Multiple sequence alignment - TraesCS7A01G486900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G486900 chr7A 100.000 2565 0 0 1 2565 677705795 677708359 0.000000e+00 4737.0
1 TraesCS7A01G486900 chr7A 100.000 28 0 0 2538 2565 724060556 724060529 5.000000e-03 52.8
2 TraesCS7A01G486900 chr7A 100.000 28 0 0 2538 2565 735021154 735021127 5.000000e-03 52.8
3 TraesCS7A01G486900 chr7B 85.012 1241 103 38 1 1195 656524175 656525378 0.000000e+00 1184.0
4 TraesCS7A01G486900 chr7B 89.079 467 39 9 2081 2540 656526228 656526689 1.030000e-158 569.0
5 TraesCS7A01G486900 chr7B 86.828 372 39 6 1288 1652 656525410 656525778 8.540000e-110 407.0
6 TraesCS7A01G486900 chr7B 90.086 232 22 1 1670 1901 656525840 656526070 1.490000e-77 300.0
7 TraesCS7A01G486900 chr7B 100.000 29 0 0 2537 2565 664554785 664554813 1.000000e-03 54.7
8 TraesCS7A01G486900 chr7D 89.024 246 18 6 1396 1632 586498388 586498633 1.930000e-76 296.0
9 TraesCS7A01G486900 chr7D 88.492 252 19 3 1670 1911 586498733 586498984 1.930000e-76 296.0
10 TraesCS7A01G486900 chr7D 83.803 142 13 4 1282 1413 586498230 586498371 2.680000e-25 126.0
11 TraesCS7A01G486900 chr2B 100.000 29 0 0 2537 2565 49462248 49462276 1.000000e-03 54.7
12 TraesCS7A01G486900 chr2B 96.875 32 0 1 2535 2565 261600104 261600135 5.000000e-03 52.8
13 TraesCS7A01G486900 chr1D 100.000 29 0 0 2537 2565 470659116 470659144 1.000000e-03 54.7
14 TraesCS7A01G486900 chrUn 94.286 35 1 1 2532 2565 102766569 102766535 5.000000e-03 52.8
15 TraesCS7A01G486900 chrUn 100.000 28 0 0 2538 2565 346066635 346066662 5.000000e-03 52.8
16 TraesCS7A01G486900 chr1A 92.105 38 1 2 2530 2565 63703763 63703800 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G486900 chr7A 677705795 677708359 2564 False 4737.000000 4737 100.000000 1 2565 1 chr7A.!!$F1 2564
1 TraesCS7A01G486900 chr7B 656524175 656526689 2514 False 615.000000 1184 87.751250 1 2540 4 chr7B.!!$F2 2539
2 TraesCS7A01G486900 chr7D 586498230 586498984 754 False 239.333333 296 87.106333 1282 1911 3 chr7D.!!$F1 629

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
765 812 0.521735 GTAAAAAGCAGACTGGCGGG 59.478 55.0 4.26 0.0 39.27 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1926 2101 0.033208 TGCTTAGGGGGAAATGGCAG 60.033 55.0 0.0 0.0 0.0 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 1.102978 GCGTGCATTAGGGTTTGGAT 58.897 50.000 0.00 0.00 0.00 3.41
34 35 1.405105 CGTGCATTAGGGTTTGGATGG 59.595 52.381 0.00 0.00 0.00 3.51
39 40 1.988539 TTAGGGTTTGGATGGGGCTA 58.011 50.000 0.00 0.00 0.00 3.93
40 41 1.218844 TAGGGTTTGGATGGGGCTAC 58.781 55.000 0.00 0.00 0.00 3.58
55 56 2.278854 GGCTACGGTGCGGTTTTATAA 58.721 47.619 0.00 0.00 0.00 0.98
56 57 2.030823 GGCTACGGTGCGGTTTTATAAC 59.969 50.000 0.00 0.00 0.00 1.89
67 68 2.294979 GTTTTATAACGGCAGGGGGAG 58.705 52.381 0.00 0.00 0.00 4.30
76 77 2.529744 GCAGGGGGAGTGGTCAGTT 61.530 63.158 0.00 0.00 0.00 3.16
77 78 1.376466 CAGGGGGAGTGGTCAGTTG 59.624 63.158 0.00 0.00 0.00 3.16
81 82 2.358737 GGAGTGGTCAGTTGGGCG 60.359 66.667 0.00 0.00 0.00 6.13
98 99 3.357079 GGCACGCTGGTGGTTGAG 61.357 66.667 0.00 0.00 44.54 3.02
115 116 6.171921 TGGTTGAGCCATTATTTTTCATTGG 58.828 36.000 0.00 0.00 43.61 3.16
122 123 7.333323 AGCCATTATTTTTCATTGGGAGAAAG 58.667 34.615 0.00 0.00 36.45 2.62
123 124 6.539826 GCCATTATTTTTCATTGGGAGAAAGG 59.460 38.462 0.00 0.00 36.45 3.11
142 143 5.813965 AAGGAAAGAGGATATTTGGGGAA 57.186 39.130 0.00 0.00 0.00 3.97
150 151 4.369872 AGGATATTTGGGGAAAAATGCCA 58.630 39.130 0.00 0.00 32.25 4.92
199 223 4.859245 GCAAACTTTTGAGCAGTTATAGCC 59.141 41.667 5.87 0.00 40.55 3.93
206 230 3.856900 TGAGCAGTTATAGCCATAGGGA 58.143 45.455 0.00 0.00 35.59 4.20
222 246 2.078611 AGGGAAATGGTTAGTTGGGGT 58.921 47.619 0.00 0.00 0.00 4.95
262 286 5.185249 GGAAGTTAAGGAAATTGGAGGGAAC 59.815 44.000 0.00 0.00 0.00 3.62
265 289 6.010850 AGTTAAGGAAATTGGAGGGAACTTC 58.989 40.000 0.00 0.00 44.43 3.01
274 309 4.380843 TGGAGGGAACTTCAAAGCATAA 57.619 40.909 0.00 0.00 45.24 1.90
286 321 9.771915 AACTTCAAAGCATAATTGTTTGTTTTG 57.228 25.926 14.97 14.97 42.12 2.44
298 334 4.211920 TGTTTGTTTTGGGACCCTCTTAG 58.788 43.478 13.00 0.00 0.00 2.18
336 372 3.458118 TGGGGAGGATGACATTTACGAAT 59.542 43.478 0.00 0.00 0.00 3.34
347 383 9.720667 GATGACATTTACGAATGATTTTCATGA 57.279 29.630 6.17 0.00 44.37 3.07
436 472 4.637977 ACAATTTTGTTGAAAAACGGCCAT 59.362 33.333 2.24 0.00 38.47 4.40
495 531 4.541779 CAAACGTTTGCCAGTTAGCATTA 58.458 39.130 26.55 0.00 43.64 1.90
525 561 3.865446 TGTGTGCACAAGATGATAGAGG 58.135 45.455 23.59 0.00 38.56 3.69
527 563 4.466015 TGTGTGCACAAGATGATAGAGGTA 59.534 41.667 23.59 0.00 38.56 3.08
528 564 5.046529 GTGTGCACAAGATGATAGAGGTAG 58.953 45.833 23.59 0.00 0.00 3.18
529 565 4.711846 TGTGCACAAGATGATAGAGGTAGT 59.288 41.667 19.28 0.00 0.00 2.73
530 566 5.187772 TGTGCACAAGATGATAGAGGTAGTT 59.812 40.000 19.28 0.00 0.00 2.24
531 567 6.109359 GTGCACAAGATGATAGAGGTAGTTT 58.891 40.000 13.17 0.00 0.00 2.66
532 568 6.595716 GTGCACAAGATGATAGAGGTAGTTTT 59.404 38.462 13.17 0.00 0.00 2.43
533 569 6.595326 TGCACAAGATGATAGAGGTAGTTTTG 59.405 38.462 0.00 0.00 0.00 2.44
534 570 6.595716 GCACAAGATGATAGAGGTAGTTTTGT 59.404 38.462 0.00 0.00 0.00 2.83
535 571 7.413438 GCACAAGATGATAGAGGTAGTTTTGTG 60.413 40.741 0.00 0.00 42.53 3.33
536 572 7.604164 CACAAGATGATAGAGGTAGTTTTGTGT 59.396 37.037 0.00 0.00 37.78 3.72
537 573 7.604164 ACAAGATGATAGAGGTAGTTTTGTGTG 59.396 37.037 0.00 0.00 0.00 3.82
538 574 7.246171 AGATGATAGAGGTAGTTTTGTGTGT 57.754 36.000 0.00 0.00 0.00 3.72
539 575 7.099764 AGATGATAGAGGTAGTTTTGTGTGTG 58.900 38.462 0.00 0.00 0.00 3.82
540 576 6.169557 TGATAGAGGTAGTTTTGTGTGTGT 57.830 37.500 0.00 0.00 0.00 3.72
541 577 5.989168 TGATAGAGGTAGTTTTGTGTGTGTG 59.011 40.000 0.00 0.00 0.00 3.82
542 578 4.216411 AGAGGTAGTTTTGTGTGTGTGT 57.784 40.909 0.00 0.00 0.00 3.72
543 579 3.938963 AGAGGTAGTTTTGTGTGTGTGTG 59.061 43.478 0.00 0.00 0.00 3.82
544 580 3.681593 AGGTAGTTTTGTGTGTGTGTGT 58.318 40.909 0.00 0.00 0.00 3.72
545 581 3.438781 AGGTAGTTTTGTGTGTGTGTGTG 59.561 43.478 0.00 0.00 0.00 3.82
