Multiple sequence alignment - TraesCS7A01G486800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G486800 chr7A 100.000 4526 0 0 1 4526 677698218 677702743 0.000000e+00 8359.0
1 TraesCS7A01G486800 chr7A 88.177 203 22 2 4187 4388 712997994 712998195 1.630000e-59 241.0
2 TraesCS7A01G486800 chr7A 87.805 205 23 2 4185 4388 713041481 713041684 5.850000e-59 239.0
3 TraesCS7A01G486800 chr7D 90.227 3264 162 52 609 3762 586489501 586492717 0.000000e+00 4115.0
4 TraesCS7A01G486800 chr7D 94.242 330 15 4 3843 4172 586492745 586493070 6.760000e-138 501.0
5 TraesCS7A01G486800 chr7D 89.928 139 9 4 4392 4526 586493069 586493206 1.670000e-39 174.0
6 TraesCS7A01G486800 chr7B 93.823 1797 86 15 2396 4185 656518233 656520011 0.000000e+00 2680.0
7 TraesCS7A01G486800 chr7B 93.821 1489 71 7 924 2398 656516629 656518110 0.000000e+00 2220.0
8 TraesCS7A01G486800 chr7B 88.037 326 24 8 607 927 656516287 656516602 5.530000e-99 372.0
9 TraesCS7A01G486800 chr7B 87.805 205 24 1 4185 4388 632838123 632837919 5.850000e-59 239.0
10 TraesCS7A01G486800 chr7B 91.304 138 7 4 4388 4522 656519996 656520131 2.780000e-42 183.0
11 TraesCS7A01G486800 chr3A 95.588 204 9 0 4185 4388 614461558 614461761 1.210000e-85 327.0
12 TraesCS7A01G486800 chr4A 93.532 201 13 0 4188 4388 405951250 405951050 2.650000e-77 300.0
13 TraesCS7A01G486800 chr2A 89.756 205 20 1 4185 4388 150481148 150481352 1.250000e-65 261.0
14 TraesCS7A01G486800 chr2A 87.379 206 24 2 4185 4388 40588772 40588977 7.570000e-58 235.0
15 TraesCS7A01G486800 chr2B 89.268 205 21 1 4185 4388 772337990 772337786 5.810000e-64 255.0
16 TraesCS7A01G486800 chr2B 86.364 88 8 2 480 566 606487385 606487301 4.820000e-15 93.5
17 TraesCS7A01G486800 chr1A 87.736 212 23 3 4185 4394 582548958 582548748 1.260000e-60 244.0
18 TraesCS7A01G486800 chr2D 79.874 159 26 5 59 215 57268052 57267898 1.330000e-20 111.0
19 TraesCS7A01G486800 chr5B 95.238 42 1 1 121 162 108549547 108549507 1.050000e-06 65.8
20 TraesCS7A01G486800 chr5A 97.143 35 0 1 119 153 390244918 390244885 1.760000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G486800 chr7A 677698218 677702743 4525 False 8359.000000 8359 100.000000 1 4526 1 chr7A.!!$F1 4525
1 TraesCS7A01G486800 chr7D 586489501 586493206 3705 False 1596.666667 4115 91.465667 609 4526 3 chr7D.!!$F1 3917
2 TraesCS7A01G486800 chr7B 656516287 656520131 3844 False 1363.750000 2680 91.746250 607 4522 4 chr7B.!!$F1 3915

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
514 515 0.037734 GGGTTGAATCCTCACCGGTT 59.962 55.000 2.97 0.00 0.00 4.44 F
652 653 0.250338 AAGTGAACAACGAGGAGCCC 60.250 55.000 0.00 0.00 0.00 5.19 F
1191 1242 0.252103 TCAGGGGTAGGCTCGTTCTT 60.252 55.000 0.00 0.00 0.00 2.52 F
1407 1458 1.164411 TGCAAGTGCCTTACATTCCG 58.836 50.000 0.00 0.00 41.18 4.30 F
2024 2088 1.536709 CCTTTGTGGTGCTTGCAACTC 60.537 52.381 12.07 8.83 0.00 3.01 F
2255 2333 2.575735 TCAACTATCTCATGGGGTTGCA 59.424 45.455 7.99 0.00 37.67 4.08 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1663 1718 2.232941 AGCCTGATTTGCACATTTGAGG 59.767 45.455 0.00 0.00 0.00 3.86 R
2249 2327 2.497273 ACAGGAAATAAGGCATGCAACC 59.503 45.455 21.36 10.83 0.00 3.77 R
3006 3244 0.405198 ATCCACATGGTGCAACTGGA 59.595 50.000 13.13 13.13 36.74 3.86 R
3358 3596 3.833732 AGGCTCTGGAACACGATATCTA 58.166 45.455 0.34 0.00 0.00 1.98 R
3426 3664 0.317770 ACAAAATGCAACTGCCGACG 60.318 50.000 0.00 0.00 41.18 5.12 R
4251 4490 0.040514 CGAGCGCATAGTCTGGAGAG 60.041 60.000 11.47 0.00 0.00 3.20 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
69 70 4.649088 AAAAAGCGGTAATATTCTGCCC 57.351 40.909 12.35 1.03 37.86 5.36
70 71 3.290948 AAAGCGGTAATATTCTGCCCA 57.709 42.857 12.35 0.00 37.86 5.36
71 72 3.290948 AAGCGGTAATATTCTGCCCAA 57.709 42.857 12.35 0.00 37.86 4.12
72 73 3.508845 AGCGGTAATATTCTGCCCAAT 57.491 42.857 12.35 0.00 37.86 3.16
73 74 3.832527 AGCGGTAATATTCTGCCCAATT 58.167 40.909 12.35 0.00 37.86 2.32
74 75 4.215109 AGCGGTAATATTCTGCCCAATTT 58.785 39.130 12.35 0.00 37.86 1.82
75 76 4.649218 AGCGGTAATATTCTGCCCAATTTT 59.351 37.500 12.35 0.00 37.86 1.82
76 77 5.128663 AGCGGTAATATTCTGCCCAATTTTT 59.871 36.000 12.35 0.00 37.86 1.94
77 78 5.234116 GCGGTAATATTCTGCCCAATTTTTG 59.766 40.000 0.00 0.00 0.00 2.44
78 79 5.234116 CGGTAATATTCTGCCCAATTTTTGC 59.766 40.000 0.00 0.00 0.00 3.68
79 80 5.234116 GGTAATATTCTGCCCAATTTTTGCG 59.766 40.000 0.00 0.00 0.00 4.85
80 81 4.734398 ATATTCTGCCCAATTTTTGCGA 57.266 36.364 0.00 0.00 0.00 5.10
81 82 2.898729 TTCTGCCCAATTTTTGCGAA 57.101 40.000 0.00 0.00 0.00 4.70
82 83 2.898729 TCTGCCCAATTTTTGCGAAA 57.101 40.000 0.00 0.00 0.00 3.46
83 84 3.399440 TCTGCCCAATTTTTGCGAAAT 57.601 38.095 0.00 0.00 0.00 2.17
84 85 3.065655 TCTGCCCAATTTTTGCGAAATG 58.934 40.909 0.00 0.00 0.00 2.32
85 86 2.807392 CTGCCCAATTTTTGCGAAATGT 59.193 40.909 0.00 0.00 0.00 2.71
86 87 3.209410 TGCCCAATTTTTGCGAAATGTT 58.791 36.364 0.00 0.00 0.00 2.71
87 88 3.003068 TGCCCAATTTTTGCGAAATGTTG 59.997 39.130 13.99 13.99 0.00 3.33
88 89 3.003171 GCCCAATTTTTGCGAAATGTTGT 59.997 39.130 17.24 0.00 0.00 3.32
89 90 4.771360 CCCAATTTTTGCGAAATGTTGTC 58.229 39.130 17.24 0.00 0.00 3.18
90 91 4.272018 CCCAATTTTTGCGAAATGTTGTCA 59.728 37.500 17.24 0.00 0.00 3.58
91 92 5.433855 CCAATTTTTGCGAAATGTTGTCAG 58.566 37.500 17.24 5.52 0.00 3.51
92 93 5.233902 CCAATTTTTGCGAAATGTTGTCAGA 59.766 36.000 17.24 0.00 0.00 3.27
93 94 6.238049 CCAATTTTTGCGAAATGTTGTCAGAA 60.238 34.615 17.24 0.00 0.00 3.02
94 95 6.900568 ATTTTTGCGAAATGTTGTCAGAAA 57.099 29.167 0.00 0.00 0.00 2.52
95 96 6.712241 TTTTTGCGAAATGTTGTCAGAAAA 57.288 29.167 0.00 0.00 0.00 2.29
96 97 6.900568 TTTTGCGAAATGTTGTCAGAAAAT 57.099 29.167 0.00 0.00 0.00 1.82
97 98 7.993821 TTTTGCGAAATGTTGTCAGAAAATA 57.006 28.000 0.00 0.00 0.00 1.40
98 99 7.993821 TTTGCGAAATGTTGTCAGAAAATAA 57.006 28.000 0.00 0.00 0.00 1.40
99 100 7.993821 TTGCGAAATGTTGTCAGAAAATAAA 57.006 28.000 0.00 0.00 0.00 1.40
100 101 8.586570 TTGCGAAATGTTGTCAGAAAATAAAT 57.413 26.923 0.00 0.00 0.00 1.40
101 102 8.586570 TGCGAAATGTTGTCAGAAAATAAATT 57.413 26.923 0.00 0.00 0.00 1.82
102 103 9.039870 TGCGAAATGTTGTCAGAAAATAAATTT 57.960 25.926 0.00 0.00 0.00 1.82
103 104 9.862585 GCGAAATGTTGTCAGAAAATAAATTTT 57.137 25.926 0.00 0.37 42.24 1.82
158 159 8.514594 TCAAGAAAACAATACTAAGCATTCTGG 58.485 33.333 0.00 0.00 0.00 3.86
159 160 8.514594 CAAGAAAACAATACTAAGCATTCTGGA 58.485 33.333 0.00 0.00 0.00 3.86
160 161 8.635765 AGAAAACAATACTAAGCATTCTGGAA 57.364 30.769 0.00 0.00 0.00 3.53
161 162 9.077885 AGAAAACAATACTAAGCATTCTGGAAA 57.922 29.630 0.00 0.00 0.00 3.13
162 163 9.346725 GAAAACAATACTAAGCATTCTGGAAAG 57.653 33.333 0.00 0.00 0.00 2.62
163 164 6.442513 ACAATACTAAGCATTCTGGAAAGC 57.557 37.500 2.82 2.82 35.47 3.51
164 165 6.183347 ACAATACTAAGCATTCTGGAAAGCT 58.817 36.000 7.16 7.16 45.87 3.74
169 170 3.930634 AGCATTCTGGAAAGCTTCAAC 57.069 42.857 0.00 0.00 41.91 3.18
170 171 3.494332 AGCATTCTGGAAAGCTTCAACT 58.506 40.909 0.00 0.00 41.91 3.16
171 172 3.893813 AGCATTCTGGAAAGCTTCAACTT 59.106 39.130 0.00 0.00 41.91 2.66
172 173 4.343239 AGCATTCTGGAAAGCTTCAACTTT 59.657 37.500 0.00 0.00 41.91 2.66
173 174 5.052481 GCATTCTGGAAAGCTTCAACTTTT 58.948 37.500 0.00 0.00 39.93 2.27
174 175 5.525012 GCATTCTGGAAAGCTTCAACTTTTT 59.475 36.000 0.00 0.00 39.93 1.94
245 246 8.939201 AAAAATTTCAAAATTCCCGCATTTTT 57.061 23.077 1.43 0.00 37.62 1.94
343 344 8.702163 ACATTATCGTCAAATTTCATTTTCCC 57.298 30.769 0.00 0.00 0.00 3.97
344 345 7.763985 ACATTATCGTCAAATTTCATTTTCCCC 59.236 33.333 0.00 0.00 0.00 4.81
345 346 5.736951 ATCGTCAAATTTCATTTTCCCCA 57.263 34.783 0.00 0.00 0.00 4.96
346 347 5.537300 TCGTCAAATTTCATTTTCCCCAA 57.463 34.783 0.00 0.00 0.00 4.12
347 348 5.918608 TCGTCAAATTTCATTTTCCCCAAA 58.081 33.333 0.00 0.00 0.00 3.28
348 349 6.529220 TCGTCAAATTTCATTTTCCCCAAAT 58.471 32.000 0.00 0.00 35.24 2.32
