Multiple sequence alignment - TraesCS7A01G486500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G486500 chr7A 100.000 6714 0 0 1 6714 676989896 676996609 0.000000e+00 12399.0
1 TraesCS7A01G486500 chr7A 94.190 1704 77 15 1237 2936 56821543 56819858 0.000000e+00 2579.0
2 TraesCS7A01G486500 chr7A 94.194 1705 76 10 1237 2937 438518180 438516495 0.000000e+00 2579.0
3 TraesCS7A01G486500 chr7A 91.875 960 62 8 3217 4172 674682484 674681537 0.000000e+00 1327.0
4 TraesCS7A01G486500 chr7A 90.658 942 82 3 5235 6174 677446646 677447583 0.000000e+00 1247.0
5 TraesCS7A01G486500 chr7A 89.597 942 87 8 5235 6173 677616604 677617537 0.000000e+00 1186.0
6 TraesCS7A01G486500 chr7A 89.949 786 60 7 289 1074 677611622 677612388 0.000000e+00 996.0
7 TraesCS7A01G486500 chr7A 89.086 788 78 3 287 1074 677439672 677440451 0.000000e+00 972.0
8 TraesCS7A01G486500 chr7A 90.155 711 56 10 2935 3634 677440524 677441231 0.000000e+00 913.0
9 TraesCS7A01G486500 chr7A 94.649 542 15 2 6173 6714 726212818 726213345 0.000000e+00 828.0
10 TraesCS7A01G486500 chr7A 94.347 513 29 0 3660 4172 677614520 677615032 0.000000e+00 787.0
11 TraesCS7A01G486500 chr7A 93.069 505 35 0 3668 4172 677441208 677441712 0.000000e+00 739.0
12 TraesCS7A01G486500 chr7A 97.704 392 9 0 6174 6565 677000882 677001273 0.000000e+00 675.0
13 TraesCS7A01G486500 chr7A 96.429 392 14 0 6174 6565 726238710 726239101 0.000000e+00 647.0
14 TraesCS7A01G486500 chr7A 95.918 392 16 0 6174 6565 726287879 726288270 2.640000e-178 636.0
15 TraesCS7A01G486500 chr7A 90.931 408 30 4 287 691 675907886 675908289 5.920000e-150 542.0
16 TraesCS7A01G486500 chr7A 92.857 364 25 1 5810 6173 677200536 677200898 1.660000e-145 527.0
17 TraesCS7A01G486500 chr7A 90.789 380 14 6 3266 3634 677614182 677614551 7.830000e-134 488.0
18 TraesCS7A01G486500 chr7A 87.129 404 40 5 4477 4871 675874843 675875243 1.330000e-121 448.0
19 TraesCS7A01G486500 chr7A 86.634 404 42 5 4477 4871 675912718 675913118 2.880000e-118 436.0
20 TraesCS7A01G486500 chr7A 90.909 286 21 3 2935 3215 674682801 674682516 4.910000e-101 379.0
21 TraesCS7A01G486500 chr7A 95.294 170 7 1 1139 1308 438518249 438518081 1.110000e-67 268.0
22 TraesCS7A01G486500 chr7A 84.247 146 9 8 1237 1382 166765098 166764967 5.460000e-26 130.0
23 TraesCS7A01G486500 chr7A 91.071 56 4 1 4170 4224 677441742 677441797 2.600000e-09 75.0
24 TraesCS7A01G486500 chr5A 95.392 1671 55 9 1268 2936 614550943 614549293 0.000000e+00 2639.0
25 TraesCS7A01G486500 chr5A 94.435 1707 72 11 1237 2935 520705080 520703389 0.000000e+00 2604.0
26 TraesCS7A01G486500 chr5A 94.471 1682 73 8 1269 2947 119849981 119848317 0.000000e+00 2573.0
27 TraesCS7A01G486500 chr5A 96.282 1533 48 7 1405 2936 614527593 614526069 0.000000e+00 2507.0
28 TraesCS7A01G486500 chr5A 94.843 1590 74 7 1350 2934 679792430 679794016 0.000000e+00 2475.0
29 TraesCS7A01G486500 chr5A 87.464 343 20 6 1138 1461 624207864 624207526 2.290000e-99 374.0
30 TraesCS7A01G486500 chr5A 94.253 174 9 1 1135 1308 619859578 619859406 1.440000e-66 265.0
31 TraesCS7A01G486500 chr5A 93.642 173 9 2 1137 1308 702845307 702845136 2.400000e-64 257.0
32 TraesCS7A01G486500 chr4A 94.529 1700 72 9 1237 2935 19031891 19030212 0.000000e+00 2604.0
