Multiple sequence alignment - TraesCS7A01G487300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G487300 chr7A 100.000 1729 0 0 871 2599 677838870 677840598 0.000000e+00 3193.0
1 TraesCS7A01G487300 chr7A 100.000 716 0 0 1 716 677838000 677838715 0.000000e+00 1323.0
2 TraesCS7A01G487300 chr7A 79.019 1244 210 41 874 2089 677723849 677722629 0.000000e+00 804.0
3 TraesCS7A01G487300 chr7A 78.656 1265 203 41 871 2089 677821255 677822498 0.000000e+00 778.0
4 TraesCS7A01G487300 chr7A 76.949 1488 251 45 1002 2446 677825336 677826774 0.000000e+00 763.0
5 TraesCS7A01G487300 chr7A 100.000 375 0 0 2823 3197 677840822 677841196 0.000000e+00 693.0
6 TraesCS7A01G487300 chr7A 89.630 135 12 1 3026 3160 678143623 678143491 1.520000e-38 171.0
7 TraesCS7A01G487300 chr7A 86.131 137 15 2 3024 3160 677993565 677993433 9.240000e-31 145.0
8 TraesCS7A01G487300 chr7A 79.259 135 20 6 392 521 202736395 202736264 1.580000e-13 87.9
9 TraesCS7A01G487300 chr7A 85.333 75 11 0 2177 2251 677994097 677994023 9.510000e-11 78.7
10 TraesCS7A01G487300 chr7A 89.474 57 6 0 327 383 701635986 701636042 4.420000e-09 73.1
11 TraesCS7A01G487300 chr7A 93.333 45 3 0 2021 2065 678144631 678144587 2.060000e-07 67.6
12 TraesCS7A01G487300 chr7D 93.506 1740 85 8 871 2599 586754210 586755932 0.000000e+00 2562.0
13 TraesCS7A01G487300 chr7D 81.486 1588 234 37 966 2516 586832337 586830773 0.000000e+00 1249.0
14 TraesCS7A01G487300 chr7D 81.516 1596 204 35 924 2476 586745702 586747249 0.000000e+00 1229.0
15 TraesCS7A01G487300 chr7D 78.627 1151 205 24 966 2088 586508958 586507821 0.000000e+00 725.0
16 TraesCS7A01G487300 chr7D 76.358 1510 260 55 1002 2460 586700213 586701676 0.000000e+00 721.0
17 TraesCS7A01G487300 chr7D 75.255 1370 261 41 910 2249 586688645 586689966 5.940000e-162 580.0
18 TraesCS7A01G487300 chr7D 81.872 673 106 7 1664 2323 586756969 586757638 1.300000e-153 553.0
19 TraesCS7A01G487300 chr7D 88.889 189 14 4 2823 3009 586755952 586756135 3.210000e-55 226.0
20 TraesCS7A01G487300 chr7B 95.233 1028 43 2 1561 2588 657339840 657340861 0.000000e+00 1622.0
21 TraesCS7A01G487300 chr7B 80.535 1346 206 27 1002 2323 657420548 657421861 0.000000e+00 983.0
22 TraesCS7A01G487300 chr7B 92.363 694 43 6 871 1563 657338719 657339403 0.000000e+00 979.0
23 TraesCS7A01G487300 chr7B 77.720 1544 269 39 966 2476 657663315 657661814 0.000000e+00 876.0
24 TraesCS7A01G487300 chr7B 76.890 1640 265 58 871 2443 657313438 657315030 0.000000e+00 824.0
25 TraesCS7A01G487300 chr7B 78.340 1265 198 34 966 2201 656529621 656528404 0.000000e+00 749.0
26 TraesCS7A01G487300 chr7B 76.242 1490 264 45 1002 2456 657084641 657086075 0.000000e+00 708.0
27 TraesCS7A01G487300 chr7B 81.747 893 122 8 1308 2175 657318298 657319174 0.000000e+00 708.0
28 TraesCS7A01G487300 chr7B 88.770 374 35 3 877 1243 657317893 657318266 4.860000e-123 451.0
29 TraesCS7A01G487300 chr7B 94.652 187 9 1 3010 3196 657341159 657341344 4.040000e-74 289.0
30 TraesCS7A01G487300 chr7B 88.321 137 16 0 3024 3160 657660742 657660606 7.090000e-37 165.0
31 TraesCS7A01G487300 chr7B 93.939 99 5 1 2911 3009 657340869 657340966 7.150000e-32 148.0
32 TraesCS7A01G487300 chr6B 84.956 113 15 2 378 489 62405246 62405357 2.610000e-21 113.0
33 TraesCS7A01G487300 chrUn 86.000 100 14 0 390 489 101885693 101885594 1.210000e-19 108.0
34 TraesCS7A01G487300 chr2D 79.231 130 23 3 392 518 385567311 385567439 1.580000e-13 87.9
35 TraesCS7A01G487300 chr4A 92.727 55 4 0 331 385 292922876 292922930 2.640000e-11 80.5
36 TraesCS7A01G487300 chr2A 79.070 129 18 9 392 513 525734673 525734799 2.640000e-11 80.5
37 TraesCS7A01G487300 chr2A 97.297 37 1 0 2563 2599 55076902 55076866 2.660000e-06 63.9
38 TraesCS7A01G487300 chr5A 89.655 58 6 0 331 388 134098248 134098191 1.230000e-09 75.0
39 TraesCS7A01G487300 chr6A 90.566 53 5 0 331 383 175596952 175596900 1.590000e-08 71.3
40 TraesCS7A01G487300 chr6A 97.222 36 1 0 2564 2599 11933538 11933503 9.580000e-06 62.1
41 TraesCS7A01G487300 chr1A 90.566 53 5 0 331 383 458449801 458449749 1.590000e-08 71.3
42 TraesCS7A01G487300 chr1A 97.222 36 1 0 2564 2599 7947716 7947751 9.580000e-06 62.1
43 TraesCS7A01G487300 chr1A 97.222 36 1 0 2564 2599 55005178 55005143 9.580000e-06 62.1
44 TraesCS7A01G487300 chr1A 97.222 36 1 0 2564 2599 539851343 539851308 9.580000e-06 62.1
45 TraesCS7A01G487300 chr4D 88.679 53 6 0 331 383 87726392 87726444 7.400000e-07 65.8
46 TraesCS7A01G487300 chr4B 97.222 36 1 0 2564 2599 366572839 366572804 9.580000e-06 62.1
47 TraesCS7A01G487300 chr4B 97.222 36 1 0 2564 2599 505038949 505038914 9.580000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G487300 chr7A 677838000 677841196 3196 False 1736.333333 3193 100.00000 1 3197 3 chr7A.!!$F3 3196
1 TraesCS7A01G487300 chr7A 677722629 677723849 1220 True 804.000000 804 79.01900 874 2089 1 chr7A.!!$R2 1215
2 TraesCS7A01G487300 chr7A 677821255 677826774 5519 False 770.500000 778 77.80250 871 2446 2 chr7A.!!$F2 1575
3 TraesCS7A01G487300 chr7D 586830773 586832337 1564 True 1249.000000 1249 81.48600 966 2516 1 chr7D.!!$R2 1550
4 TraesCS7A01G487300 chr7D 586745702 586747249 1547 False 1229.000000 1229 81.51600 924 2476 1 chr7D.!!$F3 1552
5 TraesCS7A01G487300 chr7D 586754210 586757638 3428 False 1113.666667 2562 88.08900 871 3009 3 chr7D.!!$F4 2138
6 TraesCS7A01G487300 chr7D 586507821 586508958 1137 True 725.000000 725 78.62700 966 2088 1 chr7D.!!$R1 1122
7 TraesCS7A01G487300 chr7D 586700213 586701676 1463 False 721.000000 721 76.35800 1002 2460 1 chr7D.!!$F2 1458
8 TraesCS7A01G487300 chr7D 586688645 586689966 1321 False 580.000000 580 75.25500 910 2249 1 chr7D.!!$F1 1339
9 TraesCS7A01G487300 chr7B 657420548 657421861 1313 False 983.000000 983 80.53500 1002 2323 1 chr7B.!!$F2 1321
10 TraesCS7A01G487300 chr7B 657338719 657341344 2625 False 759.500000 1622 94.04675 871 3196 4 chr7B.!!$F4 2325
11 TraesCS7A01G487300 chr7B 656528404 656529621 1217 True 749.000000 749 78.34000 966 2201 1 chr7B.!!$R1 1235
12 TraesCS7A01G487300 chr7B 657084641 657086075 1434 False 708.000000 708 76.24200 1002 2456 1 chr7B.!!$F1 1454
13 TraesCS7A01G487300 chr7B 657313438 657319174 5736 False 661.000000 824 82.46900 871 2443 3 chr7B.!!$F3 1572
14 TraesCS7A01G487300 chr7B 657660606 657663315 2709 True 520.500000 876 83.02050 966 3160 2 chr7B.!!$R2 2194

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
207 208 0.105246 ACCATGGGGCTTTGTCCAAA 60.105 50.0 18.09 0.0 37.9 3.28 F
668 669 0.106519 CCCCATCACCACCTCATTCC 60.107 60.0 0.00 0.0 0.0 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2093 11007 0.248539 CTGGTAGTTAGGCTCGACGC 60.249 60.000 0.0 0.0 38.13 5.19 R
2227 11144 1.812922 CAGAGCACCTCACCGATGC 60.813 63.158 0.0 0.0 39.74 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.211288 CTCTCGGGACTGGCGAAT 58.789 61.111 0.00 0.00 0.00 3.34
18 19 1.066587 CTCTCGGGACTGGCGAATC 59.933 63.158 0.00 0.00 0.00 2.52
19 20 2.278857 CTCGGGACTGGCGAATCG 60.279 66.667 0.00 0.00 0.00 3.34
32 33 2.652662 CGAATCGCTAGTCAAATGGC 57.347 50.000 0.00 0.00 0.00 4.40
33 34 2.205074 CGAATCGCTAGTCAAATGGCT 58.795 47.619 0.00 0.00 0.00 4.75
34 35 3.381045 CGAATCGCTAGTCAAATGGCTA 58.619 45.455 0.00 0.00 0.00 3.93
41 42 2.998316 AGTCAAATGGCTAGCTCCTC 57.002 50.000 15.72 0.00 0.00 3.71
42 43 1.488393 AGTCAAATGGCTAGCTCCTCC 59.512 52.381 15.72 0.00 0.00 4.30
43 44 0.839946 TCAAATGGCTAGCTCCTCCC 59.160 55.000 15.72 0.00 0.00 4.30
44 45 0.842635 CAAATGGCTAGCTCCTCCCT 59.157 55.000 15.72 0.00 0.00 4.20
45 46 0.842635 AAATGGCTAGCTCCTCCCTG 59.157 55.000 15.72 0.00 0.00 4.45
46 47 0.327000 AATGGCTAGCTCCTCCCTGT 60.327 55.000 15.72 0.00 0.00 4.00
47 48 0.762461 ATGGCTAGCTCCTCCCTGTC 60.762 60.000 15.72 0.00 0.00 3.51
48 49 2.137528 GGCTAGCTCCTCCCTGTCC 61.138 68.421 15.72 0.00 0.00 4.02
49 50 2.137528 GCTAGCTCCTCCCTGTCCC 61.138 68.421 7.70 0.00 0.00 4.46
50 51 1.458588 CTAGCTCCTCCCTGTCCCC 60.459 68.421 0.00 0.00 0.00 4.81
51 52 3.375443 TAGCTCCTCCCTGTCCCCG 62.375 68.421 0.00 0.00 0.00 5.73
56 57 3.072468 CTCCCTGTCCCCGCGTTA 61.072 66.667 4.92 0.00 0.00 3.18
57 58 3.072468 TCCCTGTCCCCGCGTTAG 61.072 66.667 4.92 0.00 0.00 2.34
58 59 3.072468 CCCTGTCCCCGCGTTAGA 61.072 66.667 4.92 0.00 0.00 2.10
59 60 2.652095 CCCTGTCCCCGCGTTAGAA 61.652 63.158 4.92 0.00 0.00 2.10
60 61 1.153628 CCTGTCCCCGCGTTAGAAG 60.154 63.158 4.92 0.00 0.00 2.85
61 62 1.601419 CCTGTCCCCGCGTTAGAAGA 61.601 60.000 4.92 0.00 0.00 2.87
62 63 0.179134 CTGTCCCCGCGTTAGAAGAG 60.179 60.000 4.92 0.00 0.00 2.85
63 64 1.141234 GTCCCCGCGTTAGAAGAGG 59.859 63.158 4.92 0.00 0.00 3.69
64 65 1.304713 TCCCCGCGTTAGAAGAGGT 60.305 57.895 4.92 0.00 0.00 3.85
65 66 1.141234 CCCCGCGTTAGAAGAGGTC 59.859 63.158 4.92 0.00 0.00 3.85
66 67 1.141234 CCCGCGTTAGAAGAGGTCC 59.859 63.158 4.92 0.00 0.00 4.46
67 68 1.601419 CCCGCGTTAGAAGAGGTCCA 61.601 60.000 4.92 0.00 0.00 4.02
68 69 0.245539 CCGCGTTAGAAGAGGTCCAA 59.754 55.000 4.92 0.00 0.00 3.53
