCATCTTGGCGACGC 60.434 61.111 12.43 12.43 37.47 5.19
205 206 3.389206 GCGACGCCAGATGAAGAC 58.611 61.111 9.14 0.00 0.00 3.01
206 207 1.446099 GCGACGCCAGATGAAGACA 60.446 57.895 9.14 0.00 0.00 3.41
207 208 1.687494 GCGACGCCAGATGAAGACAC 61.687 60.000 9.14 0.00 0.00 3.67
208 209 1.078759 CGACGCCAGATGAAGACACC 61.079 60.000 0.00 0.00 0.00 4.16
209 210 0.037326 GACGCCAGATGAAGACACCA 60.037 55.000 0.00 0.00 0.00 4.17
210 211 0.320771 ACGCCAGATGAAGACACCAC 60.321 55.000 0.00 0.00 0.00 4.16
211 212 0.036952 CGCCAGATGAAGACACCACT 60.037 55.000 0.00 0.00 0.00 4.00
212 213 1.446907 GCCAGATGAAGACACCACTG 58.553 55.000 0.00 0.00 0.00 3.66
213 214 1.446907 CCAGATGAAGACACCACTGC 58.553 55.000 0.00 0.00 0.00 4.40
214 215 1.073964 CAGATGAAGACACCACTGCG 58.926 55.000 0.00 0.00 0.00 5.18
215 216 0.681733 AGATGAAGACACCACTGCGT 59.318 50.000 0.00 0.00 0.00 5.24
216 217 0.792640 GATGAAGACACCACTGCGTG 59.207 55.000 2.27 2.27 39.75 5.34
218 219 0.809636 TGAAGACACCACTGCGTGTG 60.810 55.000 5.91 1.40 46.85 3.82
219 220 0.529773 GAAGACACCACTGCGTGTGA 60.530 55.000 10.67 0.00 46.85 3.58
220 221 0.530650 AAGACACCACTGCGTGTGAG 60.531 55.000 10.67 6.05 46.85 3.51
221 222 1.956170 GACACCACTGCGTGTGAGG 60.956 63.158 10.67 5.45 46.85 3.86
226 227 3.870955 ACTGCGTGTGAGGGAGAA 58.129 55.556 0.00 0.00 0.00 2.87
227 228 1.668294 ACTGCGTGTGAGGGAGAAG 59.332 57.895 0.00 0.00 0.00 2.85
228 229 1.115930 ACTGCGTGTGAGGGAGAAGT 61.116 55.000 0.00 0.00 0.00 3.01
229 230 0.389166 CTGCGTGTGAGGGAGAAGTC 60.389 60.000 0.00 0.00 0.00 3.01
230 231 1.079750 GCGTGTGAGGGAGAAGTCC 60.080 63.158 0.00 0.00 43.05 3.85
238 239 4.097361 GGAGAAGTCCCCACCGCC 62.097 72.222 0.00 0.00 36.76 6.13
239 240 4.452733 GAGAAGTCCCCACCGCCG 62.453 72.222 0.00 0.00 0.00 6.46
249 250 3.499737 CACCGCCGCCTTCACATC 61.500 66.667 0.00 0.00 0.00 3.06
250 251 4.778143 ACCGCCGCCTTCACATCC 62.778 66.667 0.00 0.00 0.00 3.51
252 253 4.776322 CGCCGCCTTCACATCCCA 62.776 66.667 0.00 0.00 0.00 4.37
253 254 3.134127 GCCGCCTTCACATCCCAC 61.134 66.667 0.00 0.00 0.00 4.61
254 255 2.819595 CCGCCTTCACATCCCACG 60.820 66.667 0.00 0.00 0.00 4.94
255 256 2.819595 CGCCTTCACATCCCACGG 60.820 66.667 0.00 0.00 0.00 4.94
256 257 3.134127 GCCTTCACATCCCACGGC 61.134 66.667 0.00 0.00 0.00 5.68
257 258 2.671070 CCTTCACATCCCACGGCT 59.329 61.111 0.00 0.00 0.00 5.52
258 259 1.450312 CCTTCACATCCCACGGCTC 60.450 63.158 0.00 0.00 0.00 4.70
259 260 1.811266 CTTCACATCCCACGGCTCG 60.811 63.158 0.00 0.00 0.00 5.03
260 261 3.309436 TTCACATCCCACGGCTCGG 62.309 63.158 0.00 0.00 0.00 4.63
261 262 4.838152 CACATCCCACGGCTCGGG 62.838 72.222 1.75 1.75 46.03 5.14
279 280 3.479269 CTTCGCCGGCGTGAACTC 61.479 66.667 44.16 4.88 40.74 3.01
309 310 4.496670 CGAATCACCGGAGTGTCC 57.503 61.111 9.46 0.00 44.83 4.02
310 311 1.589630 CGAATCACCGGAGTGTCCA 59.410 57.895 9.46 0.00 44.83 4.02
311 312 0.175760 CGAATCACCGGAGTGTCCAT 59.824 55.000 9.46 0.00 44.83 3.41
312 313 1.802880 CGAATCACCGGAGTGTCCATC 60.803 57.143 9.46 0.00 44.83 3.51
313 314 1.482593 GAATCACCGGAGTGTCCATCT 59.517 52.381 9.46 0.00 44.83 2.90
314 315 1.573108 ATCACCGGAGTGTCCATCTT 58.427 50.000 9.46 0.00 44.83 2.40
315 316 0.608130 TCACCGGAGTGTCCATCTTG 59.392 55.000 9.46 0.00 44.83 3.02
316 317 0.391661 CACCGGAGTGTCCATCTTGG 60.392 60.000 9.46 0.00 39.30 3.61
317 318 1.450312 CCGGAGTGTCCATCTTGGC 60.450 63.158 0.00 0.00 37.47 4.52
318 319 1.811266 CGGAGTGTCCATCTTGGCG 60.811 63.158 0.00 0.00 37.47 5.69
319 320 1.596934 GGAGTGTCCATCTTGGCGA 59.403 57.895 0.00 0.00 37.47 5.54
320 321 0.741221 GGAGTGTCCATCTTGGCGAC 60.741 60.000 0.00 0.00 37.47 5.19
321 322 1.078759 GAGTGTCCATCTTGGCGACG 61.079 60.000 0.00 0.00 37.47 5.12
322 323 2.434185 TGTCCATCTTGGCGACGC 60.434 61.111 12.43 12.43 37.47 5.19
333 334 4.745549 GCGACGCCAAATGAAGAC 57.254 55.556 9.14 0.00 0.00 3.01
334 335 1.866237 GCGACGCCAAATGAAGACA 59.134 52.632 9.14 0.00 0.00 3.41
335 336 0.452784 GCGACGCCAAATGAAGACAC 60.453 55.000 9.14 0.00 0.00 3.67
336 337 0.165944 CGACGCCAAATGAAGACACC 59.834 55.000 0.00 0.00 0.00 4.16
337 338 1.234821 GACGCCAAATGAAGACACCA 58.765 50.000 0.00 0.00 0.00 4.17
338 339 0.951558 ACGCCAAATGAAGACACCAC 59.048 50.000 0.00 0.00 0.00 4.16
339 340 0.240945 CGCCAAATGAAGACACCACC 59.759 55.000 0.00 0.00 0.00 4.61
340 341 0.240945 GCCAAATGAAGACACCACCG 59.759 55.000 0.00 0.00 0.00 4.94
341 342 0.240945 CCAAATGAAGACACCACCGC 59.759 55.000 0.00 0.00 0.00 5.68
342 343 0.110238 CAAATGAAGACACCACCGCG 60.110 55.000 0.00 0.00 0.00 6.46
343 344 1.852067 AAATGAAGACACCACCGCGC 61.852 55.000 0.00 0.00 0.00 6.86
380 381 4.776322 CGCCGCCTTCACATCCCA 62.776 66.667 0.00 0.00 0.00 4.37
381 382 3.134127 GCCGCCTTCACATCCCAC 61.134 66.667 0.00 0.00 0.00 4.61
382 383 2.819595 CCGCCTTCACATCCCACG 60.820 66.667 0.00 0.00 0.00 4.94
383 384 2.819595 CGCCTTCACATCCCACGG 60.820 66.667 0.00 0.00 0.00 4.94
384 385 3.134127 GCCTTCACATCCCACGGC 61.134 66.667 0.00 0.00 0.00 5.68
385 386 2.438434 CCTTCACATCCCACGGCC 60.438 66.667 0.00 0.00 0.00 6.13
386 387 2.438434 CTTCACATCCCACGGCCC 60.438 66.667 0.00 0.00 0.00 5.80
387 388 4.402528 TTCACATCCCACGGCCCG 62.403 66.667 0.00 0.00 0.00 6.13
405 406 4.090057 GGCTTCGCTGGCGTGAAC 62.090 66.667 14.55 3.69 40.74 3.18
406 407 3.044305 GCTTCGCTGGCGTGAACT 61.044 61.111 14.55 0.00 40.74 3.01
407 408 3.016474 GCTTCGCTGGCGTGAACTC 62.016 63.158 14.55 0.00 40.74 3.01
408 409 2.720758 CTTCGCTGGCGTGAACTCG 61.721 63.158 14.55 0.00 40.74 4.18
409 410 4.717629 TCGCTGGCGTGAACTCGG 62.718 66.667 14.55 0.00 40.74 4.63
430 431 3.844090 GCAGCGGGAGGGAGAGAC 61.844 72.222 0.00 0.00 0.00 3.36
431 432 2.043450 CAGCGGGAGGGAGAGACT 60.043 66.667 0.00 0.00 0.00 3.24
432 433 2.043450 AGCGGGAGGGAGAGACTG 60.043 66.667 0.00 0.00 0.00 3.51
433 434 3.151022 GCGGGAGGGAGAGACTGG 61.151 72.222 0.00 0.00 0.00 4.00
434 435 2.443016 CGGGAGGGAGAGACTGGG 60.443 72.222 0.00 0.00 0.00 4.45
435 436 2.041405 GGGAGGGAGAGACTGGGG 60.041 72.222 0.00 0.00 0.00 4.96