546 582 3.189702 GGTAGTTTTGTGTGTGTGTGTGT 59.810 43.478 0.00 0.00 0.00 3.72
547 583 3.281341 AGTTTTGTGTGTGTGTGTGTG 57.719 42.857 0.00 0.00 0.00 3.82
548 584 2.621055 AGTTTTGTGTGTGTGTGTGTGT 59.379 40.909 0.00 0.00 0.00 3.72
549 585 2.695613 TTTGTGTGTGTGTGTGTGTG 57.304 45.000 0.00 0.00 0.00 3.82
550 586 1.598882 TTGTGTGTGTGTGTGTGTGT 58.401 45.000 0.00 0.00 0.00 3.72
551 587 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
552 588 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
553 589 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
554 590 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
555 591 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
577 613 3.077359 TGTGTGTGTGTGTGTGATTTCA 58.923 40.909 0.00 0.00 0.00 2.69
593 636 9.309516 GTGTGATTTCAGCAATATTTTCATGAT 57.690 29.630 0.00 0.00 0.00 2.45
625 668 6.094061 GGAGAATTCGTTTCGGATCCTATAG 58.906 44.000 10.75 0.00 39.46 1.31
630 673 4.365723 TCGTTTCGGATCCTATAGTTTGC 58.634 43.478 10.75 0.00 0.00 3.68
648 691 1.873165 CGGACAAACATTGGACCCG 59.127 57.895 0.00 0.00 36.49 5.28
689 732 2.387757 TCTTTGGAAAGCAAGCAACCT 58.612 42.857 0.00 0.00 35.99 3.50
702 745 2.840296 GCAACCTGCTATCAGAAAGC 57.160 50.000 0.00 0.00 42.95 3.51
703 746 2.363683 GCAACCTGCTATCAGAAAGCT 58.636 47.619 0.00 0.00 42.95 3.74
712 755 4.050553 GCTATCAGAAAGCTAGCTCTGTG 58.949 47.826 25.14 18.59 38.58 3.66
754 801 4.209112 GCGTGTGAGTTACAGTAAAAAGC 58.791 43.478 0.00 0.00 40.69 3.51
759 806 6.258068 GTGTGAGTTACAGTAAAAAGCAGACT 59.742 38.462 0.00 0.00 40.69 3.24
765 812 0.521735 GTAAAAAGCAGACTGGCGGG 59.478 55.000 4.26 0.00 39.27 6.13
783 830 4.201980 GGCGGGAGTAATCCAATTTTACAC 60.202 45.833 12.01 0.00 33.02 2.90
788 835 6.209788 GGGAGTAATCCAATTTTACACAACCA 59.790 38.462 12.01 0.00 33.02 3.67
789 836 7.088272 GGAGTAATCCAATTTTACACAACCAC 58.912 38.462 3.85 0.00 33.02 4.16
790 837 6.674066 AGTAATCCAATTTTACACAACCACG 58.326 36.000 2.30 0.00 33.02 4.94
791 838 5.523438 AATCCAATTTTACACAACCACGT 57.477 34.783 0.00 0.00 0.00 4.49
805 852 1.342174 ACCACGTACGTCCACATCTTT 59.658 47.619 19.94 0.00 0.00 2.52
832 879 8.681486 TCAGTGGATCCAATAAATACATGAAG 57.319 34.615 18.20 0.00 0.00 3.02
833 880 8.493607 TCAGTGGATCCAATAAATACATGAAGA 58.506 33.333 18.20 0.87 0.00 2.87
834 881 9.293404 CAGTGGATCCAATAAATACATGAAGAT 57.707 33.333 18.20 0.00 0.00 2.40
835 882 9.293404 AGTGGATCCAATAAATACATGAAGATG 57.707 33.333 18.20 0.00 35.49 2.90
836 883 9.288576 GTGGATCCAATAAATACATGAAGATGA 57.711 33.333 18.20 0.00 33.36 2.92
840 887 8.114331 TCCAATAAATACATGAAGATGATGCC 57.886 34.615 0.00 0.00 33.36 4.40
842 889 8.361889 CCAATAAATACATGAAGATGATGCCAA 58.638 33.333 0.00 0.00 33.36 4.52
843 890 9.752961 CAATAAATACATGAAGATGATGCCAAA 57.247 29.630 0.00 0.00 33.36 3.28
844 891 9.754382 AATAAATACATGAAGATGATGCCAAAC 57.246 29.630 0.00 0.00 33.36 2.93
851 898 4.022068 TGAAGATGATGCCAAACAAAGGAC 60.022 41.667 0.00 0.00 0.00 3.85
855 902 2.238521 GATGCCAAACAAAGGACTGGA 58.761 47.619 0.00 0.00 0.00 3.86
865 912 9.238368 CCAAACAAAGGACTGGAGTAATTAATA 57.762 33.333 0.00 0.00 0.00 0.98
873 920 7.980099 AGGACTGGAGTAATTAATAAGTTCACG 59.020 37.037 8.46 0.00 0.00 4.35
899 946 2.167281 TCTTCTCACTGCTGTCCTATGC 59.833 50.000 0.00 0.00 0.00 3.14
910 957 3.825328 CTGTCCTATGCCCTTTAATGCT 58.175 45.455 0.00 0.00 0.00 3.79
923 970 6.877322 GCCCTTTAATGCTCGGTCTATATAAA 59.123 38.462 0.00 0.00 0.00 1.40
928 975 9.772973 TTTAATGCTCGGTCTATATAAACATGT 57.227 29.630 0.00 0.00 0.00 3.21
931 978 6.578944 TGCTCGGTCTATATAAACATGTTGT 58.421 36.000 12.82 6.91 0.00 3.32
932 979 7.045416 TGCTCGGTCTATATAAACATGTTGTT 58.955 34.615 12.82 5.32 43.41 2.83
933 980 7.011016 TGCTCGGTCTATATAAACATGTTGTTG 59.989 37.037 12.82 0.85 40.14 3.33
934 981 7.223971 GCTCGGTCTATATAAACATGTTGTTGA 59.776 37.037 12.82 3.15 40.14 3.18
935 982 8.642908 TCGGTCTATATAAACATGTTGTTGAG 57.357 34.615 12.82 6.64 40.14 3.02
937 984 9.261180 CGGTCTATATAAACATGTTGTTGAGAT 57.739 33.333 12.82 3.94 40.14 2.75
943 990 9.857656 ATATAAACATGTTGTTGAGATGAGGAT 57.142 29.630 12.82 0.00 40.14 3.24
958 1005 2.528639 GAGGATTCCTGCGATGCATCG 61.529 57.143 38.15 38.15 43.20 3.84
979 1026 6.561737 TCGGCATATACTAGACTCAAGAAG 57.438 41.667 0.00 0.00 0.00 2.85
984 1031 8.364142 GGCATATACTAGACTCAAGAAGACATT 58.636 37.037 0.00 0.00 0.00 2.71
1011 1058 2.180017 CGCAAGATGGCTGCAACC 59.820 61.111 0.00 0.00 43.02 3.77
1013 1060 1.509923 GCAAGATGGCTGCAACCTC 59.490 57.895 7.82 2.83 0.00 3.85
1021 1068 0.175531 GGCTGCAACCTCTCTCTCTC 59.824 60.000 0.50 0.00 0.00 3.20
1024 1071 2.445427 CTGCAACCTCTCTCTCTCTCA 58.555 52.381 0.00 0.00 0.00 3.27
1069 1116 0.988063 AGCCAGTTCTTCCCTCCTTC 59.012 55.000 0.00 0.00 0.00 3.46
1090 1137 0.391130 CACCCCAGGTATGTGTGTCG 60.391 60.000 0.00 0.00 32.11 4.35
1098 1145 2.103094 AGGTATGTGTGTCGATCCATGG 59.897 50.000 4.97 4.97 0.00 3.66
1100 1147 0.543277 ATGTGTGTCGATCCATGGCT 59.457 50.000 6.96 0.00 0.00 4.75
1102 1149 0.176680 GTGTGTCGATCCATGGCTCT 59.823 55.000 13.52 0.00 0.00 4.09
1107 1154 2.103094 TGTCGATCCATGGCTCTTTAGG 59.897 50.000 13.52 0.00 0.00 2.69
1138 1189 4.020839 CACTCCAATGGAAGCCTTCAATTT 60.021 41.667 4.24 0.00 30.90 1.82
1140 1191 4.419282 TCCAATGGAAGCCTTCAATTTCT 58.581 39.130 4.24 0.00 30.90 2.52
1163 1214 4.727507 TCTAAGATCAGTGCAGGTTCTC 57.272 45.455 0.00 0.00 0.00 2.87
1164 1215 4.348486 TCTAAGATCAGTGCAGGTTCTCT 58.652 43.478 0.00 0.00 0.00 3.10
1171 1222 0.784778 GTGCAGGTTCTCTCGAAACG 59.215 55.000 0.00 0.00 41.77 3.60
1173 1224 2.446341 CAGGTTCTCTCGAAACGGC 58.554 57.895 0.00 0.00 41.77 5.68
1195 1246 3.612004 CGAGACCGGATAAATGCTACTCC 60.612 52.174 9.46 0.00 0.00 3.85
1196 1247 3.574826 GAGACCGGATAAATGCTACTCCT 59.425 47.826 9.46 0.00 0.00 3.69
1197 1248 4.737578 AGACCGGATAAATGCTACTCCTA 58.262 43.478 9.46 0.00 0.00 2.94
1198 1249 4.523558 AGACCGGATAAATGCTACTCCTAC 59.476 45.833 9.46 0.00 0.00 3.18
1201 1252 4.283722 CCGGATAAATGCTACTCCTACCTT 59.716 45.833 0.00 0.00 0.00 3.50
1202 1253 5.221661 CCGGATAAATGCTACTCCTACCTTT 60.222 44.000 0.00 0.00 0.00 3.11
1205 1256 7.470981 CGGATAAATGCTACTCCTACCTTTGTA 60.471 40.741 0.00 0.00 0.00 2.41