349 350 6.995091 TCGTCAAATTTCATTTTCCCCAAATT 59.005 30.769 0.00 0.00 32.24 1.82
350 351 7.500559 TCGTCAAATTTCATTTTCCCCAAATTT 59.499 29.630 0.00 0.00 38.41 1.82
351 352 8.778358 CGTCAAATTTCATTTTCCCCAAATTTA 58.222 29.630 0.00 0.00 36.66 1.40
359 360 9.859152 TTCATTTTCCCCAAATTTAGAATTTGT 57.141 25.926 19.13 2.82 37.32 2.83
360 361 9.859152 TCATTTTCCCCAAATTTAGAATTTGTT 57.141 25.926 19.13 0.49 37.32 2.83
438 439 8.617761 TTTCTCTGCAATTTTTCAATTTTTGC 57.382 26.923 0.00 0.00 42.23 3.68
439 440 7.556733 TCTCTGCAATTTTTCAATTTTTGCT 57.443 28.000 7.37 0.00 42.34 3.91
440 441 7.411274 TCTCTGCAATTTTTCAATTTTTGCTG 58.589 30.769 7.37 6.92 42.34 4.41
441 442 7.280428 TCTCTGCAATTTTTCAATTTTTGCTGA 59.720 29.630 12.68 12.68 43.94 4.26
442 443 7.411274 TCTGCAATTTTTCAATTTTTGCTGAG 58.589 30.769 10.23 0.80 42.45 3.35
443 444 7.066043 TCTGCAATTTTTCAATTTTTGCTGAGT 59.934 29.630 10.23 0.00 42.45 3.41
444 445 6.967767 TGCAATTTTTCAATTTTTGCTGAGTG 59.032 30.769 7.37 0.00 42.34 3.51
445 446 6.415573 GCAATTTTTCAATTTTTGCTGAGTGG 59.584 34.615 0.00 0.00 39.56 4.00
446 447 5.482686 TTTTTCAATTTTTGCTGAGTGGC 57.517 34.783 0.00 0.00 0.00 5.01
447 448 4.405116 TTTCAATTTTTGCTGAGTGGCT 57.595 36.364 0.00 0.00 0.00 4.75
448 449 4.405116 TTCAATTTTTGCTGAGTGGCTT 57.595 36.364 0.00 0.00 0.00 4.35
449 450 3.719924 TCAATTTTTGCTGAGTGGCTTG 58.280 40.909 0.00 0.00 0.00 4.01
450 451 2.159327 ATTTTTGCTGAGTGGCTTGC 57.841 45.000 0.00 0.00 0.00 4.01
451 452 1.113788 TTTTTGCTGAGTGGCTTGCT 58.886 45.000 0.00 0.00 0.00 3.91
452 453 0.386476 TTTTGCTGAGTGGCTTGCTG 59.614 50.000 0.00 0.00 0.00 4.41
453 454 0.466007 TTTGCTGAGTGGCTTGCTGA 60.466 50.000 0.00 0.00 0.00 4.26
454 455 1.168407 TTGCTGAGTGGCTTGCTGAC 61.168 55.000 0.00 0.00 0.00 3.51
455 456 2.331132 GCTGAGTGGCTTGCTGACC 61.331 63.158 0.00 0.00 0.00 4.02
456 457 2.031012 TGAGTGGCTTGCTGACCG 59.969 61.111 0.00 0.00 0.00 4.79
457 458 2.743928 GAGTGGCTTGCTGACCGG 60.744 66.667 0.00 0.00 0.00 5.28
458 459 3.240134 GAGTGGCTTGCTGACCGGA 62.240 63.158 9.46 0.00 0.00 5.14
459 460 2.045926 GTGGCTTGCTGACCGGAT 60.046 61.111 9.46 0.00 0.00 4.18
460 461 2.046023 TGGCTTGCTGACCGGATG 60.046 61.111 9.46 0.00 0.00 3.51
461 462 2.268920 GGCTTGCTGACCGGATGA 59.731 61.111 9.46 0.00 0.00 2.92
462 463 1.153086 GGCTTGCTGACCGGATGAT 60.153 57.895 9.46 0.00 0.00 2.45
463 464 1.162800 GGCTTGCTGACCGGATGATC 61.163 60.000 9.46 0.00 0.00 2.92
464 465 0.462581 GCTTGCTGACCGGATGATCA 60.463 55.000 9.46 0.00 0.00 2.92
465 466 2.013563 GCTTGCTGACCGGATGATCAA 61.014 52.381 9.46 4.61 0.00 2.57
466 467 1.667724 CTTGCTGACCGGATGATCAAC 59.332 52.381 9.46 0.00 0.00 3.18
467 468 0.460109 TGCTGACCGGATGATCAACG 60.460 55.000 9.46 14.18 0.00 4.10
471 472 4.438346 CCGGATGATCAACGGGTC 57.562 61.111 26.01 9.08 43.69 4.46
472 473 1.520192 CCGGATGATCAACGGGTCA 59.480 57.895 26.01 0.00 43.69 4.02
473 474 0.107897 CCGGATGATCAACGGGTCAA 60.108 55.000 26.01 0.00 43.69 3.18
474 475 1.677518 CCGGATGATCAACGGGTCAAA 60.678 52.381 26.01 0.00 43.69 2.69
475 476 1.396996 CGGATGATCAACGGGTCAAAC 59.603 52.381 13.52 0.00 0.00 2.93
476 477 1.743394 GGATGATCAACGGGTCAAACC 59.257 52.381 0.00 0.00 37.60 3.27
485 486 4.174305 GGTCAAACCCAGGGTGTG 57.826 61.111 22.27 22.27 42.04 3.82
486 487 1.530655 GGTCAAACCCAGGGTGTGG 60.531 63.158 26.79 12.86 41.08 4.17
494 495 2.122729 CAGGGTGTGGAGAGGGGA 59.877 66.667 0.00 0.00 0.00 4.81
495 496 1.992277 CAGGGTGTGGAGAGGGGAG 60.992 68.421 0.00 0.00 0.00 4.30
496 497 2.689034 GGGTGTGGAGAGGGGAGG 60.689 72.222 0.00 0.00 0.00 4.30
497 498 2.689034 GGTGTGGAGAGGGGAGGG 60.689 72.222 0.00 0.00 0.00 4.30
498 499 2.122954 GTGTGGAGAGGGGAGGGT 59.877 66.667 0.00 0.00 0.00 4.34
499 500 1.539124 GTGTGGAGAGGGGAGGGTT 60.539 63.158 0.00 0.00 0.00 4.11
500 501 1.538876 TGTGGAGAGGGGAGGGTTG 60.539 63.158 0.00 0.00 0.00 3.77
501 502 1.229529 GTGGAGAGGGGAGGGTTGA 60.230 63.158 0.00 0.00 0.00 3.18
502 503 0.840722 GTGGAGAGGGGAGGGTTGAA 60.841 60.000 0.00 0.00 0.00 2.69
503 504 0.121197 TGGAGAGGGGAGGGTTGAAT 59.879 55.000 0.00 0.00 0.00 2.57
504 505 0.840617 GGAGAGGGGAGGGTTGAATC 59.159 60.000 0.00 0.00 0.00 2.52
505 506 0.840617 GAGAGGGGAGGGTTGAATCC 59.159 60.000 0.00 0.00 34.64 3.01
506 507 0.423544 AGAGGGGAGGGTTGAATCCT 59.576 55.000 0.00 0.00 35.80 3.24
512 513 1.991230 AGGGTTGAATCCTCACCGG 59.009 57.895 0.00 0.00 0.00 5.28
513 514 0.840722 AGGGTTGAATCCTCACCGGT 60.841 55.000 0.00 0.00 0.00 5.28
514 515 0.037734 GGGTTGAATCCTCACCGGTT 59.962 55.000 2.97 0.00 0.00 4.44
515 516 1.546998 GGGTTGAATCCTCACCGGTTT 60.547 52.381 2.97 0.00 0.00 3.27
516 517 2.235891 GGTTGAATCCTCACCGGTTTT 58.764 47.619 2.97 0.00 0.00 2.43
517 518 3.414269 GGTTGAATCCTCACCGGTTTTA 58.586 45.455 2.97 0.00 0.00 1.52
518 519 3.822167 GGTTGAATCCTCACCGGTTTTAA 59.178 43.478 2.97 0.00 0.00 1.52
519 520 4.082949 GGTTGAATCCTCACCGGTTTTAAG 60.083 45.833 2.97 0.00 0.00 1.85
520 521 4.627284 TGAATCCTCACCGGTTTTAAGA 57.373 40.909 2.97 0.00 0.00 2.10
521 522 4.575885 TGAATCCTCACCGGTTTTAAGAG 58.424 43.478 2.97 8.30 0.00 2.85
522 523 4.041198 TGAATCCTCACCGGTTTTAAGAGT 59.959 41.667 2.97 0.00 0.00 3.24
523 524 4.635699 ATCCTCACCGGTTTTAAGAGTT 57.364 40.909 2.97 0.00 0.00 3.01
524 525 3.999046 TCCTCACCGGTTTTAAGAGTTC 58.001 45.455 2.97 0.00 0.00 3.01
525 526 2.735134 CCTCACCGGTTTTAAGAGTTCG 59.265 50.000 2.97 0.00 0.00 3.95
526 527 2.735134 CTCACCGGTTTTAAGAGTTCGG 59.265 50.000 2.97 0.00 42.69 4.30
527 528 1.196127 CACCGGTTTTAAGAGTTCGGC 59.804 52.381 2.97 0.00 40.95 5.54
528 529 1.202675 ACCGGTTTTAAGAGTTCGGCA 60.203 47.619 0.00 0.00 40.95 5.69
529 530 2.081462 CCGGTTTTAAGAGTTCGGCAT 58.919 47.619 0.00 0.00 0.00 4.40
530 531 2.486592 CCGGTTTTAAGAGTTCGGCATT 59.513 45.455 0.00 0.00 0.00 3.56
531 532 3.488489 CGGTTTTAAGAGTTCGGCATTG 58.512 45.455 0.00 0.00 0.00 2.82
532 533 3.187637 CGGTTTTAAGAGTTCGGCATTGA 59.812 43.478 0.00 0.00 0.00 2.57
533 534 4.142687 CGGTTTTAAGAGTTCGGCATTGAT 60.143 41.667 0.00 0.00 0.00 2.57
534 535 5.619086 CGGTTTTAAGAGTTCGGCATTGATT 60.619 40.000 0.00 0.00 0.00 2.57
535 536 5.800438 GGTTTTAAGAGTTCGGCATTGATTC 59.200 40.000 0.00 0.00 0.00 2.52
536 537 6.349363 GGTTTTAAGAGTTCGGCATTGATTCT 60.349 38.462 0.00 0.00 0.00 2.40
537 538 6.817765 TTTAAGAGTTCGGCATTGATTCTT 57.182 33.333 0.00 0.00 0.00 2.52
538 539 7.915293 TTTAAGAGTTCGGCATTGATTCTTA 57.085 32.000 0.00 0.00 0.00 2.10
539 540 7.539712 TTAAGAGTTCGGCATTGATTCTTAG 57.460 36.000 0.00 0.00 31.64 2.18
540 541 5.344743 AGAGTTCGGCATTGATTCTTAGA 57.655 39.130 0.00 0.00 0.00 2.10
541 542 5.112686 AGAGTTCGGCATTGATTCTTAGAC 58.887 41.667 0.00 0.00 0.00 2.59
542 543 3.865745 AGTTCGGCATTGATTCTTAGACG 59.134 43.478 0.00 0.00 0.00 4.18
543 544 2.821546 TCGGCATTGATTCTTAGACGG 58.178 47.619 0.00 0.00 0.00 4.79
544 545 2.167693 TCGGCATTGATTCTTAGACGGT 59.832 45.455 0.00 0.00 0.00 4.83
545 546 3.382227 TCGGCATTGATTCTTAGACGGTA 59.618 43.478 0.00 0.00 0.00 4.02
546 547 4.038763 TCGGCATTGATTCTTAGACGGTAT 59.961 41.667 0.00 0.00 0.00 2.73
547 548 4.750098 CGGCATTGATTCTTAGACGGTATT 59.250 41.667 0.00 0.00 0.00 1.89
548 549 5.924254 CGGCATTGATTCTTAGACGGTATTA 59.076 40.000 0.00 0.00 0.00 0.98
549 550 6.590292 CGGCATTGATTCTTAGACGGTATTAT 59.410 38.462 0.00 0.00 0.00 1.28
550 551 7.758076 CGGCATTGATTCTTAGACGGTATTATA 59.242 37.037 0.00 0.00 0.00 0.98
551 552 9.088512 GGCATTGATTCTTAGACGGTATTATAG 57.911 37.037 0.00 0.00 0.00 1.31
552 553 9.640963 GCATTGATTCTTAGACGGTATTATAGT 57.359 33.333 0.00 0.00 0.00 2.12
556 557 9.961265 TGATTCTTAGACGGTATTATAGTTGTG 57.039 33.333 0.00 0.00 0.00 3.33
557 558 9.962783 GATTCTTAGACGGTATTATAGTTGTGT 57.037 33.333 0.00 0.00 0.00 3.72
562 563 9.709495 TTAGACGGTATTATAGTTGTGTTTTGT 57.291 29.630 0.00 0.00 0.00 2.83
564 565 9.362539 AGACGGTATTATAGTTGTGTTTTGTAG 57.637 33.333 0.00 0.00 0.00 2.74
565 566 9.357652 GACGGTATTATAGTTGTGTTTTGTAGA 57.642 33.333 0.00 0.00 0.00 2.59