436 437 2.766229 GGAGGGAGAGACTGGGGC 60.766 72.222 0.00 0.00 0.00 5.80
437 438 2.039624 GAGGGAGAGACTGGGGCA 59.960 66.667 0.00 0.00 0.00 5.36
438 439 1.613630 GAGGGAGAGACTGGGGCAA 60.614 63.158 0.00 0.00 0.00 4.52
439 440 1.614824 AGGGAGAGACTGGGGCAAG 60.615 63.158 0.00 0.00 0.00 4.01
440 441 2.674220 GGGAGAGACTGGGGCAAGG 61.674 68.421 0.00 0.00 0.00 3.61
441 442 1.613630 GGAGAGACTGGGGCAAGGA 60.614 63.158 0.00 0.00 0.00 3.36
442 443 1.621672 GGAGAGACTGGGGCAAGGAG 61.622 65.000 0.00 0.00 0.00 3.69
443 444 1.614824 AGAGACTGGGGCAAGGAGG 60.615 63.158 0.00 0.00 0.00 4.30
444 445 1.920835 GAGACTGGGGCAAGGAGGT 60.921 63.158 0.00 0.00 0.00 3.85
445 446 1.904990 GAGACTGGGGCAAGGAGGTC 61.905 65.000 0.00 0.00 0.00 3.85
446 447 1.920835 GACTGGGGCAAGGAGGTCT 60.921 63.158 0.00 0.00 0.00 3.85
447 448 0.617820 GACTGGGGCAAGGAGGTCTA 60.618 60.000 0.00 0.00 0.00 2.59
448 449 0.618968 ACTGGGGCAAGGAGGTCTAG 60.619 60.000 0.00 0.00 0.00 2.43
449 450 1.306997 TGGGGCAAGGAGGTCTAGG 60.307 63.158 0.00 0.00 0.00 3.02
450 451 2.073101 GGGGCAAGGAGGTCTAGGG 61.073 68.421 0.00 0.00 0.00 3.53
451 452 2.747443 GGGCAAGGAGGTCTAGGGC 61.747 68.421 0.00 0.00 0.00 5.19
452 453 2.501610 GCAAGGAGGTCTAGGGCG 59.498 66.667 0.00 0.00 0.00 6.13
453 454 2.501610 CAAGGAGGTCTAGGGCGC 59.498 66.667 0.00 0.00 0.00 6.53
454 455 2.038975 AAGGAGGTCTAGGGCGCA 59.961 61.111 10.83 0.00 0.00 6.09
455 456 2.060980 AAGGAGGTCTAGGGCGCAG 61.061 63.158 10.83 0.00 0.00 5.18
476 477 4.570663 CGCGATCTCCCCCGTGTC 62.571 72.222 0.00 0.00 0.00 3.67
477 478 4.570663 GCGATCTCCCCCGTGTCG 62.571 72.222 0.00 0.00 35.56 4.35
478 479 2.827190 CGATCTCCCCCGTGTCGA 60.827 66.667 0.00 0.00 34.46 4.20
479 480 2.835705 CGATCTCCCCCGTGTCGAG 61.836 68.421 0.00 0.00 34.46 4.04
480 481 2.442272 ATCTCCCCCGTGTCGAGG 60.442 66.667 0.00 0.00 0.00 4.63
481 482 3.298300 ATCTCCCCCGTGTCGAGGT 62.298 63.158 0.00 0.00 0.00 3.85
482 483 3.450115 CTCCCCCGTGTCGAGGTC 61.450 72.222 0.00 0.00 0.00 3.85
489 490 4.353437 GTGTCGAGGTCGGGCGTT 62.353 66.667 0.00 0.00 40.29 4.84
490 491 4.047059 TGTCGAGGTCGGGCGTTC 62.047 66.667 0.00 0.00 40.29 3.95
491 492 4.790861 GTCGAGGTCGGGCGTTCC 62.791 72.222 0.00 0.00 40.29 3.62
493 494 4.796231 CGAGGTCGGGCGTTCCTG 62.796 72.222 0.00 0.00 40.23 3.86
494 495 3.692406 GAGGTCGGGCGTTCCTGT 61.692 66.667 0.00 0.00 39.81 4.00
495 496 3.236003 GAGGTCGGGCGTTCCTGTT 62.236 63.158 0.00 0.00 39.81 3.16
496 497 2.281276 GGTCGGGCGTTCCTGTTT 60.281 61.111 0.00 0.00 39.81 2.83
497 498 1.895231 GGTCGGGCGTTCCTGTTTT 60.895 57.895 0.00 0.00 39.81 2.43
498 499 1.281656 GTCGGGCGTTCCTGTTTTG 59.718 57.895 0.00 0.00 39.81 2.44
499 500 1.894756 TCGGGCGTTCCTGTTTTGG 60.895 57.895 0.00 0.00 39.81 3.28
500 501 2.338620 GGGCGTTCCTGTTTTGGC 59.661 61.111 0.00 0.00 0.00 4.52
501 502 2.494530 GGGCGTTCCTGTTTTGGCA 61.495 57.895 0.00 0.00 0.00 4.92
502 503 1.439644 GGCGTTCCTGTTTTGGCAA 59.560 52.632 0.00 0.00 0.00 4.52
503 504 0.179097 GGCGTTCCTGTTTTGGCAAA 60.179 50.000 8.93 8.93 0.00 3.68
504 505 1.540146 GGCGTTCCTGTTTTGGCAAAT 60.540 47.619 14.29 0.00 0.00 2.32
505 506 1.792367 GCGTTCCTGTTTTGGCAAATC 59.208 47.619 14.29 13.51 0.00 2.17
506 507 2.545742 GCGTTCCTGTTTTGGCAAATCT 60.546 45.455 14.29 0.00 0.00 2.40
507 508 3.308530 CGTTCCTGTTTTGGCAAATCTC 58.691 45.455 14.29 8.22 0.00 2.75
508 509 3.653344 GTTCCTGTTTTGGCAAATCTCC 58.347 45.455 14.29 3.29 0.00 3.71
509 510 2.247358 TCCTGTTTTGGCAAATCTCCC 58.753 47.619 14.29 0.87 0.00 4.30
510 511 2.158325 TCCTGTTTTGGCAAATCTCCCT 60.158 45.455 14.29 0.00 0.00 4.20
511 512 2.634453 CCTGTTTTGGCAAATCTCCCTT 59.366 45.455 14.29 0.00 0.00 3.95
512 513 3.071457 CCTGTTTTGGCAAATCTCCCTTT 59.929 43.478 14.29 0.00 0.00 3.11
513 514 4.444733 CCTGTTTTGGCAAATCTCCCTTTT 60.445 41.667 14.29 0.00 0.00 2.27
514 515 5.109500 TGTTTTGGCAAATCTCCCTTTTT 57.891 34.783 14.29 0.00 0.00 1.94
535 536 6.911250 TTTTAGGGGAGAATTTCACTTTCC 57.089 37.500 0.00 0.00 0.00 3.13
536 537 5.860648 TTAGGGGAGAATTTCACTTTCCT 57.139 39.130 0.00 4.69 0.00 3.36
537 538 4.039603 AGGGGAGAATTTCACTTTCCTG 57.960 45.455 0.00 0.00 0.00 3.86
538 539 3.092301 GGGGAGAATTTCACTTTCCTGG 58.908 50.000 0.00 0.00 0.00 4.45
539 540 2.493675 GGGAGAATTTCACTTTCCTGGC 59.506 50.000 0.00 0.00 0.00 4.85
540 541 2.493675 GGAGAATTTCACTTTCCTGGCC 59.506 50.000 0.00 0.00 0.00 5.36
541 542 3.425659 GAGAATTTCACTTTCCTGGCCT 58.574 45.455 3.32 0.00 0.00 5.19
542 543 3.425659 AGAATTTCACTTTCCTGGCCTC 58.574 45.455 3.32 0.00 0.00 4.70
543 544 3.075134 AGAATTTCACTTTCCTGGCCTCT 59.925 43.478 3.32 0.00 0.00 3.69
544 545 2.276732 TTTCACTTTCCTGGCCTCTG 57.723 50.000 3.32 0.00 0.00 3.35
545 546 0.250901 TTCACTTTCCTGGCCTCTGC 60.251 55.000 3.32 0.00 0.00 4.26
546 547 1.073722 CACTTTCCTGGCCTCTGCA 59.926 57.895 3.32 0.00 40.13 4.41
547 548 1.073897 ACTTTCCTGGCCTCTGCAC 59.926 57.895 3.32 0.00 40.13 4.57
548 549 1.676967 CTTTCCTGGCCTCTGCACC 60.677 63.158 3.32 0.00 40.13 5.01
549 550 2.416107 CTTTCCTGGCCTCTGCACCA 62.416 60.000 3.32 0.00 40.13 4.17
550 551 2.005606 TTTCCTGGCCTCTGCACCAA 62.006 55.000 3.32 0.00 40.13 3.67
551 552 2.674380 CCTGGCCTCTGCACCAAC 60.674 66.667 3.32 0.00 40.13 3.77
552 553 2.433446 CTGGCCTCTGCACCAACT 59.567 61.111 3.32 0.00 40.13 3.16
553 554 1.679311 CTGGCCTCTGCACCAACTA 59.321 57.895 3.32 0.00 40.13 2.24
554 555 0.392193 CTGGCCTCTGCACCAACTAG 60.392 60.000 3.32 0.00 40.13 2.57
555 556 0.835971 TGGCCTCTGCACCAACTAGA 60.836 55.000 3.32 0.00 40.13 2.43
556 557 0.324943 GGCCTCTGCACCAACTAGAA 59.675 55.000 0.00 0.00 40.13 2.10
557 558 1.271379 GGCCTCTGCACCAACTAGAAA 60.271 52.381 0.00 0.00 40.13 2.52
558 559 2.504367 GCCTCTGCACCAACTAGAAAA 58.496 47.619 0.00 0.00 37.47 2.29
559 560 3.084786 GCCTCTGCACCAACTAGAAAAT 58.915 45.455 0.00 0.00 37.47 1.82
560 561 3.119708 GCCTCTGCACCAACTAGAAAATG 60.120 47.826 0.00 0.00 37.47 2.32
561 562 3.119708 CCTCTGCACCAACTAGAAAATGC 60.120 47.826 0.00 1.73 0.00 3.56