69 70 1.630148 CGCGTTAGAAGAGGTCCAAG 58.370 55.000 0.00 0.00 0.00 3.61
70 71 1.067776 CGCGTTAGAAGAGGTCCAAGT 60.068 52.381 0.00 0.00 0.00 3.16
71 72 2.608268 GCGTTAGAAGAGGTCCAAGTC 58.392 52.381 0.00 0.00 0.00 3.01
72 73 2.029290 GCGTTAGAAGAGGTCCAAGTCA 60.029 50.000 0.00 0.00 0.00 3.41
73 74 3.368531 GCGTTAGAAGAGGTCCAAGTCAT 60.369 47.826 0.00 0.00 0.00 3.06
74 75 4.177026 CGTTAGAAGAGGTCCAAGTCATG 58.823 47.826 0.00 0.00 0.00 3.07
75 76 4.082190 CGTTAGAAGAGGTCCAAGTCATGA 60.082 45.833 0.00 0.00 0.00 3.07
76 77 3.971245 AGAAGAGGTCCAAGTCATGAC 57.029 47.619 18.47 18.47 0.00 3.06
77 78 2.232452 AGAAGAGGTCCAAGTCATGACG 59.768 50.000 19.85 6.97 36.20 4.35
78 79 1.924731 AGAGGTCCAAGTCATGACGA 58.075 50.000 19.85 8.89 36.20 4.20
79 80 2.248248 AGAGGTCCAAGTCATGACGAA 58.752 47.619 19.85 4.47 36.20 3.85
80 81 2.834549 AGAGGTCCAAGTCATGACGAAT 59.165 45.455 19.85 8.01 36.20 3.34
81 82 3.118956 AGAGGTCCAAGTCATGACGAATC 60.119 47.826 19.85 12.15 36.20 2.52
82 83 2.093447 AGGTCCAAGTCATGACGAATCC 60.093 50.000 19.85 17.77 36.20 3.01
83 84 2.354704 GGTCCAAGTCATGACGAATCCA 60.355 50.000 19.85 1.02 36.20 3.41
84 85 3.334691 GTCCAAGTCATGACGAATCCAA 58.665 45.455 19.85 1.19 36.20 3.53
85 86 3.751175 GTCCAAGTCATGACGAATCCAAA 59.249 43.478 19.85 0.00 36.20 3.28
86 87 4.002982 TCCAAGTCATGACGAATCCAAAG 58.997 43.478 19.85 3.56 36.20 2.77
87 88 3.753272 CCAAGTCATGACGAATCCAAAGT 59.247 43.478 19.85 0.00 36.20 2.66
88 89 4.216257 CCAAGTCATGACGAATCCAAAGTT 59.784 41.667 19.85 2.19 36.20 2.66
89 90 5.149273 CAAGTCATGACGAATCCAAAGTTG 58.851 41.667 19.85 10.77 36.20 3.16
90 91 4.389374 AGTCATGACGAATCCAAAGTTGT 58.611 39.130 19.85 0.00 36.20 3.32
91 92 4.452455 AGTCATGACGAATCCAAAGTTGTC 59.548 41.667 19.85 0.00 36.20 3.18
92 93 3.431912 TCATGACGAATCCAAAGTTGTCG 59.568 43.478 0.00 2.17 37.71 4.35
93 94 2.139917 TGACGAATCCAAAGTTGTCGG 58.860 47.619 0.00 0.00 36.06 4.79
94 95 2.224090 TGACGAATCCAAAGTTGTCGGA 60.224 45.455 0.00 0.00 36.06 4.55
95 96 2.412089 GACGAATCCAAAGTTGTCGGAG 59.588 50.000 0.00 0.00 36.06 4.63
96 97 2.036733 ACGAATCCAAAGTTGTCGGAGA 59.963 45.455 0.00 0.00 36.06 3.71
97 98 3.262420 CGAATCCAAAGTTGTCGGAGAT 58.738 45.455 0.00 0.00 40.67 2.75
98 99 3.062639 CGAATCCAAAGTTGTCGGAGATG 59.937 47.826 0.00 0.00 40.67 2.90
99 100 3.981071 ATCCAAAGTTGTCGGAGATGA 57.019 42.857 0.00 0.00 40.67 2.92
100 101 3.319137 TCCAAAGTTGTCGGAGATGAG 57.681 47.619 0.00 0.00 40.67 2.90
101 102 2.897326 TCCAAAGTTGTCGGAGATGAGA 59.103 45.455 0.00 0.00 40.67 3.27
102 103 3.515502 TCCAAAGTTGTCGGAGATGAGAT 59.484 43.478 0.00 0.00 40.67 2.75
103 104 3.868077 CCAAAGTTGTCGGAGATGAGATC 59.132 47.826 0.00 0.00 40.67 2.75
104 105 3.810310 AAGTTGTCGGAGATGAGATCC 57.190 47.619 0.00 0.00 40.67 3.36
105 106 2.739943 AGTTGTCGGAGATGAGATCCA 58.260 47.619 0.00 0.00 40.67 3.41
106 107 2.428890 AGTTGTCGGAGATGAGATCCAC 59.571 50.000 0.00 0.00 40.67 4.02
107 108 2.428890 GTTGTCGGAGATGAGATCCACT 59.571 50.000 0.00 0.00 40.67 4.00
108 109 2.027385 TGTCGGAGATGAGATCCACTG 58.973 52.381 0.00 0.00 40.67 3.66
109 110 1.035923 TCGGAGATGAGATCCACTGC 58.964 55.000 0.00 0.00 36.57 4.40
110 111 1.039068 CGGAGATGAGATCCACTGCT 58.961 55.000 0.00 0.00 36.57 4.24
111 112 1.000385 CGGAGATGAGATCCACTGCTC 60.000 57.143 0.00 0.00 36.57 4.26
112 113 1.000385 GGAGATGAGATCCACTGCTCG 60.000 57.143 0.00 0.00 36.79 5.03
113 114 1.680735 GAGATGAGATCCACTGCTCGT 59.319 52.381 0.00 0.00 33.89 4.18
114 115 1.680735 AGATGAGATCCACTGCTCGTC 59.319 52.381 0.00 0.00 43.95 4.20
115 116 1.406898 GATGAGATCCACTGCTCGTCA 59.593 52.381 0.00 0.00 43.40 4.35
116 117 1.256812 TGAGATCCACTGCTCGTCAA 58.743 50.000 0.00 0.00 33.89 3.18
117 118 1.203287 TGAGATCCACTGCTCGTCAAG 59.797 52.381 0.00 0.00 33.89 3.02
118 119 1.474478 GAGATCCACTGCTCGTCAAGA 59.526 52.381 0.00 0.00 0.00 3.02
119 120 2.100584 GAGATCCACTGCTCGTCAAGAT 59.899 50.000 0.00 0.00 0.00 2.40
120 121 2.159128 AGATCCACTGCTCGTCAAGATG 60.159 50.000 0.00 0.00 0.00 2.90
121 122 0.969149 TCCACTGCTCGTCAAGATGT 59.031 50.000 0.00 0.00 0.00 3.06
122 123 2.167662 TCCACTGCTCGTCAAGATGTA 58.832 47.619 0.00 0.00 0.00 2.29
123 124 2.164422 TCCACTGCTCGTCAAGATGTAG 59.836 50.000 0.00 0.00 0.00 2.74
124 125 2.164422 CCACTGCTCGTCAAGATGTAGA 59.836 50.000 0.00 0.00 0.00 2.59
125 126 3.367395 CCACTGCTCGTCAAGATGTAGAA 60.367 47.826 0.00 0.00 0.00 2.10
126 127 3.856521 CACTGCTCGTCAAGATGTAGAAG 59.143 47.826 0.00 0.00 0.00 2.85
127 128 3.119316 ACTGCTCGTCAAGATGTAGAAGG 60.119 47.826 0.00 0.00 0.00 3.46
128 129 2.197577 GCTCGTCAAGATGTAGAAGGC 58.802 52.381 0.00 0.00 0.00 4.35
129 130 2.815478 CTCGTCAAGATGTAGAAGGCC 58.185 52.381 0.00 0.00 0.00 5.19
130 131 1.134367 TCGTCAAGATGTAGAAGGCCG 59.866 52.381 0.00 0.00 0.00 6.13
131 132 1.802880 CGTCAAGATGTAGAAGGCCGG 60.803 57.143 0.00 0.00 0.00 6.13
132 133 1.480954 GTCAAGATGTAGAAGGCCGGA 59.519 52.381 5.05 0.00 0.00 5.14
133 134 1.757118 TCAAGATGTAGAAGGCCGGAG 59.243 52.381 5.05 0.00 0.00 4.63
134 135 1.757118 CAAGATGTAGAAGGCCGGAGA 59.243 52.381 5.05 0.00 0.00 3.71
135 136 2.366916 CAAGATGTAGAAGGCCGGAGAT 59.633 50.000 5.05 0.00 0.00 2.75
136 137 2.243810 AGATGTAGAAGGCCGGAGATC 58.756 52.381 5.05 0.00 0.00 2.75
137 138 0.962489 ATGTAGAAGGCCGGAGATCG 59.038 55.000 5.05 0.00 38.88 3.69
138 139 0.395311 TGTAGAAGGCCGGAGATCGT 60.395 55.000 5.05 0.00 37.11 3.73
139 140 0.311477 GTAGAAGGCCGGAGATCGTC 59.689 60.000 5.05 0.00 37.11 4.20
140 141 1.164662 TAGAAGGCCGGAGATCGTCG 61.165 60.000 5.05 4.18 37.11 5.12
145 146 2.104331 CCGGAGATCGTCGGTTGG 59.896 66.667 17.71 0.00 41.23 3.77
146 147 2.582498 CGGAGATCGTCGGTTGGC 60.582 66.667 0.00 0.00 0.00 4.52
147 148 2.202892 GGAGATCGTCGGTTGGCC 60.203 66.667 0.00 0.00 0.00 5.36
148 149 2.722201 GGAGATCGTCGGTTGGCCT 61.722 63.158 3.32 0.00 0.00 5.19
149 150 1.227002 GAGATCGTCGGTTGGCCTC 60.227 63.158 3.32 0.00 0.00 4.70
150 151 1.668101 GAGATCGTCGGTTGGCCTCT 61.668 60.000 3.32 0.00 0.00 3.69
151 152 1.519455 GATCGTCGGTTGGCCTCTG 60.519 63.158 3.32 2.33 0.00 3.35
152 153 2.227089 GATCGTCGGTTGGCCTCTGT 62.227 60.000 3.32 0.00 0.00 3.41
153 154 2.507110 ATCGTCGGTTGGCCTCTGTG 62.507 60.000 3.32 0.75 0.00 3.66
154 155 3.050275 GTCGGTTGGCCTCTGTGC 61.050 66.667 3.32 0.00 0.00 4.57
155 156 3.241530 TCGGTTGGCCTCTGTGCT 61.242 61.111 3.32 0.00 0.00 4.40
156 157 1.911269 TCGGTTGGCCTCTGTGCTA 60.911 57.895 3.32 0.00 0.00 3.49
157 158 1.221840 CGGTTGGCCTCTGTGCTAT 59.778 57.895 3.32 0.00 0.00 2.97
158 159 1.091771 CGGTTGGCCTCTGTGCTATG 61.092 60.000 3.32 0.00 0.00 2.23
159 160 1.379642 GGTTGGCCTCTGTGCTATGC 61.380 60.000 3.32 0.00 0.00 3.14
160 161 0.393537 GTTGGCCTCTGTGCTATGCT 60.394 55.000 3.32 0.00 0.00 3.79
161 162 0.329261 TTGGCCTCTGTGCTATGCTT 59.671 50.000 3.32 0.00 0.00 3.91
162 163 0.393402 TGGCCTCTGTGCTATGCTTG 60.393 55.000 3.32 0.00 0.00 4.01
163 164 1.722636 GGCCTCTGTGCTATGCTTGC 61.723 60.000 0.00 0.00 0.00 4.01
164 165 0.747283 GCCTCTGTGCTATGCTTGCT 60.747 55.000 0.00 0.00 0.00 3.91
165 166 1.473965 GCCTCTGTGCTATGCTTGCTA 60.474 52.381 0.00 0.00 0.00 3.49
166 167 2.208431 CCTCTGTGCTATGCTTGCTAC 58.792 52.381 0.00 0.00 0.00 3.58
167 168 2.158986 CCTCTGTGCTATGCTTGCTACT 60.159 50.000 0.00 0.00 0.00 2.57
168 169 2.864946 CTCTGTGCTATGCTTGCTACTG 59.135 50.000 0.00 0.00 0.00 2.74
169 170 2.234661 TCTGTGCTATGCTTGCTACTGT 59.765 45.455 0.00 0.00 0.00 3.55
170 171 2.349590 TGTGCTATGCTTGCTACTGTG 58.650 47.619 0.00 0.00 0.00 3.66
171 172 1.063174 GTGCTATGCTTGCTACTGTGC 59.937 52.381 0.00 0.00 0.00 4.57
172 173 0.659957 GCTATGCTTGCTACTGTGCC 59.340 55.000 0.00 0.00 0.00 5.01
173 174 1.303309 CTATGCTTGCTACTGTGCCC 58.697 55.000 0.00 0.00 0.00 5.36
174 175 0.107214 TATGCTTGCTACTGTGCCCC 60.107 55.000 0.00 0.00 0.00 5.80
175 176 2.034066 GCTTGCTACTGTGCCCCA 59.966 61.111 0.00 0.00 0.00 4.96
176 177 1.379044 GCTTGCTACTGTGCCCCAT 60.379 57.895 0.00 0.00 0.00 4.00
177 178 1.379642 GCTTGCTACTGTGCCCCATC 61.380 60.000 0.00 0.00 0.00 3.51
178 179 0.254178 CTTGCTACTGTGCCCCATCT 59.746 55.000 0.00 0.00 0.00 2.90
179 180 0.253044 TTGCTACTGTGCCCCATCTC 59.747 55.000 0.00 0.00 0.00 2.75
180 181 0.618680 TGCTACTGTGCCCCATCTCT 60.619 55.000 0.00 0.00 0.00 3.10
181 182 1.342975 TGCTACTGTGCCCCATCTCTA 60.343 52.381 0.00 0.00 0.00 2.43
182 183 1.974236 GCTACTGTGCCCCATCTCTAT 59.026 52.381 0.00 0.00 0.00 1.98
183 184 2.370189 GCTACTGTGCCCCATCTCTATT 59.630 50.000 0.00 0.00 0.00 1.73
184 185 3.556004 GCTACTGTGCCCCATCTCTATTC 60.556 52.174 0.00 0.00 0.00 1.75
185 186 2.769209 ACTGTGCCCCATCTCTATTCT 58.231 47.619 0.00 0.00 0.00 2.40
186 187 2.703007 ACTGTGCCCCATCTCTATTCTC 59.297 50.000 0.00 0.00 0.00 2.87
187 188 2.971330 CTGTGCCCCATCTCTATTCTCT 59.029 50.000 0.00 0.00 0.00 3.10
188 189 4.155709 CTGTGCCCCATCTCTATTCTCTA 58.844 47.826 0.00 0.00 0.00 2.43
189 190 3.898123 TGTGCCCCATCTCTATTCTCTAC 59.102 47.826 0.00 0.00 0.00 2.59
190 191 3.259625 GTGCCCCATCTCTATTCTCTACC 59.740 52.174 0.00 0.00 0.00 3.18
191 192 3.116746 TGCCCCATCTCTATTCTCTACCA 60.117 47.826 0.00 0.00 0.00 3.25
192 193 4.100373 GCCCCATCTCTATTCTCTACCAT 58.900 47.826 0.00 0.00 0.00 3.55
