Multiple sequence alignment - TraesCS7A01G488000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G488000 chr7A 100.000 4538 0 0 1 4538 678172323 678167786 0.000000e+00 8381
1 TraesCS7A01G488000 chr7A 89.157 166 17 1 3934 4098 679165432 679165597 5.950000e-49 206
2 TraesCS7A01G488000 chr1B 96.807 4416 76 9 1 4380 154147340 154151726 0.000000e+00 7313
3 TraesCS7A01G488000 chr1B 91.898 938 59 10 5 931 55536583 55535652 0.000000e+00 1295
4 TraesCS7A01G488000 chr2A 96.672 4417 81 9 1 4380 195112236 195116623 0.000000e+00 7282
5 TraesCS7A01G488000 chr2A 97.634 3212 41 4 1203 4380 721735602 721738812 0.000000e+00 5478
6 TraesCS7A01G488000 chr2A 98.370 1227 12 4 1 1226 721734352 721735571 0.000000e+00 2148
7 TraesCS7A01G488000 chr2A 90.638 235 12 2 4156 4380 281673688 281673922 2.050000e-78 303
8 TraesCS7A01G488000 chr2A 90.213 235 13 2 4156 4380 281670729 281670963 9.540000e-77 298
9 TraesCS7A01G488000 chr2A 88.889 234 16 2 4156 4380 281679310 281679542 3.460000e-71 279
10 TraesCS7A01G488000 chr2A 87.660 235 19 7 4156 4380 281676497 281676731 9.680000e-67 265
11 TraesCS7A01G488000 chr1A 96.449 4421 69 19 1 4383 14529380 14525010 0.000000e+00 7214
12 TraesCS7A01G488000 chr1A 91.808 354 14 7 3381 3719 13765077 13764724 3.180000e-131 479
13 TraesCS7A01G488000 chr7D 98.323 1849 27 3 923 2767 509912572 509910724 0.000000e+00 3240
14 TraesCS7A01G488000 chr7D 92.329 1434 36 10 2767 4126 509910754 509909321 0.000000e+00 1971
15 TraesCS7A01G488000 chr7D 97.744 931 20 1 1 931 509914521 509913592 0.000000e+00 1602
16 TraesCS7A01G488000 chr7D 95.475 221 10 0 3921 4141 501019044 501018824 2.010000e-93 353
17 TraesCS7A01G488000 chr7D 88.942 208 21 2 3731 3937 162188507 162188713 5.830000e-64 255
18 TraesCS7A01G488000 chr7D 89.286 168 17 1 3934 4100 587258735 587258902 4.600000e-50 209
19 TraesCS7A01G488000 chr7D 89.809 157 14 2 4382 4538 586900983 586900829 2.770000e-47 200
20 TraesCS7A01G488000 chr5D 98.269 1849 28 3 923 2767 254531932 254530084 0.000000e+00 3234
21 TraesCS7A01G488000 chr5D 97.946 1850 33 5 923 2768 551018687 551016839 0.000000e+00 3201
22 TraesCS7A01G488000 chr5D 93.041 1322 41 4 2767 4037 254530114 254528793 0.000000e+00 1884
23 TraesCS7A01G488000 chr5D 91.301 1345 36 18 2767 4037 551016871 551015534 0.000000e+00 1760
24 TraesCS7A01G488000 chr5D 97.207 931 21 3 1 931 551020632 551019707 0.000000e+00 1570
25 TraesCS7A01G488000 chr5D 97.451 863 20 2 70 931 254533815 254532954 0.000000e+00 1471