562 563 3.485394 TCTGCACCAACTAGAAAATGCA 58.515 40.909 13.20 13.20 40.57 3.96
563 564 4.081406 TCTGCACCAACTAGAAAATGCAT 58.919 39.130 13.91 0.00 41.83 3.96
564 565 5.252547 TCTGCACCAACTAGAAAATGCATA 58.747 37.500 0.00 7.15 41.83 3.14
565 566 5.123820 TCTGCACCAACTAGAAAATGCATAC 59.876 40.000 0.00 0.00 41.83 2.39
566 567 4.142708 TGCACCAACTAGAAAATGCATACG 60.143 41.667 0.00 0.00 38.11 3.06
567 568 4.094294 GCACCAACTAGAAAATGCATACGA 59.906 41.667 0.00 0.00 33.27 3.43
568 569 5.560148 CACCAACTAGAAAATGCATACGAC 58.440 41.667 0.00 0.00 0.00 4.34
569 570 4.634443 ACCAACTAGAAAATGCATACGACC 59.366 41.667 0.00 0.00 0.00 4.79
570 571 4.876107 CCAACTAGAAAATGCATACGACCT 59.124 41.667 0.00 0.00 0.00 3.85
571 572 5.354234 CCAACTAGAAAATGCATACGACCTT 59.646 40.000 0.00 0.00 0.00 3.50
572 573 6.128007 CCAACTAGAAAATGCATACGACCTTT 60.128 38.462 0.00 0.00 0.00 3.11
573 574 7.305474 CAACTAGAAAATGCATACGACCTTTT 58.695 34.615 0.00 0.00 0.00 2.27
574 575 8.447833 CAACTAGAAAATGCATACGACCTTTTA 58.552 33.333 0.00 0.00 0.00 1.52
575 576 8.556213 ACTAGAAAATGCATACGACCTTTTAA 57.444 30.769 0.00 0.00 0.00 1.52
576 577 8.665685 ACTAGAAAATGCATACGACCTTTTAAG 58.334 33.333 0.00 0.39 0.00 1.85
577 578 7.448748 AGAAAATGCATACGACCTTTTAAGT 57.551 32.000 0.00 0.00 0.00 2.24
578 579 8.556213 AGAAAATGCATACGACCTTTTAAGTA 57.444 30.769 0.00 0.00 0.00 2.24
579 580 9.174166 AGAAAATGCATACGACCTTTTAAGTAT 57.826 29.630 0.00 0.00 0.00 2.12
580 581 9.221775 GAAAATGCATACGACCTTTTAAGTATG 57.778 33.333 0.00 9.35 45.34 2.39
581 582 8.500753 AAATGCATACGACCTTTTAAGTATGA 57.499 30.769 15.84 4.60 45.38 2.15
582 583 7.715265 ATGCATACGACCTTTTAAGTATGAG 57.285 36.000 15.84 0.00 45.38 2.90
583 584 6.636705 TGCATACGACCTTTTAAGTATGAGT 58.363 36.000 15.84 0.00 45.38 3.41
584 585 7.774134 TGCATACGACCTTTTAAGTATGAGTA 58.226 34.615 15.84 2.09 45.38 2.59
585 586 7.703621 TGCATACGACCTTTTAAGTATGAGTAC 59.296 37.037 15.84 0.00 45.38 2.73
586 587 7.919621 GCATACGACCTTTTAAGTATGAGTACT 59.080 37.037 15.84 0.00 45.38 2.73
589 590 7.994194 ACGACCTTTTAAGTATGAGTACTAGG 58.006 38.462 0.00 0.00 40.24 3.02
590 591 7.831193 ACGACCTTTTAAGTATGAGTACTAGGA 59.169 37.037 7.78 0.00 40.24 2.94
591 592 8.848182 CGACCTTTTAAGTATGAGTACTAGGAT 58.152 37.037 7.78 0.00 40.24 3.24
603 604 8.943909 ATGAGTACTAGGATTTTTAAACTCGG 57.056 34.615 0.00 0.00 35.90 4.63
604 605 7.899973 TGAGTACTAGGATTTTTAAACTCGGT 58.100 34.615 0.00 0.00 35.90 4.69
605 606 8.370182 TGAGTACTAGGATTTTTAAACTCGGTT 58.630 33.333 0.00 0.00 35.90 4.44
606 607 9.860898 GAGTACTAGGATTTTTAAACTCGGTTA 57.139 33.333 0.00 0.00 0.00 2.85
607 608 9.645059 AGTACTAGGATTTTTAAACTCGGTTAC 57.355 33.333 0.00 0.00 0.00 2.50
608 609 9.423061 GTACTAGGATTTTTAAACTCGGTTACA 57.577 33.333 0.00 0.00 0.00 2.41
609 610 8.315391 ACTAGGATTTTTAAACTCGGTTACAC 57.685 34.615 0.00 0.00 0.00 2.90
610 611 7.933033 ACTAGGATTTTTAAACTCGGTTACACA 59.067 33.333 0.00 0.00 0.00 3.72
611 612 7.754851 AGGATTTTTAAACTCGGTTACACAT 57.245 32.000 0.00 0.00 0.00 3.21
612 613 7.813645 AGGATTTTTAAACTCGGTTACACATC 58.186 34.615 0.00 0.00 0.00 3.06
613 614 6.739550 GGATTTTTAAACTCGGTTACACATCG 59.260 38.462 0.00 0.00 0.00 3.84
614 615 6.841443 TTTTTAAACTCGGTTACACATCGA 57.159 33.333 0.00 0.00 0.00 3.59
617 618 2.959275 CTCGGTTACACATCGAGCC 58.041 57.895 0.00 0.00 42.70 4.70
618 619 0.456221 CTCGGTTACACATCGAGCCT 59.544 55.000 0.00 0.00 42.70 4.58
619 620 1.674441 CTCGGTTACACATCGAGCCTA 59.326 52.381 0.00 0.00 42.70 3.93
620 621 1.674441 TCGGTTACACATCGAGCCTAG 59.326 52.381 0.00 0.00 0.00 3.02
621 622 1.404391 CGGTTACACATCGAGCCTAGT 59.596 52.381 0.00 0.00 0.00 2.57
622 623 2.541178 CGGTTACACATCGAGCCTAGTC 60.541 54.545 0.00 0.00 0.00 2.59
623 624 2.223758 GGTTACACATCGAGCCTAGTCC 60.224 54.545 0.00 0.00 0.00 3.85
624 625 2.688958 GTTACACATCGAGCCTAGTCCT 59.311 50.000 0.00 0.00 0.00 3.85
625 626 1.394618 ACACATCGAGCCTAGTCCTC 58.605 55.000 0.00 0.00 0.00 3.71
626 627 1.341089 ACACATCGAGCCTAGTCCTCA 60.341 52.381 8.00 0.00 0.00 3.86
627 628 1.751351 CACATCGAGCCTAGTCCTCAA 59.249 52.381 8.00 0.00 0.00 3.02
628 629 2.363680 CACATCGAGCCTAGTCCTCAAT 59.636 50.000 8.00 0.00 0.00 2.57
629 630 3.570125 CACATCGAGCCTAGTCCTCAATA 59.430 47.826 8.00 0.00 0.00 1.90
630 631 4.038042 CACATCGAGCCTAGTCCTCAATAA 59.962 45.833 8.00 0.00 0.00 1.40
631 632 4.649674 ACATCGAGCCTAGTCCTCAATAAA 59.350 41.667 8.00 0.00 0.00 1.40
632 633 5.305644 ACATCGAGCCTAGTCCTCAATAAAT 59.694 40.000 8.00 0.00 0.00 1.40
633 634 5.201713 TCGAGCCTAGTCCTCAATAAATG 57.798 43.478 8.00 0.00 0.00 2.32
634 635 3.743396 CGAGCCTAGTCCTCAATAAATGC 59.257 47.826 8.00 0.00 0.00 3.56
635 636 3.733337 AGCCTAGTCCTCAATAAATGCG 58.267 45.455 0.00 0.00 0.00 4.73
636 637 3.134804 AGCCTAGTCCTCAATAAATGCGT 59.865 43.478 0.00 0.00 0.00 5.24
637 638 3.248602 GCCTAGTCCTCAATAAATGCGTG 59.751 47.826 0.00 0.00 0.00 5.34
638 639 4.693283 CCTAGTCCTCAATAAATGCGTGA 58.307 43.478 0.00 0.00 0.00 4.35
639 640 4.747108 CCTAGTCCTCAATAAATGCGTGAG 59.253 45.833 0.00 0.00 38.81 3.51
640 641 4.207891 AGTCCTCAATAAATGCGTGAGT 57.792 40.909 0.00 0.00 37.64 3.41
641 642 5.339008 AGTCCTCAATAAATGCGTGAGTA 57.661 39.130 0.00 0.00 37.64 2.59
642 643 5.109903 AGTCCTCAATAAATGCGTGAGTAC 58.890 41.667 0.00 0.00 37.64 2.73
643 644 4.270325 GTCCTCAATAAATGCGTGAGTACC 59.730 45.833 0.00 0.00 37.64 3.34
644 645 4.161565 TCCTCAATAAATGCGTGAGTACCT 59.838 41.667 0.00 0.00 37.64 3.08
645 646 5.361571 TCCTCAATAAATGCGTGAGTACCTA 59.638 40.000 0.00 0.00 37.64 3.08
646 647 6.046593 CCTCAATAAATGCGTGAGTACCTAA 58.953 40.000 0.00 0.00 37.64 2.69
647 648 6.537301 CCTCAATAAATGCGTGAGTACCTAAA 59.463 38.462 0.00 0.00 37.64 1.85
648 649 7.065324 CCTCAATAAATGCGTGAGTACCTAAAA 59.935 37.037 0.00 0.00 37.64 1.52
649 650 8.325421 TCAATAAATGCGTGAGTACCTAAAAA 57.675 30.769 0.00 0.00 0.00 1.94
670 671 6.579666 AAAACCCGGTCCTTAAGAATAAAC 57.420 37.500 3.36 0.00 0.00 2.01