193 194 4.081198 GCCCCATCTCTATTCTCTACCATG 60.081 50.000 0.00 0.00 0.00 3.66
194 195 4.469227 CCCCATCTCTATTCTCTACCATGG 59.531 50.000 11.19 11.19 0.00 3.66
195 196 4.469227 CCCATCTCTATTCTCTACCATGGG 59.531 50.000 18.09 0.00 42.53 4.00
196 197 4.469227 CCATCTCTATTCTCTACCATGGGG 59.531 50.000 18.09 8.71 41.29 4.96
197 198 3.511477 TCTCTATTCTCTACCATGGGGC 58.489 50.000 18.09 0.00 37.90 5.80
198 199 3.142977 TCTCTATTCTCTACCATGGGGCT 59.857 47.826 18.09 0.00 37.90 5.19
199 200 3.906846 CTCTATTCTCTACCATGGGGCTT 59.093 47.826 18.09 0.00 37.90 4.35
200 201 4.307259 TCTATTCTCTACCATGGGGCTTT 58.693 43.478 18.09 0.00 37.90 3.51
201 202 2.806945 TTCTCTACCATGGGGCTTTG 57.193 50.000 18.09 1.06 37.90 2.77
202 203 1.668826 TCTCTACCATGGGGCTTTGT 58.331 50.000 18.09 0.00 37.90 2.83
203 204 1.559682 TCTCTACCATGGGGCTTTGTC 59.440 52.381 18.09 0.00 37.90 3.18
204 205 0.623723 TCTACCATGGGGCTTTGTCC 59.376 55.000 18.09 0.00 37.90 4.02
205 206 0.331278 CTACCATGGGGCTTTGTCCA 59.669 55.000 18.09 0.00 37.90 4.02
206 207 0.780637 TACCATGGGGCTTTGTCCAA 59.219 50.000 18.09 0.00 37.90 3.53
207 208 0.105246 ACCATGGGGCTTTGTCCAAA 60.105 50.000 18.09 0.00 37.90 3.28
208 209 1.055040 CCATGGGGCTTTGTCCAAAA 58.945 50.000 2.85 0.00 36.54 2.44
209 210 1.629861 CCATGGGGCTTTGTCCAAAAT 59.370 47.619 2.85 0.00 36.54 1.82
210 211 2.355007 CCATGGGGCTTTGTCCAAAATC 60.355 50.000 2.85 0.00 36.54 2.17
211 212 2.397044 TGGGGCTTTGTCCAAAATCT 57.603 45.000 0.00 0.00 0.00 2.40
212 213 3.534357 TGGGGCTTTGTCCAAAATCTA 57.466 42.857 0.00 0.00 0.00 1.98
213 214 3.161866 TGGGGCTTTGTCCAAAATCTAC 58.838 45.455 0.00 0.00 0.00 2.59
214 215 3.181423 TGGGGCTTTGTCCAAAATCTACT 60.181 43.478 0.00 0.00 0.00 2.57
215 216 3.832490 GGGGCTTTGTCCAAAATCTACTT 59.168 43.478 0.00 0.00 0.00 2.24
216 217 5.014202 GGGGCTTTGTCCAAAATCTACTTA 58.986 41.667 0.00 0.00 0.00 2.24
217 218 5.105877 GGGGCTTTGTCCAAAATCTACTTAC 60.106 44.000 0.00 0.00 0.00 2.34
218 219 5.105877 GGGCTTTGTCCAAAATCTACTTACC 60.106 44.000 0.00 0.00 0.00 2.85
219 220 5.105877 GGCTTTGTCCAAAATCTACTTACCC 60.106 44.000 0.00 0.00 0.00 3.69
220 221 5.391629 GCTTTGTCCAAAATCTACTTACCCG 60.392 44.000 0.00 0.00 0.00 5.28
221 222 4.210724 TGTCCAAAATCTACTTACCCGG 57.789 45.455 0.00 0.00 0.00 5.73
222 223 3.839490 TGTCCAAAATCTACTTACCCGGA 59.161 43.478 0.73 0.00 0.00 5.14
223 224 4.472108 TGTCCAAAATCTACTTACCCGGAT 59.528 41.667 0.73 0.00 0.00 4.18
224 225 5.045432 TGTCCAAAATCTACTTACCCGGATT 60.045 40.000 0.73 0.00 0.00 3.01
225 226 6.156602 TGTCCAAAATCTACTTACCCGGATTA 59.843 38.462 0.73 0.00 0.00 1.75
226 227 6.704937 GTCCAAAATCTACTTACCCGGATTAG 59.295 42.308 0.73 0.00 0.00 1.73
227 228 6.612456 TCCAAAATCTACTTACCCGGATTAGA 59.388 38.462 0.73 1.30 0.00 2.10
228 229 7.126115 TCCAAAATCTACTTACCCGGATTAGAA 59.874 37.037 0.73 0.00 0.00 2.10
229 230 7.937394 CCAAAATCTACTTACCCGGATTAGAAT 59.063 37.037 0.73 0.00 0.00 2.40
230 231 9.338622 CAAAATCTACTTACCCGGATTAGAATT 57.661 33.333 0.73 0.00 0.00 2.17
231 232 9.916360 AAAATCTACTTACCCGGATTAGAATTT 57.084 29.630 0.73 4.28 0.00 1.82
232 233 9.557061 AAATCTACTTACCCGGATTAGAATTTC 57.443 33.333 0.73 0.00 0.00 2.17
233 234 7.664552 TCTACTTACCCGGATTAGAATTTCA 57.335 36.000 0.73 0.00 0.00 2.69
234 235 7.723324 TCTACTTACCCGGATTAGAATTTCAG 58.277 38.462 0.73 0.00 0.00 3.02
235 236 5.681639 ACTTACCCGGATTAGAATTTCAGG 58.318 41.667 0.73 0.00 0.00 3.86
236 237 2.932261 ACCCGGATTAGAATTTCAGGC 58.068 47.619 0.73 0.00 0.00 4.85
237 238 2.509964 ACCCGGATTAGAATTTCAGGCT 59.490 45.455 0.73 0.00 0.00 4.58
238 239 2.880890 CCCGGATTAGAATTTCAGGCTG 59.119 50.000 8.58 8.58 0.00 4.85
239 240 3.433598 CCCGGATTAGAATTTCAGGCTGA 60.434 47.826 14.43 14.43 0.00 4.26
240 241 4.392940 CCGGATTAGAATTTCAGGCTGAT 58.607 43.478 19.50 2.86 0.00 2.90
241 242 4.214971 CCGGATTAGAATTTCAGGCTGATG 59.785 45.833 19.50 0.00 0.00 3.07
242 243 5.059161 CGGATTAGAATTTCAGGCTGATGA 58.941 41.667 19.50 10.75 0.00 2.92
243 244 5.528690 CGGATTAGAATTTCAGGCTGATGAA 59.471 40.000 19.50 11.19 37.41 2.57
244 245 6.512415 CGGATTAGAATTTCAGGCTGATGAAC 60.512 42.308 19.50 10.61 38.87 3.18
245 246 6.319658 GGATTAGAATTTCAGGCTGATGAACA 59.680 38.462 19.50 0.00 38.87 3.18
246 247 6.500684 TTAGAATTTCAGGCTGATGAACAC 57.499 37.500 19.50 8.27 38.87 3.32
247 248 3.760684 AGAATTTCAGGCTGATGAACACC 59.239 43.478 19.50 4.53 38.87 4.16
248 249 2.655090 TTTCAGGCTGATGAACACCA 57.345 45.000 19.50 0.00 38.87 4.17
249 250 2.655090 TTCAGGCTGATGAACACCAA 57.345 45.000 19.50 0.00 34.31 3.67
250 251 2.655090 TCAGGCTGATGAACACCAAA 57.345 45.000 14.43 0.00 0.00 3.28
251 252 3.159213 TCAGGCTGATGAACACCAAAT 57.841 42.857 14.43 0.00 0.00 2.32
252 253 2.821378 TCAGGCTGATGAACACCAAATG 59.179 45.455 14.43 0.00 0.00 2.32
253 254 2.559668 CAGGCTGATGAACACCAAATGT 59.440 45.455 9.42 0.00 46.42 2.71
305 306 7.448748 ACACACAACTTTATATGGGAAGAAC 57.551 36.000 3.30 0.00 0.00 3.01
306 307 6.433093 ACACACAACTTTATATGGGAAGAACC 59.567 38.462 3.30 0.00 38.08 3.62
307 308 6.432783 CACACAACTTTATATGGGAAGAACCA 59.567 38.462 0.00 0.00 46.24 3.67
308 309 7.007723 ACACAACTTTATATGGGAAGAACCAA 58.992 34.615 0.00 0.00 45.13 3.67
309 310 7.507616 ACACAACTTTATATGGGAAGAACCAAA 59.492 33.333 0.00 0.00 45.13 3.28
310 311 8.531146 CACAACTTTATATGGGAAGAACCAAAT 58.469 33.333 0.00 0.00 45.13 2.32
311 312 8.531146 ACAACTTTATATGGGAAGAACCAAATG 58.469 33.333 0.00 0.00 45.13 2.32
312 313 8.531146 CAACTTTATATGGGAAGAACCAAATGT 58.469 33.333 0.00 0.00 45.13 2.71
313 314 8.066612 ACTTTATATGGGAAGAACCAAATGTG 57.933 34.615 0.00 0.00 45.13 3.21
329 330 2.450699 TGGCACCCCACTACCCAA 60.451 61.111 0.00 0.00 35.79 4.12
330 331 2.085562 TGGCACCCCACTACCCAAA 61.086 57.895 0.00 0.00 35.79 3.28
331 332 1.304134 GGCACCCCACTACCCAAAG 60.304 63.158 0.00 0.00 0.00 2.77
332 333 1.977009 GCACCCCACTACCCAAAGC 60.977 63.158 0.00 0.00 0.00 3.51
333 334 1.767692 CACCCCACTACCCAAAGCT 59.232 57.895 0.00 0.00 0.00 3.74
334 335 0.609131 CACCCCACTACCCAAAGCTG 60.609 60.000 0.00 0.00 0.00 4.24
335 336 1.000896 CCCCACTACCCAAAGCTGG 60.001 63.158 0.00 0.00 43.10 4.85
336 337 1.678970 CCCACTACCCAAAGCTGGC 60.679 63.158 0.00 0.00 41.99 4.85
337 338 1.678970 CCACTACCCAAAGCTGGCC 60.679 63.158 0.00 0.00 41.99 5.36
338 339 1.074775 CACTACCCAAAGCTGGCCA 59.925 57.895 4.71 4.71 41.99 5.36
339 340 0.539438 CACTACCCAAAGCTGGCCAA 60.539 55.000 7.01 0.00 41.99 4.52
340 341 0.187361 ACTACCCAAAGCTGGCCAAA 59.813 50.000 7.01 0.00 41.99 3.28
341 342 1.203174 ACTACCCAAAGCTGGCCAAAT 60.203 47.619 7.01 0.00 41.99 2.32
342 343 1.205417 CTACCCAAAGCTGGCCAAATG 59.795 52.381 7.01 3.19 41.99 2.32
343 344 1.297364 CCCAAAGCTGGCCAAATGG 59.703 57.895 7.01 12.56 41.99 3.16
344 345 1.297364 CCAAAGCTGGCCAAATGGG 59.703 57.895 7.01 0.75 35.39 4.00
372 373 4.758251 CATGCCGACCCGTGAGCA 62.758 66.667 0.00 0.00 40.00 4.26
373 374 4.015406 ATGCCGACCCGTGAGCAA 62.015 61.111 0.00 0.00 38.99 3.91
374 375 3.958147 ATGCCGACCCGTGAGCAAG 62.958 63.158 0.00 0.00 38.99 4.01
375 376 4.681978 GCCGACCCGTGAGCAAGT 62.682 66.667 0.00 0.00 0.00 3.16
376 377 2.030562 CCGACCCGTGAGCAAGTT 59.969 61.111 0.00 0.00 0.00 2.66
377 378 2.317609 CCGACCCGTGAGCAAGTTG 61.318 63.158 0.00 0.00 0.00 3.16
378 379 2.317609 CGACCCGTGAGCAAGTTGG 61.318 63.158 4.75 0.00 0.00 3.77
379 380 2.594592 ACCCGTGAGCAAGTTGGC 60.595 61.111 4.75 0.00 0.00 4.52
380 381 2.594303 CCCGTGAGCAAGTTGGCA 60.594 61.111 4.75 0.00 35.83 4.92
381 382 2.639286 CCGTGAGCAAGTTGGCAC 59.361 61.111 4.75 0.00 35.83 5.01
382 383 2.249309 CGTGAGCAAGTTGGCACG 59.751 61.111 4.75 0.00 46.25 5.34
383 384 3.731136 GTGAGCAAGTTGGCACGA 58.269 55.556 4.75 0.00 35.83 4.35
384 385 1.279840 GTGAGCAAGTTGGCACGAC 59.720 57.895 4.75 0.00 35.83 4.34
385 386 2.243957 TGAGCAAGTTGGCACGACG 61.244 57.895 4.75 0.00 35.83 5.12
386 387 3.579626 GAGCAAGTTGGCACGACGC 62.580 63.158 4.75 0.00 41.28 5.19
396 397 3.972803 CACGACGCGCGGCTAATC 61.973 66.667 35.26 20.44 46.49 1.75
406 407 4.849310 GGCTAATCGGGCCGTGCA 62.849 66.667 27.32 7.13 40.19 4.57
407 408 3.272334 GCTAATCGGGCCGTGCAG 61.272 66.667 27.32 20.32 0.00 4.41
408 409 2.588877 CTAATCGGGCCGTGCAGG 60.589 66.667 27.32 9.83 44.97 4.85
409 410 3.385749 CTAATCGGGCCGTGCAGGT 62.386 63.158 27.32 8.29 43.70 4.00
410 411 2.023414 CTAATCGGGCCGTGCAGGTA 62.023 60.000 27.32 4.44 43.70 3.08
411 412 2.300850 TAATCGGGCCGTGCAGGTAC 62.301 60.000 27.32 0.00 43.70 3.34
417 418 4.673298 CCGTGCAGGTACGTGGCA 62.673 66.667 16.75 11.97 42.24 4.92
420 421 2.747022 TGCAGGTACGTGGCACAT 59.253 55.556 19.09 4.55 44.52 3.21
421 422 1.375396 TGCAGGTACGTGGCACATC 60.375 57.895 19.09 6.79 44.52 3.06
422 423 2.106683 GCAGGTACGTGGCACATCC 61.107 63.158 19.09 15.36 44.52 3.51
423 424 1.596934 CAGGTACGTGGCACATCCT 59.403 57.895 19.09 17.29 44.52 3.24
424 425 0.740868 CAGGTACGTGGCACATCCTG 60.741 60.000 26.25 26.25 44.52 3.86
425 426 1.449601 GGTACGTGGCACATCCTGG 60.450 63.158 19.09 2.21 44.52 4.45
426 427 1.449601 GTACGTGGCACATCCTGGG 60.450 63.158 19.09 1.42 44.52 4.45
427 428 2.665089 TACGTGGCACATCCTGGGG 61.665 63.158 19.09 0.63 44.52 4.96