566 567 9.880157 ACGGTATTATAGTTGTGTTTTGTAGAT 57.120 29.630 0.00 0.00 0.00 1.98
572 573 9.953565 TTATAGTTGTGTTTTGTAGATTAGGCT 57.046 29.630 0.00 0.00 0.00 4.58
574 575 7.907214 AGTTGTGTTTTGTAGATTAGGCTAG 57.093 36.000 0.00 0.00 0.00 3.42
575 576 6.879458 AGTTGTGTTTTGTAGATTAGGCTAGG 59.121 38.462 0.00 0.00 0.00 3.02
576 577 5.741011 TGTGTTTTGTAGATTAGGCTAGGG 58.259 41.667 0.00 0.00 0.00 3.53
577 578 5.249852 TGTGTTTTGTAGATTAGGCTAGGGT 59.750 40.000 0.00 0.00 0.00 4.34
578 579 6.441284 TGTGTTTTGTAGATTAGGCTAGGGTA 59.559 38.462 0.00 0.00 0.00 3.69
579 580 6.985059 GTGTTTTGTAGATTAGGCTAGGGTAG 59.015 42.308 0.00 0.00 0.00 3.18
580 581 6.099269 TGTTTTGTAGATTAGGCTAGGGTAGG 59.901 42.308 0.00 0.00 0.00 3.18
586 587 3.625099 GGCTAGGGTAGGCGTTGA 58.375 61.111 0.00 0.00 41.69 3.18
587 588 1.442148 GGCTAGGGTAGGCGTTGAG 59.558 63.158 0.00 0.00 41.69 3.02
588 589 1.041447 GGCTAGGGTAGGCGTTGAGA 61.041 60.000 0.00 0.00 41.69 3.27
589 590 0.386113 GCTAGGGTAGGCGTTGAGAG 59.614 60.000 0.00 0.00 0.00 3.20
590 591 1.765230 CTAGGGTAGGCGTTGAGAGT 58.235 55.000 0.00 0.00 0.00 3.24
591 592 2.100989 CTAGGGTAGGCGTTGAGAGTT 58.899 52.381 0.00 0.00 0.00 3.01
592 593 0.608640 AGGGTAGGCGTTGAGAGTTG 59.391 55.000 0.00 0.00 0.00 3.16
593 594 0.606604 GGGTAGGCGTTGAGAGTTGA 59.393 55.000 0.00 0.00 0.00 3.18
594 595 1.404315 GGGTAGGCGTTGAGAGTTGAG 60.404 57.143 0.00 0.00 0.00 3.02
595 596 1.544691 GGTAGGCGTTGAGAGTTGAGA 59.455 52.381 0.00 0.00 0.00 3.27
596 597 2.166664 GGTAGGCGTTGAGAGTTGAGAT 59.833 50.000 0.00 0.00 0.00 2.75
597 598 3.380637 GGTAGGCGTTGAGAGTTGAGATA 59.619 47.826 0.00 0.00 0.00 1.98
598 599 4.038162 GGTAGGCGTTGAGAGTTGAGATAT 59.962 45.833 0.00 0.00 0.00 1.63
599 600 4.052159 AGGCGTTGAGAGTTGAGATATG 57.948 45.455 0.00 0.00 0.00 1.78
600 601 2.541762 GGCGTTGAGAGTTGAGATATGC 59.458 50.000 0.00 0.00 0.00 3.14
601 602 3.190079 GCGTTGAGAGTTGAGATATGCA 58.810 45.455 0.00 0.00 0.00 3.96
602 603 3.000724 GCGTTGAGAGTTGAGATATGCAC 59.999 47.826 0.00 0.00 0.00 4.57
603 604 4.428209 CGTTGAGAGTTGAGATATGCACT 58.572 43.478 0.00 0.00 0.00 4.40
604 605 4.867047 CGTTGAGAGTTGAGATATGCACTT 59.133 41.667 0.00 0.00 0.00 3.16
605 606 5.005203 CGTTGAGAGTTGAGATATGCACTTC 59.995 44.000 0.00 0.00 0.00 3.01
619 620 5.665916 ATGCACTTCTTTTAGGGGAAATG 57.334 39.130 0.00 0.00 0.00 2.32
648 649 2.589798 ACGAAAGTGAACAACGAGGA 57.410 45.000 0.00 0.00 46.97 3.71
649 650 2.470821 ACGAAAGTGAACAACGAGGAG 58.529 47.619 0.00 0.00 46.97 3.69
650 651 1.192534 CGAAAGTGAACAACGAGGAGC 59.807 52.381 0.00 0.00 0.00 4.70
651 652 1.531578 GAAAGTGAACAACGAGGAGCC 59.468 52.381 0.00 0.00 0.00 4.70
652 653 0.250338 AAGTGAACAACGAGGAGCCC 60.250 55.000 0.00 0.00 0.00 5.19
653 654 1.070786 GTGAACAACGAGGAGCCCA 59.929 57.895 0.00 0.00 0.00 5.36
654 655 0.951040 GTGAACAACGAGGAGCCCAG 60.951 60.000 0.00 0.00 0.00 4.45
655 656 1.376037 GAACAACGAGGAGCCCAGG 60.376 63.158 0.00 0.00 0.00 4.45
673 679 1.520787 GACCACCGTTATCAGCCCG 60.521 63.158 0.00 0.00 0.00 6.13
695 701 3.625649 AGCCCAAACAAAGCAAAGAAA 57.374 38.095 0.00 0.00 0.00 2.52
697 703 4.331108 AGCCCAAACAAAGCAAAGAAAAA 58.669 34.783 0.00 0.00 0.00 1.94
849 855 2.897762 GCCCGTTGTTCCCCTGGTA 61.898 63.158 0.00 0.00 0.00 3.25
852 858 0.321298 CCGTTGTTCCCCTGGTACTG 60.321 60.000 0.00 0.00 0.00 2.74
1074 1125 3.617531 CGAGGTCTGTATATGCCCAATCC 60.618 52.174 0.00 0.00 0.00 3.01
1104 1155 3.181503 CCATGAGCTTTCCATTCAGTTCG 60.182 47.826 0.00 0.00 0.00 3.95
1109 1160 3.067106 GCTTTCCATTCAGTTCGTCTCA 58.933 45.455 0.00 0.00 0.00 3.27
1142 1193 4.264460 AGGGAGTAGATTCGATTCATGC 57.736 45.455 9.78 1.27 0.00 4.06
1191 1242 0.252103 TCAGGGGTAGGCTCGTTCTT 60.252 55.000 0.00 0.00 0.00 2.52
1236 1287 2.337361 TTCGGTGAGCTCGAAGTCA 58.663 52.632 9.64 0.00 40.99 3.41
1275 1326 3.339141 GGGCAAGCTGAAGTATATAGGC 58.661 50.000 0.00 0.00 0.00 3.93
1314 1365 2.561419 CCTGAAAGAAGACCCGTCTACA 59.439 50.000 0.00 0.00 39.39 2.74
1398 1449 2.045926 GTCCGGATGCAAGTGCCT 60.046 61.111 7.81 0.00 41.18 4.75
1407 1458 1.164411 TGCAAGTGCCTTACATTCCG 58.836 50.000 0.00 0.00 41.18 4.30
1434 1485 5.745312 TTCTTGCTTTCAGAGAGGTATGA 57.255 39.130 0.00 0.00 0.00 2.15
1446 1497 7.241628 TCAGAGAGGTATGACACACCATATAT 58.758 38.462 5.53 0.00 38.62 0.86
1447 1498 7.177392 TCAGAGAGGTATGACACACCATATATG 59.823 40.741 5.53 5.68 38.62 1.78
1448 1499 6.042638 AGAGGTATGACACACCATATATGC 57.957 41.667 5.53 0.00 38.62 3.14
1452 1507 5.997746 GGTATGACACACCATATATGCACTT 59.002 40.000 7.24 0.00 36.01 3.16
1454 1509 6.624352 ATGACACACCATATATGCACTTTC 57.376 37.500 7.24 1.83 0.00 2.62
1460 1515 5.207768 CACCATATATGCACTTTCTTTCGC 58.792 41.667 7.24 0.00 0.00 4.70
1603 1658 5.401531 TCTTGGACTACTGTTGTATCACC 57.598 43.478 0.00 0.00 0.00 4.02
1619 1674 5.995282 TGTATCACCGAACAATCTTGTCTTT 59.005 36.000 0.00 0.00 41.31 2.52
1630 1685 7.275888 ACAATCTTGTCTTTACTTGCATCAA 57.724 32.000 0.00 0.00 36.50 2.57
1663 1718 9.654663 AAAGTTTATTATGTCTGGACAGTAGTC 57.345 33.333 9.33 0.00 45.48 2.59
2024 2088 1.536709 CCTTTGTGGTGCTTGCAACTC 60.537 52.381 12.07 8.83 0.00 3.01
2037 2101 5.812642 TGCTTGCAACTCTACTAATCTTAGC 59.187 40.000 0.00 0.00 34.09 3.09
2249 2327 9.211410 AGGATATATTCTCAACTATCTCATGGG 57.789 37.037 0.00 0.00 0.00 4.00
2255 2333 2.575735 TCAACTATCTCATGGGGTTGCA 59.424 45.455 7.99 0.00 37.67 4.08
2299 2377 3.364366 GCCTGTGATGACGAGAACAAAAG 60.364 47.826 0.00 0.00 0.00 2.27
2305 2383 5.408604 GTGATGACGAGAACAAAAGGTACAT 59.591 40.000 0.00 0.00 0.00 2.29
2316 2394 7.883311 AGAACAAAAGGTACATTACTATGCAGT 59.117 33.333 0.00 0.00 38.91 4.40
2327 2405 7.559486 ACATTACTATGCAGTCAGAGAATTCA 58.441 34.615 8.44 0.00 35.23 2.57
2439 2645 6.350110 GCCAGTGCATTTTCTAAGGTTTATCA 60.350 38.462 0.00 0.00 37.47 2.15
2542 2748 8.850156 ACTTATGCACTCTTTACAGTTTTCAAT 58.150 29.630 0.00 0.00 0.00 2.57
2694 2921 8.675705 TCTGTGTTTATGAAAGAATGAGTTCA 57.324 30.769 0.00 0.00 38.09 3.18
2717 2944 4.938575 TTGTAATCCCTGAAGCCCTTAA 57.061 40.909 0.00 0.00 0.00 1.85
2721 2948 2.806945 TCCCTGAAGCCCTTAACATG 57.193 50.000 0.00 0.00 0.00 3.21
2751 2978 7.985184 TCCTGGTGATACAATACATCTTGTTAC 59.015 37.037 0.00 0.00 39.88 2.50
2989 3227 9.498176 GTTGTACTTTTAGGGAAGACTAAATCA 57.502 33.333 0.00 0.00 41.19 2.57
3358 3596 3.441101 TGGGATAGTGAAGTACTGCTGT 58.559 45.455 1.64 0.66 40.65 4.40
3426 3664 9.862371 AGAATATCATATATCGAGTTTCCACAC 57.138 33.333 0.00 0.00 0.00 3.82
3462 3700 6.629128 CATTTTGTGTACTAATTGGCCATCA 58.371 36.000 6.09 0.00 0.00 3.07
3505 3743 4.903045 TCGAAGGTATTCCTCCAAAAGT 57.097 40.909 0.00 0.00 44.35 2.66
3547 3785 3.569701 ACAAGATTCGACAATGGCAAACT 59.430 39.130 0.00 0.00 0.00 2.66
3558 3796 0.847373 TGGCAAACTGTACCCTTGGA 59.153 50.000 0.00 0.00 0.00 3.53
3567 3805 2.771943 CTGTACCCTTGGATAGCCTTCA 59.228 50.000 0.00 0.00 34.31 3.02
3582 3820 3.262915 AGCCTTCACATCTTTCTAGCTGT 59.737 43.478 0.00 0.00 31.12 4.40
3606 3844 8.303156 TGTTGTGAAATTTGAGAAAGAAACTGA 58.697 29.630 0.00 0.00 0.00 3.41
3632 3870 3.153919 GCATTGGAACCTCAAGTAACCA 58.846 45.455 0.00 0.00 34.57 3.67
3633 3871 3.572255 GCATTGGAACCTCAAGTAACCAA 59.428 43.478 0.00 0.00 43.93 3.67
3803 4042 3.560025 GCAAGAAGAATCAAGGACCTGGA 60.560 47.826 0.00 0.00 0.00 3.86
3811 4050 7.251321 AGAATCAAGGACCTGGATATACATC 57.749 40.000 12.07 5.68 0.00 3.06
3866 4105 5.287226 CACCGGTATATCTTGGAGTACAAC 58.713 45.833 6.87 0.00 34.76 3.32
4005 4244 8.212259 TCAAAAGGATTTCCCCAATTATCAAA 57.788 30.769 0.00 0.00 37.28 2.69
4049 4288 5.355350 ACTTCAGCAAAAGCACTGGTATATC 59.645 40.000 0.00 0.00 34.57 1.63
4050 4289 5.102953 TCAGCAAAAGCACTGGTATATCT 57.897 39.130 0.00 0.00 34.57 1.98
4109 4348 2.076863 ACTGCCGTAAATCTCAAGCAC 58.923 47.619 0.00 0.00 0.00 4.40
4158 4397 2.662866 TCTCGAAGGGATGTTACCGAT 58.337 47.619 0.00 0.00 0.00 4.18
4159 4398 2.621998 TCTCGAAGGGATGTTACCGATC 59.378 50.000 0.00 0.00 0.00 3.69
4160 4399 2.361119 CTCGAAGGGATGTTACCGATCA 59.639 50.000 0.00 0.00 0.00 2.92