1206 1257 8.208903 GGATAAATGCTACTCCTACCTTTGTAA 58.791 37.037 0.00 0.00 0.00 2.41
1208 1259 6.622427 AATGCTACTCCTACCTTTGTAACT 57.378 37.500 0.00 0.00 0.00 2.24
1219 1270 9.880157 TCCTACCTTTGTAACTCAATATAACAC 57.120 33.333 0.00 0.00 35.84 3.32
1220 1271 9.661563 CCTACCTTTGTAACTCAATATAACACA 57.338 33.333 0.00 0.00 35.84 3.72
1239 1290 7.956420 AACACATTTTCTAACACTATGTCGA 57.044 32.000 0.00 0.00 0.00 4.20
1240 1291 7.347508 ACACATTTTCTAACACTATGTCGAC 57.652 36.000 9.11 9.11 0.00 4.20
1241 1292 6.926826 ACACATTTTCTAACACTATGTCGACA 59.073 34.615 22.48 22.48 0.00 4.35
1242 1293 7.116376 ACACATTTTCTAACACTATGTCGACAG 59.884 37.037 24.41 13.64 0.00 3.51
1243 1294 7.116376 CACATTTTCTAACACTATGTCGACAGT 59.884 37.037 24.41 14.34 0.00 3.55
1244 1295 7.116376 ACATTTTCTAACACTATGTCGACAGTG 59.884 37.037 27.19 27.19 46.15 3.66
1273 1324 8.491331 AAAAACGCCTTATATTAAGTTACGGA 57.509 30.769 0.00 0.00 0.00 4.69
1274 1325 7.704789 AAACGCCTTATATTAAGTTACGGAG 57.295 36.000 0.00 0.00 0.00 4.63
1275 1326 5.225642 ACGCCTTATATTAAGTTACGGAGC 58.774 41.667 0.00 0.00 0.00 4.70
1276 1327 4.322804 CGCCTTATATTAAGTTACGGAGCG 59.677 45.833 0.00 0.00 0.00 5.03
1277 1328 5.464168 GCCTTATATTAAGTTACGGAGCGA 58.536 41.667 0.00 0.00 0.00 4.93
1278 1329 5.572126 GCCTTATATTAAGTTACGGAGCGAG 59.428 44.000 0.00 0.00 0.00 5.03
1279 1330 6.675987 CCTTATATTAAGTTACGGAGCGAGT 58.324 40.000 0.00 0.00 0.00 4.18
1280 1331 7.144000 CCTTATATTAAGTTACGGAGCGAGTT 58.856 38.462 0.00 0.00 0.00 3.01
1281 1332 7.650903 CCTTATATTAAGTTACGGAGCGAGTTT 59.349 37.037 0.00 0.00 0.00 2.66
1282 1333 6.823678 ATATTAAGTTACGGAGCGAGTTTG 57.176 37.500 0.00 0.00 0.00 2.93
1283 1334 2.521105 AAGTTACGGAGCGAGTTTGT 57.479 45.000 0.00 0.00 0.00 2.83
1284 1335 2.521105 AGTTACGGAGCGAGTTTGTT 57.479 45.000 0.00 0.00 0.00 2.83
1285 1336 2.830104 AGTTACGGAGCGAGTTTGTTT 58.170 42.857 0.00 0.00 0.00 2.83
1286 1337 2.542595 AGTTACGGAGCGAGTTTGTTTG 59.457 45.455 0.00 0.00 0.00 2.93
1302 1353 6.149474 AGTTTGTTTGAACATAGGATCTTCCG 59.851 38.462 0.00 0.00 39.19 4.30
1326 1377 7.011389 CCGCTGATTCTACAGATATTGAACAAA 59.989 37.037 0.00 0.00 39.94 2.83
1384 1444 9.787532 TTTAACTTTTGAACTGAATCAGTCTTG 57.212 29.630 17.02 6.77 44.62 3.02
1408 1502 7.051623 TGACTCAGTTTTAGTAACATTGTGGT 58.948 34.615 0.00 0.00 0.00 4.16
1450 1544 0.466543 AGGGCAAGTACGTGTGTCAA 59.533 50.000 10.54 0.00 0.00 3.18
1483 1577 0.389426 ACATACCGGACTGCGACAAC 60.389 55.000 9.46 0.00 0.00 3.32
1572 1666 4.466827 TGCTGCATTGAATAGTCATCCAT 58.533 39.130 0.00 0.00 32.48 3.41
1576 1679 7.884354 TGCTGCATTGAATAGTCATCCATTATA 59.116 33.333 0.00 0.00 32.48 0.98
1605 1708 7.112528 TCAAATGTCTTGTAATCGTGTGTAC 57.887 36.000 0.00 0.00 0.00 2.90
1657 1769 7.821359 GTCGGTAGGAGTTAAAGGTAATTCTTT 59.179 37.037 0.00 0.00 39.86 2.52
1661 1773 7.997773 AGGAGTTAAAGGTAATTCTTTGACC 57.002 36.000 9.55 0.00 41.33 4.02
1662 1774 7.523415 AGGAGTTAAAGGTAATTCTTTGACCA 58.477 34.615 9.55 0.00 41.33 4.02
1701 1866 1.202256 CGAACATACTCGCTAGGCACA 60.202 52.381 0.00 0.00 31.04 4.57
1754 1921 1.909302 ACCATCTCGGGATCAAAGTGT 59.091 47.619 0.00 0.00 40.22 3.55
1780 1947 1.084289 GCACCAGACCACGGTATTTC 58.916 55.000 0.00 0.00 34.02 2.17
1781 1948 1.609580 GCACCAGACCACGGTATTTCA 60.610 52.381 0.00 0.00 34.02 2.69
1791 1958 4.136796 CCACGGTATTTCATGGTGATCAT 58.863 43.478 0.00 0.00 36.31 2.45
1813 1985 1.592669 GACGGGATGGTGCTCGATG 60.593 63.158 0.00 0.00 0.00 3.84
1885 2060 3.259930 TCGAGCACGATGACACGA 58.740 55.556 0.88 0.00 43.81 4.35
1891 2066 2.411748 GAGCACGATGACACGAAAATCA 59.588 45.455 0.00 0.00 37.03 2.57
1900 2075 2.599973 GACACGAAAATCATGCCATTGC 59.400 45.455 0.00 0.00 38.26 3.56
1911 2086 2.095847 GCCATTGCACGTGCCATTG 61.096 57.895 35.72 26.22 41.18 2.82
1920 2095 2.260154 CGTGCCATTGCTGTGGTGA 61.260 57.895 9.25 0.00 41.47 4.02
1923 2098 0.540133 TGCCATTGCTGTGGTGACAT 60.540 50.000 9.25 0.00 41.47 3.06
1925 2100 1.250328 CCATTGCTGTGGTGACATGT 58.750 50.000 0.00 0.00 46.14 3.21
1926 2101 1.200716 CCATTGCTGTGGTGACATGTC 59.799 52.381 19.27 19.27 46.14 3.06
1927 2102 2.156917 CATTGCTGTGGTGACATGTCT 58.843 47.619 25.55 0.00 46.14 3.41
1931 2106 0.250424 CTGTGGTGACATGTCTGCCA 60.250 55.000 27.28 27.28 46.14 4.92
1934 2109 1.888512 GTGGTGACATGTCTGCCATTT 59.111 47.619 30.80 0.00 46.14 2.32
1936 2111 1.474077 GGTGACATGTCTGCCATTTCC 59.526 52.381 25.55 11.27 30.58 3.13
1937 2112 1.474077 GTGACATGTCTGCCATTTCCC 59.526 52.381 25.55 0.00 30.58 3.97
1938 2113 1.106285 GACATGTCTGCCATTTCCCC 58.894 55.000 18.83 0.00 0.00 4.81
1939 2114 0.324645 ACATGTCTGCCATTTCCCCC 60.325 55.000 0.00 0.00 0.00 5.40
1940 2115 0.032813 CATGTCTGCCATTTCCCCCT 60.033 55.000 0.00 0.00 0.00 4.79
1973 2182 6.268825 TCACTGACCTGTAACTGATAGAAC 57.731 41.667 0.00 0.00 0.00 3.01
1996 2206 3.896133 GGGGCGCACGTCGATCTA 61.896 66.667 10.83 0.00 41.67 1.98
1997 2207 2.654404 GGGCGCACGTCGATCTAC 60.654 66.667 10.83 0.00 41.67 2.59
1998 2208 2.654404 GGCGCACGTCGATCTACC 60.654 66.667 10.83 0.01 41.67 3.18
1999 2209 3.017314 GCGCACGTCGATCTACCG 61.017 66.667 0.30 0.00 41.67 4.02
2000 2210 2.705220 CGCACGTCGATCTACCGA 59.295 61.111 0.00 0.00 41.67 4.69
2022 2232 2.351060 CGACAAGCAATCACACAAGCAT 60.351 45.455 0.00 0.00 0.00 3.79
2028 2238 5.458041 AGCAATCACACAAGCATAAACTT 57.542 34.783 0.00 0.00 0.00 2.66
2050 2260 7.444299 ACTTTTGCATTTGTTTCTACCATGAT 58.556 30.769 0.00 0.00 0.00 2.45
2051 2261 7.933033 ACTTTTGCATTTGTTTCTACCATGATT 59.067 29.630 0.00 0.00 0.00 2.57
2052 2262 7.887996 TTTGCATTTGTTTCTACCATGATTC 57.112 32.000 0.00 0.00 0.00 2.52
2053 2263 6.839124 TGCATTTGTTTCTACCATGATTCT 57.161 33.333 0.00 0.00 0.00 2.40
2054 2264 6.623486 TGCATTTGTTTCTACCATGATTCTG 58.377 36.000 0.00 0.00 0.00 3.02
2055 2265 5.517770 GCATTTGTTTCTACCATGATTCTGC 59.482 40.000 0.00 0.00 0.00 4.26
2056 2266 4.944962 TTGTTTCTACCATGATTCTGCG 57.055 40.909 0.00 0.00 0.00 5.18
2057 2267 3.270027 TGTTTCTACCATGATTCTGCGG 58.730 45.455 0.00 0.00 0.00 5.69
2058 2268 3.055458 TGTTTCTACCATGATTCTGCGGA 60.055 43.478 0.00 0.00 0.00 5.54
2059 2269 3.904800 TTCTACCATGATTCTGCGGAA 57.095 42.857 11.11 11.11 35.78 4.30