433 434 4.415150 CACATCCTGGGGCGTGCT 62.415 66.667 0.00 0.00 0.00 4.40
434 435 3.650950 ACATCCTGGGGCGTGCTT 61.651 61.111 0.00 0.00 0.00 3.91
435 436 3.136123 CATCCTGGGGCGTGCTTG 61.136 66.667 0.00 0.00 0.00 4.01
436 437 3.329889 ATCCTGGGGCGTGCTTGA 61.330 61.111 0.00 0.00 0.00 3.02
437 438 3.335356 ATCCTGGGGCGTGCTTGAG 62.335 63.158 0.00 0.00 0.00 3.02
439 440 4.711949 CTGGGGCGTGCTTGAGCT 62.712 66.667 4.44 0.00 42.66 4.09
443 444 2.434884 GGCGTGCTTGAGCTGCTA 60.435 61.111 0.15 0.00 42.66 3.49
444 445 2.459442 GGCGTGCTTGAGCTGCTAG 61.459 63.158 0.15 0.00 42.66 3.42
445 446 2.459442 GCGTGCTTGAGCTGCTAGG 61.459 63.158 0.15 0.00 42.66 3.02
446 447 2.459442 CGTGCTTGAGCTGCTAGGC 61.459 63.158 0.15 8.05 42.66 3.93
447 448 1.078567 GTGCTTGAGCTGCTAGGCT 60.079 57.895 0.15 0.00 46.11 4.58
448 449 1.078637 TGCTTGAGCTGCTAGGCTG 60.079 57.895 0.15 0.00 43.20 4.85
449 450 1.220206 GCTTGAGCTGCTAGGCTGA 59.780 57.895 0.15 0.00 43.20 4.26
450 451 0.810823 GCTTGAGCTGCTAGGCTGAG 60.811 60.000 0.15 0.00 43.20 3.35
451 452 0.810823 CTTGAGCTGCTAGGCTGAGC 60.811 60.000 0.15 0.00 43.20 4.26
457 458 4.719997 GCTAGGCTGAGCACGTAG 57.280 61.111 6.82 5.09 42.36 3.51
458 459 1.066587 GCTAGGCTGAGCACGTAGG 59.933 63.158 6.82 0.00 42.36 3.18
459 460 1.066587 CTAGGCTGAGCACGTAGGC 59.933 63.158 6.82 1.56 39.54 3.93
461 462 2.510238 GGCTGAGCACGTAGGCTG 60.510 66.667 6.82 0.00 45.99 4.85
462 463 2.510238 GCTGAGCACGTAGGCTGG 60.510 66.667 4.95 0.00 45.99 4.85
463 464 2.510238 CTGAGCACGTAGGCTGGC 60.510 66.667 4.95 0.00 45.99 4.85
464 465 3.300934 CTGAGCACGTAGGCTGGCA 62.301 63.158 4.95 0.00 45.99 4.92
465 466 2.815647 GAGCACGTAGGCTGGCAC 60.816 66.667 4.95 0.00 45.99 5.01
466 467 4.742201 AGCACGTAGGCTGGCACG 62.742 66.667 18.87 18.87 43.89 5.34
483 484 4.926207 GGCACGACCCGTTTATCT 57.074 55.556 0.00 0.00 38.32 1.98
484 485 3.148340 GGCACGACCCGTTTATCTT 57.852 52.632 0.00 0.00 38.32 2.40
485 486 1.445871 GGCACGACCCGTTTATCTTT 58.554 50.000 0.00 0.00 38.32 2.52
486 487 1.808343 GGCACGACCCGTTTATCTTTT 59.192 47.619 0.00 0.00 38.32 2.27
487 488 2.227149 GGCACGACCCGTTTATCTTTTT 59.773 45.455 0.00 0.00 38.32 1.94
488 489 3.485633 GCACGACCCGTTTATCTTTTTC 58.514 45.455 0.00 0.00 38.32 2.29
489 490 3.058777 GCACGACCCGTTTATCTTTTTCA 60.059 43.478 0.00 0.00 38.32 2.69
490 491 4.379082 GCACGACCCGTTTATCTTTTTCAT 60.379 41.667 0.00 0.00 38.32 2.57
491 492 5.695818 CACGACCCGTTTATCTTTTTCATT 58.304 37.500 0.00 0.00 38.32 2.57
492 493 6.621164 GCACGACCCGTTTATCTTTTTCATTA 60.621 38.462 0.00 0.00 38.32 1.90
493 494 7.469260 CACGACCCGTTTATCTTTTTCATTAT 58.531 34.615 0.00 0.00 38.32 1.28
494 495 7.966204 CACGACCCGTTTATCTTTTTCATTATT 59.034 33.333 0.00 0.00 38.32 1.40
495 496 8.517056 ACGACCCGTTTATCTTTTTCATTATTT 58.483 29.630 0.00 0.00 36.35 1.40
496 497 9.349145 CGACCCGTTTATCTTTTTCATTATTTT 57.651 29.630 0.00 0.00 0.00 1.82
541 542 3.059352 GGCATAATACCAGCCCAGTAG 57.941 52.381 0.00 0.00 42.58 2.57
542 543 2.290323 GGCATAATACCAGCCCAGTAGG 60.290 54.545 0.00 0.00 42.58 3.18
543 544 2.372172 GCATAATACCAGCCCAGTAGGT 59.628 50.000 0.00 0.00 38.26 3.08
544 545 3.581332 GCATAATACCAGCCCAGTAGGTA 59.419 47.826 0.00 0.00 41.72 3.08
545 546 4.041198 GCATAATACCAGCCCAGTAGGTAA 59.959 45.833 0.00 0.00 40.93 2.85
546 547 5.455612 GCATAATACCAGCCCAGTAGGTAAA 60.456 44.000 0.00 0.00 40.93 2.01
547 548 6.597562 CATAATACCAGCCCAGTAGGTAAAA 58.402 40.000 0.00 0.00 40.93 1.52
548 549 5.523883 AATACCAGCCCAGTAGGTAAAAA 57.476 39.130 0.00 0.00 40.93 1.94
549 550 5.727243 ATACCAGCCCAGTAGGTAAAAAT 57.273 39.130 0.00 0.00 40.93 1.82
550 551 6.835029 ATACCAGCCCAGTAGGTAAAAATA 57.165 37.500 0.00 0.00 40.93 1.40
551 552 5.112129 ACCAGCCCAGTAGGTAAAAATAG 57.888 43.478 0.00 0.00 38.26 1.73
552 553 4.079958 ACCAGCCCAGTAGGTAAAAATAGG 60.080 45.833 0.00 0.00 38.26 2.57
553 554 3.883489 CAGCCCAGTAGGTAAAAATAGGC 59.117 47.826 0.00 0.00 38.26 3.93
554 555 3.117625 AGCCCAGTAGGTAAAAATAGGCC 60.118 47.826 0.00 0.00 38.67 5.19
555 556 3.372241 GCCCAGTAGGTAAAAATAGGCCA 60.372 47.826 5.01 0.00 38.26 5.36
556 557 4.461198 CCCAGTAGGTAAAAATAGGCCAG 58.539 47.826 5.01 0.00 0.00 4.85
557 558 3.883489 CCAGTAGGTAAAAATAGGCCAGC 59.117 47.826 5.01 0.00 0.00 4.85
558 559 4.523083 CAGTAGGTAAAAATAGGCCAGCA 58.477 43.478 5.01 0.00 0.00 4.41
559 560 4.947388 CAGTAGGTAAAAATAGGCCAGCAA 59.053 41.667 5.01 0.00 0.00 3.91
560 561 5.066505 CAGTAGGTAAAAATAGGCCAGCAAG 59.933 44.000 5.01 0.00 0.00 4.01
561 562 2.760650 AGGTAAAAATAGGCCAGCAAGC 59.239 45.455 5.01 0.00 0.00 4.01
569 570 3.132084 GCCAGCAAGCCAAACAGT 58.868 55.556 0.00 0.00 0.00 3.55
570 571 2.340427 GCCAGCAAGCCAAACAGTA 58.660 52.632 0.00 0.00 0.00 2.74
571 572 0.242017 GCCAGCAAGCCAAACAGTAG 59.758 55.000 0.00 0.00 0.00 2.57
572 573 0.883833 CCAGCAAGCCAAACAGTAGG 59.116 55.000 0.00 0.00 0.00 3.18
573 574 1.609208 CAGCAAGCCAAACAGTAGGT 58.391 50.000 0.00 0.00 0.00 3.08
574 575 1.267806 CAGCAAGCCAAACAGTAGGTG 59.732 52.381 0.00 0.00 0.00 4.00
575 576 0.598065 GCAAGCCAAACAGTAGGTGG 59.402 55.000 0.00 0.00 35.39 4.61
576 577 1.247567 CAAGCCAAACAGTAGGTGGG 58.752 55.000 0.00 0.00 32.71 4.61
577 578 0.539669 AAGCCAAACAGTAGGTGGGC 60.540 55.000 0.00 0.00 46.08 5.36
578 579 1.977009 GCCAAACAGTAGGTGGGCC 60.977 63.158 0.00 0.00 42.18 5.80
580 581 0.988832 CCAAACAGTAGGTGGGCCTA 59.011 55.000 4.53 0.00 44.90 3.93
586 587 4.023137 TAGGTGGGCCTACGTGAC 57.977 61.111 23.09 4.93 44.90 3.67
587 588 1.385368 TAGGTGGGCCTACGTGACT 59.615 57.895 23.09 12.21 44.90 3.41
588 589 0.968901 TAGGTGGGCCTACGTGACTG 60.969 60.000 23.09 0.00 44.90 3.51
589 590 2.264794 GTGGGCCTACGTGACTGG 59.735 66.667 2.40 0.00 0.00 4.00
590 591 3.702048 TGGGCCTACGTGACTGGC 61.702 66.667 4.53 12.98 45.42 4.85
591 592 4.814294 GGGCCTACGTGACTGGCG 62.814 72.222 0.84 0.00 46.97 5.69
592 593 4.814294 GGCCTACGTGACTGGCGG 62.814 72.222 14.31 0.00 46.97 6.13
593 594 4.814294 GCCTACGTGACTGGCGGG 62.814 72.222 0.00 0.00 37.11 6.13
594 595 4.814294 CCTACGTGACTGGCGGGC 62.814 72.222 0.00 0.00 0.00 6.13
595 596 4.814294 CTACGTGACTGGCGGGCC 62.814 72.222 1.86 1.86 0.00 5.80
620 621 3.880846 CGGCCCGATTTGCAGCTC 61.881 66.667 0.00 0.00 0.00 4.09
621 622 3.880846 GGCCCGATTTGCAGCTCG 61.881 66.667 11.74 11.74 34.73 5.03
624 625 3.126879 CCGATTTGCAGCTCGGCA 61.127 61.111 21.40 0.00 46.87 5.69
625 626 2.099062 CGATTTGCAGCTCGGCAC 59.901 61.111 11.04 0.00 44.86 5.01
638 639 2.816718 GGCACGGCCGGTCTAATA 59.183 61.111 31.76 0.00 39.62 0.98
639 640 1.144496 GGCACGGCCGGTCTAATAA 59.856 57.895 31.76 0.00 39.62 1.40
640 641 1.156034 GGCACGGCCGGTCTAATAAC 61.156 60.000 31.76 7.04 39.62 1.89
641 642 1.156034 GCACGGCCGGTCTAATAACC 61.156 60.000 31.76 0.62 35.86 2.85
649 650 1.296727 GGTCTAATAACCGTGCTGGC 58.703 55.000 0.00 0.00 43.94 4.85
650 651 1.296727 GTCTAATAACCGTGCTGGCC 58.703 55.000 0.00 0.00 43.94 5.36
651 652 0.179468 TCTAATAACCGTGCTGGCCC 59.821 55.000 0.00 0.00 43.94 5.80
652 653 0.818040 CTAATAACCGTGCTGGCCCC 60.818 60.000 0.00 0.00 43.94 5.80
653 654 1.563577 TAATAACCGTGCTGGCCCCA 61.564 55.000 0.00 0.00 43.94 4.96
654 655 2.223464 AATAACCGTGCTGGCCCCAT 62.223 55.000 0.00 0.00 43.94 4.00
655 656 2.624674 ATAACCGTGCTGGCCCCATC 62.625 60.000 0.00 0.00 43.94 3.51
659 660 4.365111 GTGCTGGCCCCATCACCA 62.365 66.667 9.55 0.00 37.17 4.17
660 661 4.365111 TGCTGGCCCCATCACCAC 62.365 66.667 0.00 0.00 0.00 4.16
662 663 3.341629 CTGGCCCCATCACCACCT 61.342 66.667 0.00 0.00 0.00 4.00
663 664 3.338250 TGGCCCCATCACCACCTC 61.338 66.667 0.00 0.00 0.00 3.85
664 665 3.338250 GGCCCCATCACCACCTCA 61.338 66.667 0.00 0.00 0.00 3.86
665 666 2.693871 GGCCCCATCACCACCTCAT 61.694 63.158 0.00 0.00 0.00 2.90
666 667 1.307647 GCCCCATCACCACCTCATT 59.692 57.895 0.00 0.00 0.00 2.57
667 668 0.753111 GCCCCATCACCACCTCATTC 60.753 60.000 0.00 0.00 0.00 2.67
668 669 0.106519 CCCCATCACCACCTCATTCC 60.107 60.000 0.00 0.00 0.00 3.01
669 670 0.106519 CCCATCACCACCTCATTCCC 60.107 60.000 0.00 0.00 0.00 3.97
670 671 0.106519 CCATCACCACCTCATTCCCC 60.107 60.000 0.00 0.00 0.00 4.81
671 672 0.625316 CATCACCACCTCATTCCCCA 59.375 55.000 0.00 0.00 0.00 4.96
672 673 1.216175 CATCACCACCTCATTCCCCAT 59.784 52.381 0.00 0.00 0.00 4.00
673 674 1.381867 TCACCACCTCATTCCCCATT 58.618 50.000 0.00 0.00 0.00 3.16
674 675 2.567862 TCACCACCTCATTCCCCATTA 58.432 47.619 0.00 0.00 0.00 1.90
675 676 2.509548 TCACCACCTCATTCCCCATTAG 59.490 50.000 0.00 0.00 0.00 1.73
676 677 2.242196 CACCACCTCATTCCCCATTAGT 59.758 50.000 0.00 0.00 0.00 2.24
677 678 2.509964 ACCACCTCATTCCCCATTAGTC 59.490 50.000 0.00 0.00 0.00 2.59
678 679 2.780010 CCACCTCATTCCCCATTAGTCT 59.220 50.000 0.00 0.00 0.00 3.24
679 680 3.203040 CCACCTCATTCCCCATTAGTCTT 59.797 47.826 0.00 0.00 0.00 3.01
680 681 4.202441 CACCTCATTCCCCATTAGTCTTG 58.798 47.826 0.00 0.00 0.00 3.02
681 682 3.852578 ACCTCATTCCCCATTAGTCTTGT 59.147 43.478 0.00 0.00 0.00 3.16
682 683 4.080299 ACCTCATTCCCCATTAGTCTTGTC 60.080 45.833 0.00 0.00 0.00 3.18
683 684 4.164988 CCTCATTCCCCATTAGTCTTGTCT 59.835 45.833 0.00 0.00 0.00 3.41