26 TraesCS7A01G488000 chr5D 95.946 148 6 0 3997 4144 551015522 551015375 1.630000e-59 241
27 TraesCS7A01G488000 chr4D 98.215 1849 29 4 923 2767 40832554 40834402 0.000000e+00 3229
28 TraesCS7A01G488000 chr4D 91.353 1434 41 10 2767 4126 40834372 40835796 0.000000e+00 1884
29 TraesCS7A01G488000 chr4A 90.086 928 81 8 5 931 409027337 409026420 0.000000e+00 1194
30 TraesCS7A01G488000 chr6D 96.970 561 16 1 1732 2291 39581154 39580594 0.000000e+00 941
31 TraesCS7A01G488000 chr6D 95.444 439 20 0 2767 3205 39577764 39577326 0.000000e+00 701
32 TraesCS7A01G488000 chr6D 95.224 335 14 1 2284 2616 39578443 39578109 3.110000e-146 529
33 TraesCS7A01G488000 chr6D 96.667 150 4 1 2619 2767 39577883 39577734 9.750000e-62 248
34 TraesCS7A01G488000 chrUn 100.000 411 0 0 1309 1719 477629048 477629458 0.000000e+00 760
35 TraesCS7A01G488000 chr1D 92.308 351 12 4 3384 3719 11620623 11620273 6.830000e-133 484
36 TraesCS7A01G488000 chr7B 87.402 254 13 6 4141 4383 388872349 388872104 1.610000e-69 274
37 TraesCS7A01G488000 chr3A 88.444 225 18 3 3932 4149 329532653 329532430 9.680000e-67 265
38 TraesCS7A01G488000 chr3A 98.462 65 1 0 924 988 365952809 365952745 1.030000e-21 115
39 TraesCS7A01G488000 chr3D 93.827 81 2 2 3305 3382 535396261 535396181 7.980000e-23 119


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G488000 chr7A 678167786 678172323 4537 True 8381.000000 8381 100.000000 1 4538 1 chr7A.!!$R1 4537
1 TraesCS7A01G488000 chr1B 154147340 154151726 4386 False 7313.000000 7313 96.807000 1 4380 1 chr1B.!!$F1 4379
2 TraesCS7A01G488000 chr1B 55535652 55536583 931 True 1295.000000 1295 91.898000 5 931 1 chr1B.!!$R1 926
3 TraesCS7A01G488000 chr2A 195112236 195116623 4387 False 7282.000000 7282 96.672000 1 4380 1 chr2A.!!$F1 4379
4 TraesCS7A01G488000 chr2A 721734352 721738812 4460 False 3813.000000 5478 98.002000 1 4380 2 chr2A.!!$F3 4379
5 TraesCS7A01G488000 chr2A 281670729 281679542 8813 False 286.250000 303 89.350000 4156 4380 4 chr2A.!!$F2 224
6 TraesCS7A01G488000 chr1A 14525010 14529380 4370 True 7214.000000 7214 96.449000 1 4383 1 chr1A.!!$R2 4382
7 TraesCS7A01G488000 chr7D 509909321 509914521 5200 True 2271.000000 3240 96.132000 1 4126 3 chr7D.!!$R3 4125
8 TraesCS7A01G488000 chr5D 254528793 254533815 5022 True 2196.333333 3234 96.253667 70 4037 3 chr5D.!!$R1 3967
9 TraesCS7A01G488000 chr5D 551015375 551020632 5257 True 1693.000000 3201 95.600000 1 4144 4 chr5D.!!$R2 4143
