Multiple sequence alignment - TraesCS7A01G487800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G487800 chr7A 100.000 4167 0 0 920 5086 678151654 678147488 0.000000e+00 7696.0
1 TraesCS7A01G487800 chr7A 100.000 617 0 0 1 617 678152573 678151957 0.000000e+00 1140.0
2 TraesCS7A01G487800 chr7B 91.735 2565 136 27 2575 5086 657865991 657863450 0.000000e+00 3493.0
3 TraesCS7A01G487800 chr7B 93.639 1635 74 19 920 2543 657867760 657866145 0.000000e+00 2416.0
4 TraesCS7A01G487800 chr7B 88.424 622 51 13 1 615 657868401 657867794 0.000000e+00 730.0
5 TraesCS7A01G487800 chr7B 92.000 50 4 0 4897 4946 657863586 657863537 2.540000e-08 71.3
6 TraesCS7A01G487800 chr7D 91.013 2103 138 26 1499 3580 586885783 586883711 0.000000e+00 2789.0
7 TraesCS7A01G487800 chr7D 92.053 604 23 8 920 1503 586886508 586885910 0.000000e+00 826.0
8 TraesCS7A01G487800 chr7D 87.244 635 48 14 1 615 586887157 586886536 0.000000e+00 693.0
9 TraesCS7A01G487800 chr7D 93.168 322 21 1 3845 4165 586883382 586883061 5.960000e-129 472.0
10 TraesCS7A01G487800 chrUn 84.375 96 15 0 4799 4894 17175044 17175139 1.510000e-15 95.3
11 TraesCS7A01G487800 chr3D 97.561 41 1 0 4995 5035 2463646 2463686 2.540000e-08 71.3
12 TraesCS7A01G487800 chr2B 89.474 57 5 1 4992 5047 46657901 46657957 2.540000e-08 71.3
13 TraesCS7A01G487800 chr2D 95.122 41 2 0 4992 5032 28868187 28868227 1.180000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G487800 chr7A 678147488 678152573 5085 True 4418.000 7696 100.0000 1 5086 2 chr7A.!!$R1 5085
1 TraesCS7A01G487800 chr7B 657863450 657868401 4951 True 1677.575 3493 91.4495 1 5086 4 chr7B.!!$R1 5085
2 TraesCS7A01G487800 chr7D 586883061 586887157 4096 True 1195.000 2789 90.8695 1 4165 4 chr7D.!!$R1 4164

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
240 241 0.036952 ATGAACAGGTCGCACTGGAG 60.037 55.000 10.28 0.0 42.75 3.86 F
980 1008 0.468029 ATCCCCAAATCCATCCGCAC 60.468 55.000 0.00 0.0 0.00 5.34 F
1221 1265 1.153127 TCGCTTGGTCACCCGTTTT 60.153 52.632 0.00 0.0 0.00 2.43 F
1460 1504 1.888215 AGTGTTCATGTCAGTGGCAG 58.112 50.000 2.79 0.0 0.00 4.85 F
2343 2528 0.796927 GGCGTGCTTGACTTTAGACC 59.203 55.000 0.00 0.0 0.00 3.85 F
2448 2641 1.089920 CAGCATACCACAACTCTGGC 58.910 55.000 0.00 0.0 34.20 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1863 2043 1.134220 TCAAACGAGCCCCCATGATAC 60.134 52.381 0.0 0.0 0.00 2.24 R
1875 2055 1.522668 TCTGCCAACCATCAAACGAG 58.477 50.000 0.0 0.0 0.00 4.18 R
2042 2223 1.600023 TTTCCACTAACCTGCAACCG 58.400 50.000 0.0 0.0 0.00 4.44 R
2424 2617 2.076863 GAGTTGTGGTATGCTGTCACC 58.923 52.381 0.0 0.0 35.24 4.02 R
3648 3966 0.178924 AAGGCAAATCCCAACCAGCT 60.179 50.000 0.0 0.0 34.51 4.24 R
4272 4748 0.250295 TTTCAAGAGGTCCACCAGCG 60.250 55.000 0.0 0.0 38.89 5.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 6.716934 AGCGAATTGTATTTAGAGAGAGGA 57.283 37.500 0.00 0.00 0.00 3.71
64 65 0.719465 CGTCGTGGGAAGCATGTAAC 59.281 55.000 0.00 0.00 0.00 2.50
100 101 2.121786 GTGTTCGTGCTGTAAACTCGA 58.878 47.619 0.00 0.00 0.00 4.04
157 158 5.942826 GGAAATGGAGAGATTTGTCTTGTCT 59.057 40.000 0.00 0.00 0.00 3.41
158 159 6.432472 GGAAATGGAGAGATTTGTCTTGTCTT 59.568 38.462 0.00 0.00 0.00 3.01
159 160 6.814506 AATGGAGAGATTTGTCTTGTCTTG 57.185 37.500 0.00 0.00 0.00 3.02
160 161 5.296151 TGGAGAGATTTGTCTTGTCTTGT 57.704 39.130 0.00 0.00 0.00 3.16
162 163 4.387256 GGAGAGATTTGTCTTGTCTTGTCG 59.613 45.833 0.00 0.00 0.00 4.35
163 164 4.950050 AGAGATTTGTCTTGTCTTGTCGT 58.050 39.130 0.00 0.00 0.00 4.34
167 168 0.384309 TGTCTTGTCTTGTCGTCGCT 59.616 50.000 0.00 0.00 0.00 4.93
175 176 2.284417 GTCTTGTCGTCGCTTGTTTCTT 59.716 45.455 0.00 0.00 0.00 2.52
191 192 7.043391 GCTTGTTTCTTTTCGAGTTAATTTGCT 60.043 33.333 0.00 0.00 0.00 3.91
