Multiple sequence alignment - TraesCS7A01G487000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G487000 chr7A 100.000 3185 0 0 1 3185 677724723 677721539 0.000000e+00 5882.0
1 TraesCS7A01G487000 chr7A 88.838 2168 172 38 873 2988 677821256 677823405 0.000000e+00 2599.0
2 TraesCS7A01G487000 chr7A 76.829 1627 275 58 911 2486 678146284 678144709 0.000000e+00 822.0
3 TraesCS7A01G487000 chr7A 79.019 1244 210 41 875 2095 677838873 677840088 0.000000e+00 804.0
4 TraesCS7A01G487000 chr7A 77.601 1134 195 35 1002 2117 677995478 677994386 1.610000e-177 632.0
5 TraesCS7A01G487000 chr7D 90.859 2188 135 31 906 3053 586509023 586506861 0.000000e+00 2872.0
6 TraesCS7A01G487000 chr7D 87.471 1716 124 29 963 2634 586688696 586690364 0.000000e+00 1893.0
7 TraesCS7A01G487000 chr7D 78.659 2132 297 87 1002 3050 586700213 586702269 0.000000e+00 1271.0
8 TraesCS7A01G487000 chr7D 85.865 757 74 15 1988 2724 586500928 586500185 0.000000e+00 774.0
9 TraesCS7A01G487000 chr7D 88.912 487 32 11 427 896 586509739 586509258 5.920000e-162 580.0
10 TraesCS7A01G487000 chr7D 75.464 1239 213 50 966 2165 586745744 586746930 1.310000e-143 520.0
11 TraesCS7A01G487000 chr7D 95.517 290 12 1 1 290 107322613 107322325 2.240000e-126 462.0
12 TraesCS7A01G487000 chr7D 88.158 76 5 4 683 756 634809617 634809544 1.570000e-13 87.9
13 TraesCS7A01G487000 chr7B 93.570 1633 90 9 672 2293 656552483 656550855 0.000000e+00 2420.0
14 TraesCS7A01G487000 chr7B 88.630 1671 137 17 963 2593 656928762 656930419 0.000000e+00 1984.0
15 TraesCS7A01G487000 chr7B 78.809 2251 331 79 860 3050 657084507 657086671 0.000000e+00 1380.0
16 TraesCS7A01G487000 chr7B 93.570 902 50 6 2112 3005 657077063 657077964 0.000000e+00 1338.0
17 TraesCS7A01G487000 chr7B 76.900 1987 284 88 873 2796 656529703 656527829 0.000000e+00 965.0
18 TraesCS7A01G487000 chr7B 96.497 571 18 1 2437 3005 656550857 656550287 0.000000e+00 942.0
19 TraesCS7A01G487000 chr7B 77.131 1631 248 71 911 2486 657663356 657661796 0.000000e+00 830.0
20 TraesCS7A01G487000 chr7B 89.243 502 35 10 427 920 657076564 657077054 7.550000e-171 610.0
21 TraesCS7A01G487000 chr7B 76.599 1188 212 41 1002 2165 657420548 657421693 7.610000e-166 593.0
22 TraesCS7A01G487000 chr7B 81.692 650 100 16 873 1513 657338720 657339359 1.010000e-144 523.0
23 TraesCS7A01G487000 chr7B 75.645 1240 198 50 966 2165 657317983 657319158 3.640000e-144 521.0
24 TraesCS7A01G487000 chr7B 85.484 434 45 9 2630 3053 656550290 656549865 1.360000e-118 436.0
25 TraesCS7A01G487000 chr7B 84.144 473 41 23 2437 2887 731586069 731585609 8.160000e-116 427.0
26 TraesCS7A01G487000 chr7B 83.827 371 39 14 2630 2988 657077961 657078322 1.830000e-87 333.0
27 TraesCS7A01G487000 chr7B 87.059 85 6 5 683 763 64075317 64075400 1.220000e-14 91.6
28 TraesCS7A01G487000 chr5A 97.586 290 7 0 1 290 619720427 619720138 6.140000e-137 497.0
29 TraesCS7A01G487000 chr5A 97.241 290 7 1 1 290 540035126 540034838 1.030000e-134 490.0
30 TraesCS7A01G487000 chr1A 97.586 290 7 0 1 290 90806134 90806423 6.140000e-137 497.0
31 TraesCS7A01G487000 chr3A 96.886 289 9 0 1 289 581256265 581256553 4.780000e-133 484.0
32 TraesCS7A01G487000 chr2D 95.286 297 11 3 1 294 33912417 33912713 4.810000e-128 468.0
33 TraesCS7A01G487000 chr3D 93.581 296 17 2 1 296 456932477 456932770 1.050000e-119 440.0
34 TraesCS7A01G487000 chr3D 91.126 293 21 5 1 291 580277442 580277153 2.980000e-105 392.0
35 TraesCS7A01G487000 chr4A 94.035 285 16 1 1 285 694745535 694745252 6.310000e-117 431.0
36 TraesCS7A01G487000 chr5B 85.068 221 14 11 2640 2849 638209991 638209779 1.160000e-49 207.0
37 TraesCS7A01G487000 chr5B 85.507 207 15 7 2640 2837 449633724 449633924 5.390000e-48 202.0
38 TraesCS7A01G487000 chr5B 89.231 65 5 2 683 746 437204513 437204576 2.630000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G487000 chr7A 677721539 677724723 3184 True 5882.000000 5882 100.000000 1 3185 1 chr7A.!!$R1 3184
1 TraesCS7A01G487000 chr7A 677821256 677823405 2149 False 2599.000000 2599 88.838000 873 2988 1 chr7A.!!$F1 2115
2 TraesCS7A01G487000 chr7A 678144709 678146284 1575 True 822.000000 822 76.829000 911 2486 1 chr7A.!!$R3 1575
3 TraesCS7A01G487000 chr7A 677838873 677840088 1215 False 804.000000 804 79.019000 875 2095 1 chr7A.!!$F2 1220
4 TraesCS7A01G487000 chr7A 677994386 677995478 1092 True 632.000000 632 77.601000 1002 2117 1 chr7A.!!$R2 1115
5 TraesCS7A01G487000 chr7D 586688696 586690364 1668 False 1893.000000 1893 87.471000 963 2634 1 chr7D.!!$F1 1671
6 TraesCS7A01G487000 chr7D 586506861 586509739 2878 True 1726.000000 2872 89.885500 427 3053 2 chr7D.!!$R4 2626
7 TraesCS7A01G487000 chr7D 586700213 586702269 2056 False 1271.000000 1271 78.659000 1002 3050 1 chr7D.!!$F2 2048
8 TraesCS7A01G487000 chr7D 586500185 586500928 743 True 774.000000 774 85.865000 1988 2724 1 chr7D.!!$R2 736
9 TraesCS7A01G487000 chr7D 586745744 586746930 1186 False 520.000000 520 75.464000 966 2165 1 chr7D.!!$F3 1199
10 TraesCS7A01G487000 chr7B 656928762 656930419 1657 False 1984.000000 1984 88.630000 963 2593 1 chr7B.!!$F2 1630
11 TraesCS7A01G487000 chr7B 657084507 657086671 2164 False 1380.000000 1380 78.809000 860 3050 1 chr7B.!!$F3 2190
12 TraesCS7A01G487000 chr7B 656549865 656552483 2618 True 1266.000000 2420 91.850333 672 3053 3 chr7B.!!$R4 2381
13 TraesCS7A01G487000 chr7B 656527829 656529703 1874 True 965.000000 965 76.900000 873 2796 1 chr7B.!!$R1 1923
14 TraesCS7A01G487000 chr7B 657661796 657663356 1560 True 830.000000 830 77.131000 911 2486 1 chr7B.!!$R2 1575
15 TraesCS7A01G487000 chr7B 657076564 657078322 1758 False 760.333333 1338 88.880000 427 3005 3 chr7B.!!$F7 2578
16 TraesCS7A01G487000 chr7B 657420548 657421693 1145 False 593.000000 593 76.599000 1002 2165 1 chr7B.!!$F6 1163
17 TraesCS7A01G487000 chr7B 657338720 657339359 639 False 523.000000 523 81.692000 873 1513 1 chr7B.!!$F5 640
18 TraesCS7A01G487000 chr7B 657317983 657319158 1175 False 521.000000 521 75.645000 966 2165 1 chr7B.!!$F4 1199

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
64 65 0.039437 TCGTCAAAGTCGGAGCTGTC 60.039 55.0 0.00 0.0 0.00 3.51 F
363 364 0.041400 CGCACGTGCAAATGAGTCAA 60.041 50.0 37.03 0.0 42.21 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1010 1292 1.305297 TGGGTGAGCCTCGACATCT 60.305 57.895 1.06 0.0 34.45 2.90 R
2214 2644 0.107312 ACTGAGCACCTCATCCATGC 60.107 55.000 0.00 0.0 39.92 4.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 4.644103 CAAGTCCTGCATATTTCCCTTG 57.356 45.455 0.00 0.00 0.00 3.61
36 37 4.019174 CAAGTCCTGCATATTTCCCTTGT 58.981 43.478 0.00 0.00 0.00 3.16
37 38 3.624777 AGTCCTGCATATTTCCCTTGTG 58.375 45.455 0.00 0.00 0.00 3.33
38 39 3.266772 AGTCCTGCATATTTCCCTTGTGA 59.733 43.478 0.00 0.00 0.00 3.58