2060 2270 3.904800 TCTACCATGATTCTGCGGAAA 57.095 42.857 12.96 0.00 34.90 3.13
2061 2271 3.531538 TCTACCATGATTCTGCGGAAAC 58.468 45.455 12.96 10.53 34.90 2.78
2062 2272 2.198827 ACCATGATTCTGCGGAAACA 57.801 45.000 19.16 19.16 38.32 2.83
2063 2273 1.812571 ACCATGATTCTGCGGAAACAC 59.187 47.619 19.25 11.02 37.13 3.32
2064 2274 1.811965 CCATGATTCTGCGGAAACACA 59.188 47.619 19.25 15.68 37.13 3.72
2065 2275 2.424601 CCATGATTCTGCGGAAACACAT 59.575 45.455 19.25 17.00 37.13 3.21
2066 2276 3.431856 CATGATTCTGCGGAAACACATG 58.568 45.455 24.69 24.69 37.13 3.21
2067 2277 1.811965 TGATTCTGCGGAAACACATGG 59.188 47.619 12.96 0.00 34.90 3.66
2068 2278 1.133025 GATTCTGCGGAAACACATGGG 59.867 52.381 12.96 0.00 34.90 4.00
2069 2279 0.179004 TTCTGCGGAAACACATGGGT 60.179 50.000 5.22 0.00 0.00 4.51
2070 2280 0.179004 TCTGCGGAAACACATGGGTT 60.179 50.000 7.75 7.75 0.00 4.11
2071 2281 1.072489 TCTGCGGAAACACATGGGTTA 59.928 47.619 15.06 0.00 0.00 2.85
2072 2282 1.199097 CTGCGGAAACACATGGGTTAC 59.801 52.381 15.06 9.50 0.00 2.50
2073 2283 0.524414 GCGGAAACACATGGGTTACC 59.476 55.000 15.06 9.11 37.24 2.85
2074 2284 1.170442 CGGAAACACATGGGTTACCC 58.830 55.000 15.06 14.66 45.71 3.69
2075 2285 1.271707 CGGAAACACATGGGTTACCCT 60.272 52.381 22.29 0.00 45.70 4.34
2076 2286 2.443416 GGAAACACATGGGTTACCCTC 58.557 52.381 22.29 7.76 45.70 4.30
2077 2287 2.041216 GGAAACACATGGGTTACCCTCT 59.959 50.000 22.29 6.11 45.70 3.69
2078 2288 3.264964 GGAAACACATGGGTTACCCTCTA 59.735 47.826 22.29 1.01 45.70 2.43
2079 2289 4.514401 GAAACACATGGGTTACCCTCTAG 58.486 47.826 22.29 11.42 45.70 2.43
2114 2324 1.830587 AAGCTCGGACATGCCACTGA 61.831 55.000 0.00 0.00 35.94 3.41
2127 2337 2.972505 ACTGACCGGCGCACAAAG 60.973 61.111 10.83 1.93 0.00 2.77
2138 2348 2.535574 GGCGCACAAAGTTTCAGAAAAG 59.464 45.455 10.83 0.00 0.00 2.27
2144 2354 4.800471 CACAAAGTTTCAGAAAAGTGGCTC 59.200 41.667 0.00 0.00 0.00 4.70
2147 2357 3.481453 AGTTTCAGAAAAGTGGCTCCTC 58.519 45.455 0.00 0.00 0.00 3.71
2149 2359 1.434188 TCAGAAAAGTGGCTCCTCCA 58.566 50.000 0.00 0.00 44.18 3.86
2163 2376 3.135530 GCTCCTCCATACCAGAAAGATGT 59.864 47.826 0.00 0.00 0.00 3.06
2188 2401 1.135721 GCATTGATCTGCAACCCCTTC 59.864 52.381 2.23 0.00 41.87 3.46
2221 2434 2.514824 GCCAGCTCGGACCATTCC 60.515 66.667 6.40 0.00 38.77 3.01
2236 2449 2.223572 CCATTCCGCTGCAAAATACCTC 60.224 50.000 0.00 0.00 0.00 3.85
2237 2450 2.192664 TTCCGCTGCAAAATACCTCA 57.807 45.000 0.00 0.00 0.00 3.86
2243 2456 2.805845 CTGCAAAATACCTCAGCATGC 58.194 47.619 10.51 10.51 34.35 4.06
2245 2458 2.827322 TGCAAAATACCTCAGCATGCTT 59.173 40.909 19.98 6.10 34.76 3.91
2246 2459 3.119388 TGCAAAATACCTCAGCATGCTTC 60.119 43.478 19.98 0.00 34.76 3.86
2272 2485 6.317893 TCTCTGACAGAAAACTTACCAAAACC 59.682 38.462 6.61 0.00 0.00 3.27
2312 2525 4.133078 GGACAAATTTGGTTCCAAATGCA 58.867 39.130 24.52 3.78 43.32 3.96
2315 2528 3.853355 AATTTGGTTCCAAATGCACCA 57.147 38.095 24.52 2.14 43.32 4.17
2316 2529 4.370094 AATTTGGTTCCAAATGCACCAT 57.630 36.364 24.52 9.85 43.32 3.55
2318 2531 2.006805 TGGTTCCAAATGCACCATCA 57.993 45.000 0.00 0.00 35.57 3.07
2349 2562 1.133025 CTGGATGAACATTTCGGGCAC 59.867 52.381 0.00 0.00 0.00 5.01
2350 2563 0.098728 GGATGAACATTTCGGGCACG 59.901 55.000 0.00 0.00 42.74 5.34
2364 2577 4.941609 CACGCTTATCCTGGTGCT 57.058 55.556 0.00 0.00 0.00 4.40
2366 2579 0.108186 CACGCTTATCCTGGTGCTCA 60.108 55.000 0.00 0.00 0.00 4.26
2370 2583 1.602311 CTTATCCTGGTGCTCATGGC 58.398 55.000 0.00 0.00 42.22 4.40
2385 2598 4.814041 GGCCCTCTCTGCCCTCCT 62.814 72.222 0.00 0.00 43.33 3.69
2395 2608 2.167487 CTCTGCCCTCCTCACTTTCTAC 59.833 54.545 0.00 0.00 0.00 2.59
2398 2611 2.237143 TGCCCTCCTCACTTTCTACATG 59.763 50.000 0.00 0.00 0.00 3.21
2404 2617 5.819901 CCTCCTCACTTTCTACATGATTTCC 59.180 44.000 0.00 0.00 0.00 3.13
2405 2618 6.373005 TCCTCACTTTCTACATGATTTCCA 57.627 37.500 0.00 0.00 0.00 3.53
2416 2629 3.119388 ACATGATTTCCATTGCTCAACCG 60.119 43.478 0.00 0.00 31.94 4.44
2420 2633 1.448985 TTCCATTGCTCAACCGTAGC 58.551 50.000 0.00 0.00 40.50 3.58
2421 2634 0.739462 TCCATTGCTCAACCGTAGCG 60.739 55.000 0.00 0.00 43.11 4.26
2422 2635 1.060937 CATTGCTCAACCGTAGCGC 59.939 57.895 0.00 0.00 43.11 5.92
2424 2637 2.796483 ATTGCTCAACCGTAGCGCCA 62.796 55.000 2.29 0.00 43.11 5.69
2425 2638 3.188786 GCTCAACCGTAGCGCCAG 61.189 66.667 2.29 0.00 0.00 4.85
2426 2639 2.571757 CTCAACCGTAGCGCCAGA 59.428 61.111 2.29 0.00 0.00 3.86
2427 2640 1.805945 CTCAACCGTAGCGCCAGAC 60.806 63.158 2.29 0.00 0.00 3.51
2428 2641 2.048597 CAACCGTAGCGCCAGACA 60.049 61.111 2.29 0.00 0.00 3.41
2430 2643 1.374252 AACCGTAGCGCCAGACAAG 60.374 57.895 2.29 0.00 0.00 3.16
2431 2644 1.812686 AACCGTAGCGCCAGACAAGA 61.813 55.000 2.29 0.00 0.00 3.02
2432 2645 1.141881 CCGTAGCGCCAGACAAGAT 59.858 57.895 2.29 0.00 0.00 2.40
2451 2668 2.177394 TTGTGCGAAGTATGCCAAGA 57.823 45.000 0.00 0.00 0.00 3.02
2459 2676 3.804325 CGAAGTATGCCAAGACCATACAG 59.196 47.826 12.42 2.42 44.62 2.74
2475 2692 4.755123 CCATACAGGTTTCGTTTTCTGACT 59.245 41.667 0.00 0.00 0.00 3.41
2483 2700 0.111089 CGTTTTCTGACTGTGAGCGC 60.111 55.000 0.00 0.00 0.00 5.92
2504 2721 5.446709 CGCTGTTTGGATTATAAGCTGATG 58.553 41.667 0.02 0.00 0.00 3.07
2517 2734 2.396608 AGCTGATGATCTACACTGCCT 58.603 47.619 0.00 0.00 0.00 4.75
2523 2740 5.604565 TGATGATCTACACTGCCTATGTTG 58.395 41.667 0.00 0.00 0.00 3.33
2528 2745 2.479566 ACACTGCCTATGTTGTCCAG 57.520 50.000 0.00 0.00 0.00 3.86
2536 2753 3.550437 CTATGTTGTCCAGAGGAAGGG 57.450 52.381 0.00 0.00 31.38 3.95
2537 2754 2.044793 ATGTTGTCCAGAGGAAGGGA 57.955 50.000 0.00 0.00 31.38 4.20
2538 2755 2.044793 TGTTGTCCAGAGGAAGGGAT 57.955 50.000 0.00 0.00 35.25 3.85
2539 2756 1.630369 TGTTGTCCAGAGGAAGGGATG 59.370 52.381 0.00 0.00 35.25 3.51
2540 2757 0.620556 TTGTCCAGAGGAAGGGATGC 59.379 55.000 0.00 0.00 35.25 3.91
2541 2758 0.547471 TGTCCAGAGGAAGGGATGCA 60.547 55.000 0.00 0.00 35.25 3.96
2542 2759 0.107459 GTCCAGAGGAAGGGATGCAC 60.107 60.000 0.00 0.00 35.25 4.57
2543 2760 0.252881 TCCAGAGGAAGGGATGCACT 60.253 55.000 0.00 0.00 0.00 4.40
2544 2761 1.008327 TCCAGAGGAAGGGATGCACTA 59.992 52.381 0.00 0.00 0.00 2.74