33 TraesCS7A01G486500 chr4A 90.353 425 35 5 6174 6594 163793770 163794192 2.740000e-153 553.0
34 TraesCS7A01G486500 chr4A 93.605 172 10 1 1137 1308 19031962 19031792 8.640000e-64 255.0
35 TraesCS7A01G486500 chr6A 92.893 1815 86 16 1136 2945 522722410 522724186 0.000000e+00 2597.0
36 TraesCS7A01G486500 chr6A 92.816 863 46 10 1135 1995 399253291 399254139 0.000000e+00 1236.0
37 TraesCS7A01G486500 chr6A 90.347 259 24 1 4920 5177 447800166 447799908 8.340000e-89 339.0
38 TraesCS7A01G486500 chr6A 90.347 259 24 1 4920 5177 447802606 447802348 8.340000e-89 339.0
39 TraesCS7A01G486500 chr6A 89.961 259 25 1 4920 5177 447797696 447797438 3.880000e-87 333.0
40 TraesCS7A01G486500 chr6A 89.961 259 25 1 4920 5177 447805073 447804815 3.880000e-87 333.0
41 TraesCS7A01G486500 chr6A 89.961 259 25 1 4920 5177 572765668 572765926 3.880000e-87 333.0
42 TraesCS7A01G486500 chr6A 80.000 200 25 11 6515 6709 19599483 19599294 4.220000e-27 134.0
43 TraesCS7A01G486500 chr7D 94.085 1251 53 10 2935 4172 586119211 586120453 0.000000e+00 1881.0
44 TraesCS7A01G486500 chr7D 94.388 784 43 1 5390 6173 586109212 586109994 0.000000e+00 1203.0
45 TraesCS7A01G486500 chr7D 94.388 784 43 1 5390 6173 586115437 586116219 0.000000e+00 1203.0
46 TraesCS7A01G486500 chr7D 93.606 782 45 5 5390 6171 586121711 586122487 0.000000e+00 1162.0
47 TraesCS7A01G486500 chr7D 92.893 788 54 2 287 1074 586105369 586106154 0.000000e+00 1144.0
48 TraesCS7A01G486500 chr7D 92.893 788 54 2 287 1074 586112101 586112886 0.000000e+00 1144.0
49 TraesCS7A01G486500 chr7D 92.640 788 56 2 287 1074 586118326 586119111 0.000000e+00 1133.0
50 TraesCS7A01G486500 chr7D 87.850 963 108 5 5213 6171 584214266 584213309 0.000000e+00 1122.0
51 TraesCS7A01G486500 chr7D 94.253 696 28 8 2935 3621 586106254 586106946 0.000000e+00 1053.0
52 TraesCS7A01G486500 chr7D 93.697 714 28 10 2935 3633 586112986 586113697 0.000000e+00 1053.0
53 TraesCS7A01G486500 chr7D 91.492 717 41 11 2935 3634 586023853 586024566 0.000000e+00 968.0
54 TraesCS7A01G486500 chr7D 90.213 705 63 5 367 1068 586023064 586023765 0.000000e+00 915.0
55 TraesCS7A01G486500 chr7D 88.451 710 63 11 4219 4911 586025343 586026050 0.000000e+00 839.0
56 TraesCS7A01G486500 chr7D 95.517 513 23 0 3659 4171 586107441 586107953 0.000000e+00 821.0
57 TraesCS7A01G486500 chr7D 94.615 520 28 0 3652 4171 586113659 586114178 0.000000e+00 806.0
58 TraesCS7A01G486500 chr7D 92.899 507 28 4 3667 4172 582678813 582678314 0.000000e+00 730.0
59 TraesCS7A01G486500 chr7D 92.368 511 31 3 3663 4172 582601602 582601099 0.000000e+00 721.0
60 TraesCS7A01G486500 chr7D 93.305 478 31 1 4715 5191 586121183 586121660 0.000000e+00 704.0
61 TraesCS7A01G486500 chr7D 92.887 478 33 1 4715 5191 586114909 586115386 0.000000e+00 693.0
62 TraesCS7A01G486500 chr7D 92.469 478 35 1 4715 5191 586108684 586109161 0.000000e+00 682.0
63 TraesCS7A01G486500 chr7D 93.468 444 29 0 4219 4662 586114467 586114910 0.000000e+00 660.0
64 TraesCS7A01G486500 chr7D 93.243 444 30 0 4219 4662 586120741 586121184 0.000000e+00 654.0
65 TraesCS7A01G486500 chr7D 92.568 444 33 0 4219 4662 586108242 586108685 7.340000e-179 638.0