39 40 4.079558 AGTCCTGCATATTTCCCTTGTGAT 60.080 41.667 0.00 0.00 0.00 3.06
40 41 4.037208 GTCCTGCATATTTCCCTTGTGATG 59.963 45.833 0.00 0.00 0.00 3.07
41 42 4.079844 TCCTGCATATTTCCCTTGTGATGA 60.080 41.667 0.00 0.00 0.00 2.92
42 43 4.831155 CCTGCATATTTCCCTTGTGATGAT 59.169 41.667 0.00 0.00 0.00 2.45
43 44 5.048224 CCTGCATATTTCCCTTGTGATGATC 60.048 44.000 0.00 0.00 0.00 2.92
44 45 5.447757 TGCATATTTCCCTTGTGATGATCA 58.552 37.500 0.00 0.00 0.00 2.92
45 46 6.072649 TGCATATTTCCCTTGTGATGATCAT 58.927 36.000 8.25 8.25 0.00 2.45
46 47 6.208007 TGCATATTTCCCTTGTGATGATCATC 59.792 38.462 25.91 25.91 38.29 2.92
47 48 6.622245 GCATATTTCCCTTGTGATGATCATCG 60.622 42.308 26.52 14.45 40.63 3.84
48 49 3.912496 TTCCCTTGTGATGATCATCGT 57.088 42.857 26.52 0.00 40.63 3.73
49 50 3.459232 TCCCTTGTGATGATCATCGTC 57.541 47.619 26.52 21.84 40.63 4.20
50 51 2.765699 TCCCTTGTGATGATCATCGTCA 59.234 45.455 26.52 23.73 39.87 4.35
51 52 3.197549 TCCCTTGTGATGATCATCGTCAA 59.802 43.478 28.10 28.10 43.30 3.18
52 53 3.940852 CCCTTGTGATGATCATCGTCAAA 59.059 43.478 28.87 20.31 43.30 2.69
53 54 4.034858 CCCTTGTGATGATCATCGTCAAAG 59.965 45.833 28.87 25.38 43.30 2.77
54 55 4.633126 CCTTGTGATGATCATCGTCAAAGT 59.367 41.667 28.87 4.06 43.30 2.66
55 56 5.220548 CCTTGTGATGATCATCGTCAAAGTC 60.221 44.000 28.87 11.80 43.30 3.01
56 57 3.859386 TGTGATGATCATCGTCAAAGTCG 59.141 43.478 26.52 0.00 43.30 4.18
57 58 3.243877 GTGATGATCATCGTCAAAGTCGG 59.756 47.826 26.52 0.00 43.30 4.79
58 59 3.130340 TGATGATCATCGTCAAAGTCGGA 59.870 43.478 26.52 5.66 39.27 4.55
59 60 3.150848 TGATCATCGTCAAAGTCGGAG 57.849 47.619 0.00 0.00 0.00 4.63
60 61 1.855360 GATCATCGTCAAAGTCGGAGC 59.145 52.381 0.00 0.00 0.00 4.70
61 62 0.888619 TCATCGTCAAAGTCGGAGCT 59.111 50.000 0.00 0.00 0.00 4.09
62 63 0.994995 CATCGTCAAAGTCGGAGCTG 59.005 55.000 0.00 0.00 0.00 4.24
63 64 0.603569 ATCGTCAAAGTCGGAGCTGT 59.396 50.000 0.00 0.00 0.00 4.40
64 65 0.039437 TCGTCAAAGTCGGAGCTGTC 60.039 55.000 0.00 0.00 0.00 3.51
65 66 1.337817 CGTCAAAGTCGGAGCTGTCG 61.338 60.000 0.00 0.00 0.00 4.35
66 67 1.009389 GTCAAAGTCGGAGCTGTCGG 61.009 60.000 0.00 0.00 0.00 4.79
67 68 1.006102 CAAAGTCGGAGCTGTCGGT 60.006 57.895 0.00 0.00 0.00 4.69
68 69 0.600255 CAAAGTCGGAGCTGTCGGTT 60.600 55.000 0.00 0.00 0.00 4.44
69 70 0.600255 AAAGTCGGAGCTGTCGGTTG 60.600 55.000 0.00 0.00 0.00 3.77
70 71 1.745320 AAGTCGGAGCTGTCGGTTGT 61.745 55.000 0.00 0.00 0.00 3.32
71 72 1.300697 GTCGGAGCTGTCGGTTGTT 60.301 57.895 0.00 0.00 0.00 2.83
72 73 1.006571 TCGGAGCTGTCGGTTGTTC 60.007 57.895 0.00 0.00 0.00 3.18
73 74 1.300620 CGGAGCTGTCGGTTGTTCA 60.301 57.895 0.00 0.00 0.00 3.18
74 75 1.557443 CGGAGCTGTCGGTTGTTCAC 61.557 60.000 0.00 0.00 0.00 3.18
75 76 1.557443 GGAGCTGTCGGTTGTTCACG 61.557 60.000 0.00 0.00 0.00 4.35
76 77 2.159272 GAGCTGTCGGTTGTTCACGC 62.159 60.000 0.00 0.00 0.00 5.34
77 78 2.544359 CTGTCGGTTGTTCACGCG 59.456 61.111 3.53 3.53 0.00 6.01
78 79 2.202770 TGTCGGTTGTTCACGCGT 60.203 55.556 5.58 5.58 0.00 6.01
79 80 2.244382 GTCGGTTGTTCACGCGTG 59.756 61.111 32.76 32.76 0.00 5.34
80 81 2.202770 TCGGTTGTTCACGCGTGT 60.203 55.556 35.74 0.00 0.00 4.49
82 83 2.326550 GGTTGTTCACGCGTGTGG 59.673 61.111 35.74 14.10 46.42 4.17
83 84 2.351888 GTTGTTCACGCGTGTGGC 60.352 61.111 35.74 25.72 46.42 5.01
84 85 3.578272 TTGTTCACGCGTGTGGCC 61.578 61.111 35.74 22.07 46.42 5.36
85 86 4.539083 TGTTCACGCGTGTGGCCT 62.539 61.111 35.74 0.00 46.42 5.19
86 87 3.276846 GTTCACGCGTGTGGCCTT 61.277 61.111 35.74 0.00 46.42 4.35
87 88 2.970324 TTCACGCGTGTGGCCTTC 60.970 61.111 35.74 0.00 46.42 3.46
88 89 3.454587 TTCACGCGTGTGGCCTTCT 62.455 57.895 35.74 0.00 46.42 2.85
89 90 3.716006 CACGCGTGTGGCCTTCTG 61.716 66.667 30.50 0.79 42.59 3.02
90 91 4.235762 ACGCGTGTGGCCTTCTGT 62.236 61.111 12.93 0.00 38.94 3.41
91 92 2.972505 CGCGTGTGGCCTTCTGTT 60.973 61.111 3.32 0.00 38.94 3.16
92 93 2.639286 GCGTGTGGCCTTCTGTTG 59.361 61.111 3.32 0.00 34.80 3.33
93 94 2.908073 GCGTGTGGCCTTCTGTTGG 61.908 63.158 3.32 0.00 34.80 3.77
112 113 2.389962 GCATGTGCCATCATGGTTTT 57.610 45.000 5.31 0.00 43.54 2.43
113 114 2.273557 GCATGTGCCATCATGGTTTTC 58.726 47.619 5.31 0.00 43.54 2.29
114 115 2.093869 GCATGTGCCATCATGGTTTTCT 60.094 45.455 5.31 0.00 43.54 2.52
115 116 3.517602 CATGTGCCATCATGGTTTTCTG 58.482 45.455 5.31 0.00 40.46 3.02
116 117 2.596346 TGTGCCATCATGGTTTTCTGT 58.404 42.857 5.31 0.00 40.46 3.41
117 118 2.296752 TGTGCCATCATGGTTTTCTGTG 59.703 45.455 5.31 0.00 40.46 3.66
118 119 1.273048 TGCCATCATGGTTTTCTGTGC 59.727 47.619 5.31 0.00 40.46 4.57
119 120 1.273048 GCCATCATGGTTTTCTGTGCA 59.727 47.619 5.31 0.00 40.46 4.57
120 121 2.673043 GCCATCATGGTTTTCTGTGCAG 60.673 50.000 5.31 0.00 40.46 4.41
121 122 2.602878 CATCATGGTTTTCTGTGCAGC 58.397 47.619 0.00 0.00 0.00 5.25
122 123 1.985473 TCATGGTTTTCTGTGCAGCT 58.015 45.000 0.00 0.00 0.00 4.24
123 124 1.610038 TCATGGTTTTCTGTGCAGCTG 59.390 47.619 10.11 10.11 0.00 4.24
124 125 1.338973 CATGGTTTTCTGTGCAGCTGT 59.661 47.619 16.64 0.00 0.00 4.40
125 126 1.473258 TGGTTTTCTGTGCAGCTGTT 58.527 45.000 16.64 0.00 0.00 3.16
126 127 1.824230 TGGTTTTCTGTGCAGCTGTTT 59.176 42.857 16.64 0.00 0.00 2.83
127 128 2.195922 GGTTTTCTGTGCAGCTGTTTG 58.804 47.619 16.64 3.79 0.00 2.93
128 129 2.417243 GGTTTTCTGTGCAGCTGTTTGT 60.417 45.455 16.64 0.00 0.00 2.83
129 130 3.181491 GGTTTTCTGTGCAGCTGTTTGTA 60.181 43.478 16.64 0.00 0.00 2.41
130 131 3.969117 TTTCTGTGCAGCTGTTTGTAG 57.031 42.857 16.64 7.34 0.00 2.74
131 132 1.229428 TCTGTGCAGCTGTTTGTAGC 58.771 50.000 16.64 0.00 44.01 3.58
142 143 4.061596 GCTGTTTGTAGCTCTATGATCCC 58.938 47.826 0.00 0.00 40.52 3.85
143 144 4.443457 GCTGTTTGTAGCTCTATGATCCCA 60.443 45.833 0.00 0.00 40.52 4.37
144 145 5.744300 GCTGTTTGTAGCTCTATGATCCCAT 60.744 44.000 0.00 0.00 40.52 4.00
145 146 5.614308 TGTTTGTAGCTCTATGATCCCATG 58.386 41.667 0.00 0.00 34.31 3.66
146 147 5.130975 TGTTTGTAGCTCTATGATCCCATGT 59.869 40.000 0.00 0.00 34.31 3.21
147 148 5.474578 TTGTAGCTCTATGATCCCATGTC 57.525 43.478 0.00 0.00 34.31 3.06
148 149 3.507622 TGTAGCTCTATGATCCCATGTCG 59.492 47.826 0.00 0.00 34.31 4.35
149 150 1.898472 AGCTCTATGATCCCATGTCGG 59.102 52.381 0.00 0.00 34.31 4.79
150 151 1.620819 GCTCTATGATCCCATGTCGGT 59.379 52.381 0.00 0.00 34.31 4.69
151 152 2.611473 GCTCTATGATCCCATGTCGGTG 60.611 54.545 0.00 0.00 34.31 4.94
152 153 1.970640 TCTATGATCCCATGTCGGTGG 59.029 52.381 0.00 0.00 39.05 4.61
153 154 0.396435 TATGATCCCATGTCGGTGGC 59.604 55.000 0.00 0.00 37.96 5.01
154 155 2.203209 GATCCCATGTCGGTGGCC 60.203 66.667 0.00 0.00 37.96 5.36
155 156 3.014538 ATCCCATGTCGGTGGCCA 61.015 61.111 0.00 0.00 37.96 5.36
156 157 2.947938 GATCCCATGTCGGTGGCCAG 62.948 65.000 5.11 0.00 37.96 4.85
157 158 4.802051 CCCATGTCGGTGGCCAGG 62.802 72.222 5.11 0.62 37.96 4.45