10 TraesCS7A01G488000 chr4D 40832554 40835796 3242 False 2556.500000 3229 94.784000 923 4126 2 chr4D.!!$F1 3203
11 TraesCS7A01G488000 chr4A 409026420 409027337 917 True 1194.000000 1194 90.086000 5 931 1 chr4A.!!$R1 926
12 TraesCS7A01G488000 chr6D 39577326 39581154 3828 True 604.750000 941 96.076250 1732 3205 4 chr6D.!!$R1 1473

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
294 295 1.291877 ACTCGCACGAGCCATTCAAC 61.292 55.000 19.35 0.0 45.54 3.18 F
733 744 4.021016 TGCCTACAACAAAACAAAACCAGT 60.021 37.500 0.00 0.0 0.00 4.00 F
3113 6595 6.717997 GGAAATCCCTCCAAACTAAACTAACA 59.282 38.462 0.00 0.0 35.36 2.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2374 5627 4.017591 TGTCATGGAGGTGATGGGTATTTT 60.018 41.667 0.00 0.0 0.00 1.82 R
2426 5679 2.619074 GGAGGTCCTCCTTTTGGTGATG 60.619 54.545 28.40 0.0 46.41 3.07 R
4504 16732 0.400213 CAAACAGTGTCCAGGGCCTA 59.600 55.000 5.28 0.0 0.00 3.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
282 283 7.274904 TGAATACTATTGTCAGTTTACTCGCAC 59.725 37.037 0.00 0.00 0.00 5.34
294 295 1.291877 ACTCGCACGAGCCATTCAAC 61.292 55.000 19.35 0.00 45.54 3.18
733 744 4.021016 TGCCTACAACAAAACAAAACCAGT 60.021 37.500 0.00 0.00 0.00 4.00
3113 6595 6.717997 GGAAATCCCTCCAAACTAAACTAACA 59.282 38.462 0.00 0.00 35.36 2.41
3549 7056 2.238646 TGCTAACTGATTCATCGGGGTT 59.761 45.455 0.72 0.67 37.50 4.11
3710 7217 5.352569 ACTGAGCTCATGTATAAGTTGCAAC 59.647 40.000 22.17 22.17 0.00 4.17
4026 7664 1.228644 TCCTTTGGGACCTCGACGA 60.229 57.895 0.00 0.00 36.57 4.20
4388 16616 5.194432 TCCATTAGGAGTAGATATCTCGGC 58.806 45.833 8.95 1.22 39.61 5.54
4389 16617 4.339814 CCATTAGGAGTAGATATCTCGGCC 59.660 50.000 8.95 8.84 36.89 6.13
4390 16618 2.517998 AGGAGTAGATATCTCGGCCC 57.482 55.000 8.95 6.86 33.26 5.80
4391 16619 1.096416 GGAGTAGATATCTCGGCCCG 58.904 60.000 8.95 0.00 33.26 6.13
4392 16620 1.339824 GGAGTAGATATCTCGGCCCGA 60.340 57.143 8.95 5.37 33.26 5.14
4393 16621 1.738908 GAGTAGATATCTCGGCCCGAC 59.261 57.143 8.95 0.00 0.00 4.79
4394 16622 0.810016 GTAGATATCTCGGCCCGACC 59.190 60.000 8.95 0.00 0.00 4.79
4395 16623 0.323178 TAGATATCTCGGCCCGACCC 60.323 60.000 8.95 0.00 33.26 4.46
4396 16624 1.606889 GATATCTCGGCCCGACCCT 60.607 63.158 0.00 0.00 33.26 4.34
4397 16625 1.152312 ATATCTCGGCCCGACCCTT 60.152 57.895 0.00 0.00 33.26 3.95
4398 16626 0.763223 ATATCTCGGCCCGACCCTTT 60.763 55.000 0.00 0.00 33.26 3.11
4399 16627 1.682451 TATCTCGGCCCGACCCTTTG 61.682 60.000 0.00 0.00 33.26 2.77
4400 16628 4.778143 CTCGGCCCGACCCTTTGG 62.778 72.222 0.00 0.00 33.26 3.28