4216 4455 6.442513 GCTTCAAGCCATGTAATCTACTTT 57.557 37.500 0.00 0.00 34.48 2.66
4217 4456 6.261118 GCTTCAAGCCATGTAATCTACTTTG 58.739 40.000 0.00 0.00 34.48 2.77
4218 4457 5.818136 TCAAGCCATGTAATCTACTTTGC 57.182 39.130 0.00 0.00 0.00 3.68
4219 4458 5.500234 TCAAGCCATGTAATCTACTTTGCT 58.500 37.500 0.00 0.00 36.71 3.91
4220 4459 5.945784 TCAAGCCATGTAATCTACTTTGCTT 59.054 36.000 5.64 5.64 41.95 3.91
4221 4460 5.824904 AGCCATGTAATCTACTTTGCTTG 57.175 39.130 0.00 0.00 33.08 4.01
4222 4461 4.096984 AGCCATGTAATCTACTTTGCTTGC 59.903 41.667 0.00 0.00 33.08 4.01
4223 4462 4.096984 GCCATGTAATCTACTTTGCTTGCT 59.903 41.667 0.00 0.00 0.00 3.91
4224 4463 5.731686 GCCATGTAATCTACTTTGCTTGCTC 60.732 44.000 0.00 0.00 0.00 4.26
4225 4464 5.220931 CCATGTAATCTACTTTGCTTGCTCC 60.221 44.000 0.00 0.00 0.00 4.70
4226 4465 3.932710 TGTAATCTACTTTGCTTGCTCCG 59.067 43.478 0.00 0.00 0.00 4.63
4227 4466 2.770164 ATCTACTTTGCTTGCTCCGT 57.230 45.000 0.00 0.00 0.00 4.69
4228 4467 1.795768 TCTACTTTGCTTGCTCCGTG 58.204 50.000 0.00 0.00 0.00 4.94
4229 4468 0.166814 CTACTTTGCTTGCTCCGTGC 59.833 55.000 0.00 0.00 43.25 5.34
4230 4469 0.250295 TACTTTGCTTGCTCCGTGCT 60.250 50.000 0.00 0.00 43.37 4.40
4231 4470 1.081641 CTTTGCTTGCTCCGTGCTG 60.082 57.895 0.00 0.00 43.37 4.41
4232 4471 3.198236 TTTGCTTGCTCCGTGCTGC 62.198 57.895 0.00 0.00 43.37 5.25
4233 4472 4.631247 TGCTTGCTCCGTGCTGCT 62.631 61.111 0.00 0.00 43.37 4.24
4234 4473 3.360340 GCTTGCTCCGTGCTGCTT 61.360 61.111 0.00 0.00 43.37 3.91
4235 4474 2.912624 GCTTGCTCCGTGCTGCTTT 61.913 57.895 0.00 0.00 43.37 3.51
4236 4475 1.208614 CTTGCTCCGTGCTGCTTTC 59.791 57.895 0.00 0.00 43.37 2.62
4237 4476 2.504461 CTTGCTCCGTGCTGCTTTCG 62.504 60.000 0.00 3.47 43.37 3.46
4238 4477 3.793144 GCTCCGTGCTGCTTTCGG 61.793 66.667 19.21 19.21 44.76 4.30
4239 4478 3.793144 CTCCGTGCTGCTTTCGGC 61.793 66.667 20.00 0.00 43.35 5.54
4242 4481 4.093952 CGTGCTGCTTTCGGCCTG 62.094 66.667 0.00 0.00 43.94 4.85
4243 4482 4.410743 GTGCTGCTTTCGGCCTGC 62.411 66.667 0.00 0.06 43.94 4.85
4254 4493 3.231298 GGCCTGCCGGATAACTCT 58.769 61.111 5.05 0.00 0.00 3.24
4255 4494 1.069935 GGCCTGCCGGATAACTCTC 59.930 63.158 5.05 0.00 0.00 3.20
4256 4495 1.069935 GCCTGCCGGATAACTCTCC 59.930 63.158 5.05 0.00 0.00 3.71
4257 4496 1.686325 GCCTGCCGGATAACTCTCCA 61.686 60.000 5.05 0.00 34.78 3.86
4258 4497 0.390860 CCTGCCGGATAACTCTCCAG 59.609 60.000 5.05 0.00 34.78 3.86
4259 4498 1.403814 CTGCCGGATAACTCTCCAGA 58.596 55.000 5.05 0.00 34.78 3.86
4260 4499 1.067821 CTGCCGGATAACTCTCCAGAC 59.932 57.143 5.05 0.00 34.78 3.51
4261 4500 1.342076 TGCCGGATAACTCTCCAGACT 60.342 52.381 5.05 0.00 34.78 3.24
4262 4501 2.092049 TGCCGGATAACTCTCCAGACTA 60.092 50.000 5.05 0.00 34.78 2.59
4263 4502 3.158676 GCCGGATAACTCTCCAGACTAT 58.841 50.000 5.05 0.00 34.78 2.12
4264 4503 3.057174 GCCGGATAACTCTCCAGACTATG 60.057 52.174 5.05 0.00 34.78 2.23
4265 4504 3.057174 CCGGATAACTCTCCAGACTATGC 60.057 52.174 0.00 0.00 34.78 3.14
4266 4505 3.365465 CGGATAACTCTCCAGACTATGCG 60.365 52.174 0.00 0.00 34.78 4.73
4267 4506 3.570559 GATAACTCTCCAGACTATGCGC 58.429 50.000 0.00 0.00 0.00 6.09
4268 4507 1.479709 AACTCTCCAGACTATGCGCT 58.520 50.000 9.73 0.00 0.00 5.92
4269 4508 1.028905 ACTCTCCAGACTATGCGCTC 58.971 55.000 9.73 0.00 0.00 5.03
4270 4509 0.040514 CTCTCCAGACTATGCGCTCG 60.041 60.000 9.73 0.00 0.00 5.03
4271 4510 1.659954 CTCCAGACTATGCGCTCGC 60.660 63.158 9.73 7.38 42.35 5.03
4272 4511 2.069465 CTCCAGACTATGCGCTCGCT 62.069 60.000 9.73 3.95 42.51 4.93
4273 4512 1.227089 CCAGACTATGCGCTCGCTT 60.227 57.895 9.73 11.44 42.51 4.68
4274 4513 0.807667 CCAGACTATGCGCTCGCTTT 60.808 55.000 9.73 5.77 42.51 3.51
4275 4514 0.299895 CAGACTATGCGCTCGCTTTG 59.700 55.000 9.73 11.98 42.51 2.77
4276 4515 0.807667 AGACTATGCGCTCGCTTTGG 60.808 55.000 9.73 7.54 42.51 3.28
4277 4516 2.325857 CTATGCGCTCGCTTTGGC 59.674 61.111 9.73 0.00 42.51 4.52
4278 4517 3.173390 CTATGCGCTCGCTTTGGCC 62.173 63.158 9.73 0.00 42.51 5.36
4298 4537 3.616721 AGCCTCCGTGCTCGTGTT 61.617 61.111 7.47 0.00 36.75 3.32
4299 4538 2.665185 GCCTCCGTGCTCGTGTTT 60.665 61.111 7.47 0.00 35.01 2.83
4300 4539 2.954753 GCCTCCGTGCTCGTGTTTG 61.955 63.158 7.47 0.00 35.01 2.93
4301 4540 1.594293 CCTCCGTGCTCGTGTTTGT 60.594 57.895 7.47 0.00 35.01 2.83
4302 4541 1.564622 CTCCGTGCTCGTGTTTGTG 59.435 57.895 7.47 0.00 35.01 3.33
4303 4542 0.874175 CTCCGTGCTCGTGTTTGTGA 60.874 55.000 7.47 0.00 35.01 3.58
4304 4543 0.249699 TCCGTGCTCGTGTTTGTGAT 60.250 50.000 7.47 0.00 35.01 3.06
4305 4544 0.163788 CCGTGCTCGTGTTTGTGATC 59.836 55.000 7.47 0.00 35.01 2.92
4306 4545 1.139989 CGTGCTCGTGTTTGTGATCT 58.860 50.000 0.00 0.00 0.00 2.75
4307 4546 2.324860 CGTGCTCGTGTTTGTGATCTA 58.675 47.619 0.00 0.00 0.00 1.98
4308 4547 2.729360 CGTGCTCGTGTTTGTGATCTAA 59.271 45.455 0.00 0.00 0.00 2.10
4309 4548 3.181540 CGTGCTCGTGTTTGTGATCTAAG 60.182 47.826 0.00 0.00 0.00 2.18
4310 4549 3.987868 GTGCTCGTGTTTGTGATCTAAGA 59.012 43.478 0.00 0.00 0.00 2.10
4311 4550 3.987868 TGCTCGTGTTTGTGATCTAAGAC 59.012 43.478 0.00 0.00 0.00 3.01
4312 4551 4.238514 GCTCGTGTTTGTGATCTAAGACT 58.761 43.478 0.00 0.00 0.00 3.24
4313 4552 4.324936 GCTCGTGTTTGTGATCTAAGACTC 59.675 45.833 0.00 0.00 0.00 3.36
4314 4553 5.704888 CTCGTGTTTGTGATCTAAGACTCT 58.295 41.667 0.00 0.00 0.00 3.24
4315 4554 5.461526 TCGTGTTTGTGATCTAAGACTCTG 58.538 41.667 0.00 0.00 0.00 3.35
4316 4555 5.009710 TCGTGTTTGTGATCTAAGACTCTGT 59.990 40.000 0.00 0.00 0.00 3.41
4317 4556 5.343593 CGTGTTTGTGATCTAAGACTCTGTC 59.656 44.000 0.00 0.00 0.00 3.51
4318 4557 6.216569 GTGTTTGTGATCTAAGACTCTGTCA 58.783 40.000 0.00 0.00 34.60 3.58
4319 4558 6.364706 GTGTTTGTGATCTAAGACTCTGTCAG 59.635 42.308 0.00 0.00 34.60 3.51
4320 4559 6.040955 TGTTTGTGATCTAAGACTCTGTCAGT 59.959 38.462 0.00 0.00 38.45 3.41
4328 4567 1.006805 ACTCTGTCAGTCACGCTGC 60.007 57.895 0.00 0.00 44.66 5.25
4329 4568 1.735920 CTCTGTCAGTCACGCTGCC 60.736 63.158 0.00 0.00 44.66 4.85
4330 4569 2.152297 CTCTGTCAGTCACGCTGCCT 62.152 60.000 0.00 0.00 44.66 4.75
4331 4570 0.893727 TCTGTCAGTCACGCTGCCTA 60.894 55.000 0.00 0.00 44.66 3.93
4332 4571 0.457509 CTGTCAGTCACGCTGCCTAG 60.458 60.000 0.00 0.00 44.66 3.02
4333 4572 1.179174 TGTCAGTCACGCTGCCTAGT 61.179 55.000 0.00 0.00 44.66 2.57
4334 4573 0.038159 GTCAGTCACGCTGCCTAGTT 60.038 55.000 0.00 0.00 44.66 2.24
4335 4574 0.038251 TCAGTCACGCTGCCTAGTTG 60.038 55.000 0.00 0.00 44.66 3.16
4336 4575 0.319900 CAGTCACGCTGCCTAGTTGT 60.320 55.000 0.00 0.00 38.52 3.32
4337 4576 0.319900 AGTCACGCTGCCTAGTTGTG 60.320 55.000 0.00 0.00 35.26 3.33
4338 4577 1.005037 TCACGCTGCCTAGTTGTGG 60.005 57.895 0.00 0.00 34.93 4.17
4339 4578 2.034879 CACGCTGCCTAGTTGTGGG 61.035 63.158 0.00 0.00 32.38 4.61
4350 4589 6.465439 GCCTAGTTGTGGGCTTTATTAATT 57.535 37.500 0.00 0.00 46.84 1.40
4351 4590 6.873997 GCCTAGTTGTGGGCTTTATTAATTT 58.126 36.000 0.00 0.00 46.84 1.82
4352 4591 8.002984 GCCTAGTTGTGGGCTTTATTAATTTA 57.997 34.615 0.00 0.00 46.84 1.40
4353 4592 8.471609 GCCTAGTTGTGGGCTTTATTAATTTAA 58.528 33.333 0.00 0.00 46.84 1.52
4363 4602 6.727569 CTTTATTAATTTAAAGCCGGACGC 57.272 37.500 5.05 0.00 33.69 5.19
4364 4603 2.810028 TTAATTTAAAGCCGGACGCG 57.190 45.000 5.05 3.53 44.76 6.01
4365 4604 1.724429 TAATTTAAAGCCGGACGCGT 58.276 45.000 13.85 13.85 44.76 6.01
4366 4605 0.445043 AATTTAAAGCCGGACGCGTC 59.555 50.000 30.67 30.67 44.76 5.19
4367 4606 1.363885 ATTTAAAGCCGGACGCGTCC 61.364 55.000 41.75 41.75 46.18 4.79
4379 4618 2.733593 GCGTCCAGCGTCTTCGTT 60.734 61.111 0.00 0.00 43.66 3.85
4380 4619 2.717809 GCGTCCAGCGTCTTCGTTC 61.718 63.158 0.00 0.00 43.66 3.95
4381 4620 1.081376 CGTCCAGCGTCTTCGTTCT 60.081 57.895 0.00 0.00 39.49 3.01
4382 4621 0.167470 CGTCCAGCGTCTTCGTTCTA 59.833 55.000 0.00 0.00 39.49 2.10
4383 4622 1.400629 CGTCCAGCGTCTTCGTTCTAA 60.401 52.381 0.00 0.00 39.49 2.10
4384 4623 2.669364 GTCCAGCGTCTTCGTTCTAAA 58.331 47.619 0.00 0.00 39.49 1.85