671 672 4.226427 ACCCGGTCCTTAAGAATAAACC 57.774 45.455 3.36 2.91 0.00 3.27
672 673 3.054139 ACCCGGTCCTTAAGAATAAACCC 60.054 47.826 3.36 0.00 0.00 4.11
673 674 3.054213 CCCGGTCCTTAAGAATAAACCCA 60.054 47.826 3.36 0.00 0.00 4.51
674 675 4.568169 CCCGGTCCTTAAGAATAAACCCAA 60.568 45.833 3.36 0.00 0.00 4.12
675 676 5.011586 CCGGTCCTTAAGAATAAACCCAAA 58.988 41.667 3.36 0.00 0.00 3.28
676 677 5.477637 CCGGTCCTTAAGAATAAACCCAAAA 59.522 40.000 3.36 0.00 0.00 2.44
677 678 6.153851 CCGGTCCTTAAGAATAAACCCAAAAT 59.846 38.462 3.36 0.00 0.00 1.82
678 679 7.255569 CGGTCCTTAAGAATAAACCCAAAATC 58.744 38.462 3.36 0.00 0.00 2.17
679 680 7.122204 CGGTCCTTAAGAATAAACCCAAAATCT 59.878 37.037 3.36 0.00 0.00 2.40
680 681 8.467598 GGTCCTTAAGAATAAACCCAAAATCTC 58.532 37.037 3.36 0.00 0.00 2.75
681 682 9.020731 GTCCTTAAGAATAAACCCAAAATCTCA 57.979 33.333 3.36 0.00 0.00 3.27
682 683 9.594936 TCCTTAAGAATAAACCCAAAATCTCAA 57.405 29.630 3.36 0.00 0.00 3.02
687 688 9.546428 AAGAATAAACCCAAAATCTCAAAAGTG 57.454 29.630 0.00 0.00 0.00 3.16
688 689 8.150296 AGAATAAACCCAAAATCTCAAAAGTGG 58.850 33.333 0.00 0.00 0.00 4.00
689 690 5.948742 AAACCCAAAATCTCAAAAGTGGA 57.051 34.783 0.00 0.00 0.00 4.02
690 691 4.937201 ACCCAAAATCTCAAAAGTGGAC 57.063 40.909 0.00 0.00 0.00 4.02
691 692 3.317993 ACCCAAAATCTCAAAAGTGGACG 59.682 43.478 0.00 0.00 0.00 4.79
692 693 3.308530 CCAAAATCTCAAAAGTGGACGC 58.691 45.455 0.00 0.00 0.00 5.19
693 694 2.969443 AAATCTCAAAAGTGGACGCG 57.031 45.000 3.53 3.53 0.00 6.01
694 695 0.517316 AATCTCAAAAGTGGACGCGC 59.483 50.000 5.73 0.00 0.00 6.86
695 696 0.602638 ATCTCAAAAGTGGACGCGCA 60.603 50.000 5.73 0.00 0.00 6.09
696 697 1.082756 CTCAAAAGTGGACGCGCAC 60.083 57.895 5.73 7.50 0.00 5.34
697 698 1.498865 CTCAAAAGTGGACGCGCACT 61.499 55.000 12.80 12.80 0.00 4.40
698 699 1.092921 TCAAAAGTGGACGCGCACTT 61.093 50.000 21.56 21.56 42.73 3.16
699 700 3.821995 AAAGTGGACGCGCACTTT 58.178 50.000 28.07 28.07 44.07 2.66
700 701 2.103410 AAAGTGGACGCGCACTTTT 58.897 47.368 28.07 17.56 45.89 2.27
701 702 0.454196 AAAGTGGACGCGCACTTTTT 59.546 45.000 28.07 15.12 45.89 1.94
723 724 1.128507 GCGAGCGATTTCAATCACACA 59.871 47.619 0.00 0.00 35.11 3.72
787 789 2.362369 CGTCATCCCACTCCAGCCT 61.362 63.158 0.00 0.00 0.00 4.58
823 826 0.898320 ATCCACCCTGTTGTCTCTCG 59.102 55.000 0.00 0.00 0.00 4.04
826 829 0.034059 CACCCTGTTGTCTCTCGCTT 59.966 55.000 0.00 0.00 0.00 4.68
956 973 4.499116 CCCCGAGATCCCCCACCT 62.499 72.222 0.00 0.00 0.00 4.00
1048 1065 0.828343 GTCCCTCCATCCCCTCTACG 60.828 65.000 0.00 0.00 0.00 3.51
1066 1083 2.915659 ACGGTGAAGACGAGGCCA 60.916 61.111 5.01 0.00 34.93 5.36
1085 1102 2.972589 ATAGCACTCGCCTCCCCCAT 62.973 60.000 0.00 0.00 39.83 4.00
1161 1178 2.190843 CACCACCACGTGAACCCA 59.809 61.111 19.30 0.00 35.23 4.51
1183 1200 2.989639 CCTCCTCCGCCATTGACA 59.010 61.111 0.00 0.00 0.00 3.58
1199 1216 0.319211 GACAACATCCACACGGACGA 60.319 55.000 0.00 0.00 46.79 4.20
1202 1219 1.750341 AACATCCACACGGACGACCA 61.750 55.000 4.48 0.00 46.79 4.02
1227 1244 0.535102 CACCAACACCACCACCTCTC 60.535 60.000 0.00 0.00 0.00 3.20
1264 1282 0.895530 CATGGAGGACGTGTAGGTGT 59.104 55.000 0.00 0.00 0.00 4.16
1288 1316 2.489275 GCGGCCTCTCCTCTCTCTG 61.489 68.421 0.00 0.00 0.00 3.35
1587 1629 0.455410 ACACATGCACCAACACACAC 59.545 50.000 0.00 0.00 0.00 3.82
1588 1630 0.591994 CACATGCACCAACACACACG 60.592 55.000 0.00 0.00 0.00 4.49
1592 1634 2.022623 CACCAACACACACGCACG 59.977 61.111 0.00 0.00 0.00 5.34
1633 1685 0.454285 GTGCACACACACACACACAC 60.454 55.000 13.17 0.00 46.61 3.82
1634 1686 1.225991 GCACACACACACACACACG 60.226 57.895 0.00 0.00 0.00 4.49
1635 1687 1.225991 CACACACACACACACACGC 60.226 57.895 0.00 0.00 0.00 5.34
1646 1706 2.021243 CACACGCACACACACACG 59.979 61.111 0.00 0.00 0.00 4.49
1698 1781 2.158682 ACACCCACATACACACACACAT 60.159 45.455 0.00 0.00 0.00 3.21
1738 1821 1.001924 CAACACATAGGCACGCAACAA 60.002 47.619 0.00 0.00 0.00 2.83
2078 2179 4.962995 ACAAGTATGAGCTAGCTAAGGGAA 59.037 41.667 19.38 0.00 0.00 3.97
2200 2328 3.578688 GTGTTCCTTCCATTGCAATGAC 58.421 45.455 35.47 24.90 38.70 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 4.492160 TCGACGGATCTGGTGCGC 62.492 66.667 6.47 0.00 46.57 6.09
12 13 2.202756 GGTCGACGGATCTGGTGC 60.203 66.667 9.92 0.00 0.00 5.01
13 14 2.494918 GGGTCGACGGATCTGGTG 59.505 66.667 9.92 0.00 0.00 4.17
14 15 3.138798 CGGGTCGACGGATCTGGT 61.139 66.667 9.92 0.00 0.00 4.00
15 16 4.570663 GCGGGTCGACGGATCTGG 62.571 72.222 9.92 0.00 29.81 3.86
16 17 4.570663 GGCGGGTCGACGGATCTG 62.571 72.222 9.92 0.00 32.47 2.90
17 18 2.898920 TTAGGCGGGTCGACGGATCT 62.899 60.000 9.92 7.34 41.28 2.75
18 19 2.403671 CTTAGGCGGGTCGACGGATC 62.404 65.000 9.92 0.00 41.28 3.36
19 20 2.440796 TTAGGCGGGTCGACGGAT 60.441 61.111 9.92 0.00 41.28 4.18
20 21 3.136123 CTTAGGCGGGTCGACGGA 61.136 66.667 9.92 0.00 41.28 4.69
21 22 4.867599 GCTTAGGCGGGTCGACGG 62.868 72.222 9.92 5.12 41.28 4.79
22 23 4.867599 GGCTTAGGCGGGTCGACG 62.868 72.222 9.92 0.00 41.28 5.12
23 24 4.525949 GGGCTTAGGCGGGTCGAC 62.526 72.222 7.13 7.13 39.81 4.20
25 26 3.809374 GATGGGCTTAGGCGGGTCG 62.809 68.421 0.00 0.00 39.81 4.79
26 27 1.119574 TAGATGGGCTTAGGCGGGTC 61.120 60.000 0.00 0.00 39.81 4.46
27 28 1.074775 TAGATGGGCTTAGGCGGGT 60.075 57.895 0.00 0.00 39.81 5.28
28 29 1.674057 CTAGATGGGCTTAGGCGGG 59.326 63.158 0.00 0.00 39.81 6.13
29 30 1.674057 CCTAGATGGGCTTAGGCGG 59.326 63.158 0.00 0.00 39.81 6.13
39 40 3.996124 CTCGCCGGGCCTAGATGG 61.996 72.222 14.55 0.00 39.35 3.51
40 41 2.219325 GATCTCGCCGGGCCTAGATG 62.219 65.000 27.26 9.21 31.05 2.90
41 42 1.979693 GATCTCGCCGGGCCTAGAT 60.980 63.158 24.13 24.13 32.75 1.98
42 43 1.775934 TAGATCTCGCCGGGCCTAGA 61.776 60.000 18.02 18.02 0.00 2.43
43 44 1.303398 TAGATCTCGCCGGGCCTAG 60.303 63.158 14.55 11.49 0.00 3.02
44 45 1.303398 CTAGATCTCGCCGGGCCTA 60.303 63.158 14.55 7.57 0.00 3.93
45 46 2.598985 CTAGATCTCGCCGGGCCT 60.599 66.667 14.55 6.71 0.00 5.19