684 685 5.359194 TCATTCCCCATTAGTCTTGTCTC 57.641 43.478 0.00 0.00 0.00 3.36
685 686 4.782691 TCATTCCCCATTAGTCTTGTCTCA 59.217 41.667 0.00 0.00 0.00 3.27
686 687 5.250543 TCATTCCCCATTAGTCTTGTCTCAA 59.749 40.000 0.00 0.00 0.00 3.02
687 688 5.576563 TTCCCCATTAGTCTTGTCTCAAA 57.423 39.130 0.00 0.00 0.00 2.69
688 689 5.576563 TCCCCATTAGTCTTGTCTCAAAA 57.423 39.130 0.00 0.00 0.00 2.44
689 690 5.947663 TCCCCATTAGTCTTGTCTCAAAAA 58.052 37.500 0.00 0.00 0.00 1.94
953 971 1.205460 ACCCTACCAATTCCAGCCGT 61.205 55.000 0.00 0.00 0.00 5.68
1101 1125 3.923864 AAGTGCGTCTGCCCGACA 61.924 61.111 4.43 0.00 42.98 4.35
1473 5924 1.071814 TCGCGCTTACCTGGGTTTT 59.928 52.632 5.56 0.00 0.00 2.43
1516 5967 8.601845 TCAAGAGTTTCATCTGTTCGAATTTA 57.398 30.769 0.00 0.00 0.00 1.40
1779 6727 1.084289 CGGGTTTCATCGGAAAGTCC 58.916 55.000 0.00 0.00 43.35 3.85
1827 6778 3.004839 CCGACGATACTGAAGGACATGAT 59.995 47.826 0.00 0.00 0.00 2.45
1828 6779 3.977579 CGACGATACTGAAGGACATGATG 59.022 47.826 0.00 0.00 0.00 3.07
1872 6823 2.870411 AGTTTACGTTCTTGGTGCTGAC 59.130 45.455 0.00 0.00 0.00 3.51
2092 11006 5.750547 CGTCATGAGAGCACAGTTGTATATT 59.249 40.000 0.00 0.00 0.00 1.28
2093 11007 6.292008 CGTCATGAGAGCACAGTTGTATATTG 60.292 42.308 0.00 0.00 0.00 1.90
2097 11011 3.865745 AGAGCACAGTTGTATATTGCGTC 59.134 43.478 0.00 0.00 38.26 5.19
2221 11138 7.750229 TGAATGTTCTGCTGATTAGAAGTTT 57.250 32.000 0.00 0.00 35.03 2.66
2227 11144 3.084039 TGCTGATTAGAAGTTTGGCAGG 58.916 45.455 0.00 0.00 0.00 4.85
2262 11189 3.305629 GCTCTGTTGCGAGAGTATTCTTG 59.694 47.826 8.52 0.00 41.50 3.02
2358 11641 8.983724 GTTCTGTACTCATTTTCATATCTAGGC 58.016 37.037 0.00 0.00 0.00 3.93
2476 11873 8.958119 TGAGACTTTAGTGTGTTCTATTTTGT 57.042 30.769 0.00 0.00 0.00 2.83
2560 12052 5.709631 TGTGCACACATTATCTACATTGGTT 59.290 36.000 17.42 0.00 36.21 3.67
2851 12350 8.743085 AGATTCATAGAAGTTTGCATACATGT 57.257 30.769 10.02 2.69 0.00 3.21
2865 12364 5.946298 GCATACATGTGCAGCATATAATGT 58.054 37.500 19.45 17.73 44.43 2.71
2866 12365 5.798434 GCATACATGTGCAGCATATAATGTG 59.202 40.000 19.45 13.89 44.43 3.21
2867 12366 6.348704 GCATACATGTGCAGCATATAATGTGA 60.349 38.462 19.45 9.60 44.43 3.58
2868 12367 7.627726 GCATACATGTGCAGCATATAATGTGAT 60.628 37.037 19.45 10.76 44.43 3.06
2897 12396 3.817084 TCTCAAAAGGCTGAGACAATGTG 59.183 43.478 0.00 0.00 45.45 3.21
2941 12441 6.823689 TCCTAGCTGGTTTATCAGAAAATGAC 59.176 38.462 0.00 0.00 37.70 3.06
2978 12478 4.405358 TGGGACTTGAACAATTTCTTGCTT 59.595 37.500 0.00 0.00 35.69 3.91
3035 12765 7.827236 ACGAAATTGAAAACCATCTGTAGGATA 59.173 33.333 0.00 0.00 32.64 2.59
3039 12769 9.699410 AATTGAAAACCATCTGTAGGATATTCA 57.301 29.630 0.00 0.00 32.64 2.57
3043 12773 8.915057 AAAACCATCTGTAGGATATTCATCTG 57.085 34.615 0.00 0.00 32.64 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.771639 CGATTCGCCAGTCCCGAGA 61.772 63.158 0.00 0.00 35.96 4.04
2 3 2.278857 CGATTCGCCAGTCCCGAG 60.279 66.667 0.00 0.00 35.96 4.63
13 14 2.205074 AGCCATTTGACTAGCGATTCG 58.795 47.619 0.62 0.62 0.00 3.34
14 15 4.981389 CTAGCCATTTGACTAGCGATTC 57.019 45.455 0.00 0.00 30.24 2.52
20 21 3.244044 GGAGGAGCTAGCCATTTGACTAG 60.244 52.174 12.13 0.00 39.13 2.57
21 22 2.700897 GGAGGAGCTAGCCATTTGACTA 59.299 50.000 12.13 0.00 0.00 2.59
22 23 1.488393 GGAGGAGCTAGCCATTTGACT 59.512 52.381 12.13 0.00 0.00 3.41
23 24 1.475930 GGGAGGAGCTAGCCATTTGAC 60.476 57.143 12.13 0.00 0.00 3.18
24 25 0.839946 GGGAGGAGCTAGCCATTTGA 59.160 55.000 12.13 0.00 0.00 2.69
25 26 0.842635 AGGGAGGAGCTAGCCATTTG 59.157 55.000 12.13 0.00 0.00 2.32
26 27 0.842635 CAGGGAGGAGCTAGCCATTT 59.157 55.000 12.13 0.00 0.00 2.32
27 28 0.327000 ACAGGGAGGAGCTAGCCATT 60.327 55.000 12.13 0.00 0.00 3.16
28 29 0.762461 GACAGGGAGGAGCTAGCCAT 60.762 60.000 12.13 0.00 0.00 4.40
29 30 1.381872 GACAGGGAGGAGCTAGCCA 60.382 63.158 12.13 0.00 0.00 4.75
30 31 2.137528 GGACAGGGAGGAGCTAGCC 61.138 68.421 12.13 2.59 0.00 3.93
31 32 2.137528 GGGACAGGGAGGAGCTAGC 61.138 68.421 6.62 6.62 0.00 3.42
32 33 1.458588 GGGGACAGGGAGGAGCTAG 60.459 68.421 0.00 0.00 0.00 3.42
33 34 2.696893 GGGGACAGGGAGGAGCTA 59.303 66.667 0.00 0.00 0.00 3.32
34 35 4.787280 CGGGGACAGGGAGGAGCT 62.787 72.222 0.00 0.00 0.00 4.09
39 40 3.072468 TAACGCGGGGACAGGGAG 61.072 66.667 12.47 0.00 0.00 4.30
40 41 3.072468 CTAACGCGGGGACAGGGA 61.072 66.667 12.47 0.00 0.00 4.20
41 42 2.573609 CTTCTAACGCGGGGACAGGG 62.574 65.000 12.47 0.00 0.00 4.45
42 43 1.153628 CTTCTAACGCGGGGACAGG 60.154 63.158 12.47 0.00 0.00 4.00
43 44 0.179134 CTCTTCTAACGCGGGGACAG 60.179 60.000 12.47 0.16 0.00 3.51
44 45 1.601419 CCTCTTCTAACGCGGGGACA 61.601 60.000 12.47 0.00 0.00 4.02
45 46 1.141234 CCTCTTCTAACGCGGGGAC 59.859 63.158 12.47 0.00 0.00 4.46
46 47 1.304713 ACCTCTTCTAACGCGGGGA 60.305 57.895 12.47 1.97 0.00 4.81
47 48 1.141234 GACCTCTTCTAACGCGGGG 59.859 63.158 12.47 0.00 0.00 5.73
48 49 1.141234 GGACCTCTTCTAACGCGGG 59.859 63.158 12.47 0.80 0.00 6.13
49 50 0.245539 TTGGACCTCTTCTAACGCGG 59.754 55.000 12.47 0.00 0.00 6.46
50 51 1.067776 ACTTGGACCTCTTCTAACGCG 60.068 52.381 3.53 3.53 0.00 6.01
51 52 2.029290 TGACTTGGACCTCTTCTAACGC 60.029 50.000 0.00 0.00 0.00 4.84
52 53 3.936372 TGACTTGGACCTCTTCTAACG 57.064 47.619 0.00 0.00 0.00 3.18
53 54 5.172205 GTCATGACTTGGACCTCTTCTAAC 58.828 45.833 18.83 0.00 0.00 2.34
54 55 4.082190 CGTCATGACTTGGACCTCTTCTAA 60.082 45.833 22.95 0.00 0.00 2.10
55 56 3.444034 CGTCATGACTTGGACCTCTTCTA 59.556 47.826 22.95 0.00 0.00 2.10
56 57 2.232452 CGTCATGACTTGGACCTCTTCT 59.768 50.000 22.95 0.00 0.00 2.85
57 58 2.231478 TCGTCATGACTTGGACCTCTTC 59.769 50.000 22.95 0.00 0.00 2.87
58 59 2.248248 TCGTCATGACTTGGACCTCTT 58.752 47.619 22.95 0.00 0.00 2.85
59 60 1.924731 TCGTCATGACTTGGACCTCT 58.075 50.000 22.95 0.00 0.00 3.69
60 61 2.743636 TTCGTCATGACTTGGACCTC 57.256 50.000 22.95 0.00 0.00 3.85
61 62 2.093447 GGATTCGTCATGACTTGGACCT 60.093 50.000 22.95 4.16 0.00 3.85
62 63 2.280628 GGATTCGTCATGACTTGGACC 58.719 52.381 22.95 14.99 0.00 4.46
63 64 2.972625 TGGATTCGTCATGACTTGGAC 58.027 47.619 22.95 11.16 0.00 4.02
64 65 3.694043 TTGGATTCGTCATGACTTGGA 57.306 42.857 22.95 10.72 0.00 3.53
65 66 3.753272 ACTTTGGATTCGTCATGACTTGG 59.247 43.478 22.95 8.48 0.00 3.61
66 67 5.149273 CAACTTTGGATTCGTCATGACTTG 58.851 41.667 22.95 12.38 0.00 3.16
67 68 4.821805 ACAACTTTGGATTCGTCATGACTT 59.178 37.500 22.95 8.27 0.00 3.01
68 69 4.389374 ACAACTTTGGATTCGTCATGACT 58.611 39.130 22.95 4.97 0.00 3.41
69 70 4.666655 CGACAACTTTGGATTCGTCATGAC 60.667 45.833 16.21 16.21 0.00 3.06
70 71 3.431912 CGACAACTTTGGATTCGTCATGA 59.568 43.478 0.00 0.00 0.00 3.07
71 72 3.424829 CCGACAACTTTGGATTCGTCATG 60.425 47.826 0.00 0.00 0.00 3.07
72 73 2.742053 CCGACAACTTTGGATTCGTCAT 59.258 45.455 0.00 0.00 0.00 3.06
73 74 2.139917 CCGACAACTTTGGATTCGTCA 58.860 47.619 0.00 0.00 0.00 4.35
74 75 2.409975 TCCGACAACTTTGGATTCGTC 58.590 47.619 0.00 0.00 31.94 4.20
75 76 2.036733 TCTCCGACAACTTTGGATTCGT 59.963 45.455 0.00 0.00 37.13 3.85
76 77 2.683968 TCTCCGACAACTTTGGATTCG 58.316 47.619 0.00 0.00 37.13 3.34
77 78 4.253685 TCATCTCCGACAACTTTGGATTC 58.746 43.478 0.00 0.00 37.13 2.52
78 79 4.020218 TCTCATCTCCGACAACTTTGGATT 60.020 41.667 0.00 0.00 37.13 3.01
79 80 3.515502 TCTCATCTCCGACAACTTTGGAT 59.484 43.478 0.00 0.00 37.13 3.41
80 81 2.897326 TCTCATCTCCGACAACTTTGGA 59.103 45.455 0.00 0.00 36.21 3.53
81 82 3.319137 TCTCATCTCCGACAACTTTGG 57.681 47.619 0.00 0.00 0.00 3.28
82 83 3.868077 GGATCTCATCTCCGACAACTTTG 59.132 47.826 0.00 0.00 0.00 2.77
83 84 3.515502 TGGATCTCATCTCCGACAACTTT 59.484 43.478 0.00 0.00 35.41 2.66
84 85 3.099905 TGGATCTCATCTCCGACAACTT 58.900 45.455 0.00 0.00 35.41 2.66
85 86 2.428890 GTGGATCTCATCTCCGACAACT 59.571 50.000 0.00 0.00 35.41 3.16
86 87 2.428890 AGTGGATCTCATCTCCGACAAC 59.571 50.000 0.00 0.00 35.41 3.32
87 88 2.428530 CAGTGGATCTCATCTCCGACAA 59.571 50.000 0.00 0.00 35.41 3.18
88 89 2.027385 CAGTGGATCTCATCTCCGACA 58.973 52.381 0.00 0.00 35.41 4.35
89 90 1.269517 GCAGTGGATCTCATCTCCGAC 60.270 57.143 0.00 0.00 35.41 4.79
90 91 1.035923 GCAGTGGATCTCATCTCCGA 58.964 55.000 0.00 0.00 35.41 4.55
91 92 1.000385 GAGCAGTGGATCTCATCTCCG 60.000 57.143 0.00 0.00 35.41 4.63
92 93 1.000385 CGAGCAGTGGATCTCATCTCC 60.000 57.143 0.00 0.00 0.00 3.71
93 94 1.680735 ACGAGCAGTGGATCTCATCTC 59.319 52.381 0.00 0.00 0.00 2.75
94 95 1.680735 GACGAGCAGTGGATCTCATCT 59.319 52.381 0.00 0.00 0.00 2.90
95 96 1.406898 TGACGAGCAGTGGATCTCATC 59.593 52.381 0.00 0.00 0.00 2.92
96 97 1.478631 TGACGAGCAGTGGATCTCAT 58.521 50.000 0.00 0.00 0.00 2.90
97 98 1.203287 CTTGACGAGCAGTGGATCTCA 59.797 52.381 0.00 0.00 0.00 3.27
98 99 1.474478 TCTTGACGAGCAGTGGATCTC 59.526 52.381 0.00 0.00 0.00 2.75
99 100 1.550327 TCTTGACGAGCAGTGGATCT 58.450 50.000 0.00 0.00 0.00 2.75
100 101 2.200067 CATCTTGACGAGCAGTGGATC 58.800 52.381 0.00 0.00 0.00 3.36
101 102 1.552337 ACATCTTGACGAGCAGTGGAT 59.448 47.619 0.00 0.00 0.00 3.41
102 103 0.969149 ACATCTTGACGAGCAGTGGA 59.031 50.000 0.00 0.00 0.00 4.02
103 104 2.164422 TCTACATCTTGACGAGCAGTGG 59.836 50.000 0.00 0.00 0.00 4.00