66 TraesCS7A01G486500 chr7D 88.196 449 44 2 4432 4871 582600024 582599576 1.660000e-145 527.0
67 TraesCS7A01G486500 chr7D 90.220 409 31 4 287 691 584218076 584217673 5.960000e-145 525.0
68 TraesCS7A01G486500 chr7D 90.860 372 21 8 3217 3580 583034334 583033968 2.810000e-133 486.0
69 TraesCS7A01G486500 chr7D 88.265 392 36 3 4490 4871 584591484 584591093 1.710000e-125 460.0
70 TraesCS7A01G486500 chr7D 92.734 289 20 1 1 288 99862941 99863229 3.750000e-112 416.0
71 TraesCS7A01G486500 chr7D 92.708 288 20 1 1 287 613483287 613483574 1.350000e-111 414.0
72 TraesCS7A01G486500 chr7D 92.958 284 18 2 1 283 588991658 588991940 4.850000e-111 412.0
73 TraesCS7A01G486500 chr7D 92.361 288 19 2 1 286 163393799 163393513 2.250000e-109 407.0
74 TraesCS7A01G486500 chr7D 90.278 288 22 4 2935 3216 584277524 584277811 8.220000e-99 372.0
75 TraesCS7A01G486500 chr7D 89.761 293 22 5 2935 3219 582679456 582679164 1.060000e-97 368.0
76 TraesCS7A01G486500 chr7D 89.691 291 24 4 2935 3219 582602685 582602395 3.830000e-97 366.0
77 TraesCS7A01G486500 chr7D 86.335 322 23 10 2935 3235 584217335 584217014 1.400000e-86 331.0
78 TraesCS7A01G486500 chr7D 89.450 218 20 3 4219 4435 583033612 583033397 8.580000e-69 272.0
79 TraesCS7A01G486500 chr7D 97.015 67 2 0 1072 1138 586106197 586106263 5.500000e-21 113.0
80 TraesCS7A01G486500 chr7D 97.015 67 2 0 1072 1138 586119154 586119220 5.500000e-21 113.0
81 TraesCS7A01G486500 chr7D 96.875 64 2 0 1075 1138 583034760 583034697 2.560000e-19 108.0
82 TraesCS7A01G486500 chr7D 95.522 67 3 0 1072 1138 586112929 586112995 2.560000e-19 108.0
83 TraesCS7A01G486500 chr7D 95.385 65 2 1 1075 1138 582602740 582602676 1.190000e-17 102.0
84 TraesCS7A01G486500 chr7D 95.385 65 2 1 1075 1138 582679511 582679447 1.190000e-17 102.0
85 TraesCS7A01G486500 chr7D 96.429 56 1 1 4170 4224 586107984 586108039 2.580000e-14 91.6
86 TraesCS7A01G486500 chr7D 96.429 56 1 1 4170 4224 586120483 586120538 2.580000e-14 91.6
87 TraesCS7A01G486500 chr7D 94.643 56 2 1 4170 4224 586114209 586114264 1.200000e-12 86.1
88 TraesCS7A01G486500 chr7D 91.071 56 4 1 4170 4224 584592275 584592220 2.600000e-09 75.0
89 TraesCS7A01G486500 chr7B 89.256 968 91 5 5207 6172 656303929 656304885 0.000000e+00 1199.0
90 TraesCS7A01G486500 chr7B 87.425 994 93 17 2934 3912 722089642 722088666 0.000000e+00 1114.0
91 TraesCS7A01G486500 chr7B 87.869 948 97 7 5209 6150 651872404 651871469 0.000000e+00 1098.0
92 TraesCS7A01G486500 chr7B 90.416 793 68 6 287 1074 656300823 656301612 0.000000e+00 1037.0
93 TraesCS7A01G486500 chr7B 89.548 708 64 3 4219 4917 656303186 656303892 0.000000e+00 889.0
94 TraesCS7A01G486500 chr7B 89.049 694 46 12 2941 3621 656301718 656302394 0.000000e+00 833.0
95 TraesCS7A01G486500 chr7B 93.567 513 33 0 3660 4172 656302386 656302898 0.000000e+00 765.0
96 TraesCS7A01G486500 chr7B 87.751 449 46 2 4432 4871 652399573 652399125 3.590000e-142 516.0
97 TraesCS7A01G486500 chr7B 87.111 450 47 4 4432 4871 652437767 652437319 3.620000e-137 499.0
98 TraesCS7A01G486500 chr7B 89.655 290 23 5 2935 3219 652174644 652174357 4.950000e-96 363.0
99 TraesCS7A01G486500 chr7B 89.868 227 22 1 848 1074 652401897 652401672 2.370000e-74 291.0