46 47 3.686045 CCTAGATCTCGCCGGGCC 61.686 72.222 14.55 0.00 0.00 5.80
47 48 3.686045 CCCTAGATCTCGCCGGGC 61.686 72.222 9.54 9.54 0.00 6.13
48 49 0.538977 TAACCCTAGATCTCGCCGGG 60.539 60.000 2.18 14.47 40.79 5.73
49 50 1.269998 CTTAACCCTAGATCTCGCCGG 59.730 57.143 0.00 0.00 0.00 6.13
50 51 1.269998 CCTTAACCCTAGATCTCGCCG 59.730 57.143 0.00 0.00 0.00 6.46
51 52 1.001068 GCCTTAACCCTAGATCTCGCC 59.999 57.143 0.00 0.00 0.00 5.54
52 53 1.001068 GGCCTTAACCCTAGATCTCGC 59.999 57.143 0.00 0.00 0.00 5.03
53 54 2.036089 GTGGCCTTAACCCTAGATCTCG 59.964 54.545 3.32 0.00 0.00 4.04
54 55 2.369203 GGTGGCCTTAACCCTAGATCTC 59.631 54.545 3.32 0.00 0.00 2.75
55 56 2.409570 GGTGGCCTTAACCCTAGATCT 58.590 52.381 3.32 0.00 0.00 2.75
56 57 1.070289 CGGTGGCCTTAACCCTAGATC 59.930 57.143 3.32 0.00 33.88 2.75
57 58 1.129058 CGGTGGCCTTAACCCTAGAT 58.871 55.000 3.32 0.00 33.88 1.98
58 59 1.619807 GCGGTGGCCTTAACCCTAGA 61.620 60.000 3.32 0.00 33.88 2.43
59 60 1.153229 GCGGTGGCCTTAACCCTAG 60.153 63.158 3.32 0.00 33.88 3.02
60 61 2.992164 GCGGTGGCCTTAACCCTA 59.008 61.111 3.32 0.00 33.88 3.53
128 129 4.552365 ATCCCAGCGGCGGATGTG 62.552 66.667 9.78 0.00 38.74 3.21
129 130 4.241555 GATCCCAGCGGCGGATGT 62.242 66.667 13.22 0.00 40.33 3.06
130 131 4.996434 GGATCCCAGCGGCGGATG 62.996 72.222 13.22 2.02 40.33 3.51
139 140 4.864334 GGTGCAGCGGGATCCCAG 62.864 72.222 30.42 22.39 35.37 4.45
152 153 2.278142 GATTCAATGGCGCGGTGC 60.278 61.111 8.83 4.64 45.38 5.01
153 154 1.226379 GTGATTCAATGGCGCGGTG 60.226 57.895 8.83 0.00 0.00 4.94
154 155 2.406616 GGTGATTCAATGGCGCGGT 61.407 57.895 8.83 0.00 0.00 5.68
155 156 2.408835 GGTGATTCAATGGCGCGG 59.591 61.111 8.83 0.00 0.00 6.46
156 157 2.023181 CGGTGATTCAATGGCGCG 59.977 61.111 0.00 0.00 0.00 6.86
157 158 2.051804 CTCCGGTGATTCAATGGCGC 62.052 60.000 0.00 0.00 0.00 6.53
158 159 0.744414 ACTCCGGTGATTCAATGGCG 60.744 55.000 11.17 0.00 0.00 5.69
159 160 0.734889 CACTCCGGTGATTCAATGGC 59.265 55.000 11.17 0.00 45.61 4.40
160 161 2.009774 GACACTCCGGTGATTCAATGG 58.990 52.381 11.17 0.00 45.61 3.16
161 162 2.009774 GGACACTCCGGTGATTCAATG 58.990 52.381 11.17 0.00 45.61 2.82
162 163 1.628340 TGGACACTCCGGTGATTCAAT 59.372 47.619 11.17 0.00 45.61 2.57
163 164 1.052617 TGGACACTCCGGTGATTCAA 58.947 50.000 11.17 0.00 45.61 2.69
164 165 1.207089 GATGGACACTCCGGTGATTCA 59.793 52.381 11.17 3.30 45.61 2.57
165 166 1.482593 AGATGGACACTCCGGTGATTC 59.517 52.381 11.17 5.62 45.61 2.52
166 167 1.573108 AGATGGACACTCCGGTGATT 58.427 50.000 11.17 0.00 45.61 2.57
167 168 1.208052 CAAGATGGACACTCCGGTGAT 59.792 52.381 11.17 0.00 45.61 3.06
168 169 0.608130 CAAGATGGACACTCCGGTGA 59.392 55.000 11.17 0.00 45.61 4.02
170 171 1.983224 CCAAGATGGACACTCCGGT 59.017 57.895 0.00 0.00 40.96 5.28
171 172 1.450312 GCCAAGATGGACACTCCGG 60.450 63.158 0.00 0.00 40.96 5.14
172 173 1.811266 CGCCAAGATGGACACTCCG 60.811 63.158 0.00 0.00 40.96 4.63
173 174 0.741221 GTCGCCAAGATGGACACTCC 60.741 60.000 0.00 0.00 40.96 3.85
174 175 1.078759 CGTCGCCAAGATGGACACTC 61.079 60.000 0.00 0.00 40.96 3.51
175 176 1.079819 CGTCGCCAAGATGGACACT 60.080 57.895 0.00 0.00 40.96 3.55
176 177 2.740714 GCGTCGCCAAGATGGACAC 61.741 63.158 5.75 0.00 40.96 3.67
177 178 2.434185 GCGTCGCCAAGATGGACA 60.434 61.111 5.75 0.00 40.96 4.02
188 189 1.446099 TGTCTTCATCTGGCGTCGC 60.446 57.895 9.22 9.22 0.00 5.19
189 190 1.078759 GGTGTCTTCATCTGGCGTCG 61.079 60.000 0.00 0.00 0.00 5.12
190 191 0.037326 TGGTGTCTTCATCTGGCGTC 60.037 55.000 0.00 0.00 0.00 5.19
191 192 0.320771 GTGGTGTCTTCATCTGGCGT 60.321 55.000 0.00 0.00 0.00 5.68
192 193 0.036952 AGTGGTGTCTTCATCTGGCG 60.037 55.000 0.00 0.00 0.00 5.69
193 194 1.446907 CAGTGGTGTCTTCATCTGGC 58.553 55.000 0.00 0.00 0.00 4.85
194 195 1.446907 GCAGTGGTGTCTTCATCTGG 58.553 55.000 0.00 0.00 0.00 3.86
195 196 1.073964 CGCAGTGGTGTCTTCATCTG 58.926 55.000 0.00 0.00 0.00 2.90
196 197 0.681733 ACGCAGTGGTGTCTTCATCT 59.318 50.000 0.00 0.00 42.51 2.90
197 198 3.217242 ACGCAGTGGTGTCTTCATC 57.783 52.632 0.00 0.00 42.51 2.92
210 211 0.389166 GACTTCTCCCTCACACGCAG 60.389 60.000 0.00 0.00 0.00 5.18
211 212 1.666011 GACTTCTCCCTCACACGCA 59.334 57.895 0.00 0.00 0.00 5.24
212 213 1.079750 GGACTTCTCCCTCACACGC 60.080 63.158 0.00 0.00 0.00 5.34
221 222 4.097361 GGCGGTGGGGACTTCTCC 62.097 72.222 0.00 0.00 35.50 3.71
222 223 4.452733 CGGCGGTGGGGACTTCTC 62.453 72.222 0.00 0.00 0.00 2.87
232 233 3.499737 GATGTGAAGGCGGCGGTG 61.500 66.667 9.78 0.00 0.00 4.94
233 234 4.778143 GGATGTGAAGGCGGCGGT 62.778 66.667 9.78 0.00 0.00 5.68
235 236 4.776322 TGGGATGTGAAGGCGGCG 62.776 66.667 0.51 0.51 0.00 6.46
236 237 3.134127 GTGGGATGTGAAGGCGGC 61.134 66.667 0.00 0.00 0.00 6.53
237 238 2.819595 CGTGGGATGTGAAGGCGG 60.820 66.667 0.00 0.00 0.00 6.13
238 239 2.819595 CCGTGGGATGTGAAGGCG 60.820 66.667 0.00 0.00 0.00 5.52
239 240 3.134127 GCCGTGGGATGTGAAGGC 61.134 66.667 0.00 0.00 37.61 4.35
240 241 1.450312 GAGCCGTGGGATGTGAAGG 60.450 63.158 0.00 0.00 0.00 3.46
241 242 1.811266 CGAGCCGTGGGATGTGAAG 60.811 63.158 0.00 0.00 0.00 3.02
242 243 2.264480 CGAGCCGTGGGATGTGAA 59.736 61.111 0.00 0.00 0.00 3.18
243 244 3.770040 CCGAGCCGTGGGATGTGA 61.770 66.667 0.00 0.00 0.00 3.58
292 293 0.175760 ATGGACACTCCGGTGATTCG 59.824 55.000 11.17 0.00 45.61 3.34
293 294 1.482593 AGATGGACACTCCGGTGATTC 59.517 52.381 11.17 5.62 45.61 2.52
294 295 1.573108 AGATGGACACTCCGGTGATT 58.427 50.000 11.17 0.00 45.61 2.57
295 296 1.208052 CAAGATGGACACTCCGGTGAT 59.792 52.381 11.17 0.00 45.61 3.06
296 297 0.608130 CAAGATGGACACTCCGGTGA 59.392 55.000 11.17 0.00 45.61 4.02
298 299 1.983224 CCAAGATGGACACTCCGGT 59.017 57.895 0.00 0.00 40.96 5.28
299 300 1.450312 GCCAAGATGGACACTCCGG 60.450 63.158 0.00 0.00 40.96 5.14
300 301 1.811266 CGCCAAGATGGACACTCCG 60.811 63.158 0.00 0.00 40.96 4.63
301 302 0.741221 GTCGCCAAGATGGACACTCC 60.741 60.000 0.00 0.00 40.96 3.85
302 303 1.078759 CGTCGCCAAGATGGACACTC 61.079 60.000 0.00 0.00 40.96 3.51