104 105 3.494045 TCTACATCTTGACGAGCAGTG 57.506 47.619 0.00 0.00 0.00 3.66
105 106 3.119316 CCTTCTACATCTTGACGAGCAGT 60.119 47.826 0.00 0.00 0.00 4.40
106 107 3.443037 CCTTCTACATCTTGACGAGCAG 58.557 50.000 0.00 0.00 0.00 4.24
107 108 2.417379 GCCTTCTACATCTTGACGAGCA 60.417 50.000 0.00 0.00 0.00 4.26
108 109 2.197577 GCCTTCTACATCTTGACGAGC 58.802 52.381 0.00 0.00 0.00 5.03
109 110 2.796383 CGGCCTTCTACATCTTGACGAG 60.796 54.545 0.00 0.00 0.00 4.18
110 111 1.134367 CGGCCTTCTACATCTTGACGA 59.866 52.381 0.00 0.00 0.00 4.20
111 112 1.560923 CGGCCTTCTACATCTTGACG 58.439 55.000 0.00 0.00 0.00 4.35
112 113 1.480954 TCCGGCCTTCTACATCTTGAC 59.519 52.381 0.00 0.00 0.00 3.18
113 114 1.757118 CTCCGGCCTTCTACATCTTGA 59.243 52.381 0.00 0.00 0.00 3.02
114 115 1.757118 TCTCCGGCCTTCTACATCTTG 59.243 52.381 0.00 0.00 0.00 3.02
115 116 2.160721 TCTCCGGCCTTCTACATCTT 57.839 50.000 0.00 0.00 0.00 2.40
116 117 2.243810 GATCTCCGGCCTTCTACATCT 58.756 52.381 0.00 0.00 0.00 2.90
117 118 1.068194 CGATCTCCGGCCTTCTACATC 60.068 57.143 0.00 0.00 33.91 3.06
118 119 0.962489 CGATCTCCGGCCTTCTACAT 59.038 55.000 0.00 0.00 33.91 2.29
119 120 0.395311 ACGATCTCCGGCCTTCTACA 60.395 55.000 0.00 0.00 43.93 2.74
120 121 0.311477 GACGATCTCCGGCCTTCTAC 59.689 60.000 0.00 0.00 41.44 2.59
121 122 1.164662 CGACGATCTCCGGCCTTCTA 61.165 60.000 0.00 0.00 45.44 2.10
122 123 2.482333 CGACGATCTCCGGCCTTCT 61.482 63.158 0.00 0.00 45.44 2.85
123 124 2.026301 CGACGATCTCCGGCCTTC 59.974 66.667 0.00 0.00 45.44 3.46
124 125 3.528370 CCGACGATCTCCGGCCTT 61.528 66.667 0.00 0.00 45.44 4.35
129 130 2.582498 GCCAACCGACGATCTCCG 60.582 66.667 0.00 0.00 45.44 4.63
130 131 2.202892 GGCCAACCGACGATCTCC 60.203 66.667 0.00 0.00 0.00 3.71
131 132 1.227002 GAGGCCAACCGACGATCTC 60.227 63.158 5.01 0.00 42.76 2.75
132 133 1.682684 AGAGGCCAACCGACGATCT 60.683 57.895 5.01 0.00 42.76 2.75
133 134 1.519455 CAGAGGCCAACCGACGATC 60.519 63.158 5.01 0.00 42.76 3.69
134 135 2.283529 ACAGAGGCCAACCGACGAT 61.284 57.895 5.01 0.00 42.76 3.73
135 136 2.915659 ACAGAGGCCAACCGACGA 60.916 61.111 5.01 0.00 42.76 4.20
136 137 2.738521 CACAGAGGCCAACCGACG 60.739 66.667 5.01 0.00 42.76 5.12
137 138 2.167398 TAGCACAGAGGCCAACCGAC 62.167 60.000 5.01 0.00 42.76 4.79
138 139 1.264749 ATAGCACAGAGGCCAACCGA 61.265 55.000 5.01 0.00 42.76 4.69
139 140 1.091771 CATAGCACAGAGGCCAACCG 61.092 60.000 5.01 0.00 42.76 4.44
140 141 1.379642 GCATAGCACAGAGGCCAACC 61.380 60.000 5.01 0.00 0.00 3.77
141 142 0.393537 AGCATAGCACAGAGGCCAAC 60.394 55.000 5.01 0.00 0.00 3.77
142 143 0.329261 AAGCATAGCACAGAGGCCAA 59.671 50.000 5.01 0.00 0.00 4.52
143 144 0.393402 CAAGCATAGCACAGAGGCCA 60.393 55.000 5.01 0.00 0.00 5.36
144 145 1.722636 GCAAGCATAGCACAGAGGCC 61.723 60.000 0.00 0.00 0.00 5.19
145 146 0.747283 AGCAAGCATAGCACAGAGGC 60.747 55.000 0.00 0.00 0.00 4.70
146 147 2.158986 AGTAGCAAGCATAGCACAGAGG 60.159 50.000 0.00 0.00 0.00 3.69
147 148 2.864946 CAGTAGCAAGCATAGCACAGAG 59.135 50.000 0.00 0.00 0.00 3.35
148 149 2.234661 ACAGTAGCAAGCATAGCACAGA 59.765 45.455 0.00 0.00 0.00 3.41
149 150 2.350804 CACAGTAGCAAGCATAGCACAG 59.649 50.000 0.00 0.00 0.00 3.66
150 151 2.349590 CACAGTAGCAAGCATAGCACA 58.650 47.619 0.00 0.00 0.00 4.57
151 152 1.063174 GCACAGTAGCAAGCATAGCAC 59.937 52.381 0.00 0.00 0.00 4.40
152 153 1.372582 GCACAGTAGCAAGCATAGCA 58.627 50.000 0.00 0.00 0.00 3.49
153 154 0.659957 GGCACAGTAGCAAGCATAGC 59.340 55.000 0.00 0.00 35.83 2.97
154 155 1.303309 GGGCACAGTAGCAAGCATAG 58.697 55.000 0.00 0.00 35.83 2.23
155 156 0.107214 GGGGCACAGTAGCAAGCATA 60.107 55.000 0.00 0.00 35.83 3.14
156 157 1.379044 GGGGCACAGTAGCAAGCAT 60.379 57.895 0.00 0.00 35.83 3.79
157 158 2.034066 GGGGCACAGTAGCAAGCA 59.966 61.111 0.00 0.00 35.83 3.91
158 159 1.379044 ATGGGGCACAGTAGCAAGC 60.379 57.895 0.00 0.00 35.83 4.01
159 160 0.254178 AGATGGGGCACAGTAGCAAG 59.746 55.000 0.00 0.00 35.83 4.01
160 161 0.253044 GAGATGGGGCACAGTAGCAA 59.747 55.000 0.00 0.00 35.83 3.91
161 162 0.618680 AGAGATGGGGCACAGTAGCA 60.619 55.000 0.00 0.00 35.83 3.49
162 163 1.414158 TAGAGATGGGGCACAGTAGC 58.586 55.000 0.00 0.00 0.00 3.58
163 164 3.900601 AGAATAGAGATGGGGCACAGTAG 59.099 47.826 0.00 0.00 0.00 2.57
164 165 3.898123 GAGAATAGAGATGGGGCACAGTA 59.102 47.826 0.00 0.00 0.00 2.74
165 166 2.703007 GAGAATAGAGATGGGGCACAGT 59.297 50.000 0.00 0.00 0.00 3.55
166 167 2.971330 AGAGAATAGAGATGGGGCACAG 59.029 50.000 0.00 0.00 0.00 3.66
167 168 3.051940 AGAGAATAGAGATGGGGCACA 57.948 47.619 0.00 0.00 0.00 4.57
168 169 3.259625 GGTAGAGAATAGAGATGGGGCAC 59.740 52.174 0.00 0.00 0.00 5.01
169 170 3.116746 TGGTAGAGAATAGAGATGGGGCA 60.117 47.826 0.00 0.00 0.00 5.36
170 171 3.511477 TGGTAGAGAATAGAGATGGGGC 58.489 50.000 0.00 0.00 0.00 5.80
171 172 4.469227 CCATGGTAGAGAATAGAGATGGGG 59.531 50.000 2.57 0.00 0.00 4.96
172 173 4.469227 CCCATGGTAGAGAATAGAGATGGG 59.531 50.000 11.73 0.00 42.12 4.00
173 174 4.469227 CCCCATGGTAGAGAATAGAGATGG 59.531 50.000 11.73 0.00 0.00 3.51
174 175 4.081198 GCCCCATGGTAGAGAATAGAGATG 60.081 50.000 11.73 0.00 0.00 2.90
175 176 4.100373 GCCCCATGGTAGAGAATAGAGAT 58.900 47.826 11.73 0.00 0.00 2.75
176 177 3.142977 AGCCCCATGGTAGAGAATAGAGA 59.857 47.826 11.73 0.00 0.00 3.10
177 178 3.515562 AGCCCCATGGTAGAGAATAGAG 58.484 50.000 11.73 0.00 0.00 2.43
178 179 3.637821 AGCCCCATGGTAGAGAATAGA 57.362 47.619 11.73 0.00 0.00 1.98
179 180 4.141390 ACAAAGCCCCATGGTAGAGAATAG 60.141 45.833 11.73 0.00 0.00 1.73
180 181 3.785887 ACAAAGCCCCATGGTAGAGAATA 59.214 43.478 11.73 0.00 0.00 1.75
181 182 2.582636 ACAAAGCCCCATGGTAGAGAAT 59.417 45.455 11.73 0.00 0.00 2.40
182 183 1.992557 ACAAAGCCCCATGGTAGAGAA 59.007 47.619 11.73 0.00 0.00 2.87
183 184 1.559682 GACAAAGCCCCATGGTAGAGA 59.440 52.381 11.73 0.00 0.00 3.10
184 185 1.408822 GGACAAAGCCCCATGGTAGAG 60.409 57.143 11.73 0.00 0.00 2.43
185 186 0.623723 GGACAAAGCCCCATGGTAGA 59.376 55.000 11.73 0.00 0.00 2.59
186 187 0.331278 TGGACAAAGCCCCATGGTAG 59.669 55.000 11.73 2.48 0.00 3.18
187 188 0.780637 TTGGACAAAGCCCCATGGTA 59.219 50.000 11.73 0.00 31.66 3.25
188 189 0.105246 TTTGGACAAAGCCCCATGGT 60.105 50.000 11.73 0.00 31.66 3.55
189 190 1.055040 TTTTGGACAAAGCCCCATGG 58.945 50.000 4.14 4.14 31.66 3.66
190 191 2.568509 AGATTTTGGACAAAGCCCCATG 59.431 45.455 0.00 0.00 31.66 3.66
191 192 2.906568 AGATTTTGGACAAAGCCCCAT 58.093 42.857 0.00 0.00 31.66 4.00
192 193 2.397044 AGATTTTGGACAAAGCCCCA 57.603 45.000 0.00 0.00 0.00 4.96
193 194 3.431415 AGTAGATTTTGGACAAAGCCCC 58.569 45.455 0.00 0.00 0.00 5.80
194 195 5.105877 GGTAAGTAGATTTTGGACAAAGCCC 60.106 44.000 0.00 0.00 0.00 5.19
195 196 5.105877 GGGTAAGTAGATTTTGGACAAAGCC 60.106 44.000 0.00 0.00 0.00 4.35
196 197 5.391629 CGGGTAAGTAGATTTTGGACAAAGC 60.392 44.000 0.00 0.00 0.00 3.51
197 198 5.123344 CCGGGTAAGTAGATTTTGGACAAAG 59.877 44.000 0.00 0.00 0.00 2.77
198 199 5.005094 CCGGGTAAGTAGATTTTGGACAAA 58.995 41.667 0.00 0.00 0.00 2.83
199 200 4.286549 TCCGGGTAAGTAGATTTTGGACAA 59.713 41.667 0.00 0.00 0.00 3.18
200 201 3.839490 TCCGGGTAAGTAGATTTTGGACA 59.161 43.478 0.00 0.00 0.00 4.02
201 202 4.476628 TCCGGGTAAGTAGATTTTGGAC 57.523 45.455 0.00 0.00 0.00 4.02
202 203 5.703730 AATCCGGGTAAGTAGATTTTGGA 57.296 39.130 0.00 0.00 0.00 3.53
203 204 6.823497 TCTAATCCGGGTAAGTAGATTTTGG 58.177 40.000 0.00 0.00 31.63 3.28
204 205 8.904099 ATTCTAATCCGGGTAAGTAGATTTTG 57.096 34.615 0.00 0.00 31.63 2.44
205 206 9.916360 AAATTCTAATCCGGGTAAGTAGATTTT 57.084 29.630 0.00 7.29 31.63 1.82
206 207 9.557061 GAAATTCTAATCCGGGTAAGTAGATTT 57.443 33.333 0.00 1.26 31.63 2.17
207 208 8.711170 TGAAATTCTAATCCGGGTAAGTAGATT 58.289 33.333 0.00 0.00 33.66 2.40
208 209 8.258850 TGAAATTCTAATCCGGGTAAGTAGAT 57.741 34.615 0.00 0.00 0.00 1.98
209 210 7.201974 CCTGAAATTCTAATCCGGGTAAGTAGA 60.202 40.741 0.00 0.00 0.00 2.59
210 211 6.929606 CCTGAAATTCTAATCCGGGTAAGTAG 59.070 42.308 0.00 0.00 0.00 2.57
211 212 6.687139 GCCTGAAATTCTAATCCGGGTAAGTA 60.687 42.308 0.00 0.00 0.00 2.24
212 213 5.681639 CCTGAAATTCTAATCCGGGTAAGT 58.318 41.667 0.00 0.00 0.00 2.24
213 214 4.515567 GCCTGAAATTCTAATCCGGGTAAG 59.484 45.833 0.00 0.00 0.00 2.34
214 215 4.165372 AGCCTGAAATTCTAATCCGGGTAA 59.835 41.667 0.00 0.00 30.31 2.85
215 216 3.714798 AGCCTGAAATTCTAATCCGGGTA 59.285 43.478 0.00 0.00 30.31 3.69
216 217 2.509964 AGCCTGAAATTCTAATCCGGGT 59.490 45.455 0.00 0.00 0.00 5.28
217 218 2.880890 CAGCCTGAAATTCTAATCCGGG 59.119 50.000 0.00 0.00 0.00 5.73
218 219 3.808728 TCAGCCTGAAATTCTAATCCGG 58.191 45.455 0.00 0.00 0.00 5.14
219 220 5.059161 TCATCAGCCTGAAATTCTAATCCG 58.941 41.667 0.00 0.00 0.00 4.18
220 221 6.319658 TGTTCATCAGCCTGAAATTCTAATCC 59.680 38.462 0.00 0.00 36.92 3.01
221 222 7.192232 GTGTTCATCAGCCTGAAATTCTAATC 58.808 38.462 0.00 0.00 36.92 1.75
222 223 6.096001 GGTGTTCATCAGCCTGAAATTCTAAT 59.904 38.462 0.00 0.00 36.92 1.73
223 224 5.415701 GGTGTTCATCAGCCTGAAATTCTAA 59.584 40.000 0.00 0.00 36.92 2.10
224 225 4.943705 GGTGTTCATCAGCCTGAAATTCTA 59.056 41.667 0.00 0.00 36.92 2.10