100 TraesCS7A01G486500 chr7B 85.263 285 34 2 4432 4708 708673763 708673479 3.060000e-73 287.0
101 TraesCS7A01G486500 chr7B 89.427 227 23 1 848 1074 652440132 652439907 1.100000e-72 285.0
102 TraesCS7A01G486500 chr7B 90.367 218 17 4 4219 4435 652438239 652438025 3.960000e-72 283.0
103 TraesCS7A01G486500 chr7B 89.498 219 18 4 4219 4435 652172972 652172757 8.580000e-69 272.0
104 TraesCS7A01G486500 chr7B 89.450 218 20 3 4220 4435 708674557 708674341 8.580000e-69 272.0
105 TraesCS7A01G486500 chr7B 96.923 65 1 1 1075 1138 652174700 652174636 2.560000e-19 108.0
106 TraesCS7A01G486500 chr7B 95.238 63 3 0 1076 1138 652401613 652401551 4.280000e-17 100.0
107 TraesCS7A01G486500 chr7B 95.238 63 3 0 1076 1138 652439848 652439786 4.280000e-17 100.0
108 TraesCS7A01G486500 chr7B 93.878 49 3 0 4170 4218 652057366 652057318 2.600000e-09 75.0
109 TraesCS7A01G486500 chr7B 91.071 56 4 1 4170 4224 652400312 652400257 2.600000e-09 75.0
110 TraesCS7A01G486500 chr7B 91.071 56 4 1 4170 4224 656302928 656302983 2.600000e-09 75.0
111 TraesCS7A01G486500 chr7B 91.071 56 4 1 4170 4224 708674816 708674761 2.600000e-09 75.0
112 TraesCS7A01G486500 chr2A 92.236 747 45 3 1140 1885 707104564 707103830 0.000000e+00 1046.0
113 TraesCS7A01G486500 chr2A 90.433 439 32 8 6159 6594 203732596 203732165 2.720000e-158 569.0
114 TraesCS7A01G486500 chr2A 94.220 173 9 1 1136 1308 686664297 686664468 5.160000e-66 263.0
115 TraesCS7A01G486500 chr2A 93.143 175 10 2 1135 1308 122048597 122048424 8.640000e-64 255.0
116 TraesCS7A01G486500 chr2D 88.352 704 71 9 5208 5906 107821534 107820837 0.000000e+00 835.0
117 TraesCS7A01G486500 chr2D 89.098 266 24 3 2948 3208 107837912 107837647 6.490000e-85 326.0
118 TraesCS7A01G486500 chr4B 94.291 543 28 3 6174 6714 660168507 660169048 0.000000e+00 828.0
119 TraesCS7A01G486500 chr3B 92.857 546 35 4 6171 6714 828387419 828387962 0.000000e+00 789.0
120 TraesCS7A01G486500 chr5D 92.294 545 28 9 6172 6714 401400041 401399509 0.000000e+00 761.0
121 TraesCS7A01G486500 chr4D 92.414 290 22 0 1 290 486511313 486511024 1.350000e-111 414.0
122 TraesCS7A01G486500 chr6D 92.388 289 22 0 1 289 70616278 70616566 4.850000e-111 412.0
123 TraesCS7A01G486500 chr3D 92.361 288 20 2 1 287 573513222 573512936 6.270000e-110 409.0
124 TraesCS7A01G486500 chr3A 92.308 286 22 0 1 286 658484181 658484466 2.250000e-109 407.0
125 TraesCS7A01G486500 chr3A 86.538 208 11 9 1271 1475 626070991 626070798 5.270000e-51 213.0
126 TraesCS7A01G486500 chr1D 92.580 283 21 0 1 283 441001157 441001439 2.250000e-109 407.0
127 TraesCS7A01G486500 chr1A 90.347 259 24 1 4920 5177 50523462 50523720 8.340000e-89 339.0
128 TraesCS7A01G486500 chr6B 92.701 137 10 0 6578 6714 18180782 18180646 1.480000e-46 198.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G486500 chr7A 676989896 676996609 6713 False 12399.000000 12399 100.000000 1 6714 1 chr7A.!!$F4 6713
1 TraesCS7A01G486500 chr7A 56819858 56821543 1685 True 2579.000000 2579 94.190000 1237 2936 1 chr7A.!!$R1 1699
2 TraesCS7A01G486500 chr7A 438516495 438518249 1754 True 1423.500000 2579 94.744000 1139 2937 2 chr7A.!!$R3 1798
3 TraesCS7A01G486500 chr7A 677446646 677447583 937 False 1247.000000 1247 90.658000 5235 6174 1 chr7A.!!$F7 939