158 159 4.033776 CCATGTCGGTGGCCAGGT 62.034 66.667 5.11 0.00 31.43 4.00
159 160 2.034066 CATGTCGGTGGCCAGGTT 59.966 61.111 5.11 0.00 0.00 3.50
160 161 2.034066 ATGTCGGTGGCCAGGTTG 59.966 61.111 5.11 0.00 0.00 3.77
161 162 3.567579 ATGTCGGTGGCCAGGTTGG 62.568 63.158 5.11 0.00 41.55 3.77
179 180 4.343323 CCGGTGGTGCCCATGTCA 62.343 66.667 0.00 0.00 35.28 3.58
180 181 2.045045 CGGTGGTGCCCATGTCAT 60.045 61.111 0.00 0.00 35.28 3.06
181 182 2.409055 CGGTGGTGCCCATGTCATG 61.409 63.158 5.79 5.79 35.28 3.07
182 183 1.304381 GGTGGTGCCCATGTCATGT 60.304 57.895 11.84 0.00 35.28 3.21
183 184 1.597797 GGTGGTGCCCATGTCATGTG 61.598 60.000 11.84 1.28 35.28 3.21
184 185 1.304299 TGGTGCCCATGTCATGTGG 60.304 57.895 11.84 12.67 36.47 4.17
191 192 2.205022 CCATGTCATGTGGGTTGAGT 57.795 50.000 11.84 0.00 32.98 3.41
192 193 2.517959 CCATGTCATGTGGGTTGAGTT 58.482 47.619 11.84 0.00 32.98 3.01
193 194 2.229543 CCATGTCATGTGGGTTGAGTTG 59.770 50.000 11.84 0.00 32.98 3.16
194 195 2.727123 TGTCATGTGGGTTGAGTTGT 57.273 45.000 0.00 0.00 0.00 3.32
195 196 3.847671 TGTCATGTGGGTTGAGTTGTA 57.152 42.857 0.00 0.00 0.00 2.41
196 197 4.365514 TGTCATGTGGGTTGAGTTGTAT 57.634 40.909 0.00 0.00 0.00 2.29
197 198 4.323417 TGTCATGTGGGTTGAGTTGTATC 58.677 43.478 0.00 0.00 0.00 2.24
198 199 3.370978 GTCATGTGGGTTGAGTTGTATCG 59.629 47.826 0.00 0.00 0.00 2.92
199 200 2.465860 TGTGGGTTGAGTTGTATCGG 57.534 50.000 0.00 0.00 0.00 4.18
200 201 1.695242 TGTGGGTTGAGTTGTATCGGT 59.305 47.619 0.00 0.00 0.00 4.69
201 202 2.105134 TGTGGGTTGAGTTGTATCGGTT 59.895 45.455 0.00 0.00 0.00 4.44
202 203 3.143728 GTGGGTTGAGTTGTATCGGTTT 58.856 45.455 0.00 0.00 0.00 3.27
203 204 3.566742 GTGGGTTGAGTTGTATCGGTTTT 59.433 43.478 0.00 0.00 0.00 2.43
204 205 4.756135 GTGGGTTGAGTTGTATCGGTTTTA 59.244 41.667 0.00 0.00 0.00 1.52
205 206 4.998672 TGGGTTGAGTTGTATCGGTTTTAG 59.001 41.667 0.00 0.00 0.00 1.85
206 207 4.142752 GGGTTGAGTTGTATCGGTTTTAGC 60.143 45.833 0.00 0.00 0.00 3.09
207 208 4.142752 GGTTGAGTTGTATCGGTTTTAGCC 60.143 45.833 0.00 0.00 0.00 3.93
208 209 3.602483 TGAGTTGTATCGGTTTTAGCCC 58.398 45.455 0.00 0.00 0.00 5.19
209 210 2.606272 GAGTTGTATCGGTTTTAGCCCG 59.394 50.000 0.00 0.00 46.83 6.13
210 211 1.667212 GTTGTATCGGTTTTAGCCCGG 59.333 52.381 0.00 0.00 45.51 5.73
211 212 0.462403 TGTATCGGTTTTAGCCCGGC 60.462 55.000 0.00 0.00 45.51 6.13
212 213 0.179065 GTATCGGTTTTAGCCCGGCT 60.179 55.000 18.05 18.05 45.51 5.52
213 214 0.542805 TATCGGTTTTAGCCCGGCTT 59.457 50.000 19.35 1.59 45.51 4.35
214 215 0.323087 ATCGGTTTTAGCCCGGCTTT 60.323 50.000 19.35 0.00 45.51 3.51
215 216 0.956902 TCGGTTTTAGCCCGGCTTTC 60.957 55.000 19.35 5.82 45.51 2.62
216 217 1.888018 GGTTTTAGCCCGGCTTTCC 59.112 57.895 19.35 11.18 40.44 3.13
217 218 0.896479 GGTTTTAGCCCGGCTTTCCA 60.896 55.000 19.35 0.00 40.44 3.53
218 219 1.182667 GTTTTAGCCCGGCTTTCCAT 58.817 50.000 19.35 0.00 40.44 3.41
219 220 1.134367 GTTTTAGCCCGGCTTTCCATC 59.866 52.381 19.35 0.43 40.44 3.51
220 221 0.329931 TTTAGCCCGGCTTTCCATCA 59.670 50.000 19.35 0.00 40.44 3.07
221 222 0.329931 TTAGCCCGGCTTTCCATCAA 59.670 50.000 19.35 0.09 40.44 2.57
222 223 0.550914 TAGCCCGGCTTTCCATCAAT 59.449 50.000 19.35 0.00 40.44 2.57
223 224 0.324645 AGCCCGGCTTTCCATCAATT 60.325 50.000 5.94 0.00 33.89 2.32
224 225 1.064017 AGCCCGGCTTTCCATCAATTA 60.064 47.619 5.94 0.00 33.89 1.40
225 226 1.754226 GCCCGGCTTTCCATCAATTAA 59.246 47.619 0.71 0.00 0.00 1.40
226 227 2.481276 GCCCGGCTTTCCATCAATTAAC 60.481 50.000 0.71 0.00 0.00 2.01
227 228 2.100749 CCCGGCTTTCCATCAATTAACC 59.899 50.000 0.00 0.00 0.00 2.85
228 229 2.223479 CCGGCTTTCCATCAATTAACCG 60.223 50.000 0.00 0.00 37.88 4.44
229 230 2.223479 CGGCTTTCCATCAATTAACCGG 60.223 50.000 0.00 0.00 34.63 5.28
230 231 2.100749 GGCTTTCCATCAATTAACCGGG 59.899 50.000 6.32 0.00 0.00 5.73
231 232 2.481276 GCTTTCCATCAATTAACCGGGC 60.481 50.000 6.32 0.00 0.00 6.13
232 233 2.516227 TTCCATCAATTAACCGGGCA 57.484 45.000 6.32 0.00 0.00 5.36
233 234 2.516227 TCCATCAATTAACCGGGCAA 57.484 45.000 6.32 0.00 0.00 4.52
234 235 2.374184 TCCATCAATTAACCGGGCAAG 58.626 47.619 6.32 0.00 0.00 4.01
235 236 2.099405 CCATCAATTAACCGGGCAAGT 58.901 47.619 6.32 0.00 0.00 3.16
236 237 2.099098 CCATCAATTAACCGGGCAAGTC 59.901 50.000 6.32 0.00 0.00 3.01
237 238 2.871096 TCAATTAACCGGGCAAGTCT 57.129 45.000 6.32 0.00 0.00 3.24
238 239 2.706890 TCAATTAACCGGGCAAGTCTC 58.293 47.619 6.32 0.00 0.00 3.36
239 240 2.304761 TCAATTAACCGGGCAAGTCTCT 59.695 45.455 6.32 0.00 0.00 3.10
240 241 3.081804 CAATTAACCGGGCAAGTCTCTT 58.918 45.455 6.32 0.00 0.00 2.85
241 242 2.467566 TTAACCGGGCAAGTCTCTTC 57.532 50.000 6.32 0.00 0.00 2.87
242 243 1.640917 TAACCGGGCAAGTCTCTTCT 58.359 50.000 6.32 0.00 0.00 2.85
243 244 0.765510 AACCGGGCAAGTCTCTTCTT 59.234 50.000 6.32 0.00 0.00 2.52
244 245 0.321996 ACCGGGCAAGTCTCTTCTTC 59.678 55.000 6.32 0.00 0.00 2.87
245 246 0.610687 CCGGGCAAGTCTCTTCTTCT 59.389 55.000 0.00 0.00 0.00 2.85
246 247 1.002544 CCGGGCAAGTCTCTTCTTCTT 59.997 52.381 0.00 0.00 0.00 2.52
247 248 2.233922 CCGGGCAAGTCTCTTCTTCTTA 59.766 50.000 0.00 0.00 0.00 2.10
248 249 3.306780 CCGGGCAAGTCTCTTCTTCTTAA 60.307 47.826 0.00 0.00 0.00 1.85
249 250 4.508662 CGGGCAAGTCTCTTCTTCTTAAT 58.491 43.478 0.00 0.00 0.00 1.40
250 251 4.568760 CGGGCAAGTCTCTTCTTCTTAATC 59.431 45.833 0.00 0.00 0.00 1.75
251 252 5.491982 GGGCAAGTCTCTTCTTCTTAATCA 58.508 41.667 0.00 0.00 0.00 2.57
252 253 5.940470 GGGCAAGTCTCTTCTTCTTAATCAA 59.060 40.000 0.00 0.00 0.00 2.57
253 254 6.601217 GGGCAAGTCTCTTCTTCTTAATCAAT 59.399 38.462 0.00 0.00 0.00 2.57
254 255 7.414984 GGGCAAGTCTCTTCTTCTTAATCAATG 60.415 40.741 0.00 0.00 0.00 2.82
255 256 7.335422 GGCAAGTCTCTTCTTCTTAATCAATGA 59.665 37.037 0.00 0.00 0.00 2.57
256 257 8.725148 GCAAGTCTCTTCTTCTTAATCAATGAA 58.275 33.333 0.00 0.00 0.00 2.57
262 263 9.298774 CTCTTCTTCTTAATCAATGAAAATGGC 57.701 33.333 0.00 0.00 0.00 4.40
263 264 8.805175 TCTTCTTCTTAATCAATGAAAATGGCA 58.195 29.630 0.00 0.00 0.00 4.92
264 265 9.426837 CTTCTTCTTAATCAATGAAAATGGCAA 57.573 29.630 0.00 0.00 0.00 4.52
265 266 9.775854 TTCTTCTTAATCAATGAAAATGGCAAA 57.224 25.926 0.00 0.00 0.00 3.68
266 267 9.947433 TCTTCTTAATCAATGAAAATGGCAAAT 57.053 25.926 0.00 0.00 0.00 2.32
309 310 6.949352 AAAATAAGATACACCCAGAGCATG 57.051 37.500 0.00 0.00 0.00 4.06
310 311 5.636903 AATAAGATACACCCAGAGCATGT 57.363 39.130 0.00 0.00 0.00 3.21
311 312 6.747414 AATAAGATACACCCAGAGCATGTA 57.253 37.500 0.00 0.00 33.54 2.29
312 313 4.408182 AAGATACACCCAGAGCATGTAC 57.592 45.455 0.00 0.00 31.88 2.90
313 314 3.647636 AGATACACCCAGAGCATGTACT 58.352 45.455 0.00 0.00 31.88 2.73
314 315 4.033709 AGATACACCCAGAGCATGTACTT 58.966 43.478 0.00 0.00 31.88 2.24
315 316 2.770164 ACACCCAGAGCATGTACTTC 57.230 50.000 0.00 0.00 0.00 3.01
316 317 2.260822 ACACCCAGAGCATGTACTTCT 58.739 47.619 0.00 0.00 0.00 2.85