216 217 6.545504 ACATATACGATTGTTCTCCATTGC 57.454 37.500 0.00 0.00 0.00 3.56
232 233 0.592637 TTGCAAGCATGAACAGGTCG 59.407 50.000 0.00 0.00 0.00 4.79
233 234 1.154150 GCAAGCATGAACAGGTCGC 60.154 57.895 0.00 0.00 0.00 5.19
240 241 0.036952 ATGAACAGGTCGCACTGGAG 60.037 55.000 10.28 0.00 42.75 3.86
265 266 2.738743 TGGCCAAGATGGGAAAATCTC 58.261 47.619 0.61 0.00 38.19 2.75
285 288 4.340097 TCTCGAAGGTTCAGTGACAAGTTA 59.660 41.667 0.00 0.00 0.00 2.24
286 289 5.010719 TCTCGAAGGTTCAGTGACAAGTTAT 59.989 40.000 0.00 0.00 0.00 1.89
287 290 6.208007 TCTCGAAGGTTCAGTGACAAGTTATA 59.792 38.462 0.00 0.00 0.00 0.98
307 310 9.367444 AGTTATAGAACTAAAACTGTGATTCGG 57.633 33.333 0.00 0.00 44.36 4.30
316 319 1.909302 ACTGTGATTCGGATTCTGGGT 59.091 47.619 2.04 0.00 0.00 4.51
336 339 6.708285 TGGGTTTCTAGTTCCAGTTTAGATC 58.292 40.000 0.00 0.00 0.00 2.75
340 343 7.496263 GGTTTCTAGTTCCAGTTTAGATCATCC 59.504 40.741 0.00 0.00 0.00 3.51
364 370 0.800631 GGGTTTCCGTTTCGATGTCC 59.199 55.000 0.00 0.00 0.00 4.02
386 392 4.586841 CCTAGTTGGATTGGGTTTGTTGAA 59.413 41.667 0.00 0.00 38.35 2.69
387 393 4.670896 AGTTGGATTGGGTTTGTTGAAG 57.329 40.909 0.00 0.00 0.00 3.02
388 394 4.030216 AGTTGGATTGGGTTTGTTGAAGT 58.970 39.130 0.00 0.00 0.00 3.01
389 395 4.099419 AGTTGGATTGGGTTTGTTGAAGTC 59.901 41.667 0.00 0.00 0.00 3.01
390 396 2.962421 TGGATTGGGTTTGTTGAAGTCC 59.038 45.455 0.00 0.00 0.00 3.85
391 397 3.230976 GGATTGGGTTTGTTGAAGTCCT 58.769 45.455 0.00 0.00 0.00 3.85
392 398 3.255888 GGATTGGGTTTGTTGAAGTCCTC 59.744 47.826 0.00 0.00 0.00 3.71
393 399 3.374042 TTGGGTTTGTTGAAGTCCTCA 57.626 42.857 0.00 0.00 0.00 3.86
394 400 3.374042 TGGGTTTGTTGAAGTCCTCAA 57.626 42.857 0.00 0.00 41.93 3.02
395 401 3.702792 TGGGTTTGTTGAAGTCCTCAAA 58.297 40.909 0.00 0.00 45.67 2.69
400 406 6.337356 GGTTTGTTGAAGTCCTCAAATCAAA 58.663 36.000 0.00 0.00 45.67 2.69
403 409 8.542953 GTTTGTTGAAGTCCTCAAATCAAATTC 58.457 33.333 4.27 0.00 45.67 2.17
435 443 8.365399 TGAATCGAATTAGGCTACAAATACAG 57.635 34.615 0.00 0.00 0.00 2.74
448 456 7.167468 GGCTACAAATACAGTGTTGTTTTTCTG 59.833 37.037 0.00 0.00 36.66 3.02
485 494 2.995939 GCTGGCCAAAAGAAATAGTTGC 59.004 45.455 7.01 0.00 0.00 4.17
523 538 4.597507 TCATCTAACCCTGAACCTGAACTT 59.402 41.667 0.00 0.00 0.00 2.66
594 620 2.972505 CCGCCACCATATCGCCAC 60.973 66.667 0.00 0.00 0.00 5.01
974 1002 1.865595 TGCCCTAATCCCCAAATCCAT 59.134 47.619 0.00 0.00 0.00 3.41
976 1004 2.823152 GCCCTAATCCCCAAATCCATCC 60.823 54.545 0.00 0.00 0.00 3.51
980 1008 0.468029 ATCCCCAAATCCATCCGCAC 60.468 55.000 0.00 0.00 0.00 5.34
1119 1147 2.029369 TACAACCACACCGACGCC 59.971 61.111 0.00 0.00 0.00 5.68
1216 1260 2.252072 TATGGCTCGCTTGGTCACCC 62.252 60.000 0.00 0.00 0.00 4.61
1221 1265 1.153127 TCGCTTGGTCACCCGTTTT 60.153 52.632 0.00 0.00 0.00 2.43
1367 1411 2.685100 GAGGTCCGTGGAAAACAGTAG 58.315 52.381 0.00 0.00 0.00 2.57
1377 1421 4.982295 GTGGAAAACAGTAGAATTTGGCAC 59.018 41.667 0.00 0.00 0.00 5.01
1460 1504 1.888215 AGTGTTCATGTCAGTGGCAG 58.112 50.000 2.79 0.00 0.00 4.85
1556 1736 6.549364 TGACAACTGAATATCACCCAAAAAGT 59.451 34.615 0.00 0.00 0.00 2.66
1580 1760 8.049117 AGTAGAATTCCAATATCAGTTGCTTGA 58.951 33.333 0.65 0.00 0.00 3.02
1671 1851 6.127980 CGGACAGTGATTCTGACTAGAAACTA 60.128 42.308 0.00 0.00 45.47 2.24
1672 1852 7.030768 GGACAGTGATTCTGACTAGAAACTAC 58.969 42.308 0.00 0.00 45.47 2.73
1673 1853 7.094118 GGACAGTGATTCTGACTAGAAACTACT 60.094 40.741 0.00 0.00 45.47 2.57
1674 1854 7.822658 ACAGTGATTCTGACTAGAAACTACTC 58.177 38.462 0.00 0.00 45.47 2.59
1675 1855 7.448777 ACAGTGATTCTGACTAGAAACTACTCA 59.551 37.037 0.00 0.00 45.47 3.41
1817 1997 6.840780 AATGTCTGTTAAATCCTCCAAAGG 57.159 37.500 0.00 0.00 44.89 3.11