4 TraesCS7A01G486500 chr7A 677611622 677617537 5915 False 864.250000 1186 91.170500 289 6173 4 chr7A.!!$F12 5884
5 TraesCS7A01G486500 chr7A 674681537 674682801 1264 True 853.000000 1327 91.392000 2935 4172 2 chr7A.!!$R4 1237
6 TraesCS7A01G486500 chr7A 726212818 726213345 527 False 828.000000 828 94.649000 6173 6714 1 chr7A.!!$F8 541
7 TraesCS7A01G486500 chr7A 677439672 677441797 2125 False 674.750000 972 90.845250 287 4224 4 chr7A.!!$F11 3937
8 TraesCS7A01G486500 chr5A 614549293 614550943 1650 True 2639.000000 2639 95.392000 1268 2936 1 chr5A.!!$R4 1668
9 TraesCS7A01G486500 chr5A 520703389 520705080 1691 True 2604.000000 2604 94.435000 1237 2935 1 chr5A.!!$R2 1698
10 TraesCS7A01G486500 chr5A 119848317 119849981 1664 True 2573.000000 2573 94.471000 1269 2947 1 chr5A.!!$R1 1678
11 TraesCS7A01G486500 chr5A 614526069 614527593 1524 True 2507.000000 2507 96.282000 1405 2936 1 chr5A.!!$R3 1531
12 TraesCS7A01G486500 chr5A 679792430 679794016 1586 False 2475.000000 2475 94.843000 1350 2934 1 chr5A.!!$F1 1584
13 TraesCS7A01G486500 chr4A 19030212 19031962 1750 True 1429.500000 2604 94.067000 1137 2935 2 chr4A.!!$R1 1798
14 TraesCS7A01G486500 chr6A 522722410 522724186 1776 False 2597.000000 2597 92.893000 1136 2945 1 chr6A.!!$F2 1809
15 TraesCS7A01G486500 chr6A 399253291 399254139 848 False 1236.000000 1236 92.816000 1135 1995 1 chr6A.!!$F1 860
16 TraesCS7A01G486500 chr6A 447797438 447805073 7635 True 336.000000 339 90.154000 4920 5177 4 chr6A.!!$R2 257
17 TraesCS7A01G486500 chr7D 586023064 586026050 2986 False 907.333333 968 90.052000 367 4911 3 chr7D.!!$F5 4544
18 TraesCS7A01G486500 chr7D 586105369 586122487 17118 False 749.447826 1881 94.259478 287 6173 23 chr7D.!!$F6 5886
19 TraesCS7A01G486500 chr7D 584213309 584218076 4767 True 659.333333 1122 88.135000 287 6171 3 chr7D.!!$R5 5884
20 TraesCS7A01G486500 chr7D 582599576 582602740 3164 True 429.000000 721 91.410000 1075 4871 4 chr7D.!!$R2 3796
21 TraesCS7A01G486500 chr7D 582678314 582679511 1197 True 400.000000 730 92.681667 1075 4172 3 chr7D.!!$R3 3097
22 TraesCS7A01G486500 chr7D 583033397 583034760 1363 True 288.666667 486 92.395000 1075 4435 3 chr7D.!!$R4 3360
23 TraesCS7A01G486500 chr7D 584591093 584592275 1182 True 267.500000 460 89.668000 4170 4871 2 chr7D.!!$R6 701
24 TraesCS7A01G486500 chr7B 722088666 722089642 976 True 1114.000000 1114 87.425000 2934 3912 1 chr7B.!!$R3 978
25 TraesCS7A01G486500 chr7B 651871469 651872404 935 True 1098.000000 1098 87.869000 5209 6150 1 chr7B.!!$R1 941
26 TraesCS7A01G486500 chr7B 656300823 656304885 4062 False 799.666667 1199 90.484500 287 6172 6 chr7B.!!$F1 5885
27 TraesCS7A01G486500 chr7B 652437319 652440132 2813 True 291.750000 499 90.535750 848 4871 4 chr7B.!!$R6 4023
28 TraesCS7A01G486500 chr7B 652172757 652174700 1943 True 247.666667 363 92.025333 1075 4435 3 chr7B.!!$R4 3360
29 TraesCS7A01G486500 chr7B 652399125 652401897 2772 True 245.500000 516 90.982000 848 4871 4 chr7B.!!$R5 4023
30 TraesCS7A01G486500 chr7B 708673479 708674816 1337 True 211.333333 287 88.594667 4170 4708 3 chr7B.!!$R7 538
31 TraesCS7A01G486500 chr2A 707103830 707104564 734 True 1046.000000 1046 92.236000 1140 1885 1 chr2A.!!$R3 745