4410 16638 4.740822 CCCTTTGGTCCCGGGCTG 62.741 72.222 18.49 1.25 0.00 4.85
4411 16639 4.740822 CCTTTGGTCCCGGGCTGG 62.741 72.222 18.49 5.01 37.55 4.85
4440 16668 3.652000 GTCGACGGCCCGCAAAAA 61.652 61.111 1.23 0.00 0.00 1.94
4462 16690 8.635765 AAAAAGGAAACTCTGATGCAGTATAA 57.364 30.769 0.00 0.00 42.68 0.98
4463 16691 8.814038 AAAAGGAAACTCTGATGCAGTATAAT 57.186 30.769 0.00 0.00 42.68 1.28
4464 16692 8.814038 AAAGGAAACTCTGATGCAGTATAATT 57.186 30.769 0.00 0.00 42.68 1.40
4465 16693 8.814038 AAGGAAACTCTGATGCAGTATAATTT 57.186 30.769 0.00 0.00 42.68 1.82
4466 16694 8.814038 AGGAAACTCTGATGCAGTATAATTTT 57.186 30.769 0.00 0.00 32.90 1.82
4467 16695 8.680903 AGGAAACTCTGATGCAGTATAATTTTG 58.319 33.333 0.00 0.00 32.90 2.44
4468 16696 7.433425 GGAAACTCTGATGCAGTATAATTTTGC 59.567 37.037 0.00 0.00 38.30 3.68
4477 16705 7.072177 TGCAGTATAATTTTGCAGTACAGTC 57.928 36.000 0.00 0.00 42.41 3.51
4478 16706 6.093495 TGCAGTATAATTTTGCAGTACAGTCC 59.907 38.462 0.00 0.00 42.41 3.85
4479 16707 6.093495 GCAGTATAATTTTGCAGTACAGTCCA 59.907 38.462 0.00 0.00 37.75 4.02
4480 16708 7.201732 GCAGTATAATTTTGCAGTACAGTCCAT 60.202 37.037 0.00 0.00 37.75 3.41
4481 16709 8.124823 CAGTATAATTTTGCAGTACAGTCCATG 58.875 37.037 0.00 0.00 0.00 3.66
4482 16710 8.046708 AGTATAATTTTGCAGTACAGTCCATGA 58.953 33.333 0.00 0.00 0.00 3.07
4483 16711 5.376854 AATTTTGCAGTACAGTCCATGAC 57.623 39.130 0.00 0.00 0.00 3.06
4484 16712 3.769739 TTTGCAGTACAGTCCATGACT 57.230 42.857 0.00 0.00 44.44 3.41
4485 16713 3.769739 TTGCAGTACAGTCCATGACTT 57.230 42.857 0.00 0.00 41.37 3.01
4486 16714 3.319137 TGCAGTACAGTCCATGACTTC 57.681 47.619 0.00 0.00 41.37 3.01
4487 16715 2.632512 TGCAGTACAGTCCATGACTTCA 59.367 45.455 0.00 0.00 41.37 3.02
4488 16716 3.070878 TGCAGTACAGTCCATGACTTCAA 59.929 43.478 0.00 0.00 41.37 2.69
4489 16717 4.256920 GCAGTACAGTCCATGACTTCAAT 58.743 43.478 0.00 0.00 41.37 2.57
4490 16718 4.697352 GCAGTACAGTCCATGACTTCAATT 59.303 41.667 0.00 0.00 41.37 2.32
4491 16719 5.182001 GCAGTACAGTCCATGACTTCAATTT 59.818 40.000 0.00 0.00 41.37 1.82
4492 16720 6.294176 GCAGTACAGTCCATGACTTCAATTTT 60.294 38.462 0.00 0.00 41.37 1.82
4493 16721 7.651808 CAGTACAGTCCATGACTTCAATTTTT 58.348 34.615 0.00 0.00 41.37 1.94
4514 16742 4.456662 TTTTAACAGTTTAGGCCCTGGA 57.543 40.909 10.94 0.00 32.90 3.86
4515 16743 3.428413 TTAACAGTTTAGGCCCTGGAC 57.572 47.619 10.94 0.43 32.90 4.02
4516 16744 1.145571 AACAGTTTAGGCCCTGGACA 58.854 50.000 10.94 0.00 32.90 4.02
4517 16745 0.400594 ACAGTTTAGGCCCTGGACAC 59.599 55.000 10.94 0.00 32.90 3.67