1863 2043 7.857885 AGAGCAAACTTTAAGATTGTTCTTTCG 59.142 33.333 21.64 0.00 42.62 3.46
1875 2055 1.947456 GTTCTTTCGTATCATGGGGGC 59.053 52.381 0.00 0.00 0.00 5.80
1947 2127 9.396022 GGGTAAGAATAATCTCATTTCTGTGAA 57.604 33.333 0.00 0.00 33.77 3.18
1972 2152 5.257082 TGCTTTACAGTTTTCTTCAACCC 57.743 39.130 0.00 0.00 0.00 4.11
1980 2160 5.127194 ACAGTTTTCTTCAACCCTTTTCTCC 59.873 40.000 0.00 0.00 0.00 3.71
1983 2163 3.402628 TCTTCAACCCTTTTCTCCTCG 57.597 47.619 0.00 0.00 0.00 4.63
1995 2175 6.037281 CCCTTTTCTCCTCGCTTTCTTTATAC 59.963 42.308 0.00 0.00 0.00 1.47
2001 2181 7.036220 TCTCCTCGCTTTCTTTATACTTCAAG 58.964 38.462 0.00 0.00 0.00 3.02
2102 2283 4.088781 GTCGACGAGAGAAAAGCTAAACAG 59.911 45.833 0.00 0.00 0.00 3.16
2117 2298 5.121454 AGCTAAACAGCTTCAAGAAAGATCG 59.879 40.000 0.00 0.00 43.52 3.69
2227 2408 5.428253 ACACTTGAGAACACATACTGTTGT 58.572 37.500 0.00 0.00 43.60 3.32
2299 2481 8.680903 CATATTAACTTGTCTTGAGCCTGAAAT 58.319 33.333 0.00 0.00 0.00 2.17
2302 2484 4.322567 ACTTGTCTTGAGCCTGAAATCTC 58.677 43.478 0.00 0.00 0.00 2.75
2340 2525 3.262420 ACTATGGCGTGCTTGACTTTAG 58.738 45.455 0.00 0.00 0.00 1.85
2343 2528 0.796927 GGCGTGCTTGACTTTAGACC 59.203 55.000 0.00 0.00 0.00 3.85
2353 2538 2.960384 TGACTTTAGACCGTGGTTCTCA 59.040 45.455 0.00 0.00 0.00 3.27
2371 2556 7.765307 GGTTCTCAATTGATAGAAGCAAATCA 58.235 34.615 23.92 0.00 45.26 2.57
2404 2597 7.449704 AGAAGTTATTTGCTTCTCATTGACCTT 59.550 33.333 2.13 0.00 46.76 3.50
2424 2617 8.885722 TGACCTTACTTTAGCAAATATTTACCG 58.114 33.333 0.00 0.00 0.00 4.02
2448 2641 1.089920 CAGCATACCACAACTCTGGC 58.910 55.000 0.00 0.00 34.20 4.85
2483 2676 3.731652 TGCCTGAACATTTCTTTGTGG 57.268 42.857 0.00 0.00 0.00 4.17
2550 2743 6.519353 CAATGCATGCCATGTATTTAACTG 57.481 37.500 16.95 4.44 41.80 3.16
2561 2761 7.771826 GCCATGTATTTAACTGGGAACTTACTA 59.228 37.037 0.00 0.00 31.02 1.82
2572 2881 8.320338 ACTGGGAACTTACTAGTAGCATAAAT 57.680 34.615 2.23 0.00 33.17 1.40
2573 2882 8.422566 ACTGGGAACTTACTAGTAGCATAAATC 58.577 37.037 2.23 0.00 33.17 2.17
2574 2883 8.313944 TGGGAACTTACTAGTAGCATAAATCA 57.686 34.615 2.23 0.00 33.17 2.57
2575 2884 8.421784 TGGGAACTTACTAGTAGCATAAATCAG 58.578 37.037 2.23 0.00 33.17 2.90
2576 2885 8.422566 GGGAACTTACTAGTAGCATAAATCAGT 58.577 37.037 2.23 0.00 33.17 3.41
2601 2916 6.233905 AGTATGTCCATGTGTGCTTATGTA 57.766 37.500 0.00 0.00 0.00 2.29
2605 2920 6.832520 TGTCCATGTGTGCTTATGTAAAAT 57.167 33.333 0.00 0.00 0.00 1.82
2628 2944 9.574516 AAATTTTACTTCAGTAGTCTTGACCAT 57.425 29.630 0.00 0.00 38.33 3.55
2657 2973 7.312657 TCTGATAACTGATGTGAAATGCTTC 57.687 36.000 0.00 0.00 0.00 3.86
2658 2974 7.108194 TCTGATAACTGATGTGAAATGCTTCT 58.892 34.615 0.00 0.00 32.33 2.85
2693 3009 4.392921 AGATACGTGGAGAAAGGATGTG 57.607 45.455 0.00 0.00 0.00 3.21
2729 3045 9.899226 GATATAAAAGACACAATAAATGAGGCC 57.101 33.333 0.00 0.00 0.00 5.19
2730 3046 7.961326 ATAAAAGACACAATAAATGAGGCCT 57.039 32.000 3.86 3.86 0.00 5.19
2744 3060 4.591321 TGAGGCCTCACCAGATAAAATT 57.409 40.909 32.00 0.00 43.14 1.82
2858 3175 6.470877 TCAAATTGTTGACAAGCTTCGTTTAC 59.529 34.615 0.00 2.48 38.88 2.01
2892 3209 5.825593 TGGTTTGAGACTACCAGAGATTT 57.174 39.130 0.00 0.00 39.44 2.17
2893 3210 6.187727 TGGTTTGAGACTACCAGAGATTTT 57.812 37.500 0.00 0.00 39.44 1.82
2935 3253 4.372656 GTTCTGAGAATACCTTGATCCCG 58.627 47.826 0.00 0.00 0.00 5.14
3088 3406 5.476614 TCAATATCAGAGGATGAGCAATCG 58.523 41.667 0.00 0.00 42.53 3.34
3418 3736 7.994911 AGCATGATGTGTTCCTTTTAGATGATA 59.005 33.333 0.00 0.00 0.00 2.15
3422 3740 9.904198 TGATGTGTTCCTTTTAGATGATATTCA 57.096 29.630 0.00 0.00 0.00 2.57
3648 3966 7.931015 AATGGAATATAACTGTCTACCCTCA 57.069 36.000 0.00 0.00 0.00 3.86
3665 3983 0.899717 TCAGCTGGTTGGGATTTGCC 60.900 55.000 15.13 0.00 0.00 4.52