32 TraesCS7A01G486500 chr2D 107820837 107821534 697 True 835.000000 835 88.352000 5208 5906 1 chr2D.!!$R1 698
33 TraesCS7A01G486500 chr4B 660168507 660169048 541 False 828.000000 828 94.291000 6174 6714 1 chr4B.!!$F1 540
34 TraesCS7A01G486500 chr3B 828387419 828387962 543 False 789.000000 789 92.857000 6171 6714 1 chr3B.!!$F1 543
35 TraesCS7A01G486500 chr5D 401399509 401400041 532 True 761.000000 761 92.294000 6172 6714 1 chr5D.!!$R1 542

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
28 29 0.035739 GTGGCTGGAACCGGAACTAA 59.964 55.0 9.46 0.00 0.00 2.24 F
130 131 0.035739 GTGCTAGGAACCGGGACAAA 59.964 55.0 6.32 0.00 0.00 2.83 F
148 149 0.036010 AATGGGTCCAGACGAAGCAG 60.036 55.0 0.00 0.00 0.00 4.24 F
822 830 0.037160 TCCTAAACCGGCCAGAAACC 59.963 55.0 0.00 0.00 0.00 3.27 F
1270 1343 0.533032 CTTTCCCTCACGTCCTCCTC 59.467 60.0 0.00 0.00 0.00 3.71 F
1417 1510 0.706433 ATGGTCCCACATGCCTTCTT 59.294 50.0 0.00 0.00 0.00 2.52 F
2989 3105 0.892063 TGCATCGGTGTGCTAGTACA 59.108 50.0 9.84 9.84 45.27 2.90 F
4675 9780 0.034477 CGGCCCCTCCACTACATTTT 60.034 55.0 0.00 0.00 34.01 1.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1229 1302 0.391263 AAGAAATCGGGAGGTCGTGC 60.391 55.000 0.00 0.00 0.00 5.34 R
1231 1304 1.066358 GGAAAGAAATCGGGAGGTCGT 60.066 52.381 0.00 0.00 0.00 4.34 R
1232 1305 1.207329 AGGAAAGAAATCGGGAGGTCG 59.793 52.381 0.00 0.00 0.00 4.79 R
2736 2850 2.038387 AACTGCCACTTCTTCACGTT 57.962 45.000 0.00 0.00 0.00 3.99 R
3134 3320 0.512518 TTGAAGTCATCACAAGCGCG 59.487 50.000 0.00 0.00 37.92 6.86 R
3381 5141 3.652869 CCCCCTAATTGAGAATGGCTAGA 59.347 47.826 0.00 0.00 0.00 2.43 R
4678 9783 0.035534 TCGCCTATTGCTGAGCCAAA 60.036 50.000 0.23 0.00 38.05 3.28 R
6336 31225 1.183030 TAGTGCCATACCGATCGGGG 61.183 60.000 35.87 27.52 41.60 5.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.525629 TCCTGGTTCGTGGCTGGA 60.526 61.111 0.00 0.00 0.00 3.86
18 19 2.144078 TCCTGGTTCGTGGCTGGAA 61.144 57.895 0.00 0.00 0.00 3.53
19 20 1.966451 CCTGGTTCGTGGCTGGAAC 60.966 63.158 11.23 11.23 42.32 3.62
22 23 3.047877 GTTCGTGGCTGGAACCGG 61.048 66.667 0.00 0.00 38.23 5.28
23 24 3.235481 TTCGTGGCTGGAACCGGA 61.235 61.111 9.46 0.00 0.00 5.14
24 25 2.809307 TTCGTGGCTGGAACCGGAA 61.809 57.895 9.46 0.00 0.00 4.30
25 26 2.999739 TTCGTGGCTGGAACCGGAAC 63.000 60.000 9.46 0.32 0.00 3.62
26 27 2.430367 GTGGCTGGAACCGGAACT 59.570 61.111 9.46 0.00 0.00 3.01
27 28 1.675219 GTGGCTGGAACCGGAACTA 59.325 57.895 9.46 0.00 0.00 2.24
28 29 0.035739 GTGGCTGGAACCGGAACTAA 59.964 55.000 9.46 0.00 0.00 2.24
29 30 0.766131 TGGCTGGAACCGGAACTAAA 59.234 50.000 9.46 0.00 0.00 1.85
30 31 1.271163 TGGCTGGAACCGGAACTAAAG 60.271 52.381 9.46 0.00 0.00 1.85
31 32 0.803117 GCTGGAACCGGAACTAAAGC 59.197 55.000 9.46 5.61 0.00 3.51
32 33 1.610886 GCTGGAACCGGAACTAAAGCT 60.611 52.381 9.46 0.00 0.00 3.74
33 34 2.347731 CTGGAACCGGAACTAAAGCTC 58.652 52.381 9.46 0.00 0.00 4.09
34 35 1.002773 TGGAACCGGAACTAAAGCTCC 59.997 52.381 9.46 0.01 0.00 4.70
35 36 1.678123 GGAACCGGAACTAAAGCTCCC 60.678 57.143 9.46 0.00 0.00 4.30
36 37 0.327259 AACCGGAACTAAAGCTCCCC 59.673 55.000 9.46 0.00 0.00 4.81
37 38 1.223763 CCGGAACTAAAGCTCCCCC 59.776 63.158 0.00 0.00 0.00 5.40