2545 2762 1.415659 CCAGAGGAAGGGATGCACTAG 59.584 57.143 0.00 0.00 0.00 2.57
2546 2763 2.114616 CAGAGGAAGGGATGCACTAGT 58.885 52.381 0.00 0.00 0.00 2.57
2547 2764 3.300388 CAGAGGAAGGGATGCACTAGTA 58.700 50.000 0.00 0.00 0.00 1.82
2548 2765 3.320541 CAGAGGAAGGGATGCACTAGTAG 59.679 52.174 0.00 0.00 0.00 2.57
2549 2766 3.205507 AGAGGAAGGGATGCACTAGTAGA 59.794 47.826 3.59 0.00 0.00 2.59
2550 2767 3.961408 GAGGAAGGGATGCACTAGTAGAA 59.039 47.826 3.59 0.00 0.00 2.10
2551 2768 4.362677 AGGAAGGGATGCACTAGTAGAAA 58.637 43.478 3.59 0.00 0.00 2.52
2552 2769 4.783227 AGGAAGGGATGCACTAGTAGAAAA 59.217 41.667 3.59 0.00 0.00 2.29
2553 2770 5.250774 AGGAAGGGATGCACTAGTAGAAAAA 59.749 40.000 3.59 0.00 0.00 1.94
2554 2771 5.586643 GGAAGGGATGCACTAGTAGAAAAAG 59.413 44.000 3.59 0.00 0.00 2.27
2555 2772 5.104259 AGGGATGCACTAGTAGAAAAAGG 57.896 43.478 3.59 0.00 0.00 3.11
2556 2773 4.080299 AGGGATGCACTAGTAGAAAAAGGG 60.080 45.833 3.59 0.00 0.00 3.95
2557 2774 3.628032 GGATGCACTAGTAGAAAAAGGGC 59.372 47.826 3.59 0.00 40.16 5.19
2558 2775 3.067684 TGCACTAGTAGAAAAAGGGCC 57.932 47.619 3.59 0.00 38.95 5.80
2559 2776 2.642807 TGCACTAGTAGAAAAAGGGCCT 59.357 45.455 0.00 0.00 38.95 5.19
2560 2777 3.841845 TGCACTAGTAGAAAAAGGGCCTA 59.158 43.478 6.41 0.00 38.95 3.93
2561 2778 4.473559 TGCACTAGTAGAAAAAGGGCCTAT 59.526 41.667 6.41 0.00 38.95 2.57
2562 2779 5.045140 TGCACTAGTAGAAAAAGGGCCTATT 60.045 40.000 6.41 5.13 38.95 1.73
2563 2780 5.297029 GCACTAGTAGAAAAAGGGCCTATTG 59.703 44.000 6.41 0.00 33.42 1.90
2564 2781 6.415573 CACTAGTAGAAAAAGGGCCTATTGT 58.584 40.000 6.41 6.68 0.00 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 0.745486 ATAAAACCGCACCGTAGCCC 60.745 55.000 0.00 0.00 0.00 5.19
39 40 1.077915 CCGTTATAAAACCGCACCGT 58.922 50.000 0.00 0.00 31.46 4.83
40 41 0.247775 GCCGTTATAAAACCGCACCG 60.248 55.000 0.00 0.00 38.98 4.94
67 68 4.947147 TGCCGCCCAACTGACCAC 62.947 66.667 0.00 0.00 0.00 4.16
81 82 3.357079 CTCAACCACCAGCGTGCC 61.357 66.667 0.00 0.00 38.79 5.01
96 97 6.469782 TCTCCCAATGAAAAATAATGGCTC 57.530 37.500 0.00 0.00 0.00 4.70
97 98 6.872585 TTCTCCCAATGAAAAATAATGGCT 57.127 33.333 0.00 0.00 0.00 4.75
98 99 6.539826 CCTTTCTCCCAATGAAAAATAATGGC 59.460 38.462 0.00 0.00 33.70 4.40
112 113 6.658555 AATATCCTCTTTCCTTTCTCCCAA 57.341 37.500 0.00 0.00 0.00 4.12
113 114 6.426587 CAAATATCCTCTTTCCTTTCTCCCA 58.573 40.000 0.00 0.00 0.00 4.37
115 116 5.830457 CCCAAATATCCTCTTTCCTTTCTCC 59.170 44.000 0.00 0.00 0.00 3.71
122 123 6.867519 TTTTTCCCCAAATATCCTCTTTCC 57.132 37.500 0.00 0.00 0.00 3.13
123 124 6.763135 GCATTTTTCCCCAAATATCCTCTTTC 59.237 38.462 0.00 0.00 0.00 2.62
142 143 0.978151 TTGAGCAGCCATGGCATTTT 59.022 45.000 37.18 19.89 44.88 1.82
174 175 5.343325 GCTATAACTGCTCAAAAGTTTGCAC 59.657 40.000 0.00 0.00 38.73 4.57
186 210 4.891992 TTCCCTATGGCTATAACTGCTC 57.108 45.455 0.00 0.00 0.00 4.26
199 223 4.215109 CCCCAACTAACCATTTCCCTATG 58.785 47.826 0.00 0.00 0.00 2.23
206 230 5.516062 GGAGTTAGACCCCAACTAACCATTT 60.516 44.000 12.24 0.00 45.99 2.32
248 272 4.039124 TGCTTTGAAGTTCCCTCCAATTTC 59.961 41.667 0.00 0.00 0.00 2.17
262 286 7.856894 CCCAAAACAAACAATTATGCTTTGAAG 59.143 33.333 12.10 0.00 34.50 3.02
263 287 7.554118 TCCCAAAACAAACAATTATGCTTTGAA 59.446 29.630 12.10 2.74 34.50 2.69
265 289 7.131565 GTCCCAAAACAAACAATTATGCTTTG 58.868 34.615 6.83 6.83 35.51 2.77
266 290 6.262049 GGTCCCAAAACAAACAATTATGCTTT 59.738 34.615 0.00 0.00 0.00 3.51
274 309 3.653164 AGAGGGTCCCAAAACAAACAAT 58.347 40.909 11.55 0.00 0.00 2.71
286 321 0.617820 TCACCAGCTAAGAGGGTCCC 60.618 60.000 0.00 0.00 31.03 4.46
298 334 0.248866 CCCAACAAACGTTCACCAGC 60.249 55.000 0.00 0.00 0.00 4.85
372 408 8.696043 ATTGGCATGCTAGTATGAAGAAATTA 57.304 30.769 23.23 1.25 0.00 1.40
374 410 7.255730 GGAATTGGCATGCTAGTATGAAGAAAT 60.256 37.037 23.23 12.87 0.00 2.17
382 418 4.105377 AGGAAGGAATTGGCATGCTAGTAT 59.895 41.667 18.92 0.00 0.00 2.12
436 472 2.815211 GAACATGCTCGCAGCCGA 60.815 61.111 0.00 0.00 41.51 5.54
447 483 1.813513 AGGAACTCCAAGCGAACATG 58.186 50.000 0.00 0.00 38.89 3.21
448 484 2.427506 GAAGGAACTCCAAGCGAACAT 58.572 47.619 0.00 0.00 38.49 2.71
475 511 5.160641 CAATAATGCTAACTGGCAAACGTT 58.839 37.500 0.00 0.00 45.68 3.99
516 552 6.650807 CACACACACAAAACTACCTCTATCAT 59.349 38.462 0.00 0.00 0.00 2.45
518 554 5.989777 ACACACACACAAAACTACCTCTATC 59.010 40.000 0.00 0.00 0.00 2.08
519 555 5.758296 CACACACACACAAAACTACCTCTAT 59.242 40.000 0.00 0.00 0.00 1.98
521 557 3.938963 CACACACACACAAAACTACCTCT 59.061 43.478 0.00 0.00 0.00 3.69
522 558 3.687698 ACACACACACACAAAACTACCTC 59.312 43.478 0.00 0.00 0.00 3.85
523 559 3.438781 CACACACACACACAAAACTACCT 59.561 43.478 0.00 0.00 0.00 3.08
524 560 3.189702 ACACACACACACACAAAACTACC 59.810 43.478 0.00 0.00 0.00 3.18
525 561 4.155449 CACACACACACACACAAAACTAC 58.845 43.478 0.00 0.00 0.00 2.73
527 563 2.621055 ACACACACACACACACAAAACT 59.379 40.909 0.00 0.00 0.00 2.66
528 564 2.723658 CACACACACACACACACAAAAC 59.276 45.455 0.00 0.00 0.00 2.43
529 565 2.359214 ACACACACACACACACACAAAA 59.641 40.909 0.00 0.00 0.00 2.44
530 566 1.950216 ACACACACACACACACACAAA 59.050 42.857 0.00 0.00 0.00 2.83
531 567 1.265365 CACACACACACACACACACAA 59.735 47.619 0.00 0.00 0.00 3.33
532 568 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
533 569 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
534 570 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
535 571 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
536 572 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
537 573 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
538 574 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
539 575 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
540 576 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
541 577 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
542 578 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
543 579 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
544 580 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