3680 3998 4.263025 GGATTTGCCTTGGGTCTGAATTTT 60.263 41.667 0.00 0.00 0.00 1.82
3773 4093 4.703899 CAGAATTGCAAAGAAAGCACAC 57.296 40.909 1.71 0.00 42.54 3.82
3977 4436 1.887956 GCCTTGCTGAACCTGATGGAA 60.888 52.381 0.00 0.00 37.04 3.53
4177 4637 1.943340 GGTTCTGATTTGCGGATCCTC 59.057 52.381 10.75 1.54 38.30 3.71
4178 4638 2.632377 GTTCTGATTTGCGGATCCTCA 58.368 47.619 10.75 4.97 0.00 3.86
4179 4639 2.609427 TCTGATTTGCGGATCCTCAG 57.391 50.000 17.81 17.81 35.71 3.35
4180 4640 2.110578 TCTGATTTGCGGATCCTCAGA 58.889 47.619 21.03 21.03 39.87 3.27
4182 4642 1.212616 GATTTGCGGATCCTCAGACG 58.787 55.000 10.75 0.00 0.00 4.18
4183 4643 0.537188 ATTTGCGGATCCTCAGACGT 59.463 50.000 10.75 0.00 0.00 4.34
4184 4644 0.108804 TTTGCGGATCCTCAGACGTC 60.109 55.000 7.70 7.70 0.00 4.34
4186 4646 1.064946 GCGGATCCTCAGACGTCAG 59.935 63.158 19.50 10.43 0.00 3.51
4187 4647 1.064946 CGGATCCTCAGACGTCAGC 59.935 63.158 19.50 0.00 0.00 4.26
4212 4688 6.530534 CCTGACATGCTTCTCAATTGAATTTC 59.469 38.462 9.88 3.32 0.00 2.17
4221 4697 3.088532 TCAATTGAATTTCGGAGGTGGG 58.911 45.455 5.45 0.00 0.00 4.61
4226 4702 2.211468 AATTTCGGAGGTGGGGCTCC 62.211 60.000 0.00 0.00 36.45 4.70
4241 4717 3.519913 GGGGCTCCGAGATATTCCTATTT 59.480 47.826 0.00 0.00 0.00 1.40
4246 4722 7.147637 GGGCTCCGAGATATTCCTATTTCTATT 60.148 40.741 0.00 0.00 0.00 1.73
4274 4750 9.162793 CTCTATTCATTCACAATTGTATTTCGC 57.837 33.333 11.53 0.00 0.00 4.70
4275 4751 8.892723 TCTATTCATTCACAATTGTATTTCGCT 58.107 29.630 11.53 0.00 0.00 4.93
4282 4758 3.190535 ACAATTGTATTTCGCTGGTGGAC 59.809 43.478 9.97 0.00 0.00 4.02
4290 4766 1.118965 TCGCTGGTGGACCTCTTGAA 61.119 55.000 0.00 0.00 36.82 2.69
4315 4791 8.483307 AATATTTTGGCATTGAAATCACAGAC 57.517 30.769 0.00 0.00 0.00 3.51
4372 4854 1.269206 CGCAACAAGCCACACTGAATT 60.269 47.619 0.00 0.00 41.38 2.17
4389 4871 8.092687 ACACTGAATTAACACGAGGTAATAAGT 58.907 33.333 3.48 8.00 0.00 2.24
4429 4911 4.084118 GCAAAAGAAGCAACACAACAAACA 60.084 37.500 0.00 0.00 0.00 2.83
4464 4946 7.119407 GGTACAAGAAAAGGGAACTAAGATGAC 59.881 40.741 0.00 0.00 42.68 3.06
4508 4990 1.478510 CCAAGCCGTCAGTGAGATACT 59.521 52.381 0.00 0.00 41.36 2.12
4552 5034 7.979444 TCTAACCTTGTGTCTTAATTTCTGG 57.021 36.000 0.00 0.00 0.00 3.86
4586 5068 4.577693 CGATTGATCTCCAATGTTGTCCAT 59.422 41.667 0.00 0.00 45.00 3.41
4587 5069 5.277683 CGATTGATCTCCAATGTTGTCCATC 60.278 44.000 0.00 0.00 45.00 3.51
4588 5070 4.573021 TGATCTCCAATGTTGTCCATCA 57.427 40.909 0.00 0.00 31.75 3.07
4592 5074 6.438108 TGATCTCCAATGTTGTCCATCAAAAT 59.562 34.615 0.00 0.00 37.81 1.82
4593 5075 7.614974 TGATCTCCAATGTTGTCCATCAAAATA 59.385 33.333 0.00 0.00 37.81 1.40
4629 5112 2.048127 GGACACGTCCTGGACAGC 60.048 66.667 25.42 11.29 46.16 4.40
4630 5113 2.734591 GACACGTCCTGGACAGCA 59.265 61.111 25.42 0.00 32.09 4.41
4633 5116 0.826256 ACACGTCCTGGACAGCAGTA 60.826 55.000 25.42 0.00 32.09 2.74
4641 5124 0.542938 TGGACAGCAGTAGTGGAGCT 60.543 55.000 0.00 0.00 39.63 4.09
4666 5149 0.970937 TTCAACCCGGTGCACCAAAA 60.971 50.000 34.16 15.50 35.14 2.44
4667 5150 0.757188 TCAACCCGGTGCACCAAAAT 60.757 50.000 34.16 15.44 35.14 1.82
4668 5151 0.599728 CAACCCGGTGCACCAAAATG 60.600 55.000 34.16 22.40 35.14 2.32
4669 5152 0.757188 AACCCGGTGCACCAAAATGA 60.757 50.000 34.16 0.00 35.14 2.57
4671 5154 1.288752 CCGGTGCACCAAAATGACC 59.711 57.895 34.16 5.35 35.14 4.02
4672 5155 1.459455 CCGGTGCACCAAAATGACCA 61.459 55.000 34.16 0.00 35.14 4.02
4678 5161 1.416030 GCACCAAAATGACCACCCTTT 59.584 47.619 0.00 0.00 0.00 3.11
4679 5162 2.158827 GCACCAAAATGACCACCCTTTT 60.159 45.455 0.00 0.00 0.00 2.27
4680 5163 3.465871 CACCAAAATGACCACCCTTTTG 58.534 45.455 0.00 0.00 38.81 2.44
4700 5183 3.282885 TGGAAAAACCAAACCAAATGCC 58.717 40.909 0.00 0.00 46.75 4.40