38 39 1.272554 CCGGAACTAAAGCTCCCCCT 61.273 60.000 0.00 0.00 0.00 4.79
39 40 0.618981 CGGAACTAAAGCTCCCCCTT 59.381 55.000 0.00 0.00 0.00 3.95
40 41 1.835531 CGGAACTAAAGCTCCCCCTTA 59.164 52.381 0.00 0.00 0.00 2.69
41 42 2.438392 CGGAACTAAAGCTCCCCCTTAT 59.562 50.000 0.00 0.00 0.00 1.73
42 43 3.744530 CGGAACTAAAGCTCCCCCTTATG 60.745 52.174 0.00 0.00 0.00 1.90
43 44 3.202373 GGAACTAAAGCTCCCCCTTATGT 59.798 47.826 0.00 0.00 0.00 2.29
44 45 4.452825 GAACTAAAGCTCCCCCTTATGTC 58.547 47.826 0.00 0.00 0.00 3.06
45 46 3.737263 ACTAAAGCTCCCCCTTATGTCT 58.263 45.455 0.00 0.00 0.00 3.41
46 47 3.712218 ACTAAAGCTCCCCCTTATGTCTC 59.288 47.826 0.00 0.00 0.00 3.36
47 48 1.123928 AAGCTCCCCCTTATGTCTCG 58.876 55.000 0.00 0.00 0.00 4.04
48 49 0.760945 AGCTCCCCCTTATGTCTCGG 60.761 60.000 0.00 0.00 0.00 4.63
49 50 1.049289 GCTCCCCCTTATGTCTCGGT 61.049 60.000 0.00 0.00 0.00 4.69
50 51 1.497161 CTCCCCCTTATGTCTCGGTT 58.503 55.000 0.00 0.00 0.00 4.44
51 52 1.413077 CTCCCCCTTATGTCTCGGTTC 59.587 57.143 0.00 0.00 0.00 3.62
52 53 0.104304 CCCCCTTATGTCTCGGTTCG 59.896 60.000 0.00 0.00 0.00 3.95
53 54 1.108776 CCCCTTATGTCTCGGTTCGA 58.891 55.000 0.00 0.00 0.00 3.71
69 70 3.998672 GAGCCACGAACCGGGACA 61.999 66.667 6.32 0.00 28.17 4.02
70 71 3.524648 GAGCCACGAACCGGGACAA 62.525 63.158 6.32 0.00 28.17 3.18
71 72 2.592287 GCCACGAACCGGGACAAA 60.592 61.111 6.32 0.00 28.17 2.83
72 73 1.969589 GCCACGAACCGGGACAAAT 60.970 57.895 6.32 0.00 28.17 2.32
73 74 1.873165 CCACGAACCGGGACAAATG 59.127 57.895 6.32 0.00 28.17 2.32
74 75 0.887387 CCACGAACCGGGACAAATGT 60.887 55.000 6.32 0.00 28.17 2.71
75 76 1.608542 CCACGAACCGGGACAAATGTA 60.609 52.381 6.32 0.00 28.17 2.29
76 77 2.352388 CACGAACCGGGACAAATGTAT 58.648 47.619 6.32 0.00 28.17 2.29
77 78 2.095213 CACGAACCGGGACAAATGTATG 59.905 50.000 6.32 0.00 28.17 2.39
78 79 2.289819 ACGAACCGGGACAAATGTATGT 60.290 45.455 6.32 0.00 35.90 2.29
79 80 2.095213 CGAACCGGGACAAATGTATGTG 59.905 50.000 6.32 0.00 32.57 3.21
80 81 2.122783 ACCGGGACAAATGTATGTGG 57.877 50.000 6.32 0.00 32.57 4.17
81 82 1.340600 ACCGGGACAAATGTATGTGGG 60.341 52.381 6.32 0.00 32.57 4.61
82 83 0.738389 CGGGACAAATGTATGTGGGC 59.262 55.000 0.00 0.00 32.57 5.36
83 84 1.111277 GGGACAAATGTATGTGGGCC 58.889 55.000 0.00 0.00 32.57 5.80
84 85 1.618345 GGGACAAATGTATGTGGGCCA 60.618 52.381 0.00 0.00 32.57 5.36
85 86 1.750778 GGACAAATGTATGTGGGCCAG 59.249 52.381 6.40 0.00 32.57 4.85
86 87 1.750778 GACAAATGTATGTGGGCCAGG 59.249 52.381 6.40 0.00 32.57 4.45
87 88 1.357420 ACAAATGTATGTGGGCCAGGA 59.643 47.619 6.40 0.00 30.82 3.86
88 89 2.026641 CAAATGTATGTGGGCCAGGAG 58.973 52.381 6.40 0.00 0.00 3.69
89 90 0.106519 AATGTATGTGGGCCAGGAGC 60.107 55.000 6.40 0.00 42.60 4.70
90 91 2.203070 GTATGTGGGCCAGGAGCG 60.203 66.667 6.40 0.00 45.17 5.03
91 92 2.364973 TATGTGGGCCAGGAGCGA 60.365 61.111 6.40 0.00 45.17 4.93
92 93 2.434843 TATGTGGGCCAGGAGCGAG 61.435 63.158 6.40 0.00 45.17 5.03
99 100 3.801997 CCAGGAGCGAGGCCCATT 61.802 66.667 0.00 0.00 0.00 3.16
100 101 2.515523 CAGGAGCGAGGCCCATTG 60.516 66.667 0.00 0.00 0.00 2.82
101 102 3.801997 AGGAGCGAGGCCCATTGG 61.802 66.667 0.00 0.00 0.00 3.16
102 103 4.115199 GGAGCGAGGCCCATTGGT 62.115 66.667 0.00 0.00 0.00 3.67