4385 4624 3.054878 GTCCAGCGTCTTCGTTCTAAAA 58.945 45.455 0.00 0.00 39.49 1.52
4386 4625 3.492011 GTCCAGCGTCTTCGTTCTAAAAA 59.508 43.478 0.00 0.00 39.49 1.94
4453 4692 7.164122 CACTGCCTATATAAACATGTGGAGAT 58.836 38.462 0.00 0.00 0.00 2.75
4522 4761 3.079578 CCAGAGACCTACGTAGACAACA 58.920 50.000 24.15 0.00 0.00 3.33
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 4.020543 TGGGCAGAATATTACCGCTTTTT 58.979 39.130 0.00 0.00 0.00 1.94
49 50 3.626930 TGGGCAGAATATTACCGCTTTT 58.373 40.909 0.00 0.00 0.00 2.27
50 51 3.290948 TGGGCAGAATATTACCGCTTT 57.709 42.857 0.00 0.00 0.00 3.51
51 52 3.290948 TTGGGCAGAATATTACCGCTT 57.709 42.857 0.00 0.00 0.00 4.68
52 53 3.508845 ATTGGGCAGAATATTACCGCT 57.491 42.857 0.00 0.00 0.00 5.52
53 54 4.584327 AAATTGGGCAGAATATTACCGC 57.416 40.909 0.00 0.00 0.00 5.68
54 55 5.234116 GCAAAAATTGGGCAGAATATTACCG 59.766 40.000 0.00 0.00 0.00 4.02
55 56 5.234116 CGCAAAAATTGGGCAGAATATTACC 59.766 40.000 0.00 0.00 36.79 2.85
56 57 6.039616 TCGCAAAAATTGGGCAGAATATTAC 58.960 36.000 2.60 0.00 42.68 1.89
57 58 6.214191 TCGCAAAAATTGGGCAGAATATTA 57.786 33.333 2.60 0.00 42.68 0.98
58 59 5.083533 TCGCAAAAATTGGGCAGAATATT 57.916 34.783 2.60 0.00 42.68 1.28
59 60 4.734398 TCGCAAAAATTGGGCAGAATAT 57.266 36.364 2.60 0.00 42.68 1.28
60 61 4.527509 TTCGCAAAAATTGGGCAGAATA 57.472 36.364 2.60 0.00 42.68 1.75
61 62 3.399440 TTCGCAAAAATTGGGCAGAAT 57.601 38.095 2.60 0.00 42.68 2.40
62 63 2.898729 TTCGCAAAAATTGGGCAGAA 57.101 40.000 2.60 0.00 42.68 3.02
63 64 2.898729 TTTCGCAAAAATTGGGCAGA 57.101 40.000 2.60 0.00 42.68 4.26
64 65 2.807392 ACATTTCGCAAAAATTGGGCAG 59.193 40.909 2.60 0.00 42.68 4.85
65 66 2.843701 ACATTTCGCAAAAATTGGGCA 58.156 38.095 2.60 0.00 42.68 5.36
66 67 3.003171 ACAACATTTCGCAAAAATTGGGC 59.997 39.130 2.60 0.00 42.68 5.36
67 68 4.272018 TGACAACATTTCGCAAAAATTGGG 59.728 37.500 1.14 1.14 44.15 4.12
68 69 5.233902 TCTGACAACATTTCGCAAAAATTGG 59.766 36.000 3.41 0.00 32.67 3.16
69 70 6.271396 TCTGACAACATTTCGCAAAAATTG 57.729 33.333 0.00 0.00 33.73 2.32
70 71 6.900568 TTCTGACAACATTTCGCAAAAATT 57.099 29.167 0.00 0.00 0.00 1.82
71 72 6.900568 TTTCTGACAACATTTCGCAAAAAT 57.099 29.167 0.00 0.00 0.00 1.82
72 73 6.712241 TTTTCTGACAACATTTCGCAAAAA 57.288 29.167 0.00 0.00 0.00 1.94
73 74 6.900568 ATTTTCTGACAACATTTCGCAAAA 57.099 29.167 0.00 0.00 0.00 2.44
74 75 7.993821 TTATTTTCTGACAACATTTCGCAAA 57.006 28.000 0.00 0.00 0.00 3.68
75 76 7.993821 TTTATTTTCTGACAACATTTCGCAA 57.006 28.000 0.00 0.00 0.00 4.85
76 77 8.586570 AATTTATTTTCTGACAACATTTCGCA 57.413 26.923 0.00 0.00 0.00 5.10
77 78 9.862585 AAAATTTATTTTCTGACAACATTTCGC 57.137 25.926 0.00 0.00 35.18 4.70
132 133 8.514594 CCAGAATGCTTAGTATTGTTTTCTTGA 58.485 33.333 0.00 0.00 31.97 3.02
133 134 8.514594 TCCAGAATGCTTAGTATTGTTTTCTTG 58.485 33.333 0.00 0.00 31.97 3.02
134 135 8.635765 TCCAGAATGCTTAGTATTGTTTTCTT 57.364 30.769 0.00 0.00 31.97 2.52
135 136 8.635765 TTCCAGAATGCTTAGTATTGTTTTCT 57.364 30.769 0.00 0.00 31.97 2.52
136 137 9.346725 CTTTCCAGAATGCTTAGTATTGTTTTC 57.653 33.333 0.00 0.00 31.97 2.29
137 138 7.814587 GCTTTCCAGAATGCTTAGTATTGTTTT 59.185 33.333 0.00 0.00 38.14 2.43
138 139 7.177392 AGCTTTCCAGAATGCTTAGTATTGTTT 59.823 33.333 13.36 0.00 45.71 2.83
139 140 6.660949 AGCTTTCCAGAATGCTTAGTATTGTT 59.339 34.615 13.36 0.00 45.71 2.83
140 141 6.183347 AGCTTTCCAGAATGCTTAGTATTGT 58.817 36.000 13.36 0.00 45.71 2.71
141 142 6.690194 AGCTTTCCAGAATGCTTAGTATTG 57.310 37.500 13.36 0.00 45.71 1.90
150 151 3.930634 AGTTGAAGCTTTCCAGAATGC 57.069 42.857 0.00 9.58 40.49 3.56
220 221 8.939201 AAAAATGCGGGAATTTTGAAATTTTT 57.061 23.077 3.45 0.00 39.20 1.94
333 334 9.859152 ACAAATTCTAAATTTGGGGAAAATGAA 57.141 25.926 22.30 0.00 41.80 2.57
334 335 9.859152 AACAAATTCTAAATTTGGGGAAAATGA 57.141 25.926 22.30 0.00 41.80 2.57
412 413 9.240159 GCAAAAATTGAAAAATTGCAGAGAAAT 57.760 25.926 4.10 0.00 40.98 2.17
413 414 8.460428 AGCAAAAATTGAAAAATTGCAGAGAAA 58.540 25.926 10.89 0.00 42.58 2.52
414 415 7.911205 CAGCAAAAATTGAAAAATTGCAGAGAA 59.089 29.630 10.89 0.00 42.58 2.87
415 416 7.280428 TCAGCAAAAATTGAAAAATTGCAGAGA 59.720 29.630 10.89 3.78 42.58 3.10
416 417 7.411274 TCAGCAAAAATTGAAAAATTGCAGAG 58.589 30.769 10.89 1.75 42.58 3.35
417 418 7.066043 ACTCAGCAAAAATTGAAAAATTGCAGA 59.934 29.630 10.89 7.46 42.58 4.26
418 419 7.165154 CACTCAGCAAAAATTGAAAAATTGCAG 59.835 33.333 10.89 3.60 42.58 4.41
419 420 6.967767 CACTCAGCAAAAATTGAAAAATTGCA 59.032 30.769 10.89 0.00 42.58 4.08
420 421 6.415573 CCACTCAGCAAAAATTGAAAAATTGC 59.584 34.615 0.00 0.00 41.35 3.56
421 422 6.415573 GCCACTCAGCAAAAATTGAAAAATTG 59.584 34.615 0.00 0.00 0.00 2.32
422 423 6.319405 AGCCACTCAGCAAAAATTGAAAAATT 59.681 30.769 0.00 0.00 34.23 1.82
423 424 5.824097 AGCCACTCAGCAAAAATTGAAAAAT 59.176 32.000 0.00 0.00 34.23 1.82
424 425 5.184711 AGCCACTCAGCAAAAATTGAAAAA 58.815 33.333 0.00 0.00 34.23 1.94
425 426 4.768583 AGCCACTCAGCAAAAATTGAAAA 58.231 34.783 0.00 0.00 34.23 2.29
426 427 4.405116 AGCCACTCAGCAAAAATTGAAA 57.595 36.364 0.00 0.00 34.23 2.69
427 428 4.121317 CAAGCCACTCAGCAAAAATTGAA 58.879 39.130 0.00 0.00 34.23 2.69
428 429 3.719924 CAAGCCACTCAGCAAAAATTGA 58.280 40.909 0.00 0.00 34.23 2.57
429 430 2.222445 GCAAGCCACTCAGCAAAAATTG 59.778 45.455 0.00 0.00 34.23 2.32
430 431 2.103601 AGCAAGCCACTCAGCAAAAATT 59.896 40.909 0.00 0.00 34.23 1.82
431 432 1.690352 AGCAAGCCACTCAGCAAAAAT 59.310 42.857 0.00 0.00 34.23 1.82
432 433 1.113788 AGCAAGCCACTCAGCAAAAA 58.886 45.000 0.00 0.00 34.23 1.94
433 434 0.386476 CAGCAAGCCACTCAGCAAAA 59.614 50.000 0.00 0.00 34.23 2.44
434 435 0.466007 TCAGCAAGCCACTCAGCAAA 60.466 50.000 0.00 0.00 34.23 3.68
435 436 1.148949 TCAGCAAGCCACTCAGCAA 59.851 52.632 0.00 0.00 34.23 3.91
436 437 1.598962 GTCAGCAAGCCACTCAGCA 60.599 57.895 0.00 0.00 34.23 4.41
437 438 2.331132 GGTCAGCAAGCCACTCAGC 61.331 63.158 0.00 0.00 0.00 4.26
438 439 2.031516 CGGTCAGCAAGCCACTCAG 61.032 63.158 0.00 0.00 0.00 3.35
439 440 2.031012 CGGTCAGCAAGCCACTCA 59.969 61.111 0.00 0.00 0.00 3.41
440 441 2.527951 ATCCGGTCAGCAAGCCACTC 62.528 60.000 0.00 0.00 0.00 3.51
441 442 2.596851 ATCCGGTCAGCAAGCCACT 61.597 57.895 0.00 0.00 0.00 4.00
442 443 2.045926 ATCCGGTCAGCAAGCCAC 60.046 61.111 0.00 0.00 0.00 5.01
443 444 1.913951 ATCATCCGGTCAGCAAGCCA 61.914 55.000 0.00 0.00 0.00 4.75
444 445 1.153086 ATCATCCGGTCAGCAAGCC 60.153 57.895 0.00 0.00 0.00 4.35
445 446 0.462581 TGATCATCCGGTCAGCAAGC 60.463 55.000 0.00 0.00 0.00 4.01
446 447 1.667724 GTTGATCATCCGGTCAGCAAG 59.332 52.381 0.00 0.00 0.00 4.01
447 448 1.737838 GTTGATCATCCGGTCAGCAA 58.262 50.000 0.00 0.00 0.00 3.91
448 449 0.460109 CGTTGATCATCCGGTCAGCA 60.460 55.000 0.00 0.00 0.00 4.41
449 450 1.154205 CCGTTGATCATCCGGTCAGC 61.154 60.000 20.56 0.00 37.00 4.26
450 451 0.530650 CCCGTTGATCATCCGGTCAG 60.531 60.000 24.49 11.81 40.10 3.51
451 452 1.261938 ACCCGTTGATCATCCGGTCA 61.262 55.000 24.49 0.00 40.10 4.02
452 453 0.529992 GACCCGTTGATCATCCGGTC 60.530 60.000 24.49 22.77 40.10 4.79
453 454 1.261938 TGACCCGTTGATCATCCGGT 61.262 55.000 24.49 19.83 40.10 5.28
454 455 0.107897 TTGACCCGTTGATCATCCGG 60.108 55.000 21.45 21.45 41.37 5.14
455 456 1.396996 GTTTGACCCGTTGATCATCCG 59.603 52.381 0.00 2.00 0.00 4.18
456 457 1.743394 GGTTTGACCCGTTGATCATCC 59.257 52.381 0.00 0.00 30.04 3.51
468 469 1.530655 CCACACCCTGGGTTTGACC 60.531 63.158 29.21 0.00 35.60 4.02
469 470 0.537371 CTCCACACCCTGGGTTTGAC 60.537 60.000 29.21 0.00 41.06 3.18
470 471 0.696143 TCTCCACACCCTGGGTTTGA 60.696 55.000 29.21 18.19 41.06 2.69
471 472 0.250901 CTCTCCACACCCTGGGTTTG 60.251 60.000 22.49 22.49 41.06 2.93
472 473 1.427072 CCTCTCCACACCCTGGGTTT 61.427 60.000 17.76 7.31 41.06 3.27
473 474 1.847968 CCTCTCCACACCCTGGGTT 60.848 63.158 17.76 5.12 41.06 4.11
474 475 2.203998 CCTCTCCACACCCTGGGT 60.204 66.667 14.05 14.05 41.06 4.51
475 476 3.011517 CCCTCTCCACACCCTGGG 61.012 72.222 12.28 12.28 41.06 4.45