4742 5230 4.112634 GAGTCATCGATCGAATTCAACCA 58.887 43.478 23.50 0.00 0.00 3.67
4808 5296 2.102925 GGAATGAGCAGAAGGAGGAGAG 59.897 54.545 0.00 0.00 0.00 3.20
4823 5311 1.138661 GGAGAGGGATCAGCTGAAGTG 59.861 57.143 22.50 0.00 0.00 3.16
4887 5396 1.936547 GAAGGACAAGCGAATAGGCAG 59.063 52.381 0.00 0.00 34.64 4.85
4906 5454 4.260538 GGCAGAAGCTTCATAAGTTCATCG 60.261 45.833 27.57 3.15 41.70 3.84
4908 5456 5.236047 GCAGAAGCTTCATAAGTTCATCGAT 59.764 40.000 27.57 0.00 37.91 3.59
4948 5496 9.562408 TGTTAAACTACTATGTTTGGTTGATCA 57.438 29.630 0.00 0.00 40.00 2.92
4951 5499 8.691661 AAACTACTATGTTTGGTTGATCAAGT 57.308 30.769 8.80 2.17 38.54 3.16
4952 5500 9.787435 AAACTACTATGTTTGGTTGATCAAGTA 57.213 29.630 8.80 3.31 38.54 2.24
4953 5501 8.773404 ACTACTATGTTTGGTTGATCAAGTAC 57.227 34.615 8.80 5.43 0.00 2.73
4954 5502 7.822822 ACTACTATGTTTGGTTGATCAAGTACC 59.177 37.037 8.80 8.31 0.00 3.34
4955 5503 5.944007 ACTATGTTTGGTTGATCAAGTACCC 59.056 40.000 8.80 7.13 0.00 3.69
4956 5504 4.171878 TGTTTGGTTGATCAAGTACCCA 57.828 40.909 8.80 9.88 0.00 4.51
4957 5505 4.735369 TGTTTGGTTGATCAAGTACCCAT 58.265 39.130 8.80 0.00 0.00 4.00
4958 5506 5.144100 TGTTTGGTTGATCAAGTACCCATT 58.856 37.500 8.80 0.00 0.00 3.16
4959 5507 5.600484 TGTTTGGTTGATCAAGTACCCATTT 59.400 36.000 8.80 0.00 0.00 2.32
4960 5508 6.098982 TGTTTGGTTGATCAAGTACCCATTTT 59.901 34.615 8.80 0.00 0.00 1.82
4961 5509 7.287927 TGTTTGGTTGATCAAGTACCCATTTTA 59.712 33.333 8.80 0.00 0.00 1.52
4962 5510 7.461182 TTGGTTGATCAAGTACCCATTTTAG 57.539 36.000 8.80 0.00 0.00 1.85
4963 5511 6.548321 TGGTTGATCAAGTACCCATTTTAGT 58.452 36.000 8.80 0.00 0.00 2.24
4964 5512 7.007723 TGGTTGATCAAGTACCCATTTTAGTT 58.992 34.615 8.80 0.00 0.00 2.24
4965 5513 7.507616 TGGTTGATCAAGTACCCATTTTAGTTT 59.492 33.333 8.80 0.00 0.00 2.66
4966 5514 8.364894 GGTTGATCAAGTACCCATTTTAGTTTT 58.635 33.333 8.80 0.00 0.00 2.43
4967 5515 9.758651 GTTGATCAAGTACCCATTTTAGTTTTT 57.241 29.630 8.80 0.00 0.00 1.94
5023 5571 6.648725 AACTGCTATGTTTAGTTGATCGAC 57.351 37.500 4.78 4.78 33.69 4.20
5034 5582 9.399797 TGTTTAGTTGATCGACTACCTATCTTA 57.600 33.333 20.50 2.99 32.12 2.10
5039 5587 8.158132 AGTTGATCGACTACCTATCTTATCAGA 58.842 37.037 14.30 0.00 0.00 3.27
5064 5612 5.731599 TTAAAGTGTTGCTGCCATTTTTG 57.268 34.783 0.00 0.00 0.00 2.44
5068 5616 2.031930 GTGTTGCTGCCATTTTTGGTTG 59.968 45.455 0.00 0.00 0.00 3.77
5075 5623 2.239654 TGCCATTTTTGGTTGGGAAACA 59.760 40.909 0.00 0.00 33.40 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 1.370609 CACGACGCTCCTCTCTCTAA 58.629 55.000 0.00 0.00 0.00 2.10
43 44 1.884075 TACATGCTTCCCACGACGCT 61.884 55.000 0.00 0.00 34.45 5.07
64 65 2.099141 ACACCATCATGGAACTCACG 57.901 50.000 11.90 0.00 40.96 4.35
100 101 4.104738 TGGATCTTTCCCAGAGAACTGTTT 59.895 41.667 0.00 0.00 41.83 2.83
157 158 3.676540 GAAAAGAAACAAGCGACGACAA 58.323 40.909 0.00 0.00 0.00 3.18
158 159 2.285371 CGAAAAGAAACAAGCGACGACA 60.285 45.455 0.00 0.00 0.00 4.35
159 160 2.034339 TCGAAAAGAAACAAGCGACGAC 60.034 45.455 0.00 0.00 0.00 4.34
160 161 2.195096 TCGAAAAGAAACAAGCGACGA 58.805 42.857 0.00 0.00 0.00 4.20
162 163 3.587403 ACTCGAAAAGAAACAAGCGAC 57.413 42.857 0.00 0.00 0.00 5.19
163 164 5.721876 TTAACTCGAAAAGAAACAAGCGA 57.278 34.783 0.00 0.00 0.00 4.93
167 168 8.696410 AAGCAAATTAACTCGAAAAGAAACAA 57.304 26.923 0.00 0.00 0.00 2.83
191 192 7.713073 TGCAATGGAGAACAATCGTATATGTAA 59.287 33.333 0.00 0.00 0.00 2.41
200 201 2.095110 TGCTTGCAATGGAGAACAATCG 60.095 45.455 0.00 0.00 0.00 3.34
216 217 0.110056 GTGCGACCTGTTCATGCTTG 60.110 55.000 0.00 0.00 0.00 4.01
232 233 0.394762 TTGGCCATGATCTCCAGTGC 60.395 55.000 6.09 0.00 0.00 4.40
233 234 1.211212 TCTTGGCCATGATCTCCAGTG 59.789 52.381 17.00 0.00 0.00 3.66