4518 16746 0.693049 CAGTTTAGGCCCTGGACACT 59.307 55.000 0.00 0.00 0.00 3.55
4519 16747 0.693049 AGTTTAGGCCCTGGACACTG 59.307 55.000 0.00 0.00 0.00 3.66
4520 16748 0.400594 GTTTAGGCCCTGGACACTGT 59.599 55.000 0.00 0.00 0.00 3.55
4521 16749 1.145571 TTTAGGCCCTGGACACTGTT 58.854 50.000 0.00 0.00 0.00 3.16
4522 16750 1.145571 TTAGGCCCTGGACACTGTTT 58.854 50.000 0.00 0.00 0.00 2.83
4523 16751 0.400213 TAGGCCCTGGACACTGTTTG 59.600 55.000 0.00 0.00 0.00 2.93
4524 16752 1.903404 GGCCCTGGACACTGTTTGG 60.903 63.158 0.00 0.00 0.00 3.28
4525 16753 1.150536 GCCCTGGACACTGTTTGGA 59.849 57.895 0.00 0.00 0.00 3.53
4526 16754 0.467290 GCCCTGGACACTGTTTGGAA 60.467 55.000 0.00 0.00 0.00 3.53
4527 16755 1.823250 GCCCTGGACACTGTTTGGAAT 60.823 52.381 0.00 0.00 0.00 3.01
4528 16756 2.162681 CCCTGGACACTGTTTGGAATC 58.837 52.381 0.00 0.00 0.00 2.52
4529 16757 2.224867 CCCTGGACACTGTTTGGAATCT 60.225 50.000 0.00 0.00 0.00 2.40
4530 16758 2.816087 CCTGGACACTGTTTGGAATCTG 59.184 50.000 0.00 0.00 0.00 2.90
4531 16759 3.480470 CTGGACACTGTTTGGAATCTGT 58.520 45.455 0.00 0.00 0.00 3.41
4532 16760 3.213506 TGGACACTGTTTGGAATCTGTG 58.786 45.455 0.00 0.00 38.70 3.66
4533 16761 3.118075 TGGACACTGTTTGGAATCTGTGA 60.118 43.478 12.00 0.00 37.11 3.58
4534 16762 3.882888 GGACACTGTTTGGAATCTGTGAA 59.117 43.478 12.00 0.00 37.11 3.18
4535 16763 4.338118 GGACACTGTTTGGAATCTGTGAAA 59.662 41.667 12.00 0.00 37.11 2.69
4536 16764 5.163561 GGACACTGTTTGGAATCTGTGAAAA 60.164 40.000 12.00 0.00 37.11 2.29
4537 16765 5.894807 ACACTGTTTGGAATCTGTGAAAAG 58.105 37.500 12.00 0.00 37.11 2.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
282 283 2.993899 ACTACTTTCGTTGAATGGCTCG 59.006 45.455 0.00 0.00 0.00 5.03
294 295 6.148150 ACACTAGAACTGAGAGACTACTTTCG 59.852 42.308 0.00 0.00 31.04 3.46
486 495 3.498661 GGGTGGTTCTTCAATCTTCAGGT 60.499 47.826 0.00 0.00 0.00 4.00
609 620 3.329889 ATGCAGGACGGCCAGGAA 61.330 61.111 11.69 0.00 36.29 3.36
733 744 6.166279 AGACAATGAAAGCGATGAGTTTCTA 58.834 36.000 0.00 0.00 34.37 2.10
887 900 5.411669 CAGACCCCTTATAATTATGAACGGC 59.588 44.000 8.28 0.00 0.00 5.68
2374 5627 4.017591 TGTCATGGAGGTGATGGGTATTTT 60.018 41.667 0.00 0.00 0.00 1.82
2426 5679 2.619074 GGAGGTCCTCCTTTTGGTGATG 60.619 54.545 28.40 0.00 46.41 3.07
3132 6614 1.614824 CCTCCTCCTCACCTGCCTT 60.615 63.158 0.00 0.00 0.00 4.35
3483 6990 6.490381 CCTTGTCAATCATCCTGATCATCATT 59.510 38.462 0.00 0.00 35.76 2.57
3549 7056 3.324268 TCTTGTACGGAACATACCACCAA 59.676 43.478 0.00 0.00 38.10 3.67