545 581 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
546 582 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
547 583 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
548 584 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
549 585 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
550 586 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
551 587 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
552 588 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
553 589 1.152510 TCACACACACACACACACAC 58.847 50.000 0.00 0.00 0.00 3.82
554 590 2.106477 ATCACACACACACACACACA 57.894 45.000 0.00 0.00 0.00 3.72
555 591 3.120025 TGAAATCACACACACACACACAC 60.120 43.478 0.00 0.00 0.00 3.82
604 647 7.564988 CAAACTATAGGATCCGAAACGAATTC 58.435 38.462 5.98 0.00 34.52 2.17
610 653 3.493503 CCGCAAACTATAGGATCCGAAAC 59.506 47.826 5.98 0.00 0.00 2.78
630 673 0.887387 ACGGGTCCAATGTTTGTCCG 60.887 55.000 0.00 0.00 40.28 4.79
638 681 1.272212 CCAAAGGAAACGGGTCCAATG 59.728 52.381 9.10 6.96 40.48 2.82
683 726 2.363683 AGCTTTCTGATAGCAGGTTGC 58.636 47.619 19.75 9.64 45.46 4.17
727 770 3.475774 GTAACTCACACGCGCCCG 61.476 66.667 5.73 0.00 41.14 6.13
735 778 6.257849 CAGTCTGCTTTTTACTGTAACTCACA 59.742 38.462 0.00 0.00 36.66 3.58
737 780 5.758296 CCAGTCTGCTTTTTACTGTAACTCA 59.242 40.000 0.00 0.00 39.17 3.41
754 801 0.105039 GGATTACTCCCGCCAGTCTG 59.895 60.000 0.00 0.00 35.28 3.51
759 806 2.818751 AAATTGGATTACTCCCGCCA 57.181 45.000 0.00 0.00 41.29 5.69
765 812 6.799925 CGTGGTTGTGTAAAATTGGATTACTC 59.200 38.462 1.39 0.00 34.94 2.59
783 830 1.065358 GATGTGGACGTACGTGGTTG 58.935 55.000 28.16 0.00 0.00 3.77
788 835 3.719924 TGAAAAAGATGTGGACGTACGT 58.280 40.909 23.04 23.04 0.00 3.57
789 836 3.739300 ACTGAAAAAGATGTGGACGTACG 59.261 43.478 15.01 15.01 0.00 3.67
790 837 5.018695 CACTGAAAAAGATGTGGACGTAC 57.981 43.478 0.00 0.00 0.00 3.67
805 852 9.473007 TTCATGTATTTATTGGATCCACTGAAA 57.527 29.630 15.91 14.86 0.00 2.69
829 876 4.219288 AGTCCTTTGTTTGGCATCATCTTC 59.781 41.667 0.00 0.00 0.00 2.87
832 879 3.367703 CCAGTCCTTTGTTTGGCATCATC 60.368 47.826 0.00 0.00 0.00 2.92
833 880 2.564062 CCAGTCCTTTGTTTGGCATCAT 59.436 45.455 0.00 0.00 0.00 2.45
834 881 1.962807 CCAGTCCTTTGTTTGGCATCA 59.037 47.619 0.00 0.00 0.00 3.07
835 882 2.229784 CTCCAGTCCTTTGTTTGGCATC 59.770 50.000 0.00 0.00 0.00 3.91
836 883 2.242043 CTCCAGTCCTTTGTTTGGCAT 58.758 47.619 0.00 0.00 0.00 4.40
837 884 1.064017 ACTCCAGTCCTTTGTTTGGCA 60.064 47.619 0.00 0.00 0.00 4.92
838 885 1.692411 ACTCCAGTCCTTTGTTTGGC 58.308 50.000 0.00 0.00 0.00 4.52
851 898 7.534085 TGCGTGAACTTATTAATTACTCCAG 57.466 36.000 0.00 0.00 0.00 3.86
865 912 4.867047 CAGTGAGAAGATATGCGTGAACTT 59.133 41.667 0.00 0.00 0.00 2.66
873 920 3.129871 GGACAGCAGTGAGAAGATATGC 58.870 50.000 0.00 0.00 37.15 3.14
899 946 7.876068 TGTTTATATAGACCGAGCATTAAAGGG 59.124 37.037 1.24 0.00 0.00 3.95
910 957 8.471609 TCTCAACAACATGTTTATATAGACCGA 58.528 33.333 8.77 0.00 38.77 4.69
923 970 4.946157 GGAATCCTCATCTCAACAACATGT 59.054 41.667 0.00 0.00 0.00 3.21
928 975 3.614092 GCAGGAATCCTCATCTCAACAA 58.386 45.455 0.00 0.00 0.00 2.83
931 978 2.110578 TCGCAGGAATCCTCATCTCAA 58.889 47.619 0.00 0.00 0.00 3.02
932 979 1.780503 TCGCAGGAATCCTCATCTCA 58.219 50.000 0.00 0.00 0.00 3.27
933 980 2.686235 CATCGCAGGAATCCTCATCTC 58.314 52.381 0.00 0.00 0.00 2.75
934 981 1.270732 GCATCGCAGGAATCCTCATCT 60.271 52.381 0.00 0.00 0.00 2.90
935 982 1.155042 GCATCGCAGGAATCCTCATC 58.845 55.000 0.00 0.00 0.00 2.92
937 984 0.471191 ATGCATCGCAGGAATCCTCA 59.529 50.000 0.00 0.00 43.65 3.86
938 985 1.155042 GATGCATCGCAGGAATCCTC 58.845 55.000 11.68 0.00 43.65 3.71
939 986 0.602106 CGATGCATCGCAGGAATCCT 60.602 55.000 33.70 0.00 43.65 3.24
940 987 1.864862 CGATGCATCGCAGGAATCC 59.135 57.895 33.70 0.12 43.65 3.01
958 1005 7.278461 TGTCTTCTTGAGTCTAGTATATGCC 57.722 40.000 1.45 0.00 0.00 4.40
979 1026 5.504665 CCATCTTGCGGAAACTATGAATGTC 60.505 44.000 7.57 0.00 0.00 3.06
984 1031 2.092968 AGCCATCTTGCGGAAACTATGA 60.093 45.455 7.57 0.00 36.02 2.15
1011 1058 6.206243 GGATCTTGAAGATGAGAGAGAGAGAG 59.794 46.154 13.18 0.00 34.53 3.20
1013 1060 6.066690 AGGATCTTGAAGATGAGAGAGAGAG 58.933 44.000 13.18 0.00 34.53 3.20
1021 1068 4.645762 TGACGAGGATCTTGAAGATGAG 57.354 45.455 13.18 3.66 34.53 2.90
1024 1071 3.551863 GCGATGACGAGGATCTTGAAGAT 60.552 47.826 7.53 7.53 42.66 2.40
1069 1116 0.984230 ACACACATACCTGGGGTGAG 59.016 55.000 18.25 13.91 36.19 3.51
1090 1137 3.645687 AGAGACCTAAAGAGCCATGGATC 59.354 47.826 22.68 22.68 0.00 3.36
1102 1149 7.210582 TTCCATTGGAGTGGTAGAGACCTAAA 61.211 42.308 5.36 0.00 38.77 1.85
1107 1154 3.680196 GCTTCCATTGGAGTGGTAGAGAC 60.680 52.174 5.36 0.00 38.52 3.36
1115 1162 2.205022 TGAAGGCTTCCATTGGAGTG 57.795 50.000 23.68 4.62 31.21 3.51
1116 1163 2.978156 TTGAAGGCTTCCATTGGAGT 57.022 45.000 23.68 0.00 31.21 3.85
1118 1165 4.419282 AGAAATTGAAGGCTTCCATTGGA 58.581 39.130 22.72 0.00 0.00 3.53
1121 1168 9.129532 CTTAGATAGAAATTGAAGGCTTCCATT 57.870 33.333 23.68 20.64 0.00 3.16
1122 1169 8.497745 TCTTAGATAGAAATTGAAGGCTTCCAT 58.502 33.333 23.68 15.89 0.00 3.41
1123 1170 7.861629 TCTTAGATAGAAATTGAAGGCTTCCA 58.138 34.615 23.68 14.16 0.00 3.53
1124 1171 8.916628 ATCTTAGATAGAAATTGAAGGCTTCC 57.083 34.615 23.68 8.44 36.22 3.46
1138 1189 6.132658 AGAACCTGCACTGATCTTAGATAGA 58.867 40.000 0.00 0.00 37.28 1.98
1140 1191 6.132658 AGAGAACCTGCACTGATCTTAGATA 58.867 40.000 0.00 0.00 0.00 1.98
1171 1222 0.249911 AGCATTTATCCGGTCTCGCC 60.250 55.000 0.00 0.00 34.56 5.54
1173 1224 3.566523 GAGTAGCATTTATCCGGTCTCG 58.433 50.000 0.00 0.00 0.00 4.04
1177 1228 3.577415 GGTAGGAGTAGCATTTATCCGGT 59.423 47.826 0.00 0.00 36.91 5.28
1180 1231 6.592870 ACAAAGGTAGGAGTAGCATTTATCC 58.407 40.000 0.00 0.00 0.00 2.59
1217 1268 7.116376 ACTGTCGACATAGTGTTAGAAAATGTG 59.884 37.037 20.40 2.94 31.19 3.21
1219 1270 7.448228 CACTGTCGACATAGTGTTAGAAAATG 58.552 38.462 23.00 8.72 39.48 2.32
1220 1271 7.582435 CACTGTCGACATAGTGTTAGAAAAT 57.418 36.000 23.00 0.00 39.48 1.82
1248 1299 8.491331 TCCGTAACTTAATATAAGGCGTTTTT 57.509 30.769 0.00 0.00 0.00 1.94