240 241 2.369983 TTCCCATCTTGGCCATGATC 57.630 50.000 26.87 0.00 35.79 2.92
265 266 6.387465 TCTATAACTTGTCACTGAACCTTCG 58.613 40.000 0.00 0.00 0.00 3.79
285 288 9.099454 GAATCCGAATCACAGTTTTAGTTCTAT 57.901 33.333 0.00 0.00 0.00 1.98
286 289 8.311836 AGAATCCGAATCACAGTTTTAGTTCTA 58.688 33.333 0.00 0.00 0.00 2.10
287 290 7.118390 CAGAATCCGAATCACAGTTTTAGTTCT 59.882 37.037 0.00 0.00 0.00 3.01
304 307 3.197116 GGAACTAGAAACCCAGAATCCGA 59.803 47.826 0.00 0.00 0.00 4.55
307 310 5.167303 ACTGGAACTAGAAACCCAGAATC 57.833 43.478 21.79 0.00 46.84 2.52
316 319 8.146053 TGGATGATCTAAACTGGAACTAGAAA 57.854 34.615 0.00 0.00 0.00 2.52
336 339 4.201951 CGGAAACCCGTCTGGATG 57.798 61.111 0.00 0.00 42.05 3.51
364 370 5.301805 ACTTCAACAAACCCAATCCAACTAG 59.698 40.000 0.00 0.00 0.00 2.57
373 379 3.374042 TGAGGACTTCAACAAACCCAA 57.626 42.857 0.00 0.00 31.34 4.12
386 392 9.258629 TCATATTTGGAATTTGATTTGAGGACT 57.741 29.630 0.00 0.00 0.00 3.85
387 393 9.874205 TTCATATTTGGAATTTGATTTGAGGAC 57.126 29.630 0.00 0.00 0.00 3.85
400 406 8.641498 AGCCTAATTCGATTCATATTTGGAAT 57.359 30.769 10.27 0.00 37.67 3.01
403 409 8.322906 TGTAGCCTAATTCGATTCATATTTGG 57.677 34.615 3.72 3.72 0.00 3.28
410 416 7.985184 ACTGTATTTGTAGCCTAATTCGATTCA 59.015 33.333 0.00 0.00 0.00 2.57
415 421 6.903883 ACACTGTATTTGTAGCCTAATTCG 57.096 37.500 0.00 0.00 0.00 3.34
416 422 8.040716 ACAACACTGTATTTGTAGCCTAATTC 57.959 34.615 5.43 0.00 34.12 2.17
469 477 2.606108 GGGCGCAACTATTTCTTTTGG 58.394 47.619 10.83 0.00 0.00 3.28
485 494 0.386731 GATGAACAAAACACCGGGCG 60.387 55.000 6.32 0.00 0.00 6.13
523 538 5.526111 CGAAGGGTTTCAGAAAGTTCAGTTA 59.474 40.000 0.00 0.00 32.67 2.24
988 1016 4.910585 GAGCATGTACGGGCCGGG 62.911 72.222 31.78 14.59 0.00 5.73
1216 1260 1.841663 CTCCCTGCACGGTCAAAACG 61.842 60.000 1.44 0.00 37.36 3.60
1221 1265 2.781431 TAGCTCTCCCTGCACGGTCA 62.781 60.000 1.44 0.00 0.00 4.02
1367 1411 1.182667 GTGTAGGGGGTGCCAAATTC 58.817 55.000 0.00 0.00 0.00 2.17
1556 1736 7.283127 GGTCAAGCAACTGATATTGGAATTCTA 59.717 37.037 5.23 0.00 0.00 2.10
1863 2043 1.134220 TCAAACGAGCCCCCATGATAC 60.134 52.381 0.00 0.00 0.00 2.24
1875 2055 1.522668 TCTGCCAACCATCAAACGAG 58.477 50.000 0.00 0.00 0.00 4.18
1947 2127 6.761242 GGGTTGAAGAAAACTGTAAAGCAAAT 59.239 34.615 0.00 0.00 0.00 2.32
1972 2152 7.835634 AGTATAAAGAAAGCGAGGAGAAAAG 57.164 36.000 0.00 0.00 0.00 2.27
1980 2160 5.500931 CGCCTTGAAGTATAAAGAAAGCGAG 60.501 44.000 0.00 0.00 35.18 5.03
1983 2163 4.634443 TCCGCCTTGAAGTATAAAGAAAGC 59.366 41.667 0.00 0.00 0.00 3.51
1995 2175 5.642063 TCAGTAGTTTTATTCCGCCTTGAAG 59.358 40.000 0.00 0.00 0.00 3.02
2001 2181 5.874895 AACTTCAGTAGTTTTATTCCGCC 57.125 39.130 0.00 0.00 44.73 6.13
2027 2208 3.684305 TGCAACCGATACAGAGTGAAATG 59.316 43.478 0.00 0.00 0.00 2.32
2042 2223 1.600023 TTTCCACTAACCTGCAACCG 58.400 50.000 0.00 0.00 0.00 4.44
2102 2283 2.856398 GGCAACGATCTTTCTTGAAGC 58.144 47.619 0.00 0.00 35.24 3.86
2227 2408 7.611467 ACATGATTAAAATAGACAGAGGCAACA 59.389 33.333 0.00 0.00 41.41 3.33
2267 2449 7.255381 GGCTCAAGACAAGTTAATATGCATCAT 60.255 37.037 0.19 0.00 0.00 2.45
2278 2460 5.869579 AGATTTCAGGCTCAAGACAAGTTA 58.130 37.500 0.00 0.00 0.00 2.24
2299 2481 8.251026 CCATAGTTCTAACAACTACACATGAGA 58.749 37.037 0.00 0.00 35.77 3.27
2302 2484 6.237835 CGCCATAGTTCTAACAACTACACATG 60.238 42.308 0.00 0.00 35.77 3.21
2340 2525 4.755411 TCTATCAATTGAGAACCACGGTC 58.245 43.478 14.54 0.00 0.00 4.79
2343 2528 4.631377 TGCTTCTATCAATTGAGAACCACG 59.369 41.667 14.54 2.89 0.00 4.94
2404 2597 7.823310 TGTCACCGGTAAATATTTGCTAAAGTA 59.177 33.333 6.87 0.00 0.00 2.24
2424 2617 2.076863 GAGTTGTGGTATGCTGTCACC 58.923 52.381 0.00 0.00 35.24 4.02
2483 2676 5.582689 AGGAACATTAGCACTTATTTGCC 57.417 39.130 0.00 0.00 44.14 4.52