317 318 2.234908 ACACCCAGAGCATGTACTTCTC 59.765 50.000 0.00 0.00 0.00 2.87
318 319 2.499289 CACCCAGAGCATGTACTTCTCT 59.501 50.000 0.00 0.54 37.66 3.10
319 320 3.701542 CACCCAGAGCATGTACTTCTCTA 59.298 47.826 10.32 0.00 35.60 2.43
320 321 4.160439 CACCCAGAGCATGTACTTCTCTAA 59.840 45.833 10.32 0.00 35.60 2.10
321 322 4.777896 ACCCAGAGCATGTACTTCTCTAAA 59.222 41.667 10.32 0.00 35.60 1.85
322 323 5.248477 ACCCAGAGCATGTACTTCTCTAAAA 59.752 40.000 10.32 0.00 35.60 1.52
323 324 6.173339 CCCAGAGCATGTACTTCTCTAAAAA 58.827 40.000 10.32 0.00 35.60 1.94
349 350 8.609478 AATCAGTAAATTATAAAAACCGCACG 57.391 30.769 0.00 0.00 0.00 5.34
350 351 7.131498 TCAGTAAATTATAAAAACCGCACGT 57.869 32.000 0.00 0.00 0.00 4.49
351 352 7.016466 TCAGTAAATTATAAAAACCGCACGTG 58.984 34.615 12.28 12.28 0.00 4.49
352 353 5.796437 AGTAAATTATAAAAACCGCACGTGC 59.204 36.000 30.42 30.42 37.78 5.34
353 354 3.833545 ATTATAAAAACCGCACGTGCA 57.166 38.095 37.03 18.56 42.21 4.57
354 355 3.620929 TTATAAAAACCGCACGTGCAA 57.379 38.095 37.03 19.20 42.21 4.08
355 356 2.493713 ATAAAAACCGCACGTGCAAA 57.506 40.000 37.03 15.61 42.21 3.68
356 357 2.493713 TAAAAACCGCACGTGCAAAT 57.506 40.000 37.03 20.53 42.21 2.32
357 358 0.926846 AAAAACCGCACGTGCAAATG 59.073 45.000 37.03 24.17 42.21 2.32
358 359 0.101399 AAAACCGCACGTGCAAATGA 59.899 45.000 37.03 0.00 42.21 2.57
359 360 0.317770 AAACCGCACGTGCAAATGAG 60.318 50.000 37.03 20.83 42.21 2.90
360 361 1.444119 AACCGCACGTGCAAATGAGT 61.444 50.000 37.03 21.13 42.21 3.41
361 362 1.154413 CCGCACGTGCAAATGAGTC 60.154 57.895 37.03 7.62 42.21 3.36
362 363 1.569003 CGCACGTGCAAATGAGTCA 59.431 52.632 37.03 0.00 42.21 3.41
363 364 0.041400 CGCACGTGCAAATGAGTCAA 60.041 50.000 37.03 0.00 42.21 3.18
364 365 1.678360 GCACGTGCAAATGAGTCAAG 58.322 50.000 34.52 0.00 41.59 3.02
365 366 1.002468 GCACGTGCAAATGAGTCAAGT 60.002 47.619 34.52 0.00 41.59 3.16
366 367 2.223144 GCACGTGCAAATGAGTCAAGTA 59.777 45.455 34.52 0.00 41.59 2.24
367 368 3.120199 GCACGTGCAAATGAGTCAAGTAT 60.120 43.478 34.52 0.00 41.59 2.12
368 369 4.397382 CACGTGCAAATGAGTCAAGTATG 58.603 43.478 0.82 0.00 0.00 2.39
369 370 4.065088 ACGTGCAAATGAGTCAAGTATGT 58.935 39.130 0.00 0.00 0.00 2.29
370 371 4.515191 ACGTGCAAATGAGTCAAGTATGTT 59.485 37.500 0.00 0.00 0.00 2.71
371 372 5.008613 ACGTGCAAATGAGTCAAGTATGTTT 59.991 36.000 0.00 0.00 0.00 2.83
372 373 5.340403 CGTGCAAATGAGTCAAGTATGTTTG 59.660 40.000 0.00 3.60 0.00 2.93
373 374 5.117592 GTGCAAATGAGTCAAGTATGTTTGC 59.882 40.000 23.40 23.40 45.93 3.68
374 375 5.221880 GCAAATGAGTCAAGTATGTTTGCA 58.778 37.500 24.48 0.00 45.39 4.08
375 376 5.117592 GCAAATGAGTCAAGTATGTTTGCAC 59.882 40.000 24.48 5.92 45.39 4.57
376 377 6.207928 CAAATGAGTCAAGTATGTTTGCACA 58.792 36.000 0.00 0.00 37.31 4.57
377 378 6.579666 AATGAGTCAAGTATGTTTGCACAT 57.420 33.333 0.00 0.00 46.07 3.21
378 379 7.686438 AATGAGTCAAGTATGTTTGCACATA 57.314 32.000 0.00 0.00 42.24 2.29
379 380 7.686438 ATGAGTCAAGTATGTTTGCACATAA 57.314 32.000 0.00 0.00 45.63 1.90
380 381 7.503521 TGAGTCAAGTATGTTTGCACATAAA 57.496 32.000 0.00 0.00 45.63 1.40
381 382 7.935520 TGAGTCAAGTATGTTTGCACATAAAA 58.064 30.769 0.00 0.00 45.63 1.52
382 383 8.409371 TGAGTCAAGTATGTTTGCACATAAAAA 58.591 29.630 0.00 0.00 45.63 1.94
383 384 9.410556 GAGTCAAGTATGTTTGCACATAAAAAT 57.589 29.630 0.00 0.00 45.63 1.82
384 385 9.762933 AGTCAAGTATGTTTGCACATAAAAATT 57.237 25.926 0.00 0.00 45.63 1.82
425 426 6.639671 TTTTTGTGATTCGTGAAAAAGGTG 57.360 33.333 0.00 0.00 0.00 4.00
426 427 5.568685 TTTGTGATTCGTGAAAAAGGTGA 57.431 34.783 0.00 0.00 0.00 4.02
427 428 4.545823 TGTGATTCGTGAAAAAGGTGAC 57.454 40.909 0.00 0.00 0.00 3.67
429 430 4.272504 TGTGATTCGTGAAAAAGGTGACTC 59.727 41.667 0.00 0.00 42.68 3.36
430 431 4.511826 GTGATTCGTGAAAAAGGTGACTCT 59.488 41.667 0.00 0.00 42.68 3.24
431 432 5.007724 GTGATTCGTGAAAAAGGTGACTCTT 59.992 40.000 0.00 0.00 42.68 2.85
432 433 4.875544 TTCGTGAAAAAGGTGACTCTTG 57.124 40.909 0.00 0.00 42.68 3.02
488 492 6.751514 ATCGCAAAATTTACTGGTACATGA 57.248 33.333 0.00 0.00 38.20 3.07
516 520 6.977502 CACTCTAAGATCTACACACCAGATTG 59.022 42.308 0.00 0.00 32.86 2.67
519 523 4.399004 AGATCTACACACCAGATTGCTC 57.601 45.455 0.00 0.00 32.86 4.26
537 541 7.874528 AGATTGCTCTCGGAAAAATTCAAAATT 59.125 29.630 0.00 0.00 0.00 1.82
590 594 2.160417 GGACCTTGTGCTCTTCAAATCG 59.840 50.000 0.00 0.00 0.00 3.34
641 649 8.934023 TTTTTATGTTAGAGGTTTCCATCACT 57.066 30.769 0.00 0.00 0.00 3.41
642 650 8.561738 TTTTATGTTAGAGGTTTCCATCACTC 57.438 34.615 0.00 0.00 0.00 3.51
696 710 4.962362 TCCTGGACTTGCATCTCAGTTATA 59.038 41.667 0.00 0.00 0.00 0.98
721 735 1.607148 GGCCGGGTGTAATGCTTAATC 59.393 52.381 2.18 0.00 0.00 1.75
728 742 7.193595 CCGGGTGTAATGCTTAATCTTTTTAG 58.806 38.462 0.00 0.00 0.00 1.85
803 820 9.796120 TTATATAAACGCATTTCCCTCAAAAAG 57.204 29.630 0.00 0.00 0.00 2.27
861 878 4.699522 GACCCGAGCACCACCCAC 62.700 72.222 0.00 0.00 0.00 4.61
1010 1292 3.321648 ACACGGCATGGAGGAGCA 61.322 61.111 0.00 0.00 0.00 4.26
1752 2136 1.467374 CCCGTGCCAAATTTCATCGAC 60.467 52.381 0.00 0.00 0.00 4.20
1872 2256 8.557864 TCAACTATATCTGTCTACGTTCTTAGC 58.442 37.037 0.00 0.00 0.00 3.09
2052 2448 9.806203 TTTATGGCTGATTTCAACAATAATGAG 57.194 29.630 0.00 0.00 0.00 2.90
2214 2644 2.159198 CCGCTGATTGAAAATGGGAAGG 60.159 50.000 0.00 0.00 0.00 3.46
2463 2905 2.028385 AGACATTTCCGTGTGTACCTCC 60.028 50.000 0.00 0.00 31.16 4.30
2534 3002 6.607600 AGACACTTGGTATGAGCTGTAGAATA 59.392 38.462 0.00 0.00 0.00 1.75
2698 3952 2.287644 GGTGTTTGCAATGTTTCTTGGC 59.712 45.455 0.00 0.00 0.00 4.52
2710 3965 5.923733 TGTTTCTTGGCCTCTTGTTTTTA 57.076 34.783 3.32 0.00 0.00 1.52
2713 3968 6.071051 TGTTTCTTGGCCTCTTGTTTTTACTT 60.071 34.615 3.32 0.00 0.00 2.24
2718 3973 6.777213 TGGCCTCTTGTTTTTACTTGTTTA 57.223 33.333 3.32 0.00 0.00 2.01
2719 3974 7.354751 TGGCCTCTTGTTTTTACTTGTTTAT 57.645 32.000 3.32 0.00 0.00 1.40
2720 3975 7.206687 TGGCCTCTTGTTTTTACTTGTTTATG 58.793 34.615 3.32 0.00 0.00 1.90
2721 3976 7.147811 TGGCCTCTTGTTTTTACTTGTTTATGT 60.148 33.333 3.32 0.00 0.00 2.29
2723 3978 9.738832 GCCTCTTGTTTTTACTTGTTTATGTTA 57.261 29.630 0.00 0.00 0.00 2.41
2787 4043 3.338249 TCATGCTAGCTCAAAGGTTGAC 58.662 45.455 17.23 0.00 35.46 3.18
2841 4100 3.805207 TCTCTTGATGATGCATGGACAG 58.195 45.455 2.46 0.00 0.00 3.51
2849 4108 1.747355 GATGCATGGACAGTTTCCTGG 59.253 52.381 2.46 0.00 46.10 4.45
2856 4115 2.158813 TGGACAGTTTCCTGGTCTGTTC 60.159 50.000 17.30 16.30 46.10 3.18
2891 4150 8.593945 AAGGATTCAAATTGAAACTATGGCTA 57.406 30.769 12.75 0.00 40.12 3.93
2892 4151 8.000780 AGGATTCAAATTGAAACTATGGCTAC 57.999 34.615 12.75 0.00 40.12 3.58
2970 4230 6.959639 ATTTAACTCTGTTCCAGCTTCAAA 57.040 33.333 0.00 0.00 0.00 2.69
2981 4242 5.804944 TCCAGCTTCAAAAATTTGGATGA 57.195 34.783 6.08 0.00 38.66 2.92