303 304 1.079819 CGTCGCCAAGATGGACACT 60.080 57.895 0.00 0.00 40.96 3.55
304 305 2.740714 GCGTCGCCAAGATGGACAC 61.741 63.158 5.75 0.00 40.96 3.67
305 306 2.434185 GCGTCGCCAAGATGGACA 60.434 61.111 5.75 0.00 40.96 4.02
316 317 0.452784 GTGTCTTCATTTGGCGTCGC 60.453 55.000 9.22 9.22 0.00 5.19
317 318 0.165944 GGTGTCTTCATTTGGCGTCG 59.834 55.000 0.00 0.00 0.00 5.12
318 319 1.069227 GTGGTGTCTTCATTTGGCGTC 60.069 52.381 0.00 0.00 0.00 5.19
319 320 0.951558 GTGGTGTCTTCATTTGGCGT 59.048 50.000 0.00 0.00 0.00 5.68
320 321 0.240945 GGTGGTGTCTTCATTTGGCG 59.759 55.000 0.00 0.00 0.00 5.69
321 322 0.240945 CGGTGGTGTCTTCATTTGGC 59.759 55.000 0.00 0.00 0.00 4.52
322 323 0.240945 GCGGTGGTGTCTTCATTTGG 59.759 55.000 0.00 0.00 0.00 3.28
323 324 0.110238 CGCGGTGGTGTCTTCATTTG 60.110 55.000 0.00 0.00 0.00 2.32
324 325 1.852067 GCGCGGTGGTGTCTTCATTT 61.852 55.000 8.83 0.00 0.00 2.32
325 326 2.325082 GCGCGGTGGTGTCTTCATT 61.325 57.895 8.83 0.00 0.00 2.57
326 327 2.742372 GCGCGGTGGTGTCTTCAT 60.742 61.111 8.83 0.00 0.00 2.57
341 342 4.856607 GGACTTCTCCCTCGCGCG 62.857 72.222 26.76 26.76 0.00 6.86
363 364 4.776322 TGGGATGTGAAGGCGGCG 62.776 66.667 0.51 0.51 0.00 6.46
364 365 3.134127 GTGGGATGTGAAGGCGGC 61.134 66.667 0.00 0.00 0.00 6.53
365 366 2.819595 CGTGGGATGTGAAGGCGG 60.820 66.667 0.00 0.00 0.00 6.13
366 367 2.819595 CCGTGGGATGTGAAGGCG 60.820 66.667 0.00 0.00 0.00 5.52
367 368 3.134127 GCCGTGGGATGTGAAGGC 61.134 66.667 0.00 0.00 37.61 4.35
368 369 2.438434 GGCCGTGGGATGTGAAGG 60.438 66.667 0.00 0.00 0.00 3.46
369 370 2.438434 GGGCCGTGGGATGTGAAG 60.438 66.667 0.00 0.00 0.00 3.02
370 371 4.402528 CGGGCCGTGGGATGTGAA 62.403 66.667 19.97 0.00 0.00 3.18
390 391 2.720758 CGAGTTCACGCCAGCGAAG 61.721 63.158 20.32 10.75 42.83 3.79
391 392 2.733218 CGAGTTCACGCCAGCGAA 60.733 61.111 20.32 0.00 42.83 4.70
392 393 4.717629 CCGAGTTCACGCCAGCGA 62.718 66.667 20.32 0.00 42.83 4.93
413 414 3.844090 GTCTCTCCCTCCCGCTGC 61.844 72.222 0.00 0.00 0.00 5.25
414 415 2.043450 AGTCTCTCCCTCCCGCTG 60.043 66.667 0.00 0.00 0.00 5.18
415 416 2.043450 CAGTCTCTCCCTCCCGCT 60.043 66.667 0.00 0.00 0.00 5.52
416 417 3.151022 CCAGTCTCTCCCTCCCGC 61.151 72.222 0.00 0.00 0.00 6.13
417 418 2.443016 CCCAGTCTCTCCCTCCCG 60.443 72.222 0.00 0.00 0.00 5.14
418 419 2.041405 CCCCAGTCTCTCCCTCCC 60.041 72.222 0.00 0.00 0.00 4.30
419 420 2.766229 GCCCCAGTCTCTCCCTCC 60.766 72.222 0.00 0.00 0.00 4.30
420 421 1.613630 TTGCCCCAGTCTCTCCCTC 60.614 63.158 0.00 0.00 0.00 4.30
421 422 1.614824 CTTGCCCCAGTCTCTCCCT 60.615 63.158 0.00 0.00 0.00 4.20
422 423 2.674220 CCTTGCCCCAGTCTCTCCC 61.674 68.421 0.00 0.00 0.00 4.30
423 424 1.613630 TCCTTGCCCCAGTCTCTCC 60.614 63.158 0.00 0.00 0.00 3.71
424 425 1.621672 CCTCCTTGCCCCAGTCTCTC 61.622 65.000 0.00 0.00 0.00 3.20
425 426 1.614824 CCTCCTTGCCCCAGTCTCT 60.615 63.158 0.00 0.00 0.00 3.10
426 427 1.904990 GACCTCCTTGCCCCAGTCTC 61.905 65.000 0.00 0.00 0.00 3.36
427 428 1.920835 GACCTCCTTGCCCCAGTCT 60.921 63.158 0.00 0.00 0.00 3.24
428 429 0.617820 TAGACCTCCTTGCCCCAGTC 60.618 60.000 0.00 0.00 0.00 3.51
429 430 0.618968 CTAGACCTCCTTGCCCCAGT 60.619 60.000 0.00 0.00 0.00 4.00
430 431 1.341156 CCTAGACCTCCTTGCCCCAG 61.341 65.000 0.00 0.00 0.00 4.45
431 432 1.306997 CCTAGACCTCCTTGCCCCA 60.307 63.158 0.00 0.00 0.00 4.96
432 433 2.073101 CCCTAGACCTCCTTGCCCC 61.073 68.421 0.00 0.00 0.00 5.80
433 434 2.747443 GCCCTAGACCTCCTTGCCC 61.747 68.421 0.00 0.00 0.00 5.36
434 435 2.911928 GCCCTAGACCTCCTTGCC 59.088 66.667 0.00 0.00 0.00 4.52
435 436 2.501610 CGCCCTAGACCTCCTTGC 59.498 66.667 0.00 0.00 0.00 4.01
436 437 2.303549 CTGCGCCCTAGACCTCCTTG 62.304 65.000 4.18 0.00 0.00 3.61
437 438 2.038975 TGCGCCCTAGACCTCCTT 59.961 61.111 4.18 0.00 0.00 3.36
438 439 2.443016 CTGCGCCCTAGACCTCCT 60.443 66.667 4.18 0.00 0.00 3.69
439 440 4.228567 GCTGCGCCCTAGACCTCC 62.229 72.222 4.18 0.00 0.00 4.30
440 441 4.577246 CGCTGCGCCCTAGACCTC 62.577 72.222 9.88 0.00 0.00 3.85
459 460 4.570663 GACACGGGGGAGATCGCG 62.571 72.222 0.00 0.00 46.34 5.87
460 461 4.570663 CGACACGGGGGAGATCGC 62.571 72.222 0.00 0.00 0.00 4.58
461 462 2.827190 TCGACACGGGGGAGATCG 60.827 66.667 0.00 0.00 0.00 3.69
462 463 2.491022 CCTCGACACGGGGGAGATC 61.491 68.421 9.33 0.00 44.87 2.75
463 464 2.442272 CCTCGACACGGGGGAGAT 60.442 66.667 9.33 0.00 44.87 2.75
472 473 4.353437 AACGCCCGACCTCGACAC 62.353 66.667 0.00 0.00 43.02 3.67
473 474 4.047059 GAACGCCCGACCTCGACA 62.047 66.667 0.00 0.00 43.02 4.35
474 475 4.790861 GGAACGCCCGACCTCGAC 62.791 72.222 0.00 0.00 43.02 4.20
476 477 4.796231 CAGGAACGCCCGACCTCG 62.796 72.222 7.80 0.00 40.87 4.63
477 478 2.726822 AAACAGGAACGCCCGACCTC 62.727 60.000 7.80 0.00 40.87 3.85
478 479 2.333701 AAAACAGGAACGCCCGACCT 62.334 55.000 0.00 0.25 40.87 3.85
479 480 1.895231 AAAACAGGAACGCCCGACC 60.895 57.895 0.00 0.00 40.87 4.79
480 481 1.281656 CAAAACAGGAACGCCCGAC 59.718 57.895 0.00 0.00 40.87 4.79
481 482 1.894756 CCAAAACAGGAACGCCCGA 60.895 57.895 0.00 0.00 40.87 5.14
482 483 2.642700 CCAAAACAGGAACGCCCG 59.357 61.111 0.00 0.00 40.87 6.13
483 484 2.022240 TTGCCAAAACAGGAACGCCC 62.022 55.000 0.00 0.00 33.31 6.13
484 485 0.179097 TTTGCCAAAACAGGAACGCC 60.179 50.000 0.00 0.00 0.00 5.68
485 486 1.792367 GATTTGCCAAAACAGGAACGC 59.208 47.619 0.00 0.00 0.00 4.84
486 487 3.308530 GAGATTTGCCAAAACAGGAACG 58.691 45.455 0.00 0.00 0.00 3.95
487 488 3.554960 GGGAGATTTGCCAAAACAGGAAC 60.555 47.826 0.00 0.00 34.38 3.62
488 489 2.632512 GGGAGATTTGCCAAAACAGGAA 59.367 45.455 0.00 0.00 34.38 3.36
489 490 2.158325 AGGGAGATTTGCCAAAACAGGA 60.158 45.455 0.00 0.00 37.25 3.86
490 491 2.250924 AGGGAGATTTGCCAAAACAGG 58.749 47.619 0.00 0.00 37.25 4.00
491 492 4.341366 AAAGGGAGATTTGCCAAAACAG 57.659 40.909 0.00 0.00 37.25 3.16
492 493 4.769345 AAAAGGGAGATTTGCCAAAACA 57.231 36.364 0.00 0.00 37.25 2.83
511 512 7.015195 CAGGAAAGTGAAATTCTCCCCTAAAAA 59.985 37.037 0.00 0.00 0.00 1.94