2543 2736 7.543359 TGCTACTAGTAAGTTCCCAGTTAAA 57.457 36.000 3.76 0.00 37.15 1.52
2545 2738 8.827832 TTATGCTACTAGTAAGTTCCCAGTTA 57.172 34.615 3.76 0.00 37.15 2.24
2546 2739 7.729124 TTATGCTACTAGTAAGTTCCCAGTT 57.271 36.000 3.76 0.00 37.15 3.16
2547 2740 7.729124 TTTATGCTACTAGTAAGTTCCCAGT 57.271 36.000 3.76 0.00 37.15 4.00
2548 2741 8.421784 TGATTTATGCTACTAGTAAGTTCCCAG 58.578 37.037 3.76 0.00 37.15 4.45
2550 2743 8.422566 ACTGATTTATGCTACTAGTAAGTTCCC 58.577 37.037 3.76 0.00 37.15 3.97
2561 2761 8.924303 TGGACATACTAACTGATTTATGCTACT 58.076 33.333 0.00 0.00 0.00 2.57
2564 2764 8.213679 ACATGGACATACTAACTGATTTATGCT 58.786 33.333 0.00 0.00 0.00 3.79
2572 2881 4.222810 AGCACACATGGACATACTAACTGA 59.777 41.667 0.00 0.00 0.00 3.41
2573 2882 4.507710 AGCACACATGGACATACTAACTG 58.492 43.478 0.00 0.00 0.00 3.16
2574 2883 4.826274 AGCACACATGGACATACTAACT 57.174 40.909 0.00 0.00 0.00 2.24
2575 2884 6.538742 ACATAAGCACACATGGACATACTAAC 59.461 38.462 0.00 0.00 0.00 2.34
2576 2885 6.649155 ACATAAGCACACATGGACATACTAA 58.351 36.000 0.00 0.00 0.00 2.24
2578 2887 5.102953 ACATAAGCACACATGGACATACT 57.897 39.130 0.00 0.00 0.00 2.12
2579 2888 6.918892 TTACATAAGCACACATGGACATAC 57.081 37.500 0.00 0.00 0.00 2.39
2580 2889 7.929941 TTTTACATAAGCACACATGGACATA 57.070 32.000 0.00 0.00 0.00 2.29
2581 2890 6.832520 TTTTACATAAGCACACATGGACAT 57.167 33.333 0.00 0.00 0.00 3.06
2601 2916 9.403583 TGGTCAAGACTACTGAAGTAAAATTTT 57.596 29.630 8.75 8.75 39.07 1.82
2605 2920 7.656137 GTGATGGTCAAGACTACTGAAGTAAAA 59.344 37.037 0.00 0.00 39.07 1.52
2628 2944 7.148356 GCATTTCACATCAGTTATCAGAAGTGA 60.148 37.037 0.00 0.00 39.73 3.41
2657 2973 5.175126 CCACGTATCTAAGGCGATTAACAAG 59.825 44.000 0.00 0.00 0.00 3.16
2658 2974 5.045215 CCACGTATCTAAGGCGATTAACAA 58.955 41.667 0.00 0.00 0.00 2.83
2693 3009 2.224314 GTCTTTTATATCGGCAGGCTGC 59.776 50.000 30.93 30.93 44.08 5.25
2744 3060 5.690865 ACCTCTGACACAACCAAAGATTTA 58.309 37.500 0.00 0.00 0.00 1.40
2828 3145 7.022979 CGAAGCTTGTCAACAATTTGATATCA 58.977 34.615 2.10 0.00 43.72 2.15
2837 3154 5.751243 AGTAAACGAAGCTTGTCAACAAT 57.249 34.783 2.10 0.00 35.02 2.71
2840 3157 4.448060 AGCTAGTAAACGAAGCTTGTCAAC 59.552 41.667 2.10 4.91 43.97 3.18
2846 3163 7.064728 CCAGAAAATAGCTAGTAAACGAAGCTT 59.935 37.037 15.19 0.00 43.97 3.74
2858 3175 7.492994 GGTAGTCTCAAACCAGAAAATAGCTAG 59.507 40.741 0.00 0.00 35.73 3.42
2901 3219 7.181125 AGGTATTCTCAGAACCTTCTAACACAT 59.819 37.037 0.00 0.00 40.82 3.21
2912 3230 4.709250 GGGATCAAGGTATTCTCAGAACC 58.291 47.826 0.00 0.00 0.00 3.62
2935 3253 7.986085 ATTTAGCATAACATCCTGTATGGTC 57.014 36.000 0.00 0.00 40.16 4.02
3457 3775 7.148356 GCATCAAATGAAGTGACTGATGAGTTA 60.148 37.037 12.59 0.00 43.93 2.24
3645 3963 0.529378 GCAAATCCCAACCAGCTGAG 59.471 55.000 17.39 8.04 0.00 3.35
3648 3966 0.178924 AAGGCAAATCCCAACCAGCT 60.179 50.000 0.00 0.00 34.51 4.24
3665 3983 7.115414 AGATAAGGAGAAAATTCAGACCCAAG 58.885 38.462 0.00 0.00 0.00 3.61
3705 4023 7.809331 TGACATAAGTTTCAACTGAAATGATGC 59.191 33.333 8.07 8.61 44.69 3.91
3773 4093 0.603707 AGCTCAACACACATGACCGG 60.604 55.000 0.00 0.00 0.00 5.28
3947 4406 0.321346 TCAGCAAGGCGTCTTCATCA 59.679 50.000 0.00 0.00 0.00 3.07
4183 4643 0.978907 TGAGAAGCATGTCAGGCTGA 59.021 50.000 14.43 14.43 41.66 4.26
4184 4644 1.817357 TTGAGAAGCATGTCAGGCTG 58.183 50.000 13.59 8.58 41.66 4.85
4186 4646 2.751259 TCAATTGAGAAGCATGTCAGGC 59.249 45.455 3.38 0.00 29.52 4.85
4187 4647 5.578005 ATTCAATTGAGAAGCATGTCAGG 57.422 39.130 8.41 0.00 29.52 3.86
4221 4697 5.669164 AGAAATAGGAATATCTCGGAGCC 57.331 43.478 0.00 0.00 0.00 4.70
4260 4736 3.190535 GTCCACCAGCGAAATACAATTGT 59.809 43.478 16.68 16.68 0.00 2.71
4272 4748 0.250295 TTTCAAGAGGTCCACCAGCG 60.250 55.000 0.00 0.00 38.89 5.18