2984 4245 6.707161 TCCAGCTTCAAAAATTTGGATGAAAG 59.293 34.615 12.58 3.68 38.66 2.62
3013 4275 6.490492 AGCCCTTATCCAAAGCTTTTTACTA 58.510 36.000 9.53 0.00 0.00 1.82
3092 4354 5.914898 ATGTTTTACCTGAATGGCTAACC 57.085 39.130 0.00 0.00 40.22 2.85
3103 4365 2.656947 TGGCTAACCAAGAGTTGCTT 57.343 45.000 0.00 0.00 45.37 3.91
3104 4366 3.780804 TGGCTAACCAAGAGTTGCTTA 57.219 42.857 0.00 0.00 45.37 3.09
3105 4367 4.301072 TGGCTAACCAAGAGTTGCTTAT 57.699 40.909 0.00 0.00 45.37 1.73
3106 4368 4.009675 TGGCTAACCAAGAGTTGCTTATG 58.990 43.478 0.00 0.00 45.37 1.90
3107 4369 4.010349 GGCTAACCAAGAGTTGCTTATGT 58.990 43.478 0.00 0.00 39.67 2.29
3108 4370 4.459337 GGCTAACCAAGAGTTGCTTATGTT 59.541 41.667 0.00 0.00 39.67 2.71
3109 4371 5.646360 GGCTAACCAAGAGTTGCTTATGTTA 59.354 40.000 0.00 0.00 39.67 2.41
3110 4372 6.318900 GGCTAACCAAGAGTTGCTTATGTTAT 59.681 38.462 0.00 0.00 39.67 1.89
3111 4373 7.189512 GCTAACCAAGAGTTGCTTATGTTATG 58.810 38.462 0.00 0.00 39.67 1.90
3112 4374 6.515272 AACCAAGAGTTGCTTATGTTATGG 57.485 37.500 0.00 0.00 37.29 2.74
3113 4375 5.570320 ACCAAGAGTTGCTTATGTTATGGT 58.430 37.500 0.00 0.00 34.31 3.55
3114 4376 6.010219 ACCAAGAGTTGCTTATGTTATGGTT 58.990 36.000 0.00 0.00 34.31 3.67
3115 4377 6.493458 ACCAAGAGTTGCTTATGTTATGGTTT 59.507 34.615 0.00 0.00 34.31 3.27
3116 4378 7.015195 ACCAAGAGTTGCTTATGTTATGGTTTT 59.985 33.333 0.00 0.00 34.31 2.43
3117 4379 7.872483 CCAAGAGTTGCTTATGTTATGGTTTTT 59.128 33.333 0.00 0.00 34.31 1.94
3139 4401 8.492673 TTTTTGCACATACAGTTCTATCTAGG 57.507 34.615 0.00 0.00 0.00 3.02
3140 4402 6.791867 TTGCACATACAGTTCTATCTAGGT 57.208 37.500 0.00 0.00 0.00 3.08
3141 4403 6.149129 TGCACATACAGTTCTATCTAGGTG 57.851 41.667 0.00 0.00 0.00 4.00
3142 4404 5.656859 TGCACATACAGTTCTATCTAGGTGT 59.343 40.000 0.00 0.00 0.00 4.16
3143 4405 6.154534 TGCACATACAGTTCTATCTAGGTGTT 59.845 38.462 0.00 0.00 0.00 3.32
3144 4406 7.042335 GCACATACAGTTCTATCTAGGTGTTT 58.958 38.462 0.00 0.00 0.00 2.83
3145 4407 7.010552 GCACATACAGTTCTATCTAGGTGTTTG 59.989 40.741 0.00 0.00 0.00 2.93
3146 4408 7.010552 CACATACAGTTCTATCTAGGTGTTTGC 59.989 40.741 0.00 0.00 0.00 3.68
3147 4409 5.483685 ACAGTTCTATCTAGGTGTTTGCA 57.516 39.130 0.00 0.00 0.00 4.08
3148 4410 5.865085 ACAGTTCTATCTAGGTGTTTGCAA 58.135 37.500 0.00 0.00 0.00 4.08
3149 4411 5.934625 ACAGTTCTATCTAGGTGTTTGCAAG 59.065 40.000 0.00 0.00 0.00 4.01
3150 4412 5.352569 CAGTTCTATCTAGGTGTTTGCAAGG 59.647 44.000 0.00 0.00 0.00 3.61
3151 4413 5.013183 AGTTCTATCTAGGTGTTTGCAAGGT 59.987 40.000 0.00 0.00 0.00 3.50
3152 4414 5.499004 TCTATCTAGGTGTTTGCAAGGTT 57.501 39.130 0.00 0.00 0.00 3.50
3153 4415 5.876357 TCTATCTAGGTGTTTGCAAGGTTT 58.124 37.500 0.00 0.00 0.00 3.27
3154 4416 6.303839 TCTATCTAGGTGTTTGCAAGGTTTT 58.696 36.000 0.00 0.00 0.00 2.43
3155 4417 4.911514 TCTAGGTGTTTGCAAGGTTTTC 57.088 40.909 0.00 0.00 0.00 2.29
3156 4418 4.532834 TCTAGGTGTTTGCAAGGTTTTCT 58.467 39.130 0.00 0.00 0.00 2.52
3157 4419 4.953579 TCTAGGTGTTTGCAAGGTTTTCTT 59.046 37.500 0.00 0.00 35.79 2.52
3168 4430 4.696455 CAAGGTTTTCTTGGCATCTTTGT 58.304 39.130 0.00 0.00 46.81 2.83
3169 4431 5.118286 CAAGGTTTTCTTGGCATCTTTGTT 58.882 37.500 0.00 0.00 46.81 2.83
3170 4432 5.357742 AGGTTTTCTTGGCATCTTTGTTT 57.642 34.783 0.00 0.00 0.00 2.83
3171 4433 5.744171 AGGTTTTCTTGGCATCTTTGTTTT 58.256 33.333 0.00 0.00 0.00 2.43
3172 4434 6.179756 AGGTTTTCTTGGCATCTTTGTTTTT 58.820 32.000 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 4.019174 ACAAGGGAAATATGCAGGACTTG 58.981 43.478 0.00 0.00 39.76 3.16
15 16 4.019174 CACAAGGGAAATATGCAGGACTT 58.981 43.478 0.00 0.00 0.00 3.01
16 17 3.266772 TCACAAGGGAAATATGCAGGACT 59.733 43.478 0.00 0.00 0.00 3.85
17 18 3.620488 TCACAAGGGAAATATGCAGGAC 58.380 45.455 0.00 0.00 0.00 3.85
18 19 4.079844 TCATCACAAGGGAAATATGCAGGA 60.080 41.667 0.00 0.00 0.00 3.86
19 20 4.209538 TCATCACAAGGGAAATATGCAGG 58.790 43.478 0.00 0.00 0.00 4.85
20 21 5.533528 TGATCATCACAAGGGAAATATGCAG 59.466 40.000 0.00 0.00 0.00 4.41
21 22 5.447757 TGATCATCACAAGGGAAATATGCA 58.552 37.500 0.00 0.00 0.00 3.96
22 23 6.585695 ATGATCATCACAAGGGAAATATGC 57.414 37.500 1.18 0.00 0.00 3.14
23 24 6.429078 ACGATGATCATCACAAGGGAAATATG 59.571 38.462 30.13 14.06 37.69 1.78
24 25 6.537355 ACGATGATCATCACAAGGGAAATAT 58.463 36.000 30.13 0.00 37.69 1.28
25 26 5.928976 ACGATGATCATCACAAGGGAAATA 58.071 37.500 30.13 0.00 37.69 1.40
26 27 4.785301 ACGATGATCATCACAAGGGAAAT 58.215 39.130 30.13 0.00 37.69 2.17
27 28 4.191544 GACGATGATCATCACAAGGGAAA 58.808 43.478 30.13 0.00 37.69 3.13
28 29 3.197549 TGACGATGATCATCACAAGGGAA 59.802 43.478 30.13 8.19 37.69 3.97
29 30 2.765699 TGACGATGATCATCACAAGGGA 59.234 45.455 30.13 8.11 37.69 4.20
30 31 3.183793 TGACGATGATCATCACAAGGG 57.816 47.619 30.13 17.51 37.69 3.95
31 32 4.633126 ACTTTGACGATGATCATCACAAGG 59.367 41.667 30.20 30.20 37.69 3.61
32 33 5.499812 CGACTTTGACGATGATCATCACAAG 60.500 44.000 30.13 24.75 37.69 3.16
33 34 4.327087 CGACTTTGACGATGATCATCACAA 59.673 41.667 30.13 28.28 37.69 3.33
34 35 3.859386 CGACTTTGACGATGATCATCACA 59.141 43.478 30.13 25.21 37.69 3.58
35 36 3.243877 CCGACTTTGACGATGATCATCAC 59.756 47.826 30.13 23.35 37.69 3.06
36 37 3.130340 TCCGACTTTGACGATGATCATCA 59.870 43.478 30.13 14.07 37.69 3.07
37 38 3.706698 TCCGACTTTGACGATGATCATC 58.293 45.455 23.42 23.42 34.56 2.92
38 39 3.711086 CTCCGACTTTGACGATGATCAT 58.289 45.455 8.25 8.25 0.00 2.45
39 40 2.735444 GCTCCGACTTTGACGATGATCA 60.735 50.000 0.00 0.00 0.00 2.92
40 41 1.855360 GCTCCGACTTTGACGATGATC 59.145 52.381 0.00 0.00 0.00 2.92
41 42 1.478510 AGCTCCGACTTTGACGATGAT 59.521 47.619 0.00 0.00 0.00 2.45
42 43 0.888619 AGCTCCGACTTTGACGATGA 59.111 50.000 0.00 0.00 0.00 2.92
43 44 0.994995 CAGCTCCGACTTTGACGATG 59.005 55.000 0.00 0.00 0.00 3.84
44 45 0.603569 ACAGCTCCGACTTTGACGAT 59.396 50.000 0.00 0.00 0.00 3.73
45 46 0.039437 GACAGCTCCGACTTTGACGA 60.039 55.000 0.00 0.00 0.00 4.20
46 47 1.337817 CGACAGCTCCGACTTTGACG 61.338 60.000 0.00 0.00 0.00 4.35
47 48 1.009389 CCGACAGCTCCGACTTTGAC 61.009 60.000 6.61 0.00 0.00 3.18
48 49 1.289066 CCGACAGCTCCGACTTTGA 59.711 57.895 6.61 0.00 0.00 2.69
49 50 0.600255 AACCGACAGCTCCGACTTTG 60.600 55.000 6.61 0.00 0.00 2.77
50 51 0.600255 CAACCGACAGCTCCGACTTT 60.600 55.000 6.61 0.00 0.00 2.66
51 52 1.006102 CAACCGACAGCTCCGACTT 60.006 57.895 6.61 0.00 0.00 3.01
52 53 1.745320 AACAACCGACAGCTCCGACT 61.745 55.000 6.61 0.00 0.00 4.18
53 54 1.282930 GAACAACCGACAGCTCCGAC 61.283 60.000 6.61 0.00 0.00 4.79
54 55 1.006571 GAACAACCGACAGCTCCGA 60.007 57.895 6.61 0.00 0.00 4.55
55 56 1.300620 TGAACAACCGACAGCTCCG 60.301 57.895 0.00 0.00 0.00 4.63
56 57 1.557443 CGTGAACAACCGACAGCTCC 61.557 60.000 0.00 0.00 0.00 4.70
57 58 1.853319 CGTGAACAACCGACAGCTC 59.147 57.895 0.00 0.00 0.00 4.09
58 59 2.244651 GCGTGAACAACCGACAGCT 61.245 57.895 0.00 0.00 0.00 4.24