476 477 3.011517 CCCCTCTCCACACCCTGG 61.012 72.222 0.00 0.00 42.29 4.45
477 478 1.992277 CTCCCCTCTCCACACCCTG 60.992 68.421 0.00 0.00 0.00 4.45
478 479 2.452114 CTCCCCTCTCCACACCCT 59.548 66.667 0.00 0.00 0.00 4.34
479 480 2.689034 CCTCCCCTCTCCACACCC 60.689 72.222 0.00 0.00 0.00 4.61
480 481 2.689034 CCCTCCCCTCTCCACACC 60.689 72.222 0.00 0.00 0.00 4.16
481 482 1.539124 AACCCTCCCCTCTCCACAC 60.539 63.158 0.00 0.00 0.00 3.82
482 483 1.538876 CAACCCTCCCCTCTCCACA 60.539 63.158 0.00 0.00 0.00 4.17
483 484 0.840722 TTCAACCCTCCCCTCTCCAC 60.841 60.000 0.00 0.00 0.00 4.02
484 485 0.121197 ATTCAACCCTCCCCTCTCCA 59.879 55.000 0.00 0.00 0.00 3.86
485 486 0.840617 GATTCAACCCTCCCCTCTCC 59.159 60.000 0.00 0.00 0.00 3.71
486 487 0.840617 GGATTCAACCCTCCCCTCTC 59.159 60.000 0.00 0.00 0.00 3.20
487 488 0.423544 AGGATTCAACCCTCCCCTCT 59.576 55.000 0.00 0.00 31.49 3.69
488 489 0.840617 GAGGATTCAACCCTCCCCTC 59.159 60.000 0.00 0.00 43.37 4.30
489 490 3.029083 GAGGATTCAACCCTCCCCT 57.971 57.895 0.00 0.00 43.37 4.79
494 495 0.840722 ACCGGTGAGGATTCAACCCT 60.841 55.000 6.12 0.00 45.00 4.34
495 496 0.037734 AACCGGTGAGGATTCAACCC 59.962 55.000 8.52 0.00 45.00 4.11
496 497 1.905637 AAACCGGTGAGGATTCAACC 58.094 50.000 8.52 0.00 45.00 3.77
497 498 4.758165 TCTTAAAACCGGTGAGGATTCAAC 59.242 41.667 8.52 0.00 45.00 3.18
498 499 4.975631 TCTTAAAACCGGTGAGGATTCAA 58.024 39.130 8.52 0.00 45.00 2.69
499 500 4.041198 ACTCTTAAAACCGGTGAGGATTCA 59.959 41.667 19.66 0.00 45.00 2.57
500 501 4.576879 ACTCTTAAAACCGGTGAGGATTC 58.423 43.478 19.66 0.00 45.00 2.52
501 502 4.635699 ACTCTTAAAACCGGTGAGGATT 57.364 40.909 19.66 3.40 45.00 3.01
502 503 4.576879 GAACTCTTAAAACCGGTGAGGAT 58.423 43.478 19.66 10.34 45.00 3.24
503 504 3.553508 CGAACTCTTAAAACCGGTGAGGA 60.554 47.826 19.66 9.27 45.00 3.71
505 506 2.735134 CCGAACTCTTAAAACCGGTGAG 59.265 50.000 8.52 12.98 33.02 3.51
506 507 2.758009 CCGAACTCTTAAAACCGGTGA 58.242 47.619 8.52 0.00 33.02 4.02
507 508 1.196127 GCCGAACTCTTAAAACCGGTG 59.804 52.381 8.52 0.00 39.18 4.94
508 509 1.202675 TGCCGAACTCTTAAAACCGGT 60.203 47.619 0.00 0.00 39.18 5.28
509 510 1.515081 TGCCGAACTCTTAAAACCGG 58.485 50.000 0.00 0.00 39.88 5.28
510 511 3.187637 TCAATGCCGAACTCTTAAAACCG 59.812 43.478 0.00 0.00 0.00 4.44
511 512 4.759516 TCAATGCCGAACTCTTAAAACC 57.240 40.909 0.00 0.00 0.00 3.27
512 513 6.612306 AGAATCAATGCCGAACTCTTAAAAC 58.388 36.000 0.00 0.00 0.00 2.43
513 514 6.817765 AGAATCAATGCCGAACTCTTAAAA 57.182 33.333 0.00 0.00 0.00 1.52
514 515 6.817765 AAGAATCAATGCCGAACTCTTAAA 57.182 33.333 0.00 0.00 0.00 1.52
515 516 7.277981 GTCTAAGAATCAATGCCGAACTCTTAA 59.722 37.037 0.00 0.00 29.76 1.85
516 517 6.757010 GTCTAAGAATCAATGCCGAACTCTTA 59.243 38.462 0.00 0.00 0.00 2.10
517 518 5.582665 GTCTAAGAATCAATGCCGAACTCTT 59.417 40.000 0.00 0.00 0.00 2.85
518 519 5.112686 GTCTAAGAATCAATGCCGAACTCT 58.887 41.667 0.00 0.00 0.00 3.24
519 520 4.026475 CGTCTAAGAATCAATGCCGAACTC 60.026 45.833 0.00 0.00 0.00 3.01
520 521 3.865745 CGTCTAAGAATCAATGCCGAACT 59.134 43.478 0.00 0.00 0.00 3.01
521 522 3.001330 CCGTCTAAGAATCAATGCCGAAC 59.999 47.826 0.00 0.00 0.00 3.95
522 523 3.194861 CCGTCTAAGAATCAATGCCGAA 58.805 45.455 0.00 0.00 0.00 4.30
523 524 2.167693 ACCGTCTAAGAATCAATGCCGA 59.832 45.455 0.00 0.00 0.00 5.54
524 525 2.550978 ACCGTCTAAGAATCAATGCCG 58.449 47.619 0.00 0.00 0.00 5.69
525 526 7.907214 ATAATACCGTCTAAGAATCAATGCC 57.093 36.000 0.00 0.00 0.00 4.40
526 527 9.640963 ACTATAATACCGTCTAAGAATCAATGC 57.359 33.333 0.00 0.00 0.00 3.56
530 531 9.961265 CACAACTATAATACCGTCTAAGAATCA 57.039 33.333 0.00 0.00 0.00 2.57
531 532 9.962783 ACACAACTATAATACCGTCTAAGAATC 57.037 33.333 0.00 0.00 0.00 2.52
536 537 9.709495 ACAAAACACAACTATAATACCGTCTAA 57.291 29.630 0.00 0.00 0.00 2.10
538 539 9.362539 CTACAAAACACAACTATAATACCGTCT 57.637 33.333 0.00 0.00 0.00 4.18
539 540 9.357652 TCTACAAAACACAACTATAATACCGTC 57.642 33.333 0.00 0.00 0.00 4.79
540 541 9.880157 ATCTACAAAACACAACTATAATACCGT 57.120 29.630 0.00 0.00 0.00 4.83
546 547 9.953565 AGCCTAATCTACAAAACACAACTATAA 57.046 29.630 0.00 0.00 0.00 0.98
548 549 9.601217 CTAGCCTAATCTACAAAACACAACTAT 57.399 33.333 0.00 0.00 0.00 2.12
549 550 8.038944 CCTAGCCTAATCTACAAAACACAACTA 58.961 37.037 0.00 0.00 0.00 2.24
550 551 6.879458 CCTAGCCTAATCTACAAAACACAACT 59.121 38.462 0.00 0.00 0.00 3.16
551 552 6.093633 CCCTAGCCTAATCTACAAAACACAAC 59.906 42.308 0.00 0.00 0.00 3.32
552 553 6.177610 CCCTAGCCTAATCTACAAAACACAA 58.822 40.000 0.00 0.00 0.00 3.33
553 554 5.249852 ACCCTAGCCTAATCTACAAAACACA 59.750 40.000 0.00 0.00 0.00 3.72
554 555 5.742063 ACCCTAGCCTAATCTACAAAACAC 58.258 41.667 0.00 0.00 0.00 3.32
555 556 6.099269 CCTACCCTAGCCTAATCTACAAAACA 59.901 42.308 0.00 0.00 0.00 2.83
556 557 6.522946 CCTACCCTAGCCTAATCTACAAAAC 58.477 44.000 0.00 0.00 0.00 2.43
557 558 5.071384 GCCTACCCTAGCCTAATCTACAAAA 59.929 44.000 0.00 0.00 0.00 2.44
558 559 4.591924 GCCTACCCTAGCCTAATCTACAAA 59.408 45.833 0.00 0.00 0.00 2.83
559 560 4.158015 GCCTACCCTAGCCTAATCTACAA 58.842 47.826 0.00 0.00 0.00 2.41
560 561 3.775910 GCCTACCCTAGCCTAATCTACA 58.224 50.000 0.00 0.00 0.00 2.74
561 562 2.754002 CGCCTACCCTAGCCTAATCTAC 59.246 54.545 0.00 0.00 0.00 2.59
562 563 2.377869 ACGCCTACCCTAGCCTAATCTA 59.622 50.000 0.00 0.00 0.00 1.98
563 564 1.147399 ACGCCTACCCTAGCCTAATCT 59.853 52.381 0.00 0.00 0.00 2.40
564 565 1.630223 ACGCCTACCCTAGCCTAATC 58.370 55.000 0.00 0.00 0.00 1.75
565 566 1.692519 CAACGCCTACCCTAGCCTAAT 59.307 52.381 0.00 0.00 0.00 1.73
566 567 1.117150 CAACGCCTACCCTAGCCTAA 58.883 55.000 0.00 0.00 0.00 2.69
567 568 0.259647 TCAACGCCTACCCTAGCCTA 59.740 55.000 0.00 0.00 0.00 3.93
568 569 1.001248 TCAACGCCTACCCTAGCCT 59.999 57.895 0.00 0.00 0.00 4.58
569 570 1.041447 TCTCAACGCCTACCCTAGCC 61.041 60.000 0.00 0.00 0.00 3.93
570 571 0.386113 CTCTCAACGCCTACCCTAGC 59.614 60.000 0.00 0.00 0.00 3.42
571 572 1.765230 ACTCTCAACGCCTACCCTAG 58.235 55.000 0.00 0.00 0.00 3.02
572 573 1.822990 CAACTCTCAACGCCTACCCTA 59.177 52.381 0.00 0.00 0.00 3.53
573 574 0.608640 CAACTCTCAACGCCTACCCT 59.391 55.000 0.00 0.00 0.00 4.34
574 575 0.606604 TCAACTCTCAACGCCTACCC 59.393 55.000 0.00 0.00 0.00 3.69
575 576 1.544691 TCTCAACTCTCAACGCCTACC 59.455 52.381 0.00 0.00 0.00 3.18
576 577 3.512033 ATCTCAACTCTCAACGCCTAC 57.488 47.619 0.00 0.00 0.00 3.18
577 578 4.499865 GCATATCTCAACTCTCAACGCCTA 60.500 45.833 0.00 0.00 0.00 3.93
578 579 3.739519 GCATATCTCAACTCTCAACGCCT 60.740 47.826 0.00 0.00 0.00 5.52
579 580 2.541762 GCATATCTCAACTCTCAACGCC 59.458 50.000 0.00 0.00 0.00 5.68
580 581 3.000724 GTGCATATCTCAACTCTCAACGC 59.999 47.826 0.00 0.00 0.00 4.84
581 582 4.428209 AGTGCATATCTCAACTCTCAACG 58.572 43.478 0.00 0.00 0.00 4.10
582 583 6.105333 AGAAGTGCATATCTCAACTCTCAAC 58.895 40.000 0.00 0.00 0.00 3.18
583 584 6.291648 AGAAGTGCATATCTCAACTCTCAA 57.708 37.500 0.00 0.00 0.00 3.02
584 585 5.929058 AGAAGTGCATATCTCAACTCTCA 57.071 39.130 0.00 0.00 0.00 3.27
585 586 7.608308 AAAAGAAGTGCATATCTCAACTCTC 57.392 36.000 4.87 0.00 0.00 3.20
586 587 7.768120 CCTAAAAGAAGTGCATATCTCAACTCT 59.232 37.037 4.87 0.00 0.00 3.24
587 588 7.011857 CCCTAAAAGAAGTGCATATCTCAACTC 59.988 40.741 4.87 0.00 0.00 3.01
588 589 6.825721 CCCTAAAAGAAGTGCATATCTCAACT 59.174 38.462 4.87 0.00 0.00 3.16
589 590 6.038714 CCCCTAAAAGAAGTGCATATCTCAAC 59.961 42.308 4.87 0.00 0.00 3.18
590 591 6.069673 TCCCCTAAAAGAAGTGCATATCTCAA 60.070 38.462 4.87 0.00 0.00 3.02
591 592 5.428457 TCCCCTAAAAGAAGTGCATATCTCA 59.572 40.000 4.87 0.00 0.00 3.27
592 593 5.930135 TCCCCTAAAAGAAGTGCATATCTC 58.070 41.667 4.87 0.00 0.00 2.75
593 594 5.975988 TCCCCTAAAAGAAGTGCATATCT 57.024 39.130 0.00 0.00 0.00 1.98
594 595 7.285401 TCATTTCCCCTAAAAGAAGTGCATATC 59.715 37.037 0.00 0.00 31.76 1.63
595 596 7.125391 TCATTTCCCCTAAAAGAAGTGCATAT 58.875 34.615 0.00 0.00 31.76 1.78