4274 4750 6.350445 CCAAAATATTTCAAGAGGTCCACCAG 60.350 42.308 0.10 0.00 38.89 4.00
4275 4751 5.480073 CCAAAATATTTCAAGAGGTCCACCA 59.520 40.000 0.10 0.00 38.89 4.17
4282 4758 8.550710 TTTCAATGCCAAAATATTTCAAGAGG 57.449 30.769 0.10 0.96 0.00 3.69
4290 4766 8.095792 TGTCTGTGATTTCAATGCCAAAATATT 58.904 29.630 0.00 0.00 0.00 1.28
4336 4812 5.512753 TGTTGCGGCAATGTATTAATCAT 57.487 34.783 19.53 0.00 0.00 2.45
4389 4871 7.060383 TCTTTTGCATGGATGGTTAAGAAAA 57.940 32.000 0.00 0.00 0.00 2.29
4429 4911 5.488919 TCCCTTTTCTTGTACCATCTGAGAT 59.511 40.000 0.00 0.00 0.00 2.75
4464 4946 5.163874 GCTTGTGAGAGTTAAGCTGAAGATG 60.164 44.000 0.00 0.00 42.55 2.90
4512 4994 6.827586 AGGTTAGAATCCGAGCTCTTATAG 57.172 41.667 12.85 0.00 0.00 1.31
4514 4996 5.364157 ACAAGGTTAGAATCCGAGCTCTTAT 59.636 40.000 12.85 1.80 0.00 1.73
4552 5034 1.728490 GATCAATCGCAACAGCCCCC 61.728 60.000 0.00 0.00 0.00 5.40
4563 5045 3.940852 TGGACAACATTGGAGATCAATCG 59.059 43.478 0.00 0.00 43.70 3.34
4566 5048 4.920999 TGATGGACAACATTGGAGATCAA 58.079 39.130 0.00 0.00 40.72 2.57
4592 5074 7.574496 GTGTCCACGTATGTTTTATGTGTTTA 58.426 34.615 0.00 0.00 33.76 2.01
4593 5075 6.432107 GTGTCCACGTATGTTTTATGTGTTT 58.568 36.000 0.00 0.00 33.76 2.83
4629 5112 0.254178 AATGGCCAGCTCCACTACTG 59.746 55.000 13.05 0.00 39.25 2.74
4630 5113 0.543749 GAATGGCCAGCTCCACTACT 59.456 55.000 13.05 0.00 39.25 2.57
4633 5116 0.610232 GTTGAATGGCCAGCTCCACT 60.610 55.000 13.05 0.00 39.25 4.00
4641 5124 2.282816 CACCGGGTTGAATGGCCA 60.283 61.111 8.56 8.56 0.00 5.36
4666 5149 3.135712 GGTTTTTCCAAAAGGGTGGTCAT 59.864 43.478 0.00 0.00 39.88 3.06
4667 5150 2.502130 GGTTTTTCCAAAAGGGTGGTCA 59.498 45.455 0.00 0.00 39.88 4.02
4668 5151 2.502130 TGGTTTTTCCAAAAGGGTGGTC 59.498 45.455 0.00 0.00 44.12 4.02
4669 5152 2.552367 TGGTTTTTCCAAAAGGGTGGT 58.448 42.857 0.00 0.00 44.12 4.16
4679 5162 3.282885 GGCATTTGGTTTGGTTTTTCCA 58.717 40.909 0.00 0.00 45.60 3.53
4680 5163 2.621055 GGGCATTTGGTTTGGTTTTTCC 59.379 45.455 0.00 0.00 0.00 3.13
4681 5164 3.282885 TGGGCATTTGGTTTGGTTTTTC 58.717 40.909 0.00 0.00 0.00 2.29
4690 5173 1.208535 CTGCATGATGGGCATTTGGTT 59.791 47.619 0.00 0.00 41.06 3.67
4700 5183 1.805495 CGGACTGAGACTGCATGATGG 60.805 57.143 0.00 0.00 0.00 3.51
4728 5211 7.754069 TTTAAATGCATGGTTGAATTCGATC 57.246 32.000 0.00 0.00 29.09 3.69
4742 5230 7.408910 GCGCTTTTTATTGGATTTAAATGCAT 58.591 30.769 21.18 14.02 36.61 3.96
4808 5296 0.809241 CTCGCACTTCAGCTGATCCC 60.809 60.000 19.04 5.72 0.00 3.85
4823 5311 2.015736 TTTGAGCTCATTCCTCTCGC 57.984 50.000 19.04 0.00 0.00 5.03
4887 5396 7.439655 AGGTAATCGATGAACTTATGAAGCTTC 59.560 37.037 19.89 19.89 0.00 3.86
4940 5488 7.462571 AACTAAAATGGGTACTTGATCAACC 57.537 36.000 3.38 5.20 0.00 3.77
4992 5540 9.116067 TCAACTAAACATAGCAGTTTAACAACT 57.884 29.630 0.00 0.00 44.72 3.16
4993 5541 9.893305 ATCAACTAAACATAGCAGTTTAACAAC 57.107 29.630 0.00 0.00 41.78 3.32
4995 5543 8.440059 CGATCAACTAAACATAGCAGTTTAACA 58.560 33.333 0.00 0.00 41.78 2.41
5034 5582 5.887598 TGGCAGCAACACTTTAATATCTGAT 59.112 36.000 0.00 0.00 0.00 2.90
5039 5587 7.119553 CCAAAAATGGCAGCAACACTTTAATAT 59.880 33.333 0.00 0.00 0.00 1.28
5041 5589 5.239087 CCAAAAATGGCAGCAACACTTTAAT 59.761 36.000 0.00 0.00 0.00 1.40
5047 5595 1.952193 ACCAAAAATGGCAGCAACAC 58.048 45.000 0.00 0.00 0.00 3.32
5048 5596 2.286872 CAACCAAAAATGGCAGCAACA 58.713 42.857 0.00 0.00 0.00 3.33
5049 5597 1.603326 CCAACCAAAAATGGCAGCAAC 59.397 47.619 0.00 0.00 0.00 4.17
5050 5598 1.476471 CCCAACCAAAAATGGCAGCAA 60.476 47.619 0.00 0.00 35.28 3.91
5051 5599 0.108207 CCCAACCAAAAATGGCAGCA 59.892 50.000 0.00 0.00 35.28 4.41
5064 5612 2.545742 GCACAACATCTGTTTCCCAACC 60.546 50.000 0.00 0.00 35.47 3.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.