3710 7217 1.044790 GCCATGGGATCCCTTTGTGG 61.045 60.000 31.05 28.65 36.94 4.17
4380 16608 1.382146 AAAGGGTCGGGCCGAGATA 60.382 57.895 31.98 4.46 36.23 1.98
4383 16611 4.778143 CCAAAGGGTCGGGCCGAG 62.778 72.222 31.98 16.53 36.23 4.63
4394 16622 4.740822 CCAGCCCGGGACCAAAGG 62.741 72.222 29.31 11.87 0.00 3.11
4423 16651 3.652000 TTTTTGCGGGCCGTCGAC 61.652 61.111 28.82 11.33 0.00 4.20
4437 16665 8.635765 TTATACTGCATCAGAGTTTCCTTTTT 57.364 30.769 0.29 0.00 35.18 1.94
4438 16666 8.814038 ATTATACTGCATCAGAGTTTCCTTTT 57.186 30.769 0.29 0.00 35.18 2.27
4439 16667 8.814038 AATTATACTGCATCAGAGTTTCCTTT 57.186 30.769 0.29 0.00 35.18 3.11
4440 16668 8.814038 AAATTATACTGCATCAGAGTTTCCTT 57.186 30.769 0.29 0.00 35.18 3.36
4441 16669 8.680903 CAAAATTATACTGCATCAGAGTTTCCT 58.319 33.333 0.29 0.00 35.18 3.36
4442 16670 7.433425 GCAAAATTATACTGCATCAGAGTTTCC 59.567 37.037 0.29 0.00 36.09 3.13
4443 16671 7.970061 TGCAAAATTATACTGCATCAGAGTTTC 59.030 33.333 0.29 0.00 41.01 2.78
4444 16672 7.829725 TGCAAAATTATACTGCATCAGAGTTT 58.170 30.769 0.29 0.00 41.01 2.66
4445 16673 7.121759 ACTGCAAAATTATACTGCATCAGAGTT 59.878 33.333 0.29 0.00 44.59 3.01
4446 16674 6.600822 ACTGCAAAATTATACTGCATCAGAGT 59.399 34.615 0.29 0.00 44.59 3.24
4447 16675 7.024340 ACTGCAAAATTATACTGCATCAGAG 57.976 36.000 0.29 0.00 44.59 3.35
4448 16676 7.552330 TGTACTGCAAAATTATACTGCATCAGA 59.448 33.333 0.29 0.00 44.59 3.27
4449 16677 7.696755 TGTACTGCAAAATTATACTGCATCAG 58.303 34.615 2.30 0.00 44.59 2.90
4450 16678 7.336679 ACTGTACTGCAAAATTATACTGCATCA 59.663 33.333 0.00 2.97 44.59 3.07
4451 16679 7.697691 ACTGTACTGCAAAATTATACTGCATC 58.302 34.615 0.00 0.00 44.59 3.91
4452 16680 7.201732 GGACTGTACTGCAAAATTATACTGCAT 60.202 37.037 0.00 0.00 44.59 3.96
4453 16681 6.093495 GGACTGTACTGCAAAATTATACTGCA 59.907 38.462 0.00 1.99 43.54 4.41
4454 16682 6.093495 TGGACTGTACTGCAAAATTATACTGC 59.907 38.462 0.00 0.00 36.60 4.40
4455 16683 7.609760 TGGACTGTACTGCAAAATTATACTG 57.390 36.000 0.00 0.00 0.00 2.74
4456 16684 8.046708 TCATGGACTGTACTGCAAAATTATACT 58.953 33.333 0.00 0.00 0.00 2.12
4457 16685 8.122952 GTCATGGACTGTACTGCAAAATTATAC 58.877 37.037 0.00 0.00 0.00 1.47
4458 16686 8.046708 AGTCATGGACTGTACTGCAAAATTATA 58.953 33.333 0.00 0.00 41.76 0.98
4459 16687 6.886459 AGTCATGGACTGTACTGCAAAATTAT 59.114 34.615 0.00 0.00 41.76 1.28
4460 16688 6.237901 AGTCATGGACTGTACTGCAAAATTA 58.762 36.000 0.00 0.00 41.76 1.40
4461 16689 5.072741 AGTCATGGACTGTACTGCAAAATT 58.927 37.500 0.00 0.00 41.76 1.82