1249 1300 7.254556 GCTCCGTAACTTAATATAAGGCGTTTT 60.255 37.037 0.00 0.00 0.00 2.43
1250 1301 6.201615 GCTCCGTAACTTAATATAAGGCGTTT 59.798 38.462 0.00 0.00 0.00 3.60
1251 1302 5.693555 GCTCCGTAACTTAATATAAGGCGTT 59.306 40.000 0.00 0.00 0.00 4.84
1252 1303 5.225642 GCTCCGTAACTTAATATAAGGCGT 58.774 41.667 2.53 0.00 0.00 5.68
1253 1304 4.322804 CGCTCCGTAACTTAATATAAGGCG 59.677 45.833 2.53 0.00 0.00 5.52
1254 1305 5.464168 TCGCTCCGTAACTTAATATAAGGC 58.536 41.667 2.53 0.00 0.00 4.35
1255 1306 6.675987 ACTCGCTCCGTAACTTAATATAAGG 58.324 40.000 2.53 0.00 0.00 2.69
1256 1307 8.477709 CAAACTCGCTCCGTAACTTAATATAAG 58.522 37.037 0.00 0.00 0.00 1.73
1257 1308 7.975616 ACAAACTCGCTCCGTAACTTAATATAA 59.024 33.333 0.00 0.00 0.00 0.98
1258 1309 7.483307 ACAAACTCGCTCCGTAACTTAATATA 58.517 34.615 0.00 0.00 0.00 0.86
1259 1310 6.335777 ACAAACTCGCTCCGTAACTTAATAT 58.664 36.000 0.00 0.00 0.00 1.28
1260 1311 5.713025 ACAAACTCGCTCCGTAACTTAATA 58.287 37.500 0.00 0.00 0.00 0.98
1261 1312 4.563061 ACAAACTCGCTCCGTAACTTAAT 58.437 39.130 0.00 0.00 0.00 1.40
1262 1313 3.981211 ACAAACTCGCTCCGTAACTTAA 58.019 40.909 0.00 0.00 0.00 1.85
1263 1314 3.648339 ACAAACTCGCTCCGTAACTTA 57.352 42.857 0.00 0.00 0.00 2.24
1264 1315 2.521105 ACAAACTCGCTCCGTAACTT 57.479 45.000 0.00 0.00 0.00 2.66
1265 1316 2.521105 AACAAACTCGCTCCGTAACT 57.479 45.000 0.00 0.00 0.00 2.24
1266 1317 2.540931 TCAAACAAACTCGCTCCGTAAC 59.459 45.455 0.00 0.00 0.00 2.50
1267 1318 2.823984 TCAAACAAACTCGCTCCGTAA 58.176 42.857 0.00 0.00 0.00 3.18
1268 1319 2.512485 TCAAACAAACTCGCTCCGTA 57.488 45.000 0.00 0.00 0.00 4.02
1269 1320 1.329599 GTTCAAACAAACTCGCTCCGT 59.670 47.619 0.00 0.00 0.00 4.69
1270 1321 1.329292 TGTTCAAACAAACTCGCTCCG 59.671 47.619 0.00 0.00 35.67 4.63
1271 1322 3.626028 ATGTTCAAACAAACTCGCTCC 57.374 42.857 0.00 0.00 43.03 4.70
1272 1323 4.451096 TCCTATGTTCAAACAAACTCGCTC 59.549 41.667 0.00 0.00 43.03 5.03
1273 1324 4.385825 TCCTATGTTCAAACAAACTCGCT 58.614 39.130 0.00 0.00 43.03 4.93
1274 1325 4.742438 TCCTATGTTCAAACAAACTCGC 57.258 40.909 0.00 0.00 43.03 5.03
1275 1326 6.727824 AGATCCTATGTTCAAACAAACTCG 57.272 37.500 0.00 0.00 43.03 4.18
1276 1327 7.530863 GGAAGATCCTATGTTCAAACAAACTC 58.469 38.462 0.00 0.00 36.61 3.01
1277 1328 6.149474 CGGAAGATCCTATGTTCAAACAAACT 59.851 38.462 0.00 0.00 37.09 2.66
1278 1329 6.314784 CGGAAGATCCTATGTTCAAACAAAC 58.685 40.000 0.00 0.00 37.09 2.93
1279 1330 5.106317 GCGGAAGATCCTATGTTCAAACAAA 60.106 40.000 0.00 0.00 37.09 2.83
1280 1331 4.394920 GCGGAAGATCCTATGTTCAAACAA 59.605 41.667 0.00 0.00 37.09 2.83
1281 1332 3.938963 GCGGAAGATCCTATGTTCAAACA 59.061 43.478 0.00 0.00 37.62 2.83
1282 1333 4.034510 CAGCGGAAGATCCTATGTTCAAAC 59.965 45.833 0.00 0.00 34.50 2.93
1283 1334 4.081142 TCAGCGGAAGATCCTATGTTCAAA 60.081 41.667 0.00 0.00 34.50 2.69
1284 1335 3.450817 TCAGCGGAAGATCCTATGTTCAA 59.549 43.478 0.00 0.00 34.50 2.69
1285 1336 3.031013 TCAGCGGAAGATCCTATGTTCA 58.969 45.455 0.00 0.00 34.50 3.18
1286 1337 3.735237 TCAGCGGAAGATCCTATGTTC 57.265 47.619 0.00 0.00 33.30 3.18
1384 1444 7.492352 ACCACAATGTTACTAAAACTGAGTC 57.508 36.000 0.00 0.00 0.00 3.36
1450 1544 1.668419 GTATGTCCTCGCATTTGCCT 58.332 50.000 0.00 0.00 37.91 4.75
1508 1602 2.436109 GCACTGCCCTCCTTTGGA 59.564 61.111 0.00 0.00 0.00 3.53
1576 1679 8.017373 CACACGATTACAAGACATTTGAGAAAT 58.983 33.333 0.00 0.00 0.00 2.17
1605 1708 7.416817 TCACATTTTATTACCGATGCTGATTG 58.583 34.615 0.00 0.00 0.00 2.67
1657 1769 2.618139 TGGTCTCCCCACTGGTCA 59.382 61.111 0.00 0.00 38.72 4.02
1714 1881 2.601763 GTGCGTTAGAGACCATTTACCG 59.398 50.000 0.00 0.00 0.00 4.02
1754 1921 1.338674 CCGTGGTCTGGTGCTTCATAA 60.339 52.381 0.00 0.00 0.00 1.90
1781 1948 0.181114 CCCGTCACCATGATCACCAT 59.819 55.000 0.00 0.00 35.44 3.55
1791 1958 2.927856 AGCACCATCCCGTCACCA 60.928 61.111 0.00 0.00 0.00 4.17
1900 2075 2.256158 CCACAGCAATGGCACGTG 59.744 61.111 12.28 12.28 44.61 4.49
1911 2086 1.580845 GGCAGACATGTCACCACAGC 61.581 60.000 27.02 18.29 35.41 4.40
1920 2095 0.324645 GGGGGAAATGGCAGACATGT 60.325 55.000 0.00 0.00 40.44 3.21
1923 2098 1.284785 CTTAGGGGGAAATGGCAGACA 59.715 52.381 0.00 0.00 0.00 3.41
1925 2100 0.258774 GCTTAGGGGGAAATGGCAGA 59.741 55.000 0.00 0.00 0.00 4.26
1926 2101 0.033208 TGCTTAGGGGGAAATGGCAG 60.033 55.000 0.00 0.00 0.00 4.85
1927 2102 0.033208 CTGCTTAGGGGGAAATGGCA 60.033 55.000 0.00 0.00 0.00 4.92
1931 2106 3.832490 GTGAAAACTGCTTAGGGGGAAAT 59.168 43.478 0.00 0.00 0.00 2.17
1934 2109 2.062636 AGTGAAAACTGCTTAGGGGGA 58.937 47.619 0.00 0.00 0.00 4.81
1936 2111 2.814336 GTCAGTGAAAACTGCTTAGGGG 59.186 50.000 0.00 0.00 37.63 4.79
1937 2112 2.814336 GGTCAGTGAAAACTGCTTAGGG 59.186 50.000 0.00 0.00 37.63 3.53
1938 2113 3.499918 CAGGTCAGTGAAAACTGCTTAGG 59.500 47.826 0.00 0.00 37.63 2.69
1939 2114 4.130118 ACAGGTCAGTGAAAACTGCTTAG 58.870 43.478 16.40 0.00 37.63 2.18
1940 2115 4.150897 ACAGGTCAGTGAAAACTGCTTA 57.849 40.909 16.40 0.00 37.63 3.09
1958 2160 5.050490 CCCGGATTGTTCTATCAGTTACAG 58.950 45.833 0.73 0.00 0.00 2.74
1989 2199 0.376152 GCTTGTCGTCGGTAGATCGA 59.624 55.000 0.00 0.00 36.76 3.59
1990 2200 0.098200 TGCTTGTCGTCGGTAGATCG 59.902 55.000 0.00 0.00 0.00 3.69
1991 2201 2.273370 TTGCTTGTCGTCGGTAGATC 57.727 50.000 0.00 0.00 0.00 2.75
1992 2202 2.165641 TGATTGCTTGTCGTCGGTAGAT 59.834 45.455 0.00 0.00 0.00 1.98
1993 2203 1.542472 TGATTGCTTGTCGTCGGTAGA 59.458 47.619 0.00 0.00 0.00 2.59
1994 2204 1.654105 GTGATTGCTTGTCGTCGGTAG 59.346 52.381 0.00 0.00 0.00 3.18
1995 2205 1.000052 TGTGATTGCTTGTCGTCGGTA 60.000 47.619 0.00 0.00 0.00 4.02
1996 2206 0.249699 TGTGATTGCTTGTCGTCGGT 60.250 50.000 0.00 0.00 0.00 4.69
1997 2207 0.163788 GTGTGATTGCTTGTCGTCGG 59.836 55.000 0.00 0.00 0.00 4.79
1998 2208 0.858583 TGTGTGATTGCTTGTCGTCG 59.141 50.000 0.00 0.00 0.00 5.12
1999 2209 2.908634 CTTGTGTGATTGCTTGTCGTC 58.091 47.619 0.00 0.00 0.00 4.20
2000 2210 1.002468 GCTTGTGTGATTGCTTGTCGT 60.002 47.619 0.00 0.00 0.00 4.34
2001 2211 1.002576 TGCTTGTGTGATTGCTTGTCG 60.003 47.619 0.00 0.00 0.00 4.35
2002 2212 2.780065 TGCTTGTGTGATTGCTTGTC 57.220 45.000 0.00 0.00 0.00 3.18