225 226 3.760684 GGTGTTCATCAGCCTGAAATTCT 59.239 43.478 0.00 0.00 36.92 2.40
226 227 3.507233 TGGTGTTCATCAGCCTGAAATTC 59.493 43.478 0.00 0.00 43.10 2.17
227 228 3.499338 TGGTGTTCATCAGCCTGAAATT 58.501 40.909 0.00 0.00 43.10 1.82
228 229 3.159213 TGGTGTTCATCAGCCTGAAAT 57.841 42.857 0.00 0.00 43.10 2.17
229 230 2.655090 TGGTGTTCATCAGCCTGAAA 57.345 45.000 0.00 0.00 43.10 2.69
230 231 2.655090 TTGGTGTTCATCAGCCTGAA 57.345 45.000 0.00 0.00 43.10 3.02
231 232 2.655090 TTTGGTGTTCATCAGCCTGA 57.345 45.000 0.00 0.00 43.10 3.86
232 233 2.559668 ACATTTGGTGTTCATCAGCCTG 59.440 45.455 0.00 0.00 43.10 4.85
233 234 2.559668 CACATTTGGTGTTCATCAGCCT 59.440 45.455 0.00 0.00 42.75 4.58
234 235 2.950433 CACATTTGGTGTTCATCAGCC 58.050 47.619 0.00 0.00 42.75 4.85
279 280 9.174166 GTTCTTCCCATATAAAGTTGTGTGTAT 57.826 33.333 0.00 0.00 0.00 2.29
280 281 7.608761 GGTTCTTCCCATATAAAGTTGTGTGTA 59.391 37.037 0.00 0.00 0.00 2.90
281 282 6.433093 GGTTCTTCCCATATAAAGTTGTGTGT 59.567 38.462 0.00 0.00 0.00 3.72
282 283 6.432783 TGGTTCTTCCCATATAAAGTTGTGTG 59.567 38.462 0.00 0.00 34.77 3.82
283 284 6.548321 TGGTTCTTCCCATATAAAGTTGTGT 58.452 36.000 0.00 0.00 34.77 3.72
284 285 7.461182 TTGGTTCTTCCCATATAAAGTTGTG 57.539 36.000 0.00 0.00 33.60 3.33
285 286 8.531146 CATTTGGTTCTTCCCATATAAAGTTGT 58.469 33.333 0.00 0.00 33.60 3.32
286 287 8.531146 ACATTTGGTTCTTCCCATATAAAGTTG 58.469 33.333 0.00 0.00 33.60 3.16
287 288 8.531146 CACATTTGGTTCTTCCCATATAAAGTT 58.469 33.333 0.00 0.00 33.60 2.66
288 289 7.124147 CCACATTTGGTTCTTCCCATATAAAGT 59.876 37.037 0.00 0.00 38.23 2.66
289 290 7.491682 CCACATTTGGTTCTTCCCATATAAAG 58.508 38.462 0.00 0.00 38.23 1.85
290 291 6.127196 GCCACATTTGGTTCTTCCCATATAAA 60.127 38.462 0.00 0.00 45.98 1.40
291 292 5.362430 GCCACATTTGGTTCTTCCCATATAA 59.638 40.000 0.00 0.00 45.98 0.98
292 293 4.892934 GCCACATTTGGTTCTTCCCATATA 59.107 41.667 0.00 0.00 45.98 0.86
293 294 3.706086 GCCACATTTGGTTCTTCCCATAT 59.294 43.478 0.00 0.00 45.98 1.78
294 295 3.096092 GCCACATTTGGTTCTTCCCATA 58.904 45.455 0.00 0.00 45.98 2.74
295 296 1.901833 GCCACATTTGGTTCTTCCCAT 59.098 47.619 0.00 0.00 45.98 4.00
296 297 1.337118 GCCACATTTGGTTCTTCCCA 58.663 50.000 0.00 0.00 45.98 4.37
297 298 1.000843 GTGCCACATTTGGTTCTTCCC 59.999 52.381 0.00 0.00 45.98 3.97
298 299 1.000843 GGTGCCACATTTGGTTCTTCC 59.999 52.381 0.00 0.00 45.98 3.46
299 300 1.000843 GGGTGCCACATTTGGTTCTTC 59.999 52.381 0.00 0.00 45.98 2.87
300 301 1.047801 GGGTGCCACATTTGGTTCTT 58.952 50.000 0.00 0.00 45.98 2.52
301 302 0.831711 GGGGTGCCACATTTGGTTCT 60.832 55.000 0.00 0.00 45.98 3.01
302 303 1.118356 TGGGGTGCCACATTTGGTTC 61.118 55.000 0.00 0.00 45.98 3.62
303 304 1.074926 TGGGGTGCCACATTTGGTT 60.075 52.632 0.00 0.00 45.98 3.67
304 305 1.836604 GTGGGGTGCCACATTTGGT 60.837 57.895 0.00 0.00 45.98 3.67
306 307 0.887933 GTAGTGGGGTGCCACATTTG 59.112 55.000 0.00 0.00 42.56 2.32
307 308 0.251608 GGTAGTGGGGTGCCACATTT 60.252 55.000 0.00 0.00 42.56 2.32
308 309 1.382629 GGTAGTGGGGTGCCACATT 59.617 57.895 0.00 0.00 42.56 2.71
309 310 2.612493 GGGTAGTGGGGTGCCACAT 61.612 63.158 0.00 0.00 42.56 3.21
310 311 3.253838 GGGTAGTGGGGTGCCACA 61.254 66.667 0.00 0.00 42.56 4.17
311 312 2.360439 TTTGGGTAGTGGGGTGCCAC 62.360 60.000 0.00 0.00 40.64 5.01
312 313 2.075355 CTTTGGGTAGTGGGGTGCCA 62.075 60.000 0.00 0.00 0.00 4.92
313 314 1.304134 CTTTGGGTAGTGGGGTGCC 60.304 63.158 0.00 0.00 0.00 5.01
314 315 1.977009 GCTTTGGGTAGTGGGGTGC 60.977 63.158 0.00 0.00 0.00 5.01
315 316 0.609131 CAGCTTTGGGTAGTGGGGTG 60.609 60.000 0.00 0.00 0.00 4.61
316 317 1.767692 CAGCTTTGGGTAGTGGGGT 59.232 57.895 0.00 0.00 0.00 4.95
317 318 1.000896 CCAGCTTTGGGTAGTGGGG 60.001 63.158 0.00 0.00 0.00 4.96
318 319 1.678970 GCCAGCTTTGGGTAGTGGG 60.679 63.158 0.00 0.00 0.00 4.61
319 320 1.678970 GGCCAGCTTTGGGTAGTGG 60.679 63.158 0.00 0.00 0.00 4.00
320 321 0.539438 TTGGCCAGCTTTGGGTAGTG 60.539 55.000 5.11 0.00 0.00 2.74
321 322 0.187361 TTTGGCCAGCTTTGGGTAGT 59.813 50.000 5.11 0.00 0.00 2.73
322 323 1.205417 CATTTGGCCAGCTTTGGGTAG 59.795 52.381 5.11 0.00 0.00 3.18
323 324 1.265236 CATTTGGCCAGCTTTGGGTA 58.735 50.000 5.11 0.00 0.00 3.69
324 325 1.482748 CCATTTGGCCAGCTTTGGGT 61.483 55.000 5.11 0.00 0.00 4.51
325 326 1.297364 CCATTTGGCCAGCTTTGGG 59.703 57.895 5.11 0.00 0.00 4.12
326 327 1.297364 CCCATTTGGCCAGCTTTGG 59.703 57.895 5.11 11.65 0.00 3.28
355 356 4.758251 TGCTCACGGGTCGGCATG 62.758 66.667 0.00 0.00 0.00 4.06
356 357 3.958147 CTTGCTCACGGGTCGGCAT 62.958 63.158 3.98 0.00 34.59 4.40
357 358 4.680237 CTTGCTCACGGGTCGGCA 62.680 66.667 0.00 0.00 0.00 5.69
358 359 4.681978 ACTTGCTCACGGGTCGGC 62.682 66.667 0.00 0.00 0.00 5.54
359 360 2.030562 AACTTGCTCACGGGTCGG 59.969 61.111 0.00 0.00 0.00 4.79
360 361 2.317609 CCAACTTGCTCACGGGTCG 61.318 63.158 0.00 0.00 0.00 4.79
361 362 2.617274 GCCAACTTGCTCACGGGTC 61.617 63.158 0.00 0.00 0.00 4.46
362 363 2.594592 GCCAACTTGCTCACGGGT 60.595 61.111 0.00 0.00 0.00 5.28
363 364 2.594303 TGCCAACTTGCTCACGGG 60.594 61.111 0.00 0.00 0.00 5.28
364 365 2.639286 GTGCCAACTTGCTCACGG 59.361 61.111 0.00 0.00 0.00 4.94
365 366 2.249309 CGTGCCAACTTGCTCACG 59.751 61.111 15.54 15.54 44.62 4.35
366 367 1.279840 GTCGTGCCAACTTGCTCAC 59.720 57.895 0.00 3.57 0.00 3.51
367 368 2.243957 CGTCGTGCCAACTTGCTCA 61.244 57.895 0.00 0.00 0.00 4.26
368 369 2.551270 CGTCGTGCCAACTTGCTC 59.449 61.111 0.00 0.00 0.00 4.26
369 370 3.649986 GCGTCGTGCCAACTTGCT 61.650 61.111 0.00 0.00 37.76 3.91
379 380 3.972803 GATTAGCCGCGCGTCGTG 61.973 66.667 29.95 14.56 37.10 4.35
390 391 3.272334 CTGCACGGCCCGATTAGC 61.272 66.667 11.71 8.96 0.00 3.09
391 392 2.023414 TACCTGCACGGCCCGATTAG 62.023 60.000 11.71 4.11 35.61 1.73
392 393 2.059190 TACCTGCACGGCCCGATTA 61.059 57.895 11.71 0.00 35.61 1.75
393 394 3.395702 TACCTGCACGGCCCGATT 61.396 61.111 11.71 0.00 35.61 3.34
394 395 4.157120 GTACCTGCACGGCCCGAT 62.157 66.667 11.71 0.00 35.61 4.18
400 401 4.673298 TGCCACGTACCTGCACGG 62.673 66.667 0.00 0.29 46.12 4.94
401 402 3.411351 GTGCCACGTACCTGCACG 61.411 66.667 13.49 0.00 44.95 5.34
403 404 1.375396 GATGTGCCACGTACCTGCA 60.375 57.895 0.00 0.00 0.00 4.41
404 405 2.106683 GGATGTGCCACGTACCTGC 61.107 63.158 0.00 0.00 36.34 4.85
405 406 0.740868 CAGGATGTGCCACGTACCTG 60.741 60.000 16.14 16.14 40.02 4.00
406 407 1.596934 CAGGATGTGCCACGTACCT 59.403 57.895 0.00 0.00 40.02 3.08
407 408 1.449601 CCAGGATGTGCCACGTACC 60.450 63.158 0.00 0.00 40.02 3.34
408 409 1.449601 CCCAGGATGTGCCACGTAC 60.450 63.158 0.00 0.00 40.02 3.67
409 410 2.665089 CCCCAGGATGTGCCACGTA 61.665 63.158 0.00 0.00 40.02 3.57
410 411 4.033776 CCCCAGGATGTGCCACGT 62.034 66.667 0.00 0.00 40.02 4.49
416 417 3.925630 AAGCACGCCCCAGGATGTG 62.926 63.158 0.00 4.47 34.97 3.21
417 418 3.650950 AAGCACGCCCCAGGATGT 61.651 61.111 0.00 0.00 0.00 3.06
418 419 3.136123 CAAGCACGCCCCAGGATG 61.136 66.667 0.00 0.00 0.00 3.51
419 420 3.329889 TCAAGCACGCCCCAGGAT 61.330 61.111 0.00 0.00 0.00 3.24
420 421 4.020617 CTCAAGCACGCCCCAGGA 62.021 66.667 0.00 0.00 0.00 3.86
422 423 4.711949 AGCTCAAGCACGCCCCAG 62.712 66.667 4.59 0.00 45.16 4.45
425 426 3.958147 TAGCAGCTCAAGCACGCCC 62.958 63.158 0.00 0.00 45.16 6.13
426 427 2.434884 TAGCAGCTCAAGCACGCC 60.435 61.111 0.00 0.00 45.16 5.68
427 428 2.459442 CCTAGCAGCTCAAGCACGC 61.459 63.158 0.00 6.55 45.16 5.34
428 429 2.459442 GCCTAGCAGCTCAAGCACG 61.459 63.158 0.00 0.00 45.16 5.34
429 430 1.078567 AGCCTAGCAGCTCAAGCAC 60.079 57.895 0.00 0.00 39.48 4.40
430 431 1.078637 CAGCCTAGCAGCTCAAGCA 60.079 57.895 0.00 0.00 42.61 3.91
431 432 0.810823 CTCAGCCTAGCAGCTCAAGC 60.811 60.000 0.00 0.00 42.61 4.01
432 433 0.810823 GCTCAGCCTAGCAGCTCAAG 60.811 60.000 0.00 0.00 42.61 3.02
433 434 1.220206 GCTCAGCCTAGCAGCTCAA 59.780 57.895 0.00 0.00 42.61 3.02
434 435 2.898738 GCTCAGCCTAGCAGCTCA 59.101 61.111 0.00 0.00 42.61 4.26
440 441 1.066587 CCTACGTGCTCAGCCTAGC 59.933 63.158 0.00 0.97 43.08 3.42
441 442 1.066587 GCCTACGTGCTCAGCCTAG 59.933 63.158 0.00 0.00 0.00 3.02
442 443 1.379977 AGCCTACGTGCTCAGCCTA 60.380 57.895 0.00 0.00 36.75 3.93
443 444 2.681778 AGCCTACGTGCTCAGCCT 60.682 61.111 0.00 0.00 36.75 4.58
444 445 2.510238 CAGCCTACGTGCTCAGCC 60.510 66.667 0.00 0.00 40.32 4.85
445 446 2.510238 CCAGCCTACGTGCTCAGC 60.510 66.667 0.00 0.00 40.32 4.26
446 447 2.510238 GCCAGCCTACGTGCTCAG 60.510 66.667 0.00 0.00 40.32 3.35
447 448 3.310307 TGCCAGCCTACGTGCTCA 61.310 61.111 0.00 0.00 40.32 4.26
448 449 2.815647 GTGCCAGCCTACGTGCTC 60.816 66.667 0.00 0.00 40.32 4.26
449 450 4.742201 CGTGCCAGCCTACGTGCT 62.742 66.667 0.00 0.00 44.00 4.40
463 464 1.689352 GATAAACGGGTCGTGCCGTG 61.689 60.000 0.00 0.00 39.99 4.94
464 465 1.446618 GATAAACGGGTCGTGCCGT 60.447 57.895 0.00 0.00 39.99 5.68
465 466 0.738412 AAGATAAACGGGTCGTGCCG 60.738 55.000 0.00 0.00 39.99 5.69
466 467 1.445871 AAAGATAAACGGGTCGTGCC 58.554 50.000 0.00 0.00 39.99 5.01
467 468 3.058777 TGAAAAAGATAAACGGGTCGTGC 60.059 43.478 0.00 0.00 39.99 5.34
468 469 4.735662 TGAAAAAGATAAACGGGTCGTG 57.264 40.909 0.00 0.00 39.99 4.35