4462 16690 4.655963 AGTCATGGACTGTACTGCAAAAT 58.344 39.130 0.00 0.00 41.76 1.82
4463 16691 4.085357 AGTCATGGACTGTACTGCAAAA 57.915 40.909 0.00 0.00 41.76 2.44
4464 16692 3.769739 AGTCATGGACTGTACTGCAAA 57.230 42.857 0.00 0.00 41.76 3.68
4465 16693 3.070878 TGAAGTCATGGACTGTACTGCAA 59.929 43.478 0.00 0.00 42.59 4.08
4466 16694 2.632512 TGAAGTCATGGACTGTACTGCA 59.367 45.455 0.00 0.00 42.59 4.41
4467 16695 3.319137 TGAAGTCATGGACTGTACTGC 57.681 47.619 0.00 0.00 42.59 4.40
4468 16696 6.808008 AAATTGAAGTCATGGACTGTACTG 57.192 37.500 0.00 0.00 42.59 2.74
4469 16697 7.823745 AAAAATTGAAGTCATGGACTGTACT 57.176 32.000 0.00 0.00 42.59 2.73
4492 16720 4.585581 GTCCAGGGCCTAAACTGTTAAAAA 59.414 41.667 5.28 0.00 32.90 1.94
4493 16721 4.146564 GTCCAGGGCCTAAACTGTTAAAA 58.853 43.478 5.28 0.00 32.90 1.52
4494 16722 3.138653 TGTCCAGGGCCTAAACTGTTAAA 59.861 43.478 5.28 0.00 32.90 1.52
4495 16723 2.712087 TGTCCAGGGCCTAAACTGTTAA 59.288 45.455 5.28 0.00 32.90 2.01
4496 16724 2.039348 GTGTCCAGGGCCTAAACTGTTA 59.961 50.000 5.28 0.00 32.90 2.41
4497 16725 1.145571 TGTCCAGGGCCTAAACTGTT 58.854 50.000 5.28 0.00 32.90 3.16
4498 16726 0.400594 GTGTCCAGGGCCTAAACTGT 59.599 55.000 5.28 0.00 32.90 3.55
4499 16727 0.693049 AGTGTCCAGGGCCTAAACTG 59.307 55.000 5.28 0.34 34.54 3.16
4500 16728 0.693049 CAGTGTCCAGGGCCTAAACT 59.307 55.000 5.28 0.00 0.00 2.66
4501 16729 0.400594 ACAGTGTCCAGGGCCTAAAC 59.599 55.000 5.28 8.24 0.00 2.01
4502 16730 1.145571 AACAGTGTCCAGGGCCTAAA 58.854 50.000 5.28 0.00 0.00 1.85
4503 16731 1.145571 AAACAGTGTCCAGGGCCTAA 58.854 50.000 5.28 0.00 0.00 2.69
4504 16732 0.400213 CAAACAGTGTCCAGGGCCTA 59.600 55.000 5.28 0.00 0.00 3.93
4505 16733 1.151450 CAAACAGTGTCCAGGGCCT 59.849 57.895 0.00 0.00 0.00 5.19
4506 16734 1.903404 CCAAACAGTGTCCAGGGCC 60.903 63.158 0.00 0.00 0.00 5.80
4507 16735 0.467290 TTCCAAACAGTGTCCAGGGC 60.467 55.000 0.00 0.00 0.00 5.19
4508 16736 2.162681 GATTCCAAACAGTGTCCAGGG 58.837 52.381 0.00 0.00 0.00 4.45
4509 16737 2.816087 CAGATTCCAAACAGTGTCCAGG 59.184 50.000 0.00 0.00 0.00 4.45
4510 16738 3.251729 CACAGATTCCAAACAGTGTCCAG 59.748 47.826 0.00 0.00 0.00 3.86
4511 16739 3.118075 TCACAGATTCCAAACAGTGTCCA 60.118 43.478 0.00 0.00 0.00 4.02
4512 16740 3.476552 TCACAGATTCCAAACAGTGTCC 58.523 45.455 0.00 0.00 0.00 4.02
4513 16741 5.499139 TTTCACAGATTCCAAACAGTGTC 57.501 39.130 0.00 0.00 0.00 3.67
4514 16742 5.894807 CTTTTCACAGATTCCAAACAGTGT 58.105 37.500 0.00 0.00 0.00 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.