59 60 2.248431 GCGTGAACAACCGACAGC 59.752 61.111 0.00 0.00 0.00 4.40
60 61 2.235016 ACGCGTGAACAACCGACAG 61.235 57.895 12.93 0.00 0.00 3.51
61 62 2.202770 ACGCGTGAACAACCGACA 60.203 55.556 12.93 0.00 0.00 4.35
62 63 2.244382 CACGCGTGAACAACCGAC 59.756 61.111 34.93 0.00 0.00 4.79
63 64 2.202770 ACACGCGTGAACAACCGA 60.203 55.556 42.94 0.00 0.00 4.69
64 65 2.053465 CACACGCGTGAACAACCG 60.053 61.111 42.94 16.80 46.80 4.44
65 66 2.326550 CCACACGCGTGAACAACC 59.673 61.111 42.94 0.00 46.80 3.77
66 67 2.351888 GCCACACGCGTGAACAAC 60.352 61.111 42.94 23.13 46.80 3.32
67 68 3.578272 GGCCACACGCGTGAACAA 61.578 61.111 42.94 0.00 46.80 2.83
68 69 4.539083 AGGCCACACGCGTGAACA 62.539 61.111 42.94 0.00 46.80 3.18
69 70 3.236618 GAAGGCCACACGCGTGAAC 62.237 63.158 42.94 29.03 46.80 3.18
70 71 2.970324 GAAGGCCACACGCGTGAA 60.970 61.111 42.94 0.00 46.80 3.18
71 72 3.923864 AGAAGGCCACACGCGTGA 61.924 61.111 42.94 0.00 46.80 4.35
72 73 3.716006 CAGAAGGCCACACGCGTG 61.716 66.667 35.99 35.99 43.21 5.34
73 74 3.750373 AACAGAAGGCCACACGCGT 62.750 57.895 5.58 5.58 38.94 6.01
74 75 2.972505 AACAGAAGGCCACACGCG 60.973 61.111 5.01 3.53 38.94 6.01
75 76 2.639286 CAACAGAAGGCCACACGC 59.361 61.111 5.01 0.00 0.00 5.34
76 77 2.908073 GCCAACAGAAGGCCACACG 61.908 63.158 5.01 0.00 46.50 4.49
77 78 3.042560 GCCAACAGAAGGCCACAC 58.957 61.111 5.01 0.00 46.50 3.82
96 97 2.296752 CACAGAAAACCATGATGGCACA 59.703 45.455 12.25 0.00 42.67 4.57
97 98 2.927871 GCACAGAAAACCATGATGGCAC 60.928 50.000 12.25 0.60 42.67 5.01
98 99 1.273048 GCACAGAAAACCATGATGGCA 59.727 47.619 12.25 0.00 42.67 4.92
99 100 1.273048 TGCACAGAAAACCATGATGGC 59.727 47.619 12.25 0.00 42.67 4.40
100 101 2.673043 GCTGCACAGAAAACCATGATGG 60.673 50.000 10.53 10.53 45.02 3.51
101 102 2.230508 AGCTGCACAGAAAACCATGATG 59.769 45.455 1.02 0.00 0.00 3.07
102 103 2.230508 CAGCTGCACAGAAAACCATGAT 59.769 45.455 0.00 0.00 0.00 2.45
103 104 1.610038 CAGCTGCACAGAAAACCATGA 59.390 47.619 0.00 0.00 0.00 3.07
104 105 1.338973 ACAGCTGCACAGAAAACCATG 59.661 47.619 15.27 0.00 0.00 3.66
105 106 1.696063 ACAGCTGCACAGAAAACCAT 58.304 45.000 15.27 0.00 0.00 3.55
106 107 1.473258 AACAGCTGCACAGAAAACCA 58.527 45.000 15.27 0.00 0.00 3.67
107 108 2.195922 CAAACAGCTGCACAGAAAACC 58.804 47.619 15.27 0.00 0.00 3.27
108 109 2.879826 ACAAACAGCTGCACAGAAAAC 58.120 42.857 15.27 0.00 0.00 2.43
109 110 3.489059 GCTACAAACAGCTGCACAGAAAA 60.489 43.478 15.27 0.00 38.57 2.29
110 111 2.033299 GCTACAAACAGCTGCACAGAAA 59.967 45.455 15.27 0.00 38.57 2.52
111 112 1.603802 GCTACAAACAGCTGCACAGAA 59.396 47.619 15.27 0.00 38.57 3.02
112 113 1.229428 GCTACAAACAGCTGCACAGA 58.771 50.000 15.27 0.00 38.57 3.41
113 114 3.761481 GCTACAAACAGCTGCACAG 57.239 52.632 15.27 5.36 38.57 3.66
119 120 9.787232 CATGGGATCATAGAGCTACAAACAGCT 62.787 44.444 0.00 0.00 42.26 4.24
120 121 4.061596 GGGATCATAGAGCTACAAACAGC 58.938 47.826 0.00 0.00 42.12 4.40
121 122 5.282055 TGGGATCATAGAGCTACAAACAG 57.718 43.478 0.00 0.00 0.00 3.16
122 123 5.130975 ACATGGGATCATAGAGCTACAAACA 59.869 40.000 0.00 0.00 31.33 2.83
123 124 5.615289 ACATGGGATCATAGAGCTACAAAC 58.385 41.667 0.00 0.00 31.33 2.93
124 125 5.509670 CGACATGGGATCATAGAGCTACAAA 60.510 44.000 0.00 0.00 31.33 2.83
125 126 4.021981 CGACATGGGATCATAGAGCTACAA 60.022 45.833 0.00 0.00 31.33 2.41
126 127 3.507622 CGACATGGGATCATAGAGCTACA 59.492 47.826 0.00 0.00 31.33 2.74
127 128 3.119316 CCGACATGGGATCATAGAGCTAC 60.119 52.174 0.00 0.00 31.33 3.58
128 129 3.092301 CCGACATGGGATCATAGAGCTA 58.908 50.000 0.00 0.00 31.33 3.32
129 130 1.898472 CCGACATGGGATCATAGAGCT 59.102 52.381 0.00 0.00 31.33 4.09
130 131 1.620819 ACCGACATGGGATCATAGAGC 59.379 52.381 0.00 0.00 44.64 4.09
131 132 2.028658 CCACCGACATGGGATCATAGAG 60.029 54.545 0.00 0.00 44.64 2.43
132 133 1.970640 CCACCGACATGGGATCATAGA 59.029 52.381 0.00 0.00 44.64 1.98
133 134 1.609061 GCCACCGACATGGGATCATAG 60.609 57.143 0.00 0.00 44.64 2.23
134 135 0.396435 GCCACCGACATGGGATCATA 59.604 55.000 0.00 0.00 44.64 2.15
135 136 1.149174 GCCACCGACATGGGATCAT 59.851 57.895 0.00 0.00 44.64 2.45
136 137 2.589540 GCCACCGACATGGGATCA 59.410 61.111 0.00 0.00 44.64 2.92
137 138 2.203209 GGCCACCGACATGGGATC 60.203 66.667 0.00 0.00 44.64 3.36
138 139 3.014538 TGGCCACCGACATGGGAT 61.015 61.111 0.00 0.00 44.64 3.85
139 140 3.716195 CTGGCCACCGACATGGGA 61.716 66.667 0.00 0.00 44.64 4.37
140 141 4.802051 CCTGGCCACCGACATGGG 62.802 72.222 0.00 0.00 44.64 4.00
141 142 3.567579 AACCTGGCCACCGACATGG 62.568 63.158 0.00 1.37 46.41 3.66
142 143 2.034066 AACCTGGCCACCGACATG 59.966 61.111 0.00 0.00 0.00 3.21
143 144 2.034066 CAACCTGGCCACCGACAT 59.966 61.111 0.00 0.00 0.00 3.06
144 145 4.263572 CCAACCTGGCCACCGACA 62.264 66.667 0.00 0.00 0.00 4.35
172 173 2.205022 ACTCAACCCACATGACATGG 57.795 50.000 19.39 4.23 36.94 3.66
173 174 2.886523 ACAACTCAACCCACATGACATG 59.113 45.455 14.02 14.02 0.00 3.21
174 175 3.228188 ACAACTCAACCCACATGACAT 57.772 42.857 0.00 0.00 0.00 3.06
175 176 2.727123 ACAACTCAACCCACATGACA 57.273 45.000 0.00 0.00 0.00 3.58
176 177 3.370978 CGATACAACTCAACCCACATGAC 59.629 47.826 0.00 0.00 0.00 3.06
177 178 3.595173 CGATACAACTCAACCCACATGA 58.405 45.455 0.00 0.00 0.00 3.07
178 179 2.677836 CCGATACAACTCAACCCACATG 59.322 50.000 0.00 0.00 0.00 3.21
179 180 2.304761 ACCGATACAACTCAACCCACAT 59.695 45.455 0.00 0.00 0.00 3.21
180 181 1.695242 ACCGATACAACTCAACCCACA 59.305 47.619 0.00 0.00 0.00 4.17
181 182 2.467566 ACCGATACAACTCAACCCAC 57.532 50.000 0.00 0.00 0.00 4.61
182 183 3.495434 AAACCGATACAACTCAACCCA 57.505 42.857 0.00 0.00 0.00 4.51
183 184 4.142752 GCTAAAACCGATACAACTCAACCC 60.143 45.833 0.00 0.00 0.00 4.11
184 185 4.142752 GGCTAAAACCGATACAACTCAACC 60.143 45.833 0.00 0.00 0.00 3.77
185 186 4.142752 GGGCTAAAACCGATACAACTCAAC 60.143 45.833 0.00 0.00 0.00 3.18
186 187 4.004982 GGGCTAAAACCGATACAACTCAA 58.995 43.478 0.00 0.00 0.00 3.02
187 188 3.602483 GGGCTAAAACCGATACAACTCA 58.398 45.455 0.00 0.00 0.00 3.41
198 199 0.896479 TGGAAAGCCGGGCTAAAACC 60.896 55.000 24.16 21.21 38.25 3.27
199 200 1.134367 GATGGAAAGCCGGGCTAAAAC 59.866 52.381 24.16 13.42 38.25 2.43
200 201 1.272203 TGATGGAAAGCCGGGCTAAAA 60.272 47.619 24.16 9.02 38.25 1.52
201 202 0.329931 TGATGGAAAGCCGGGCTAAA 59.670 50.000 24.16 8.64 38.25 1.85
202 203 0.329931 TTGATGGAAAGCCGGGCTAA 59.670 50.000 24.16 8.09 38.25 3.09
203 204 0.550914 ATTGATGGAAAGCCGGGCTA 59.449 50.000 24.16 6.85 38.25 3.93
204 205 0.324645 AATTGATGGAAAGCCGGGCT 60.325 50.000 17.69 17.69 42.56 5.19
205 206 1.398692 TAATTGATGGAAAGCCGGGC 58.601 50.000 12.11 12.11 36.79 6.13
206 207 2.100749 GGTTAATTGATGGAAAGCCGGG 59.899 50.000 2.18 0.00 36.79 5.73
207 208 2.223479 CGGTTAATTGATGGAAAGCCGG 60.223 50.000 0.00 0.00 36.79 6.13
208 209 2.223479 CCGGTTAATTGATGGAAAGCCG 60.223 50.000 0.00 0.00 36.79 5.52