2003 2213 4.852134 TTATGCTTGTGTGATTGCTTGT 57.148 36.364 0.00 0.00 0.00 3.16
2022 2232 9.039870 CATGGTAGAAACAAATGCAAAAGTTTA 57.960 29.630 11.98 0.46 34.62 2.01
2028 2238 7.599621 CAGAATCATGGTAGAAACAAATGCAAA 59.400 33.333 0.00 0.00 0.00 3.68
2050 2260 0.179004 ACCCATGTGTTTCCGCAGAA 60.179 50.000 0.00 0.00 33.91 3.02
2051 2261 0.179004 AACCCATGTGTTTCCGCAGA 60.179 50.000 0.00 0.00 33.91 4.26
2052 2262 1.199097 GTAACCCATGTGTTTCCGCAG 59.801 52.381 0.00 0.00 33.91 5.18
2053 2263 1.240256 GTAACCCATGTGTTTCCGCA 58.760 50.000 0.00 0.00 35.14 5.69
2054 2264 0.524414 GGTAACCCATGTGTTTCCGC 59.476 55.000 0.00 0.00 0.00 5.54
2067 2277 7.823310 CCTTTCTTTAAGAACTAGAGGGTAACC 59.177 40.741 6.93 0.00 46.49 2.85
2068 2278 8.591940 TCCTTTCTTTAAGAACTAGAGGGTAAC 58.408 37.037 17.91 0.00 33.26 2.50
2069 2279 8.731591 TCCTTTCTTTAAGAACTAGAGGGTAA 57.268 34.615 17.91 2.62 33.26 2.85
2070 2280 8.731591 TTCCTTTCTTTAAGAACTAGAGGGTA 57.268 34.615 17.91 8.23 33.26 3.69
2071 2281 7.628501 TTCCTTTCTTTAAGAACTAGAGGGT 57.371 36.000 17.91 0.00 33.26 4.34
2072 2282 7.119992 GCTTTCCTTTCTTTAAGAACTAGAGGG 59.880 40.741 17.91 4.86 33.26 4.30
2073 2283 7.880713 AGCTTTCCTTTCTTTAAGAACTAGAGG 59.119 37.037 13.99 13.99 33.26 3.69
2074 2284 8.840833 AGCTTTCCTTTCTTTAAGAACTAGAG 57.159 34.615 6.93 2.32 33.26 2.43
2075 2285 7.599245 CGAGCTTTCCTTTCTTTAAGAACTAGA 59.401 37.037 6.93 2.10 33.26 2.43
2076 2286 7.148557 CCGAGCTTTCCTTTCTTTAAGAACTAG 60.149 40.741 6.93 3.37 33.26 2.57
2077 2287 6.649557 CCGAGCTTTCCTTTCTTTAAGAACTA 59.350 38.462 6.93 0.00 33.26 2.24
2078 2288 5.470437 CCGAGCTTTCCTTTCTTTAAGAACT 59.530 40.000 6.93 0.00 33.26 3.01
2079 2289 5.469084 TCCGAGCTTTCCTTTCTTTAAGAAC 59.531 40.000 6.93 0.00 33.26 3.01
2114 2324 2.058829 CTGAAACTTTGTGCGCCGGT 62.059 55.000 4.18 0.00 0.00 5.28
2127 2337 2.554462 GGAGGAGCCACTTTTCTGAAAC 59.446 50.000 1.58 0.00 36.34 2.78
2144 2354 4.444022 CCTCACATCTTTCTGGTATGGAGG 60.444 50.000 0.00 0.00 34.60 4.30
2147 2357 3.813443 CCCTCACATCTTTCTGGTATGG 58.187 50.000 0.00 0.00 0.00 2.74
2149 2359 2.846206 TGCCCTCACATCTTTCTGGTAT 59.154 45.455 0.00 0.00 0.00 2.73
2163 2376 1.466856 GTTGCAGATCAATGCCCTCA 58.533 50.000 4.64 0.00 45.91 3.86
2215 2428 1.750778 AGGTATTTTGCAGCGGAATGG 59.249 47.619 3.87 0.00 0.00 3.16
2221 2434 3.611433 GCTGAGGTATTTTGCAGCG 57.389 52.632 0.00 0.00 43.43 5.18
2236 2449 2.094130 TCTGTCAGAGAGAAGCATGCTG 60.094 50.000 23.48 7.82 0.00 4.41
2237 2450 2.177734 TCTGTCAGAGAGAAGCATGCT 58.822 47.619 16.30 16.30 0.00 3.79
2243 2456 6.516718 TGGTAAGTTTTCTGTCAGAGAGAAG 58.483 40.000 9.81 0.00 31.17 2.85
2245 2458 6.479972 TTGGTAAGTTTTCTGTCAGAGAGA 57.520 37.500 2.12 0.00 30.18 3.10
2246 2459 7.410485 GTTTTGGTAAGTTTTCTGTCAGAGAG 58.590 38.462 2.12 0.00 30.18 3.20
2286 2499 5.620738 TTTGGAACCAAATTTGTCCATGA 57.379 34.783 23.78 15.89 40.51 3.07
2312 2525 1.064166 CCAGCCAATCTTCCTGATGGT 60.064 52.381 0.00 0.00 35.21 3.55
2315 2528 2.781757 TCATCCAGCCAATCTTCCTGAT 59.218 45.455 0.00 0.00 36.89 2.90
2316 2529 2.199208 TCATCCAGCCAATCTTCCTGA 58.801 47.619 0.00 0.00 0.00 3.86
2318 2531 2.309755 TGTTCATCCAGCCAATCTTCCT 59.690 45.455 0.00 0.00 0.00 3.36
2349 2562 1.224075 CATGAGCACCAGGATAAGCG 58.776 55.000 0.00 0.00 0.00 4.68
2350 2563 1.602311 CCATGAGCACCAGGATAAGC 58.398 55.000 0.00 0.00 0.00 3.09
2370 2583 2.063378 GTGAGGAGGGCAGAGAGGG 61.063 68.421 0.00 0.00 0.00 4.30
2385 2598 6.660521 AGCAATGGAAATCATGTAGAAAGTGA 59.339 34.615 0.00 0.00 35.99 3.41
2395 2608 3.119388 ACGGTTGAGCAATGGAAATCATG 60.119 43.478 0.00 0.00 35.99 3.07
2398 2611 3.487544 GCTACGGTTGAGCAATGGAAATC 60.488 47.826 0.00 0.00 39.84 2.17
2404 2617 1.060937 GCGCTACGGTTGAGCAATG 59.939 57.895 12.61 0.00 40.09 2.82
2405 2618 2.106683 GGCGCTACGGTTGAGCAAT 61.107 57.895 18.03 0.00 40.09 3.56
2416 2629 1.394917 CACAATCTTGTCTGGCGCTAC 59.605 52.381 7.64 4.10 39.91 3.58
2420 2633 1.133253 CGCACAATCTTGTCTGGCG 59.867 57.895 10.51 10.51 42.02 5.69
2421 2634 0.874390 TTCGCACAATCTTGTCTGGC 59.126 50.000 0.00 0.00 39.91 4.85
2422 2635 2.146342 ACTTCGCACAATCTTGTCTGG 58.854 47.619 0.00 0.00 39.91 3.86
2424 2637 3.372206 GCATACTTCGCACAATCTTGTCT 59.628 43.478 0.00 0.00 39.91 3.41
2425 2638 3.485877 GGCATACTTCGCACAATCTTGTC 60.486 47.826 0.00 0.00 39.91 3.18
2426 2639 2.420022 GGCATACTTCGCACAATCTTGT 59.580 45.455 0.00 0.00 43.36 3.16
2427 2640 2.419673 TGGCATACTTCGCACAATCTTG 59.580 45.455 0.00 0.00 0.00 3.02
2428 2641 2.710377 TGGCATACTTCGCACAATCTT 58.290 42.857 0.00 0.00 0.00 2.40
2430 2643 2.677836 TCTTGGCATACTTCGCACAATC 59.322 45.455 0.00 0.00 0.00 2.67
2431 2644 2.420022 GTCTTGGCATACTTCGCACAAT 59.580 45.455 0.00 0.00 0.00 2.71
2432 2645 1.804151 GTCTTGGCATACTTCGCACAA 59.196 47.619 0.00 0.00 0.00 3.33
2459 2676 3.546218 GCTCACAGTCAGAAAACGAAACC 60.546 47.826 0.00 0.00 0.00 3.27
2470 2687 0.234106 CAAACAGCGCTCACAGTCAG 59.766 55.000 7.13 0.00 0.00 3.51
2473 2690 0.250467 ATCCAAACAGCGCTCACAGT 60.250 50.000 7.13 0.00 0.00 3.55
2475 2692 2.177394 TAATCCAAACAGCGCTCACA 57.823 45.000 7.13 0.00 0.00 3.58
2483 2700 8.618702 AGATCATCAGCTTATAATCCAAACAG 57.381 34.615 0.00 0.00 0.00 3.16
2504 2721 4.141937 TGGACAACATAGGCAGTGTAGATC 60.142 45.833 0.00 0.00 0.00 2.75
2517 2734 3.199442 TCCCTTCCTCTGGACAACATA 57.801 47.619 0.00 0.00 0.00 2.29
2523 2740 0.107459 GTGCATCCCTTCCTCTGGAC 60.107 60.000 0.00 0.00 32.36 4.02
2528 2745 3.567397 TCTACTAGTGCATCCCTTCCTC 58.433 50.000 5.39 0.00 0.00 3.71
2531 2748 5.586643 CCTTTTTCTACTAGTGCATCCCTTC 59.413 44.000 5.39 0.00 0.00 3.46
2533 2750 4.080299 CCCTTTTTCTACTAGTGCATCCCT 60.080 45.833 5.39 0.00 0.00 4.20
2536 2753 3.628032 GGCCCTTTTTCTACTAGTGCATC 59.372 47.826 5.39 0.00 0.00 3.91
2537 2754 3.267031 AGGCCCTTTTTCTACTAGTGCAT 59.733 43.478 5.39 0.00 0.00 3.96
2538 2755 2.642807 AGGCCCTTTTTCTACTAGTGCA 59.357 45.455 5.39 0.00 0.00 4.57
2539 2756 3.351794 AGGCCCTTTTTCTACTAGTGC 57.648 47.619 5.39 0.00 0.00 4.40
2540 2757 6.415573 ACAATAGGCCCTTTTTCTACTAGTG 58.584 40.000 5.39 0.00 34.03 2.74
2541 2758 6.638021 ACAATAGGCCCTTTTTCTACTAGT 57.362 37.500 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.