596 597 6.489603 TCATTTCCCCTAAAAGAAGTGCATA 58.510 36.000 0.00 0.00 31.76 3.14
597 598 5.332743 TCATTTCCCCTAAAAGAAGTGCAT 58.667 37.500 0.00 0.00 31.76 3.96
598 599 4.735369 TCATTTCCCCTAAAAGAAGTGCA 58.265 39.130 0.00 0.00 31.76 4.57
599 600 5.470368 GTTCATTTCCCCTAAAAGAAGTGC 58.530 41.667 0.00 0.00 35.93 4.40
600 601 5.472137 TCGTTCATTTCCCCTAAAAGAAGTG 59.528 40.000 0.00 0.00 35.93 3.16
601 602 5.627135 TCGTTCATTTCCCCTAAAAGAAGT 58.373 37.500 0.00 0.00 35.93 3.01
602 603 5.123979 CCTCGTTCATTTCCCCTAAAAGAAG 59.876 44.000 0.00 0.00 35.93 2.85
603 604 5.007682 CCTCGTTCATTTCCCCTAAAAGAA 58.992 41.667 0.00 0.00 33.57 2.52
604 605 4.287585 TCCTCGTTCATTTCCCCTAAAAGA 59.712 41.667 0.00 0.00 0.00 2.52
605 606 4.585879 TCCTCGTTCATTTCCCCTAAAAG 58.414 43.478 0.00 0.00 0.00 2.27
619 620 3.307782 TGTTCACTTTCGTTTCCTCGTTC 59.692 43.478 0.00 0.00 0.00 3.95
642 643 4.316823 TGGTCCTGGGCTCCTCGT 62.317 66.667 0.00 0.00 0.00 4.18
644 645 3.403558 GGTGGTCCTGGGCTCCTC 61.404 72.222 0.00 0.00 0.00 3.71
647 648 1.623542 ATAACGGTGGTCCTGGGCTC 61.624 60.000 0.00 0.00 0.00 4.70
648 649 1.615424 ATAACGGTGGTCCTGGGCT 60.615 57.895 0.00 0.00 0.00 5.19
649 650 1.153229 GATAACGGTGGTCCTGGGC 60.153 63.158 0.00 0.00 0.00 5.36
650 651 0.178068 CTGATAACGGTGGTCCTGGG 59.822 60.000 0.00 0.00 0.00 4.45
651 652 0.462047 GCTGATAACGGTGGTCCTGG 60.462 60.000 0.00 0.00 0.00 4.45
652 653 0.462047 GGCTGATAACGGTGGTCCTG 60.462 60.000 0.00 0.00 0.00 3.86
653 654 1.623542 GGGCTGATAACGGTGGTCCT 61.624 60.000 0.00 0.00 0.00 3.85
654 655 1.153229 GGGCTGATAACGGTGGTCC 60.153 63.158 0.00 0.00 0.00 4.46
655 656 1.520787 CGGGCTGATAACGGTGGTC 60.521 63.158 0.00 0.00 0.00 4.02
673 679 3.177997 TCTTTGCTTTGTTTGGGCTTC 57.822 42.857 0.00 0.00 0.00 3.86
697 703 7.020827 TCTCTCTCTCTCTCTCTCTTCTTTT 57.979 40.000 0.00 0.00 0.00 2.27
700 706 5.523588 TCTCTCTCTCTCTCTCTCTCTTCT 58.476 45.833 0.00 0.00 0.00 2.85
701 707 5.362430 ACTCTCTCTCTCTCTCTCTCTCTTC 59.638 48.000 0.00 0.00 0.00 2.87
702 708 5.276440 ACTCTCTCTCTCTCTCTCTCTCTT 58.724 45.833 0.00 0.00 0.00 2.85
703 709 4.877773 ACTCTCTCTCTCTCTCTCTCTCT 58.122 47.826 0.00 0.00 0.00 3.10
704 710 4.261405 CGACTCTCTCTCTCTCTCTCTCTC 60.261 54.167 0.00 0.00 0.00 3.20
705 711 3.634448 CGACTCTCTCTCTCTCTCTCTCT 59.366 52.174 0.00 0.00 0.00 3.10
706 712 3.381908 ACGACTCTCTCTCTCTCTCTCTC 59.618 52.174 0.00 0.00 0.00 3.20
707 713 3.366396 ACGACTCTCTCTCTCTCTCTCT 58.634 50.000 0.00 0.00 0.00 3.10
787 793 1.141019 GCCGCGATTCTCACCTGTA 59.859 57.895 8.23 0.00 0.00 2.74
908 914 3.384789 AGTTGGATTGAGGAATCGATCGA 59.615 43.478 21.86 21.86 39.22 3.59
991 1027 2.903135 CTCCTCTATCCATCACCCTTCC 59.097 54.545 0.00 0.00 0.00 3.46
1074 1125 3.208594 TGGAAAGCTCATGGAATCGATG 58.791 45.455 0.00 0.00 0.00 3.84
1104 1155 4.006319 CTCCCTTTGATTCAACCTGAGAC 58.994 47.826 0.00 0.00 0.00 3.36
1109 1160 6.394345 AATCTACTCCCTTTGATTCAACCT 57.606 37.500 0.00 0.00 0.00 3.50
1142 1193 0.738762 CGTCCTGCATCACCAGACAG 60.739 60.000 0.00 0.00 34.77 3.51
1168 1219 2.359169 CGAGCCTACCCCTGAGCAA 61.359 63.158 0.00 0.00 0.00 3.91
1169 1220 2.759973 CGAGCCTACCCCTGAGCA 60.760 66.667 0.00 0.00 0.00 4.26
1175 1226 0.175989 CTCAAGAACGAGCCTACCCC 59.824 60.000 0.00 0.00 0.00 4.95
1191 1242 3.099905 AGACCACTCGAAATCATCCTCA 58.900 45.455 0.00 0.00 0.00 3.86
1233 1284 0.610174 TGGCATCACTCTGGTCTGAC 59.390 55.000 0.00 0.00 0.00 3.51
1236 1287 1.270414 CCCTGGCATCACTCTGGTCT 61.270 60.000 0.00 0.00 0.00 3.85
1275 1326 1.065418 AGGAAGCTAATGTCAACCCCG 60.065 52.381 0.00 0.00 0.00 5.73
1398 1449 3.492337 AGCAAGAAAACCCGGAATGTAA 58.508 40.909 0.73 0.00 0.00 2.41
1407 1458 3.254411 CCTCTCTGAAAGCAAGAAAACCC 59.746 47.826 0.00 0.00 0.00 4.11
1434 1485 6.183360 CGAAAGAAAGTGCATATATGGTGTGT 60.183 38.462 14.51 0.00 0.00 3.72
1446 1497 3.988379 AATTCAGCGAAAGAAAGTGCA 57.012 38.095 0.00 0.00 0.00 4.57
1447 1498 4.044426 ACAAATTCAGCGAAAGAAAGTGC 58.956 39.130 0.00 0.00 0.00 4.40
1448 1499 6.405216 CAAACAAATTCAGCGAAAGAAAGTG 58.595 36.000 0.00 0.00 0.00 3.16
1452 1507 5.255710 TCCAAACAAATTCAGCGAAAGAA 57.744 34.783 0.00 0.00 0.00 2.52
1454 1509 4.803088 TGTTCCAAACAAATTCAGCGAAAG 59.197 37.500 0.00 0.00 38.72 2.62
1478 1533 5.521906 ACTGCACGTGTCTATATCTTCAT 57.478 39.130 18.38 0.00 0.00 2.57
1483 1538 9.066939 CATAGATAAACTGCACGTGTCTATATC 57.933 37.037 18.38 16.84 30.72 1.63
1603 1658 5.747565 TGCAAGTAAAGACAAGATTGTTCG 58.252 37.500 0.00 0.00 42.43 3.95
1619 1674 6.892658 AACTTTGTACCATTGATGCAAGTA 57.107 33.333 0.00 0.00 0.00 2.24
1630 1685 9.174166 GTCCAGACATAATAAACTTTGTACCAT 57.826 33.333 0.00 0.00 0.00 3.55
1663 1718 2.232941 AGCCTGATTTGCACATTTGAGG 59.767 45.455 0.00 0.00 0.00 3.86
1670 1725 3.815856 TTTTTCAGCCTGATTTGCACA 57.184 38.095 0.00 0.00 0.00 4.57
1695 1750 8.779303 ACGTAACAAATAACACTGATTGAATCA 58.221 29.630 7.73 7.73 37.76 2.57
1702 1757 5.163992 CGAGCACGTAACAAATAACACTGAT 60.164 40.000 0.00 0.00 34.56 2.90
1816 1871 5.882557 AGGAAGCAAAGTCAATCACGATTAT 59.117 36.000 0.00 0.00 0.00 1.28
2024 2088 8.421784 TCACCAAATACAGGCTAAGATTAGTAG 58.578 37.037 1.82 0.00 33.32 2.57
2235 2313 3.003394 TGCAACCCCATGAGATAGTTG 57.997 47.619 0.00 1.83 40.55 3.16
2249 2327 2.497273 ACAGGAAATAAGGCATGCAACC 59.503 45.455 21.36 10.83 0.00 3.77
2255 2333 3.511146 CACACCAACAGGAAATAAGGCAT 59.489 43.478 0.00 0.00 0.00 4.40
2299 2377 6.392625 TCTCTGACTGCATAGTAATGTACC 57.607 41.667 0.00 0.00 37.25 3.34
2305 2383 9.453572 AAAATGAATTCTCTGACTGCATAGTAA 57.546 29.630 7.05 0.00 37.25 2.24
2542 2748 7.391620 ACTACTGCCAAACTTGCTACTATTAA 58.608 34.615 0.00 0.00 0.00 1.40
2639 2856 8.353684 CACCTCAGTCTTACGAACTATATCAAT 58.646 37.037 0.00 0.00 0.00 2.57
2641 2858 7.052248 TCACCTCAGTCTTACGAACTATATCA 58.948 38.462 0.00 0.00 0.00 2.15
2642 2859 7.493743 TCACCTCAGTCTTACGAACTATATC 57.506 40.000 0.00 0.00 0.00 1.63
2643 2860 8.466617 AATCACCTCAGTCTTACGAACTATAT 57.533 34.615 0.00 0.00 0.00 0.86
2645 2862 6.777213 AATCACCTCAGTCTTACGAACTAT 57.223 37.500 0.00 0.00 0.00 2.12
2660 2887 8.099364 TCTTTCATAAACACAGAAATCACCTC 57.901 34.615 0.00 0.00 31.58 3.85
2694 2921 4.337264 AAGGGCTTCAGGGATTACAAAT 57.663 40.909 0.00 0.00 0.00 2.32
2717 2944 7.801104 TGTATTGTATCACCAGGATTACATGT 58.199 34.615 2.69 2.69 37.44 3.21
2721 2948 8.993121 CAAGATGTATTGTATCACCAGGATTAC 58.007 37.037 0.00 0.00 37.44 1.89
2751 2978 3.486841 GCTTGCCACAAATATGCATAACG 59.513 43.478 11.13 4.76 34.51 3.18
3006 3244 0.405198 ATCCACATGGTGCAACTGGA 59.595 50.000 13.13 13.13 36.74 3.86
3158 3396 8.928733 CCCGTTACACGTTTAGCAATATAATAT 58.071 33.333 0.00 0.00 40.58 1.28
3358 3596 3.833732 AGGCTCTGGAACACGATATCTA 58.166 45.455 0.34 0.00 0.00 1.98
3415 3653 1.557443 CTGCCGACGTGTGGAAACTC 61.557 60.000 7.59 0.00 0.00 3.01
3426 3664 0.317770 ACAAAATGCAACTGCCGACG 60.318 50.000 0.00 0.00 41.18 5.12
3462 3700 4.729552 TCTTATATCAGCCTGGGCAAAT 57.270 40.909 14.39 8.83 44.88 2.32
3505 3743 7.446769 TCTTGTTACTGCTGTAATCTTTGGTA 58.553 34.615 17.76 0.00 40.31 3.25
3547 3785 2.504175 GTGAAGGCTATCCAAGGGTACA 59.496 50.000 0.00 0.00 33.74 2.90
3558 3796 5.609423 CAGCTAGAAAGATGTGAAGGCTAT 58.391 41.667 0.00 0.00 34.34 2.97
3582 3820 7.484641 CGTCAGTTTCTTTCTCAAATTTCACAA 59.515 33.333 0.00 0.00 0.00 3.33
3627 3865 6.614694 TTAGAGAAGGCTGTACATTGGTTA 57.385 37.500 0.00 0.00 0.00 2.85
3632 3870 8.770010 ACTAGTATTAGAGAAGGCTGTACATT 57.230 34.615 0.00 0.00 0.00 2.71
3742 3981 0.457853 GCATGTGCACAGCAAGATGG 60.458 55.000 25.84 7.75 41.47 3.51
3845 4084 5.786264 AGTTGTACTCCAAGATATACCGG 57.214 43.478 0.00 0.00 32.51 5.28
3886 4125 5.009631 TGTGGCTTTATTGTACTGCAAGAT 58.990 37.500 0.00 0.00 40.86 2.40
3992 4231 9.664332 CAGAGATAGATACTTTGATAATTGGGG 57.336 37.037 0.00 0.00 0.00 4.96
4049 4288 4.843728 TGGCTTTATTGTACTGGAAGGAG 58.156 43.478 0.00 0.00 39.30 3.69
4050 4289 4.919774 TGGCTTTATTGTACTGGAAGGA 57.080 40.909 0.00 0.00 39.30 3.36
4193 4432 6.261118 CAAAGTAGATTACATGGCTTGAAGC 58.739 40.000 9.04 9.04 41.46 3.86