209 210 2.100749 CCCGGTTAATTGATGGAAAGCC 59.899 50.000 0.00 0.00 0.00 4.35
210 211 2.481276 GCCCGGTTAATTGATGGAAAGC 60.481 50.000 0.00 0.00 0.00 3.51
211 212 2.757868 TGCCCGGTTAATTGATGGAAAG 59.242 45.455 0.00 0.00 0.00 2.62
212 213 2.808919 TGCCCGGTTAATTGATGGAAA 58.191 42.857 0.00 0.00 0.00 3.13
213 214 2.516227 TGCCCGGTTAATTGATGGAA 57.484 45.000 0.00 0.00 0.00 3.53
214 215 2.291282 ACTTGCCCGGTTAATTGATGGA 60.291 45.455 0.00 0.00 0.00 3.41
215 216 2.099098 GACTTGCCCGGTTAATTGATGG 59.901 50.000 0.00 0.00 0.00 3.51
216 217 3.016736 AGACTTGCCCGGTTAATTGATG 58.983 45.455 0.00 0.00 0.00 3.07
217 218 3.054361 AGAGACTTGCCCGGTTAATTGAT 60.054 43.478 0.00 0.00 0.00 2.57
218 219 2.304761 AGAGACTTGCCCGGTTAATTGA 59.695 45.455 0.00 0.00 0.00 2.57
219 220 2.711542 AGAGACTTGCCCGGTTAATTG 58.288 47.619 0.00 0.00 0.00 2.32
220 221 3.009143 AGAAGAGACTTGCCCGGTTAATT 59.991 43.478 0.00 0.00 0.00 1.40
221 222 2.572104 AGAAGAGACTTGCCCGGTTAAT 59.428 45.455 0.00 0.00 0.00 1.40
222 223 1.975680 AGAAGAGACTTGCCCGGTTAA 59.024 47.619 0.00 0.00 0.00 2.01
223 224 1.640917 AGAAGAGACTTGCCCGGTTA 58.359 50.000 0.00 0.00 0.00 2.85
224 225 0.765510 AAGAAGAGACTTGCCCGGTT 59.234 50.000 0.00 0.00 0.00 4.44
225 226 0.321996 GAAGAAGAGACTTGCCCGGT 59.678 55.000 0.00 0.00 0.00 5.28
226 227 0.610687 AGAAGAAGAGACTTGCCCGG 59.389 55.000 0.00 0.00 0.00 5.73
227 228 2.464157 AAGAAGAAGAGACTTGCCCG 57.536 50.000 0.00 0.00 0.00 6.13
228 229 5.491982 TGATTAAGAAGAAGAGACTTGCCC 58.508 41.667 0.00 0.00 0.00 5.36
229 230 7.335422 TCATTGATTAAGAAGAAGAGACTTGCC 59.665 37.037 0.00 0.00 0.00 4.52
230 231 8.261492 TCATTGATTAAGAAGAAGAGACTTGC 57.739 34.615 0.00 0.00 0.00 4.01
236 237 9.298774 GCCATTTTCATTGATTAAGAAGAAGAG 57.701 33.333 0.00 0.00 0.00 2.85
237 238 8.805175 TGCCATTTTCATTGATTAAGAAGAAGA 58.195 29.630 0.00 0.00 0.00 2.87
238 239 8.991243 TGCCATTTTCATTGATTAAGAAGAAG 57.009 30.769 0.00 0.00 0.00 2.85
239 240 9.775854 TTTGCCATTTTCATTGATTAAGAAGAA 57.224 25.926 0.00 0.00 0.00 2.52
240 241 9.947433 ATTTGCCATTTTCATTGATTAAGAAGA 57.053 25.926 0.00 0.00 0.00 2.87
285 286 6.891908 ACATGCTCTGGGTGTATCTTATTTTT 59.108 34.615 0.00 0.00 0.00 1.94
286 287 6.426587 ACATGCTCTGGGTGTATCTTATTTT 58.573 36.000 0.00 0.00 0.00 1.82
287 288 6.006275 ACATGCTCTGGGTGTATCTTATTT 57.994 37.500 0.00 0.00 0.00 1.40
288 289 5.636903 ACATGCTCTGGGTGTATCTTATT 57.363 39.130 0.00 0.00 0.00 1.40
289 290 5.841237 AGTACATGCTCTGGGTGTATCTTAT 59.159 40.000 0.00 0.00 31.71 1.73
290 291 5.208890 AGTACATGCTCTGGGTGTATCTTA 58.791 41.667 0.00 0.00 31.71 2.10
291 292 4.033709 AGTACATGCTCTGGGTGTATCTT 58.966 43.478 0.00 0.00 31.71 2.40
292 293 3.647636 AGTACATGCTCTGGGTGTATCT 58.352 45.455 0.00 0.00 31.71 1.98
293 294 4.100189 AGAAGTACATGCTCTGGGTGTATC 59.900 45.833 0.00 0.00 31.71 2.24
294 295 4.033709 AGAAGTACATGCTCTGGGTGTAT 58.966 43.478 0.00 0.00 31.71 2.29
295 296 3.441101 AGAAGTACATGCTCTGGGTGTA 58.559 45.455 0.00 0.00 0.00 2.90
296 297 2.234908 GAGAAGTACATGCTCTGGGTGT 59.765 50.000 0.00 0.00 0.00 4.16
297 298 2.499289 AGAGAAGTACATGCTCTGGGTG 59.501 50.000 10.25 0.00 37.60 4.61
298 299 2.826488 AGAGAAGTACATGCTCTGGGT 58.174 47.619 10.25 0.00 37.60 4.51
299 300 5.344743 TTTAGAGAAGTACATGCTCTGGG 57.655 43.478 17.32 0.00 39.23 4.45
323 324 9.068008 CGTGCGGTTTTTATAATTTACTGATTT 57.932 29.630 5.57 0.00 0.00 2.17
324 325 8.238631 ACGTGCGGTTTTTATAATTTACTGATT 58.761 29.630 0.00 0.00 0.00 2.57
325 326 7.694784 CACGTGCGGTTTTTATAATTTACTGAT 59.305 33.333 0.82 0.00 0.00 2.90
326 327 7.016466 CACGTGCGGTTTTTATAATTTACTGA 58.984 34.615 0.82 0.00 0.00 3.41
327 328 6.237097 GCACGTGCGGTTTTTATAATTTACTG 60.237 38.462 26.77 0.00 0.00 2.74
328 329 5.796437 GCACGTGCGGTTTTTATAATTTACT 59.204 36.000 26.77 0.00 0.00 2.24
329 330 5.568296 TGCACGTGCGGTTTTTATAATTTAC 59.432 36.000 33.22 3.21 45.83 2.01
330 331 5.696822 TGCACGTGCGGTTTTTATAATTTA 58.303 33.333 33.22 8.97 45.83 1.40
331 332 4.547532 TGCACGTGCGGTTTTTATAATTT 58.452 34.783 33.22 0.00 45.83 1.82
332 333 4.162096 TGCACGTGCGGTTTTTATAATT 57.838 36.364 33.22 0.00 45.83 1.40
333 334 3.833545 TGCACGTGCGGTTTTTATAAT 57.166 38.095 33.22 0.00 45.83 1.28
334 335 3.620929 TTGCACGTGCGGTTTTTATAA 57.379 38.095 33.22 17.00 45.83 0.98
335 336 3.620929 TTTGCACGTGCGGTTTTTATA 57.379 38.095 33.22 11.66 45.83 0.98
336 337 2.493713 TTTGCACGTGCGGTTTTTAT 57.506 40.000 33.22 0.00 45.83 1.40
337 338 2.120232 CATTTGCACGTGCGGTTTTTA 58.880 42.857 33.22 13.22 45.83 1.52
338 339 0.926846 CATTTGCACGTGCGGTTTTT 59.073 45.000 33.22 13.40 45.83 1.94
339 340 0.101399 TCATTTGCACGTGCGGTTTT 59.899 45.000 33.22 14.80 45.83 2.43
340 341 0.317770 CTCATTTGCACGTGCGGTTT 60.318 50.000 33.22 16.56 45.83 3.27
341 342 1.282570 CTCATTTGCACGTGCGGTT 59.717 52.632 33.22 18.36 45.83 4.44
342 343 1.841663 GACTCATTTGCACGTGCGGT 61.842 55.000 33.22 22.83 45.83 5.68
343 344 1.154413 GACTCATTTGCACGTGCGG 60.154 57.895 33.22 22.38 45.83 5.69
344 345 0.041400 TTGACTCATTTGCACGTGCG 60.041 50.000 33.22 20.87 45.83 5.34
345 346 1.002468 ACTTGACTCATTTGCACGTGC 60.002 47.619 33.11 33.11 42.50 5.34
346 347 4.083855 ACATACTTGACTCATTTGCACGTG 60.084 41.667 12.28 12.28 0.00 4.49
347 348 4.065088 ACATACTTGACTCATTTGCACGT 58.935 39.130 0.00 0.00 0.00 4.49
348 349 4.668576 ACATACTTGACTCATTTGCACG 57.331 40.909 0.00 0.00 0.00 5.34
349 350 5.117592 GCAAACATACTTGACTCATTTGCAC 59.882 40.000 15.78 0.00 46.03 4.57
350 351 5.221880 GCAAACATACTTGACTCATTTGCA 58.778 37.500 15.78 0.00 46.03 4.08
351 352 5.117592 GTGCAAACATACTTGACTCATTTGC 59.882 40.000 14.54 14.54 46.61 3.68
352 353 6.207928 TGTGCAAACATACTTGACTCATTTG 58.792 36.000 0.00 0.00 0.00 2.32
353 354 6.389830 TGTGCAAACATACTTGACTCATTT 57.610 33.333 0.00 0.00 0.00 2.32
354 355 6.579666 ATGTGCAAACATACTTGACTCATT 57.420 33.333 0.00 0.00 0.00 2.57
355 356 7.686438 TTATGTGCAAACATACTTGACTCAT 57.314 32.000 0.00 0.00 32.88 2.90
356 357 7.503521 TTTATGTGCAAACATACTTGACTCA 57.496 32.000 0.00 0.00 32.88 3.41
357 358 8.795786 TTTTTATGTGCAAACATACTTGACTC 57.204 30.769 0.00 0.00 32.88 3.36
358 359 9.762933 AATTTTTATGTGCAAACATACTTGACT 57.237 25.926 0.00 0.00 32.88 3.41
402 403 6.309251 GTCACCTTTTTCACGAATCACAAAAA 59.691 34.615 0.00 0.00 0.00 1.94
403 404 5.802956 GTCACCTTTTTCACGAATCACAAAA 59.197 36.000 0.00 0.00 0.00 2.44
404 405 5.124776 AGTCACCTTTTTCACGAATCACAAA 59.875 36.000 0.00 0.00 0.00 2.83
405 406 4.638421 AGTCACCTTTTTCACGAATCACAA 59.362 37.500 0.00 0.00 0.00 3.33
406 407 4.196193 AGTCACCTTTTTCACGAATCACA 58.804 39.130 0.00 0.00 0.00 3.58
407 408 4.511826 AGAGTCACCTTTTTCACGAATCAC 59.488 41.667 0.00 0.00 0.00 3.06
408 409 4.703897 AGAGTCACCTTTTTCACGAATCA 58.296 39.130 0.00 0.00 0.00 2.57
409 410 5.007724 ACAAGAGTCACCTTTTTCACGAATC 59.992 40.000 0.00 0.00 0.00 2.52
410 411 4.881850 ACAAGAGTCACCTTTTTCACGAAT 59.118 37.500 0.00 0.00 0.00 3.34