512 513 6.493458 CAGGAAAGTGAAATTCTCCCCTAAAA 59.507 38.462 0.00 0.00 0.00 1.52
513 514 6.010219 CAGGAAAGTGAAATTCTCCCCTAAA 58.990 40.000 0.00 0.00 0.00 1.85
514 515 5.516591 CCAGGAAAGTGAAATTCTCCCCTAA 60.517 44.000 0.00 0.00 0.00 2.69
515 516 4.018415 CCAGGAAAGTGAAATTCTCCCCTA 60.018 45.833 0.00 0.00 0.00 3.53
516 517 3.245407 CCAGGAAAGTGAAATTCTCCCCT 60.245 47.826 0.00 0.00 0.00 4.79
517 518 3.092301 CCAGGAAAGTGAAATTCTCCCC 58.908 50.000 0.00 0.00 0.00 4.81
518 519 2.493675 GCCAGGAAAGTGAAATTCTCCC 59.506 50.000 0.00 0.00 0.00 4.30
519 520 2.493675 GGCCAGGAAAGTGAAATTCTCC 59.506 50.000 0.00 0.00 0.00 3.71
520 521 3.425659 AGGCCAGGAAAGTGAAATTCTC 58.574 45.455 5.01 0.00 0.00 2.87
521 522 3.075134 AGAGGCCAGGAAAGTGAAATTCT 59.925 43.478 5.01 0.00 0.00 2.40
522 523 3.192212 CAGAGGCCAGGAAAGTGAAATTC 59.808 47.826 5.01 0.00 0.00 2.17
523 524 3.160269 CAGAGGCCAGGAAAGTGAAATT 58.840 45.455 5.01 0.00 0.00 1.82
524 525 2.800250 CAGAGGCCAGGAAAGTGAAAT 58.200 47.619 5.01 0.00 0.00 2.17
525 526 1.819305 GCAGAGGCCAGGAAAGTGAAA 60.819 52.381 5.01 0.00 0.00 2.69
526 527 0.250901 GCAGAGGCCAGGAAAGTGAA 60.251 55.000 5.01 0.00 0.00 3.18
527 528 1.376466 GCAGAGGCCAGGAAAGTGA 59.624 57.895 5.01 0.00 0.00 3.41
528 529 1.073722 TGCAGAGGCCAGGAAAGTG 59.926 57.895 5.01 0.00 40.13 3.16
529 530 1.073897 GTGCAGAGGCCAGGAAAGT 59.926 57.895 5.01 0.00 40.13 2.66
530 531 1.676967 GGTGCAGAGGCCAGGAAAG 60.677 63.158 5.01 0.00 40.13 2.62
531 532 2.005606 TTGGTGCAGAGGCCAGGAAA 62.006 55.000 5.01 0.00 40.13 3.13
532 533 2.459969 TTGGTGCAGAGGCCAGGAA 61.460 57.895 5.01 0.00 40.13 3.36
533 534 2.853542 TTGGTGCAGAGGCCAGGA 60.854 61.111 5.01 0.00 40.13 3.86
534 535 1.841302 TAGTTGGTGCAGAGGCCAGG 61.841 60.000 5.01 0.00 40.13 4.45
535 536 0.392193 CTAGTTGGTGCAGAGGCCAG 60.392 60.000 5.01 0.00 40.13 4.85
536 537 0.835971 TCTAGTTGGTGCAGAGGCCA 60.836 55.000 5.01 0.00 40.13 5.36
537 538 0.324943 TTCTAGTTGGTGCAGAGGCC 59.675 55.000 0.00 0.00 40.13 5.19
538 539 2.185004 TTTCTAGTTGGTGCAGAGGC 57.815 50.000 0.00 0.00 41.68 4.70
539 540 3.119708 GCATTTTCTAGTTGGTGCAGAGG 60.120 47.826 0.00 0.00 33.09 3.69
540 541 3.503363 TGCATTTTCTAGTTGGTGCAGAG 59.497 43.478 10.12 0.00 37.63 3.35
541 542 3.485394 TGCATTTTCTAGTTGGTGCAGA 58.515 40.909 10.12 0.00 37.63 4.26
542 543 3.921119 TGCATTTTCTAGTTGGTGCAG 57.079 42.857 10.12 0.00 37.63 4.41
543 544 4.142708 CGTATGCATTTTCTAGTTGGTGCA 60.143 41.667 3.54 14.45 45.28 4.57
544 545 4.094294 TCGTATGCATTTTCTAGTTGGTGC 59.906 41.667 3.54 0.00 0.00 5.01
545 546 5.447279 GGTCGTATGCATTTTCTAGTTGGTG 60.447 44.000 3.54 0.00 0.00 4.17
546 547 4.634443 GGTCGTATGCATTTTCTAGTTGGT 59.366 41.667 3.54 0.00 0.00 3.67
547 548 4.876107 AGGTCGTATGCATTTTCTAGTTGG 59.124 41.667 3.54 0.00 0.00 3.77
548 549 6.422776 AAGGTCGTATGCATTTTCTAGTTG 57.577 37.500 3.54 0.00 0.00 3.16
549 550 7.448748 AAAAGGTCGTATGCATTTTCTAGTT 57.551 32.000 3.54 0.00 0.00 2.24
550 551 8.556213 TTAAAAGGTCGTATGCATTTTCTAGT 57.444 30.769 3.54 0.00 33.02 2.57
551 552 8.665685 ACTTAAAAGGTCGTATGCATTTTCTAG 58.334 33.333 3.54 2.78 33.02 2.43
552 553 8.556213 ACTTAAAAGGTCGTATGCATTTTCTA 57.444 30.769 3.54 0.00 33.02 2.10
553 554 7.448748 ACTTAAAAGGTCGTATGCATTTTCT 57.551 32.000 3.54 0.00 33.02 2.52
554 555 9.221775 CATACTTAAAAGGTCGTATGCATTTTC 57.778 33.333 3.54 0.00 34.70 2.29
555 556 8.952278 TCATACTTAAAAGGTCGTATGCATTTT 58.048 29.630 3.54 0.36 39.17 1.82
556 557 8.500753 TCATACTTAAAAGGTCGTATGCATTT 57.499 30.769 3.54 0.00 39.17 2.32
557 558 7.769044 ACTCATACTTAAAAGGTCGTATGCATT 59.231 33.333 3.54 0.00 39.17 3.56
558 559 7.272978 ACTCATACTTAAAAGGTCGTATGCAT 58.727 34.615 3.79 3.79 39.17 3.96
559 560 6.636705 ACTCATACTTAAAAGGTCGTATGCA 58.363 36.000 0.00 0.00 39.17 3.96
560 561 7.919621 AGTACTCATACTTAAAAGGTCGTATGC 59.080 37.037 0.00 0.00 38.59 3.14
563 564 9.113838 CCTAGTACTCATACTTAAAAGGTCGTA 57.886 37.037 0.00 0.00 41.99 3.43
564 565 7.831193 TCCTAGTACTCATACTTAAAAGGTCGT 59.169 37.037 0.00 0.00 41.99 4.34
565 566 8.218338 TCCTAGTACTCATACTTAAAAGGTCG 57.782 38.462 0.00 0.00 41.99 4.79
578 579 8.537858 ACCGAGTTTAAAAATCCTAGTACTCAT 58.462 33.333 0.00 0.00 32.40 2.90
579 580 7.899973 ACCGAGTTTAAAAATCCTAGTACTCA 58.100 34.615 0.00 0.00 32.40 3.41
580 581 8.768957 AACCGAGTTTAAAAATCCTAGTACTC 57.231 34.615 0.00 0.00 0.00 2.59
581 582 9.645059 GTAACCGAGTTTAAAAATCCTAGTACT 57.355 33.333 0.00 0.00 0.00 2.73
582 583 9.423061 TGTAACCGAGTTTAAAAATCCTAGTAC 57.577 33.333 0.00 0.00 0.00 2.73
583 584 9.423061 GTGTAACCGAGTTTAAAAATCCTAGTA 57.577 33.333 0.00 0.00 0.00 1.82
584 585 7.933033 TGTGTAACCGAGTTTAAAAATCCTAGT 59.067 33.333 0.00 0.00 34.36 2.57
585 586 8.314143 TGTGTAACCGAGTTTAAAAATCCTAG 57.686 34.615 0.00 0.00 34.36 3.02
586 587 8.851541 ATGTGTAACCGAGTTTAAAAATCCTA 57.148 30.769 0.00 0.00 34.36 2.94
587 588 7.360607 CGATGTGTAACCGAGTTTAAAAATCCT 60.361 37.037 0.00 0.00 34.36 3.24
588 589 6.739550 CGATGTGTAACCGAGTTTAAAAATCC 59.260 38.462 0.00 0.00 34.36 3.01
589 590 7.512297 TCGATGTGTAACCGAGTTTAAAAATC 58.488 34.615 0.00 0.00 34.36 2.17
590 591 7.424227 TCGATGTGTAACCGAGTTTAAAAAT 57.576 32.000 0.00 0.00 34.36 1.82
591 592 6.841443 TCGATGTGTAACCGAGTTTAAAAA 57.159 33.333 0.00 0.00 34.36 1.94
592 593 6.456447 CTCGATGTGTAACCGAGTTTAAAA 57.544 37.500 0.00 0.00 43.20 1.52
600 601 1.674441 CTAGGCTCGATGTGTAACCGA 59.326 52.381 0.00 0.00 34.36 4.69
601 602 1.404391 ACTAGGCTCGATGTGTAACCG 59.596 52.381 0.00 0.00 34.36 4.44
602 603 2.223758 GGACTAGGCTCGATGTGTAACC 60.224 54.545 0.00 0.00 34.36 2.85
603 604 2.688958 AGGACTAGGCTCGATGTGTAAC 59.311 50.000 0.00 0.00 37.35 2.50
604 605 2.950309 GAGGACTAGGCTCGATGTGTAA 59.050 50.000 0.00 0.00 0.00 2.41
605 606 2.092592 TGAGGACTAGGCTCGATGTGTA 60.093 50.000 0.00 0.00 0.00 2.90
606 607 1.341089 TGAGGACTAGGCTCGATGTGT 60.341 52.381 0.00 0.00 0.00 3.72
607 608 1.393603 TGAGGACTAGGCTCGATGTG 58.606 55.000 0.00 0.00 0.00 3.21