4195 4434 5.945784 AGCAAAGTAGATTACATGGCTTGAA 59.054 36.000 7.45 0.00 30.01 2.69
4196 4435 5.500234 AGCAAAGTAGATTACATGGCTTGA 58.500 37.500 7.45 0.00 30.01 3.02
4197 4436 5.824904 AGCAAAGTAGATTACATGGCTTG 57.175 39.130 0.00 0.00 30.01 4.01
4198 4437 5.393461 GCAAGCAAAGTAGATTACATGGCTT 60.393 40.000 0.00 1.39 39.30 4.35
4199 4438 4.096984 GCAAGCAAAGTAGATTACATGGCT 59.903 41.667 0.00 0.00 33.73 4.75
4200 4439 4.096984 AGCAAGCAAAGTAGATTACATGGC 59.903 41.667 0.00 0.00 0.00 4.40
4201 4440 5.220931 GGAGCAAGCAAAGTAGATTACATGG 60.221 44.000 0.00 0.00 0.00 3.66
4202 4441 5.503031 CGGAGCAAGCAAAGTAGATTACATG 60.503 44.000 0.00 0.00 0.00 3.21
4203 4442 4.572389 CGGAGCAAGCAAAGTAGATTACAT 59.428 41.667 0.00 0.00 0.00 2.29
4204 4443 3.932710 CGGAGCAAGCAAAGTAGATTACA 59.067 43.478 0.00 0.00 0.00 2.41
4205 4444 3.933332 ACGGAGCAAGCAAAGTAGATTAC 59.067 43.478 0.00 0.00 0.00 1.89
4206 4445 3.932710 CACGGAGCAAGCAAAGTAGATTA 59.067 43.478 0.00 0.00 0.00 1.75
4207 4446 2.744202 CACGGAGCAAGCAAAGTAGATT 59.256 45.455 0.00 0.00 0.00 2.40
4208 4447 2.350522 CACGGAGCAAGCAAAGTAGAT 58.649 47.619 0.00 0.00 0.00 1.98
4209 4448 1.795768 CACGGAGCAAGCAAAGTAGA 58.204 50.000 0.00 0.00 0.00 2.59
4210 4449 0.166814 GCACGGAGCAAGCAAAGTAG 59.833 55.000 0.00 0.00 44.79 2.57
4211 4450 2.244000 GCACGGAGCAAGCAAAGTA 58.756 52.632 0.00 0.00 44.79 2.24
4212 4451 3.034030 GCACGGAGCAAGCAAAGT 58.966 55.556 0.00 0.00 44.79 2.66
4225 4464 4.093952 CAGGCCGAAAGCAGCACG 62.094 66.667 0.00 0.00 46.50 5.34
4226 4465 4.410743 GCAGGCCGAAAGCAGCAC 62.411 66.667 0.00 0.00 46.50 4.40
4237 4476 1.069935 GAGAGTTATCCGGCAGGCC 59.930 63.158 0.00 0.00 37.47 5.19
4238 4477 1.069935 GGAGAGTTATCCGGCAGGC 59.930 63.158 0.00 0.00 37.47 4.85
4239 4478 0.390860 CTGGAGAGTTATCCGGCAGG 59.609 60.000 0.00 0.00 42.77 4.85
4240 4479 1.067821 GTCTGGAGAGTTATCCGGCAG 59.932 57.143 0.00 0.00 44.27 4.85
4241 4480 1.112113 GTCTGGAGAGTTATCCGGCA 58.888 55.000 0.00 0.00 44.27 5.69
4242 4481 1.404843 AGTCTGGAGAGTTATCCGGC 58.595 55.000 0.00 0.00 44.27 6.13
4243 4482 3.057174 GCATAGTCTGGAGAGTTATCCGG 60.057 52.174 0.00 0.00 45.74 5.14
4244 4483 3.365465 CGCATAGTCTGGAGAGTTATCCG 60.365 52.174 0.00 0.00 42.77 4.18
4245 4484 3.612955 GCGCATAGTCTGGAGAGTTATCC 60.613 52.174 0.30 0.00 40.03 2.59
4246 4485 3.254657 AGCGCATAGTCTGGAGAGTTATC 59.745 47.826 11.47 0.00 0.00 1.75
4247 4486 3.226777 AGCGCATAGTCTGGAGAGTTAT 58.773 45.455 11.47 0.00 0.00 1.89
4248 4487 2.619177 GAGCGCATAGTCTGGAGAGTTA 59.381 50.000 11.47 0.00 0.00 2.24
4249 4488 1.407258 GAGCGCATAGTCTGGAGAGTT 59.593 52.381 11.47 0.00 0.00 3.01
4250 4489 1.028905 GAGCGCATAGTCTGGAGAGT 58.971 55.000 11.47 0.00 0.00 3.24
4251 4490 0.040514 CGAGCGCATAGTCTGGAGAG 60.041 60.000 11.47 0.00 0.00 3.20
4252 4491 2.025719 CGAGCGCATAGTCTGGAGA 58.974 57.895 11.47 0.00 0.00 3.71
4253 4492 1.659954 GCGAGCGCATAGTCTGGAG 60.660 63.158 11.47 0.00 41.49 3.86
4254 4493 1.667154 AAGCGAGCGCATAGTCTGGA 61.667 55.000 17.68 0.00 44.88 3.86
4255 4494 0.807667 AAAGCGAGCGCATAGTCTGG 60.808 55.000 17.68 0.00 44.88 3.86
4256 4495 0.299895 CAAAGCGAGCGCATAGTCTG 59.700 55.000 17.68 0.00 44.88 3.51
4257 4496 0.807667 CCAAAGCGAGCGCATAGTCT 60.808 55.000 17.68 0.00 44.88 3.24
4258 4497 1.638467 CCAAAGCGAGCGCATAGTC 59.362 57.895 17.68 0.00 44.88 2.59
4259 4498 2.464459 GCCAAAGCGAGCGCATAGT 61.464 57.895 17.68 0.00 44.88 2.12
4260 4499 2.325857 GCCAAAGCGAGCGCATAG 59.674 61.111 17.68 0.37 44.88 2.23
4261 4500 3.202001 GGCCAAAGCGAGCGCATA 61.202 61.111 17.68 0.00 44.88 3.14
4282 4521 2.665185 AAACACGAGCACGGAGGC 60.665 61.111 8.74 0.00 44.46 4.70
4283 4522 1.594293 ACAAACACGAGCACGGAGG 60.594 57.895 8.74 0.00 44.46 4.30
4284 4523 0.874175 TCACAAACACGAGCACGGAG 60.874 55.000 8.74 2.52 44.46 4.63
4285 4524 0.249699 ATCACAAACACGAGCACGGA 60.250 50.000 8.74 0.00 44.46 4.69
4286 4525 0.163788 GATCACAAACACGAGCACGG 59.836 55.000 8.74 0.00 44.46 4.94
4287 4526 1.139989 AGATCACAAACACGAGCACG 58.860 50.000 0.76 0.76 45.75 5.34
4288 4527 3.987868 TCTTAGATCACAAACACGAGCAC 59.012 43.478 0.00 0.00 0.00 4.40
4289 4528 3.987868 GTCTTAGATCACAAACACGAGCA 59.012 43.478 0.00 0.00 0.00 4.26
4290 4529 4.238514 AGTCTTAGATCACAAACACGAGC 58.761 43.478 0.00 0.00 0.00 5.03
4291 4530 5.570973 CAGAGTCTTAGATCACAAACACGAG 59.429 44.000 0.00 0.00 0.00 4.18
4292 4531 5.009710 ACAGAGTCTTAGATCACAAACACGA 59.990 40.000 0.00 0.00 0.00 4.35
4293 4532 5.223382 ACAGAGTCTTAGATCACAAACACG 58.777 41.667 0.00 0.00 0.00 4.49
4294 4533 6.216569 TGACAGAGTCTTAGATCACAAACAC 58.783 40.000 0.00 0.00 33.15 3.32
4295 4534 6.040955 ACTGACAGAGTCTTAGATCACAAACA 59.959 38.462 10.08 0.00 33.15 2.83
4296 4535 6.451393 ACTGACAGAGTCTTAGATCACAAAC 58.549 40.000 10.08 0.00 33.15 2.93
4297 4536 6.656632 ACTGACAGAGTCTTAGATCACAAA 57.343 37.500 10.08 0.00 33.15 2.83
4298 4537 6.260870 GACTGACAGAGTCTTAGATCACAA 57.739 41.667 10.08 0.00 46.85 3.33
4299 4538 5.888691 GACTGACAGAGTCTTAGATCACA 57.111 43.478 10.08 0.00 46.85 3.58
4318 4557 0.319900 CACAACTAGGCAGCGTGACT 60.320 55.000 0.00 0.00 40.22 3.41
4319 4558 1.291877 CCACAACTAGGCAGCGTGAC 61.292 60.000 0.00 0.00 32.67 3.67
4320 4559 1.005037 CCACAACTAGGCAGCGTGA 60.005 57.895 0.00 0.00 32.67 4.35
4321 4560 2.034879 CCCACAACTAGGCAGCGTG 61.035 63.158 0.00 0.00 0.00 5.34
4322 4561 2.347490 CCCACAACTAGGCAGCGT 59.653 61.111 0.00 0.00 0.00 5.07
4340 4579 5.394322 CGCGTCCGGCTTTAAATTAATAAAG 59.606 40.000 0.00 6.41 42.93 1.85
4341 4580 5.163774 ACGCGTCCGGCTTTAAATTAATAAA 60.164 36.000 5.58 0.00 40.44 1.40
4342 4581 4.332268 ACGCGTCCGGCTTTAAATTAATAA 59.668 37.500 5.58 0.00 40.44 1.40
4343 4582 3.870419 ACGCGTCCGGCTTTAAATTAATA 59.130 39.130 5.58 0.00 40.44 0.98
4344 4583 2.679336 ACGCGTCCGGCTTTAAATTAAT 59.321 40.909 5.58 0.00 40.44 1.40
4345 4584 2.075338 ACGCGTCCGGCTTTAAATTAA 58.925 42.857 5.58 0.00 40.44 1.40
4346 4585 1.660104 GACGCGTCCGGCTTTAAATTA 59.340 47.619 28.61 0.00 40.09 1.40
4347 4586 0.445043 GACGCGTCCGGCTTTAAATT 59.555 50.000 28.61 0.00 40.09 1.82
4348 4587 1.363885 GGACGCGTCCGGCTTTAAAT 61.364 55.000 39.77 0.00 43.69 1.40
4349 4588 2.028733 GGACGCGTCCGGCTTTAAA 61.029 57.895 39.77 0.00 43.69 1.52
4350 4589 2.432972 GGACGCGTCCGGCTTTAA 60.433 61.111 39.77 0.00 43.69 1.52
4364 4603 2.342910 TTAGAACGAAGACGCTGGAC 57.657 50.000 0.00 0.00 43.96 4.02
4365 4604 3.374220 TTTTAGAACGAAGACGCTGGA 57.626 42.857 0.00 0.00 43.96 3.86
4395 4634 8.506168 AAGAGCATAATCGGTTAGATCAAAAA 57.494 30.769 0.00 0.00 38.98 1.94
4396 4635 8.506168 AAAGAGCATAATCGGTTAGATCAAAA 57.494 30.769 0.00 0.00 38.98 2.44
4397 4636 9.607988 TTAAAGAGCATAATCGGTTAGATCAAA 57.392 29.630 0.00 0.00 38.98 2.69
4398 4637 9.778741 ATTAAAGAGCATAATCGGTTAGATCAA 57.221 29.630 0.00 0.00 38.98 2.57
4399 4638 9.208022 CATTAAAGAGCATAATCGGTTAGATCA 57.792 33.333 0.00 0.00 38.98 2.92
4400 4639 8.171840 GCATTAAAGAGCATAATCGGTTAGATC 58.828 37.037 0.00 0.00 38.98 2.75
4401 4640 7.661437 TGCATTAAAGAGCATAATCGGTTAGAT 59.339 33.333 0.00 0.00 37.18 1.98
4402 4641 6.989759 TGCATTAAAGAGCATAATCGGTTAGA 59.010 34.615 0.00 0.00 35.51 2.10
4403 4642 7.072030 GTGCATTAAAGAGCATAATCGGTTAG 58.928 38.462 0.00 0.00 43.44 2.34
4404 4643 6.540551 TGTGCATTAAAGAGCATAATCGGTTA 59.459 34.615 0.00 0.00 43.44 2.85
4405 4644 5.356751 TGTGCATTAAAGAGCATAATCGGTT 59.643 36.000 0.00 0.00 43.44 4.44
4406 4645 4.881273 TGTGCATTAAAGAGCATAATCGGT 59.119 37.500 0.00 0.00 43.44 4.69
4407 4646 5.008019 AGTGTGCATTAAAGAGCATAATCGG 59.992 40.000 0.00 0.00 43.44 4.18
4408 4647 5.905733 CAGTGTGCATTAAAGAGCATAATCG 59.094 40.000 0.00 0.00 43.44 3.34
4409 4648 5.684626 GCAGTGTGCATTAAAGAGCATAATC 59.315 40.000 0.00 0.00 44.26 1.75
4410 4649 5.585390 GCAGTGTGCATTAAAGAGCATAAT 58.415 37.500 0.00 0.00 44.26 1.28
4453 4692 0.107993 GCTGCACTGCTGGTATCTCA 60.108 55.000 9.68 0.00 0.00 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.