411 412 4.258543 ACAAGAGTCACCTTTTTCACGAA 58.741 39.130 0.00 0.00 0.00 3.85
412 413 3.869065 ACAAGAGTCACCTTTTTCACGA 58.131 40.909 0.00 0.00 0.00 4.35
413 414 4.616181 AACAAGAGTCACCTTTTTCACG 57.384 40.909 0.00 0.00 0.00 4.35
482 486 6.546403 GTGTAGATCTTAGAGTGGGTCATGTA 59.454 42.308 0.00 0.00 0.00 2.29
488 492 4.024670 GGTGTGTAGATCTTAGAGTGGGT 58.975 47.826 0.00 0.00 0.00 4.51
516 520 5.177327 TGCAATTTTGAATTTTTCCGAGAGC 59.823 36.000 0.00 0.00 0.00 4.09
519 523 6.200665 TGACTGCAATTTTGAATTTTTCCGAG 59.799 34.615 0.00 0.00 0.00 4.63
537 541 9.814899 TTTTAGAAAAATTCAAAGATGACTGCA 57.185 25.926 0.00 0.00 34.61 4.41
641 649 6.901615 TTATAAATGTCTTGGAAGGGGAGA 57.098 37.500 0.00 0.00 0.00 3.71
642 650 7.119387 AGTTTATAAATGTCTTGGAAGGGGAG 58.881 38.462 0.31 0.00 0.00 4.30
696 710 1.602237 CATTACACCCGGCCTCTGT 59.398 57.895 0.00 1.25 0.00 3.41
779 794 7.264947 CCTTTTTGAGGGAAATGCGTTTATAT 58.735 34.615 3.32 0.00 42.26 0.86
1010 1292 1.305297 TGGGTGAGCCTCGACATCT 60.305 57.895 1.06 0.00 34.45 2.90
1872 2256 3.485463 TCCCAGTTATAAATCCCGCTG 57.515 47.619 0.00 0.00 0.00 5.18
2052 2448 4.038282 TGATCCAAATCATATGCCAACAGC 59.962 41.667 0.00 0.00 36.98 4.40
2175 2603 1.133025 CGGAACATTCATCAACTGGGC 59.867 52.381 0.00 0.00 0.00 5.36
2214 2644 0.107312 ACTGAGCACCTCATCCATGC 60.107 55.000 0.00 0.00 39.92 4.06
2534 3002 2.629137 TGCACATCAAAAGGCACAGAAT 59.371 40.909 0.00 0.00 0.00 2.40
2654 3901 5.871524 CCTAGATAGAATTGTATGTGCGCAT 59.128 40.000 15.91 18.22 39.03 4.73
2723 3978 8.742777 ACACATATGCAAACTTCTATGAACAAT 58.257 29.630 1.58 0.00 0.00 2.71
2724 3979 8.109705 ACACATATGCAAACTTCTATGAACAA 57.890 30.769 1.58 0.00 0.00 2.83
2726 3981 8.664798 TGTACACATATGCAAACTTCTATGAAC 58.335 33.333 1.58 5.65 0.00 3.18
2787 4043 6.618287 TTTCTGACACTACAATGACCTTTG 57.382 37.500 0.00 0.00 0.00 2.77
2797 4053 9.755804 GAGATTATGATCATTTCTGACACTACA 57.244 33.333 14.65 0.00 34.60 2.74
2798 4054 9.979578 AGAGATTATGATCATTTCTGACACTAC 57.020 33.333 14.65 3.80 34.60 2.73
2841 4100 5.126779 AGAAGAAAGAACAGACCAGGAAAC 58.873 41.667 0.00 0.00 0.00 2.78
2849 4108 8.608844 TGAATCCTTTAGAAGAAAGAACAGAC 57.391 34.615 0.00 0.00 0.00 3.51
2892 4151 9.612620 GGATGCGGAAAATTAAACTAGATTATG 57.387 33.333 0.00 0.00 0.00 1.90
2895 4154 7.639113 TGGATGCGGAAAATTAAACTAGATT 57.361 32.000 0.00 0.00 0.00 2.40
2925 4184 1.268625 GATGGTTTCCCAACACCGTTC 59.731 52.381 0.00 0.00 46.04 3.95
2929 4188 6.436218 AGTTAAATAGATGGTTTCCCAACACC 59.564 38.462 0.00 0.00 46.04 4.16
2970 4230 7.978099 AGGGCTATTACTTTCATCCAAATTT 57.022 32.000 0.00 0.00 0.00 1.82
2981 4242 6.673583 AGCTTTGGATAAGGGCTATTACTTT 58.326 36.000 0.00 0.00 0.00 2.66
2984 4245 6.961360 AAAGCTTTGGATAAGGGCTATTAC 57.039 37.500 11.80 0.00 32.64 1.89
2990 4251 5.661056 AGTAAAAAGCTTTGGATAAGGGC 57.339 39.130 13.54 0.00 0.00 5.19
3066 4328 8.474831 GGTTAGCCATTCAGGTAAAACATAAAT 58.525 33.333 0.00 0.00 40.61 1.40
3067 4329 7.451877 TGGTTAGCCATTCAGGTAAAACATAAA 59.548 33.333 0.00 0.00 40.46 1.40
3068 4330 6.948886 TGGTTAGCCATTCAGGTAAAACATAA 59.051 34.615 0.00 0.00 40.46 1.90
3069 4331 6.486056 TGGTTAGCCATTCAGGTAAAACATA 58.514 36.000 0.00 0.00 40.46 2.29
3070 4332 5.329399 TGGTTAGCCATTCAGGTAAAACAT 58.671 37.500 0.00 0.00 40.46 2.71
3071 4333 4.730966 TGGTTAGCCATTCAGGTAAAACA 58.269 39.130 0.00 0.00 40.46 2.83
3072 4334 5.475564 TCTTGGTTAGCCATTCAGGTAAAAC 59.524 40.000 0.00 0.00 45.56 2.43
3073 4335 5.636123 TCTTGGTTAGCCATTCAGGTAAAA 58.364 37.500 0.00 0.00 45.56 1.52
3074 4336 5.222048 ACTCTTGGTTAGCCATTCAGGTAAA 60.222 40.000 0.00 0.00 45.56 2.01
3075 4337 4.288626 ACTCTTGGTTAGCCATTCAGGTAA 59.711 41.667 0.00 0.00 45.56 2.85
3076 4338 3.844211 ACTCTTGGTTAGCCATTCAGGTA 59.156 43.478 0.00 0.00 45.56 3.08
3077 4339 2.644798 ACTCTTGGTTAGCCATTCAGGT 59.355 45.455 0.00 0.00 45.56 4.00
3078 4340 3.356529 ACTCTTGGTTAGCCATTCAGG 57.643 47.619 0.00 0.00 45.56 3.86
3079 4341 3.119708 GCAACTCTTGGTTAGCCATTCAG 60.120 47.826 0.00 0.00 45.56 3.02
3080 4342 2.819608 GCAACTCTTGGTTAGCCATTCA 59.180 45.455 0.00 0.00 45.56 2.57
3081 4343 3.084786 AGCAACTCTTGGTTAGCCATTC 58.915 45.455 0.00 0.00 45.56 2.67
3082 4344 3.160679 AGCAACTCTTGGTTAGCCATT 57.839 42.857 0.00 0.00 45.56 3.16
3083 4345 2.887151 AGCAACTCTTGGTTAGCCAT 57.113 45.000 0.00 0.00 45.56 4.40
3090 4352 5.570320 ACCATAACATAAGCAACTCTTGGT 58.430 37.500 0.00 0.00 44.43 3.67
3091 4353 6.515272 AACCATAACATAAGCAACTCTTGG 57.485 37.500 0.00 0.00 36.25 3.61
3092 4354 8.816640 AAAAACCATAACATAAGCAACTCTTG 57.183 30.769 0.00 0.00 36.25 3.02
3114 4376 8.100791 ACCTAGATAGAACTGTATGTGCAAAAA 58.899 33.333 0.00 0.00 0.00 1.94
3115 4377 7.549134 CACCTAGATAGAACTGTATGTGCAAAA 59.451 37.037 0.00 0.00 0.00 2.44
3116 4378 7.041721 CACCTAGATAGAACTGTATGTGCAAA 58.958 38.462 0.00 0.00 0.00 3.68
3117 4379 6.154534 ACACCTAGATAGAACTGTATGTGCAA 59.845 38.462 0.00 0.00 0.00 4.08
3118 4380 5.656859 ACACCTAGATAGAACTGTATGTGCA 59.343 40.000 0.00 0.00 0.00 4.57
3119 4381 6.150396 ACACCTAGATAGAACTGTATGTGC 57.850 41.667 0.00 0.00 0.00 4.57
3120 4382 7.010552 GCAAACACCTAGATAGAACTGTATGTG 59.989 40.741 0.00 0.00 0.00 3.21
3121 4383 7.042335 GCAAACACCTAGATAGAACTGTATGT 58.958 38.462 0.00 0.00 0.00 2.29
3122 4384 7.041721 TGCAAACACCTAGATAGAACTGTATG 58.958 38.462 0.00 0.00 0.00 2.39
3123 4385 7.182817 TGCAAACACCTAGATAGAACTGTAT 57.817 36.000 0.00 0.00 0.00 2.29
3124 4386 6.599356 TGCAAACACCTAGATAGAACTGTA 57.401 37.500 0.00 0.00 0.00 2.74
3125 4387 5.483685 TGCAAACACCTAGATAGAACTGT 57.516 39.130 0.00 0.00 0.00 3.55
3126 4388 5.352569 CCTTGCAAACACCTAGATAGAACTG 59.647 44.000 0.00 0.00 0.00 3.16
3127 4389 5.013183 ACCTTGCAAACACCTAGATAGAACT 59.987 40.000 0.00 0.00 0.00 3.01
3128 4390 5.246307 ACCTTGCAAACACCTAGATAGAAC 58.754 41.667 0.00 0.00 0.00 3.01
3129 4391 5.499004 ACCTTGCAAACACCTAGATAGAA 57.501 39.130 0.00 0.00 0.00 2.10
3130 4392 5.499004 AACCTTGCAAACACCTAGATAGA 57.501 39.130 0.00 0.00 0.00 1.98
3131 4393 6.431234 AGAAAACCTTGCAAACACCTAGATAG 59.569 38.462 0.00 0.00 0.00 2.08
3132 4394 6.303839 AGAAAACCTTGCAAACACCTAGATA 58.696 36.000 0.00 0.00 0.00 1.98
3133 4395 5.140454 AGAAAACCTTGCAAACACCTAGAT 58.860 37.500 0.00 0.00 0.00 1.98
3134 4396 4.532834 AGAAAACCTTGCAAACACCTAGA 58.467 39.130 0.00 0.00 0.00 2.43
3135 4397 4.918810 AGAAAACCTTGCAAACACCTAG 57.081 40.909 0.00 0.00 0.00 3.02
3136 4398 5.004922 CAAGAAAACCTTGCAAACACCTA 57.995 39.130 0.00 0.00 44.90 3.08
3137 4399 3.860641 CAAGAAAACCTTGCAAACACCT 58.139 40.909 0.00 0.00 44.90 4.00
3147 4409 5.357742 AACAAAGATGCCAAGAAAACCTT 57.642 34.783 0.00 0.00 34.91 3.50
3148 4410 5.357742 AAACAAAGATGCCAAGAAAACCT 57.642 34.783 0.00 0.00 0.00 3.50
3149 4411 6.435430 AAAAACAAAGATGCCAAGAAAACC 57.565 33.333 0.00 0.00 0.00 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.