469 470 5.952526 AATGAAAAAGATAAACGGGTCGT 57.047 34.783 0.00 0.00 43.97 4.34
470 471 8.905103 AAATAATGAAAAAGATAAACGGGTCG 57.095 30.769 0.00 0.00 0.00 4.79
521 522 2.290323 CCTACTGGGCTGGTATTATGCC 60.290 54.545 0.00 0.00 45.42 4.40
522 523 2.372172 ACCTACTGGGCTGGTATTATGC 59.628 50.000 0.00 0.00 39.10 3.14
523 524 5.818678 TTACCTACTGGGCTGGTATTATG 57.181 43.478 0.00 0.00 36.38 1.90
524 525 6.835029 TTTTACCTACTGGGCTGGTATTAT 57.165 37.500 0.00 0.00 36.38 1.28
525 526 6.639590 TTTTTACCTACTGGGCTGGTATTA 57.360 37.500 0.00 0.00 36.38 0.98
526 527 5.523883 TTTTTACCTACTGGGCTGGTATT 57.476 39.130 0.00 0.00 36.38 1.89
527 528 5.727243 ATTTTTACCTACTGGGCTGGTAT 57.273 39.130 0.00 0.00 36.38 2.73
528 529 5.131475 CCTATTTTTACCTACTGGGCTGGTA 59.869 44.000 0.00 0.00 39.10 3.25
529 530 4.079958 CCTATTTTTACCTACTGGGCTGGT 60.080 45.833 0.00 0.00 39.10 4.00
530 531 4.461198 CCTATTTTTACCTACTGGGCTGG 58.539 47.826 0.00 0.00 39.10 4.85
531 532 3.883489 GCCTATTTTTACCTACTGGGCTG 59.117 47.826 0.00 0.00 39.10 4.85
532 533 3.117625 GGCCTATTTTTACCTACTGGGCT 60.118 47.826 0.00 0.00 39.10 5.19
533 534 3.220110 GGCCTATTTTTACCTACTGGGC 58.780 50.000 0.00 0.00 39.10 5.36
534 535 4.461198 CTGGCCTATTTTTACCTACTGGG 58.539 47.826 3.32 0.00 41.89 4.45
535 536 3.883489 GCTGGCCTATTTTTACCTACTGG 59.117 47.826 3.32 0.00 39.83 4.00
536 537 4.523083 TGCTGGCCTATTTTTACCTACTG 58.477 43.478 3.32 0.00 0.00 2.74
537 538 4.855298 TGCTGGCCTATTTTTACCTACT 57.145 40.909 3.32 0.00 0.00 2.57
538 539 4.202020 GCTTGCTGGCCTATTTTTACCTAC 60.202 45.833 3.32 0.00 0.00 3.18
539 540 3.951680 GCTTGCTGGCCTATTTTTACCTA 59.048 43.478 3.32 0.00 0.00 3.08
540 541 2.760650 GCTTGCTGGCCTATTTTTACCT 59.239 45.455 3.32 0.00 0.00 3.08
541 542 3.165058 GCTTGCTGGCCTATTTTTACC 57.835 47.619 3.32 0.00 0.00 2.85
552 553 0.242017 CTACTGTTTGGCTTGCTGGC 59.758 55.000 0.00 0.00 42.18 4.85
553 554 0.883833 CCTACTGTTTGGCTTGCTGG 59.116 55.000 0.00 0.00 0.00 4.85
554 555 1.267806 CACCTACTGTTTGGCTTGCTG 59.732 52.381 0.00 0.00 0.00 4.41
555 556 1.609208 CACCTACTGTTTGGCTTGCT 58.391 50.000 0.00 0.00 0.00 3.91
556 557 0.598065 CCACCTACTGTTTGGCTTGC 59.402 55.000 0.00 0.00 0.00 4.01
557 558 1.247567 CCCACCTACTGTTTGGCTTG 58.752 55.000 0.00 0.00 0.00 4.01
558 559 0.539669 GCCCACCTACTGTTTGGCTT 60.540 55.000 0.00 0.00 38.64 4.35
559 560 1.074951 GCCCACCTACTGTTTGGCT 59.925 57.895 0.00 0.00 38.64 4.75
560 561 1.977009 GGCCCACCTACTGTTTGGC 60.977 63.158 0.00 0.00 40.21 4.52
561 562 4.415783 GGCCCACCTACTGTTTGG 57.584 61.111 0.00 0.00 0.00 3.28
571 572 2.264794 CAGTCACGTAGGCCCACC 59.735 66.667 0.00 0.00 0.00 4.61
572 573 2.264794 CCAGTCACGTAGGCCCAC 59.735 66.667 0.00 0.00 0.00 4.61
573 574 3.702048 GCCAGTCACGTAGGCCCA 61.702 66.667 0.00 0.00 42.58 5.36
574 575 4.814294 CGCCAGTCACGTAGGCCC 62.814 72.222 0.00 0.00 45.56 5.80
575 576 4.814294 CCGCCAGTCACGTAGGCC 62.814 72.222 12.90 0.00 45.56 5.19
576 577 4.814294 CCCGCCAGTCACGTAGGC 62.814 72.222 9.64 9.64 44.89 3.93
577 578 4.814294 GCCCGCCAGTCACGTAGG 62.814 72.222 0.00 0.00 0.00 3.18
578 579 4.814294 GGCCCGCCAGTCACGTAG 62.814 72.222 0.00 0.00 35.81 3.51
603 604 3.880846 GAGCTGCAAATCGGGCCG 61.881 66.667 22.51 22.51 0.00 6.13
604 605 3.880846 CGAGCTGCAAATCGGGCC 61.881 66.667 11.40 0.00 35.33 5.80
608 609 2.099062 GTGCCGAGCTGCAAATCG 59.901 61.111 12.11 12.11 44.11 3.34
609 610 2.099062 CGTGCCGAGCTGCAAATC 59.901 61.111 1.02 0.00 44.11 2.17
610 611 3.434319 CCGTGCCGAGCTGCAAAT 61.434 61.111 1.02 0.00 44.11 2.32
621 622 1.144496 TTATTAGACCGGCCGTGCC 59.856 57.895 26.12 12.49 46.75 5.01
622 623 1.156034 GGTTATTAGACCGGCCGTGC 61.156 60.000 26.12 15.59 0.00 5.34
623 624 2.981997 GGTTATTAGACCGGCCGTG 58.018 57.895 26.12 18.04 0.00 4.94
630 631 1.296727 GCCAGCACGGTTATTAGACC 58.703 55.000 0.00 0.00 36.97 3.85
631 632 1.296727 GGCCAGCACGGTTATTAGAC 58.703 55.000 0.00 0.00 36.97 2.59
632 633 0.179468 GGGCCAGCACGGTTATTAGA 59.821 55.000 4.39 0.00 36.97 2.10
633 634 0.818040 GGGGCCAGCACGGTTATTAG 60.818 60.000 4.39 0.00 36.97 1.73
634 635 1.225148 GGGGCCAGCACGGTTATTA 59.775 57.895 4.39 0.00 36.97 0.98
635 636 2.044352 GGGGCCAGCACGGTTATT 60.044 61.111 4.39 0.00 36.97 1.40
636 637 2.624674 GATGGGGCCAGCACGGTTAT 62.625 60.000 4.39 0.00 36.97 1.89
637 638 3.334891 ATGGGGCCAGCACGGTTA 61.335 61.111 4.39 0.00 36.97 2.85
638 639 4.740822 GATGGGGCCAGCACGGTT 62.741 66.667 4.39 0.00 36.97 4.44
643 644 4.365111 GTGGTGATGGGGCCAGCA 62.365 66.667 4.39 0.00 40.23 4.41
645 646 3.341629 AGGTGGTGATGGGGCCAG 61.342 66.667 4.39 0.00 35.14 4.85
646 647 3.338250 GAGGTGGTGATGGGGCCA 61.338 66.667 4.39 0.00 0.00 5.36
647 648 2.228841 AATGAGGTGGTGATGGGGCC 62.229 60.000 0.00 0.00 0.00 5.80
648 649 0.753111 GAATGAGGTGGTGATGGGGC 60.753 60.000 0.00 0.00 0.00 5.80
649 650 0.106519 GGAATGAGGTGGTGATGGGG 60.107 60.000 0.00 0.00 0.00 4.96
650 651 0.106519 GGGAATGAGGTGGTGATGGG 60.107 60.000 0.00 0.00 0.00 4.00
651 652 0.106519 GGGGAATGAGGTGGTGATGG 60.107 60.000 0.00 0.00 0.00 3.51
652 653 0.625316 TGGGGAATGAGGTGGTGATG 59.375 55.000 0.00 0.00 0.00 3.07
653 654 1.612035 ATGGGGAATGAGGTGGTGAT 58.388 50.000 0.00 0.00 0.00 3.06
654 655 1.381867 AATGGGGAATGAGGTGGTGA 58.618 50.000 0.00 0.00 0.00 4.02
655 656 2.242196 ACTAATGGGGAATGAGGTGGTG 59.758 50.000 0.00 0.00 0.00 4.17
656 657 2.509964 GACTAATGGGGAATGAGGTGGT 59.490 50.000 0.00 0.00 0.00 4.16
657 658 2.780010 AGACTAATGGGGAATGAGGTGG 59.220 50.000 0.00 0.00 0.00 4.61
658 659 4.202441 CAAGACTAATGGGGAATGAGGTG 58.798 47.826 0.00 0.00 0.00 4.00
659 660 3.852578 ACAAGACTAATGGGGAATGAGGT 59.147 43.478 0.00 0.00 0.00 3.85
660 661 4.164988 AGACAAGACTAATGGGGAATGAGG 59.835 45.833 0.00 0.00 0.00 3.86
661 662 5.104776 TGAGACAAGACTAATGGGGAATGAG 60.105 44.000 0.00 0.00 0.00 2.90
662 663 4.782691 TGAGACAAGACTAATGGGGAATGA 59.217 41.667 0.00 0.00 0.00 2.57
663 664 5.102953 TGAGACAAGACTAATGGGGAATG 57.897 43.478 0.00 0.00 0.00 2.67
664 665 5.779241 TTGAGACAAGACTAATGGGGAAT 57.221 39.130 0.00 0.00 0.00 3.01
665 666 5.576563 TTTGAGACAAGACTAATGGGGAA 57.423 39.130 0.00 0.00 0.00 3.97
666 667 5.576563 TTTTGAGACAAGACTAATGGGGA 57.423 39.130 0.00 0.00 0.00 4.81
872 873 1.229529 ATTGGGGACTCGGAGTGGT 60.230 57.895 16.72 0.00 0.00 4.16
953 971 3.612251 GGTTCTCCGACGGGATGA 58.388 61.111 15.25 7.52 42.83 2.92
1099 1123 3.282157 GATGATGCCGCGCCATGT 61.282 61.111 7.55 0.00 0.00 3.21
1490 5941 7.496529 AATTCGAACAGATGAAACTCTTGAA 57.503 32.000 0.00 0.00 0.00 2.69
1516 5967 2.391678 GGATTGGGATTGTTCCAGCAT 58.608 47.619 0.00 0.00 44.60 3.79
1779 6727 6.425114 AGTCAATATAAAATAGCTGTCCTGCG 59.575 38.462 0.00 0.00 38.13 5.18
1827 6778 7.549134 ACTGATATAGTCGAAAATGAGTTTGCA 59.451 33.333 0.00 0.00 33.17 4.08
1828 6779 7.910304 ACTGATATAGTCGAAAATGAGTTTGC 58.090 34.615 0.00 0.00 33.17 3.68
1872 6823 3.246301 AGTCCCATCCCACTGATAGATG 58.754 50.000 0.00 0.00 37.69 2.90
2092 11006 0.961857 TGGTAGTTAGGCTCGACGCA 60.962 55.000 0.00 0.00 41.67 5.24
2093 11007 0.248539 CTGGTAGTTAGGCTCGACGC 60.249 60.000 0.00 0.00 38.13 5.19
2097 11011 3.870633 AACTTCTGGTAGTTAGGCTCG 57.129 47.619 0.00 0.00 36.62 5.03
2221 11138 4.100084 CCTCACCGATGCCTGCCA 62.100 66.667 0.00 0.00 0.00 4.92
2227 11144 1.812922 CAGAGCACCTCACCGATGC 60.813 63.158 0.00 0.00 39.74 3.91
2358 11641 1.901591 AACATGCAACCAGAGACAGG 58.098 50.000 0.00 0.00 0.00 4.00
2547 12039 9.090103 CCTAGATAGAACCAACCAATGTAGATA 57.910 37.037 0.00 0.00 0.00 1.98
2552 12044 5.250774 ACACCTAGATAGAACCAACCAATGT 59.749 40.000 0.00 0.00 0.00 2.71
2560 12052 4.575885 GTGCAAACACCTAGATAGAACCA 58.424 43.478 0.00 0.00 41.21 3.67
2845 12344 8.885722 CATATCACATTATATGCTGCACATGTA 58.114 33.333 3.57 0.00 40.06 2.29
2862 12361 6.430308 CAGCCTTTTGAGATAGCATATCACAT 59.570 38.462 0.04 0.00 28.91 3.21
2863 12362 5.761726 CAGCCTTTTGAGATAGCATATCACA 59.238 40.000 0.04 0.00 28.91 3.58
2864 12363 5.994054 TCAGCCTTTTGAGATAGCATATCAC 59.006 40.000 0.04 0.00 28.91 3.06
2865 12364 6.042437 TCTCAGCCTTTTGAGATAGCATATCA 59.958 38.462 1.79 0.00 46.42 2.15
2866 12365 6.462500 TCTCAGCCTTTTGAGATAGCATATC 58.538 40.000 1.79 0.00 46.42 1.63
2867 12366 6.430962 TCTCAGCCTTTTGAGATAGCATAT 57.569 37.500 1.79 0.00 46.42 1.78
2868 12367 5.876651 TCTCAGCCTTTTGAGATAGCATA 57.123 39.130 1.79 0.00 46.42 3.14
2891 12390 8.845942 ATTACGAATCATCAACATTCACATTG 57.154 30.769 0.00 0.00 31.53 2.82
2897 12396 7.386299 AGCTAGGATTACGAATCATCAACATTC 59.614 37.037 0.00 0.00 39.71 2.67
2941 12441 7.775093 TGTTCAAGTCCCATTAGAAGATTATGG 59.225 37.037 0.00 0.00 38.82 2.74
2990 12490 5.155278 TCGTAATTTGGAGCCACTAGAAA 57.845 39.130 0.00 0.00 0.00 2.52
2996 12496 5.054390 TCAATTTCGTAATTTGGAGCCAC 57.946 39.130 0.00 0.00 31.63 5.01
3030 12760 5.600484 AGGTTCGAAGACAGATGAATATCCT 59.400 40.000 0.00 0.00 34.32 3.24
3035 12765 4.808414 TCAGGTTCGAAGACAGATGAAT 57.192 40.909 0.00 0.00 34.32 2.57
3039 12769 3.055530 AGCAATCAGGTTCGAAGACAGAT 60.056 43.478 0.00 0.00 34.32 2.90
3043 12773 4.489679 AAAAGCAATCAGGTTCGAAGAC 57.510 40.909 0.00 0.00 36.83 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.