608 609 2.145397 TTGAGGACTAGGCTCGATGT 57.855 50.000 0.00 0.00 0.00 3.06
609 610 4.855715 TTATTGAGGACTAGGCTCGATG 57.144 45.455 0.00 0.00 0.00 3.84
610 611 5.788450 CATTTATTGAGGACTAGGCTCGAT 58.212 41.667 0.00 0.00 0.00 3.59
611 612 4.501571 GCATTTATTGAGGACTAGGCTCGA 60.502 45.833 0.00 0.00 0.00 4.04
612 613 3.743396 GCATTTATTGAGGACTAGGCTCG 59.257 47.826 0.00 0.00 0.00 5.03
613 614 3.743396 CGCATTTATTGAGGACTAGGCTC 59.257 47.826 0.00 0.00 0.00 4.70
614 615 3.134804 ACGCATTTATTGAGGACTAGGCT 59.865 43.478 0.00 0.00 0.00 4.58
615 616 3.248602 CACGCATTTATTGAGGACTAGGC 59.751 47.826 0.00 0.00 0.00 3.93
616 617 4.693283 TCACGCATTTATTGAGGACTAGG 58.307 43.478 0.00 0.00 0.00 3.02
617 618 5.352284 ACTCACGCATTTATTGAGGACTAG 58.648 41.667 3.09 0.00 41.00 2.57
618 619 5.339008 ACTCACGCATTTATTGAGGACTA 57.661 39.130 3.09 0.00 41.00 2.59
619 620 4.207891 ACTCACGCATTTATTGAGGACT 57.792 40.909 3.09 0.00 41.00 3.85
620 621 4.270325 GGTACTCACGCATTTATTGAGGAC 59.730 45.833 4.84 4.84 46.57 3.85
621 622 4.161565 AGGTACTCACGCATTTATTGAGGA 59.838 41.667 3.09 0.00 41.00 3.71
622 623 4.442706 AGGTACTCACGCATTTATTGAGG 58.557 43.478 3.09 0.00 41.00 3.86
623 624 7.534085 TTTAGGTACTCACGCATTTATTGAG 57.466 36.000 0.00 0.00 42.17 3.02
624 625 7.908827 TTTTAGGTACTCACGCATTTATTGA 57.091 32.000 0.00 0.00 41.75 2.57
646 647 6.015180 GGTTTATTCTTAAGGACCGGGTTTTT 60.015 38.462 6.32 1.61 0.00 1.94
647 648 5.477984 GGTTTATTCTTAAGGACCGGGTTTT 59.522 40.000 6.32 1.99 0.00 2.43
648 649 5.012239 GGTTTATTCTTAAGGACCGGGTTT 58.988 41.667 6.32 0.00 0.00 3.27
649 650 4.568380 GGGTTTATTCTTAAGGACCGGGTT 60.568 45.833 6.32 0.00 0.00 4.11
650 651 3.054139 GGGTTTATTCTTAAGGACCGGGT 60.054 47.826 6.32 0.00 0.00 5.28
651 652 3.054213 TGGGTTTATTCTTAAGGACCGGG 60.054 47.826 6.32 0.00 0.00 5.73
652 653 4.224991 TGGGTTTATTCTTAAGGACCGG 57.775 45.455 0.00 0.00 0.00 5.28
653 654 6.578163 TTTTGGGTTTATTCTTAAGGACCG 57.422 37.500 1.85 0.00 0.00 4.79
654 655 8.362464 AGATTTTGGGTTTATTCTTAAGGACC 57.638 34.615 1.85 3.92 0.00 4.46
655 656 9.020731 TGAGATTTTGGGTTTATTCTTAAGGAC 57.979 33.333 1.85 0.00 0.00 3.85
656 657 9.594936 TTGAGATTTTGGGTTTATTCTTAAGGA 57.405 29.630 1.85 0.00 0.00 3.36
661 662 9.546428 CACTTTTGAGATTTTGGGTTTATTCTT 57.454 29.630 0.00 0.00 0.00 2.52
662 663 8.150296 CCACTTTTGAGATTTTGGGTTTATTCT 58.850 33.333 0.00 0.00 0.00 2.40
663 664 8.147704 TCCACTTTTGAGATTTTGGGTTTATTC 58.852 33.333 0.00 0.00 0.00 1.75
664 665 7.931407 GTCCACTTTTGAGATTTTGGGTTTATT 59.069 33.333 0.00 0.00 0.00 1.40
665 666 7.441836 GTCCACTTTTGAGATTTTGGGTTTAT 58.558 34.615 0.00 0.00 0.00 1.40
666 667 6.460399 CGTCCACTTTTGAGATTTTGGGTTTA 60.460 38.462 0.00 0.00 0.00 2.01
667 668 5.670485 GTCCACTTTTGAGATTTTGGGTTT 58.330 37.500 0.00 0.00 0.00 3.27
668 669 4.202111 CGTCCACTTTTGAGATTTTGGGTT 60.202 41.667 0.00 0.00 0.00 4.11
669 670 3.317993 CGTCCACTTTTGAGATTTTGGGT 59.682 43.478 0.00 0.00 0.00 4.51
670 671 3.857010 GCGTCCACTTTTGAGATTTTGGG 60.857 47.826 0.00 0.00 0.00 4.12
671 672 3.308530 GCGTCCACTTTTGAGATTTTGG 58.691 45.455 0.00 0.00 0.00 3.28
672 673 2.973224 CGCGTCCACTTTTGAGATTTTG 59.027 45.455 0.00 0.00 0.00 2.44
673 674 2.604614 GCGCGTCCACTTTTGAGATTTT 60.605 45.455 8.43 0.00 0.00 1.82
674 675 1.069227 GCGCGTCCACTTTTGAGATTT 60.069 47.619 8.43 0.00 0.00 2.17
675 676 0.517316 GCGCGTCCACTTTTGAGATT 59.483 50.000 8.43 0.00 0.00 2.40
676 677 0.602638 TGCGCGTCCACTTTTGAGAT 60.603 50.000 8.43 0.00 0.00 2.75
677 678 1.227409 TGCGCGTCCACTTTTGAGA 60.227 52.632 8.43 0.00 0.00 3.27
678 679 1.082756 GTGCGCGTCCACTTTTGAG 60.083 57.895 8.43 0.00 33.02 3.02
679 680 1.522806 AGTGCGCGTCCACTTTTGA 60.523 52.632 12.80 0.00 43.19 2.69
680 681 3.022287 AGTGCGCGTCCACTTTTG 58.978 55.556 12.80 0.00 43.19 2.44
698 699 3.668191 GTGATTGAAATCGCTCGCAAAAA 59.332 39.130 8.92 0.00 41.49 1.94
699 700 3.233578 GTGATTGAAATCGCTCGCAAAA 58.766 40.909 8.92 0.00 41.49 2.44
700 701 2.225255 TGTGATTGAAATCGCTCGCAAA 59.775 40.909 15.50 0.00 44.23 3.68
701 702 1.803555 TGTGATTGAAATCGCTCGCAA 59.196 42.857 15.50 0.00 44.23 4.85
702 703 1.128507 GTGTGATTGAAATCGCTCGCA 59.871 47.619 15.50 0.00 44.23 5.10
703 704 1.128507 TGTGTGATTGAAATCGCTCGC 59.871 47.619 15.50 8.09 44.23 5.03
704 705 2.762472 GTGTGTGATTGAAATCGCTCG 58.238 47.619 15.50 0.00 44.23 5.03
705 706 2.157668 ACGTGTGTGATTGAAATCGCTC 59.842 45.455 15.50 12.82 44.23 5.03
706 707 2.143122 ACGTGTGTGATTGAAATCGCT 58.857 42.857 15.50 0.00 44.23 4.93
707 708 2.594529 ACGTGTGTGATTGAAATCGC 57.405 45.000 9.20 9.20 44.19 4.58
723 724 2.927856 TGGAGTGGGGATGCACGT 60.928 61.111 0.00 0.00 0.00 4.49
823 826 0.392998 TTGGGGAGATGCGAGAAAGC 60.393 55.000 0.00 0.00 37.71 3.51
826 829 2.026356 TGAATTTGGGGAGATGCGAGAA 60.026 45.455 0.00 0.00 0.00 2.87
1048 1065 2.126031 GGCCTCGTCTTCACCGTC 60.126 66.667 0.00 0.00 0.00 4.79
1066 1083 2.844839 GGGGGAGGCGAGTGCTAT 60.845 66.667 0.00 0.00 42.25 2.97
1085 1102 1.614525 ACCTCATGCCTGGAGCTCA 60.615 57.895 17.19 0.61 44.23 4.26
1199 1216 1.832167 GGTGTTGGTGGTGCATGGT 60.832 57.895 0.00 0.00 0.00 3.55
1202 1219 1.832167 GGTGGTGTTGGTGGTGCAT 60.832 57.895 0.00 0.00 0.00 3.96
1288 1316 4.142609 TCCATTGCAACTATGGAGAGAC 57.857 45.455 14.87 0.00 45.02 3.36
1633 1685 3.858989 TGTGCGTGTGTGTGTGCG 61.859 61.111 0.00 0.00 0.00 5.34
1634 1686 2.277247 GTGTGCGTGTGTGTGTGC 60.277 61.111 0.00 0.00 0.00 4.57
1635 1687 2.021243 CGTGTGCGTGTGTGTGTG 59.979 61.111 0.00 0.00 0.00 3.82
1646 1706 2.651863 GTGTGTTGCTGCGTGTGC 60.652 61.111 0.00 0.00 43.20 4.57
1738 1821 2.735677 CGTGCGTGTGTGTGTGTGT 61.736 57.895 0.00 0.00 0.00 3.72
2062 2163 2.903784 TGTTGTTCCCTTAGCTAGCTCA 59.096 45.455 23.26 9.92 0.00 4.26
2078 2179 1.421268 TCTGGTGCTGGATTCTGTTGT 59.579 47.619 0.00 0.00 0.00 3.32
2157 2285 6.003326 CACCCATGTCAGGTATAAATGCATA 58.997 40.000 0.00 0.00 35.24 3.14
2200 2328 2.550978 ACGAAATGCAGACTAATCCCG 58.449 47.619 0.00 0.00 0.00 5.14


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.