103 104 2.514824 GAGCGAGGCCCATTGGTC 60.515 66.667 0.00 0.00 36.05 4.02
104 105 4.115199 AGCGAGGCCCATTGGTCC 62.115 66.667 0.00 0.00 36.69 4.46
106 107 4.856801 CGAGGCCCATTGGTCCCG 62.857 72.222 0.00 0.00 36.69 5.14
107 108 4.506255 GAGGCCCATTGGTCCCGG 62.506 72.222 0.00 0.00 36.69 5.73
109 110 4.376170 GGCCCATTGGTCCCGGTT 62.376 66.667 0.00 0.00 0.00 4.44
110 111 2.754254 GCCCATTGGTCCCGGTTC 60.754 66.667 0.00 0.00 0.00 3.62
111 112 2.437716 CCCATTGGTCCCGGTTCG 60.438 66.667 0.00 0.00 0.00 3.95
112 113 2.349755 CCATTGGTCCCGGTTCGT 59.650 61.111 0.00 0.00 0.00 3.85
113 114 2.038269 CCATTGGTCCCGGTTCGTG 61.038 63.158 0.00 0.00 0.00 4.35
114 115 2.359478 ATTGGTCCCGGTTCGTGC 60.359 61.111 0.00 0.00 0.00 5.34
115 116 2.890766 ATTGGTCCCGGTTCGTGCT 61.891 57.895 0.00 0.00 0.00 4.40
116 117 1.546589 ATTGGTCCCGGTTCGTGCTA 61.547 55.000 0.00 0.00 0.00 3.49
117 118 2.162338 TTGGTCCCGGTTCGTGCTAG 62.162 60.000 0.00 0.00 0.00 3.42
118 119 2.183555 GTCCCGGTTCGTGCTAGG 59.816 66.667 0.00 0.00 0.00 3.02
119 120 2.036098 TCCCGGTTCGTGCTAGGA 59.964 61.111 0.00 0.00 0.00 2.94
120 121 1.607178 TCCCGGTTCGTGCTAGGAA 60.607 57.895 0.00 0.00 0.00 3.36
121 122 1.447314 CCCGGTTCGTGCTAGGAAC 60.447 63.158 0.00 11.04 40.97 3.62
124 125 4.180496 GTTCGTGCTAGGAACCGG 57.820 61.111 0.00 0.00 37.10 5.28
125 126 1.447314 GTTCGTGCTAGGAACCGGG 60.447 63.158 6.32 0.00 37.10 5.73
126 127 1.607178 TTCGTGCTAGGAACCGGGA 60.607 57.895 6.32 0.00 0.00 5.14
127 128 1.880819 TTCGTGCTAGGAACCGGGAC 61.881 60.000 6.32 0.00 0.00 4.46
128 129 2.642254 CGTGCTAGGAACCGGGACA 61.642 63.158 6.32 0.00 0.00 4.02
129 130 1.675219 GTGCTAGGAACCGGGACAA 59.325 57.895 6.32 0.00 0.00 3.18
130 131 0.035739 GTGCTAGGAACCGGGACAAA 59.964 55.000 6.32 0.00 0.00 2.83
131 132 0.988832 TGCTAGGAACCGGGACAAAT 59.011 50.000 6.32 0.00 0.00 2.32
132 133 1.339631 TGCTAGGAACCGGGACAAATG 60.340 52.381 6.32 0.00 0.00 2.32
133 134 2.017113 GCTAGGAACCGGGACAAATGG 61.017 57.143 6.32 0.00 0.00 3.16
134 135 0.621609 TAGGAACCGGGACAAATGGG 59.378 55.000 6.32 0.00 0.00 4.00
135 136 1.076014 GGAACCGGGACAAATGGGT 59.924 57.895 6.32 0.00 0.00 4.51
136 137 0.963856 GGAACCGGGACAAATGGGTC 60.964 60.000 6.32 0.00 38.82 4.46
143 144 3.927555 GACAAATGGGTCCAGACGA 57.072 52.632 0.00 0.00 0.00 4.20
144 145 2.178912 GACAAATGGGTCCAGACGAA 57.821 50.000 0.00 0.00 0.00 3.85
145 146 2.076863 GACAAATGGGTCCAGACGAAG 58.923 52.381 0.00 0.00 0.00 3.79
146 147 0.804989 CAAATGGGTCCAGACGAAGC 59.195 55.000 0.00 0.00 0.00 3.86
147 148 0.400213 AAATGGGTCCAGACGAAGCA 59.600 50.000 0.00 0.00 0.00 3.91
148 149 0.036010 AATGGGTCCAGACGAAGCAG 60.036 55.000 0.00 0.00 0.00 4.24
149 150 1.903877 ATGGGTCCAGACGAAGCAGG 61.904 60.000 0.00 0.00 0.00 4.85
150 151 2.283529 GGGTCCAGACGAAGCAGGA 61.284 63.158 0.00 0.00 0.00 3.86
151 152 4.580835 GTCCAGACGAAGCAGGAC 57.419 61.111 0.00 0.00 43.18 3.85
152 153 1.079750 GTCCAGACGAAGCAGGACC 60.080 63.158 0.00 0.00 43.67 4.46
153 154 1.533033 TCCAGACGAAGCAGGACCA 60.533 57.895 0.00 0.00 0.00 4.02
154 155 1.118965 TCCAGACGAAGCAGGACCAA 61.119 55.000 0.00 0.00 0.00 3.67
155 156 0.036010 CCAGACGAAGCAGGACCAAT 60.036 55.000 0.00 0.00 0.00 3.16
156 157 1.081892 CAGACGAAGCAGGACCAATG 58.918 55.000 0.00 0.00 0.00 2.82
157 158 0.674895 AGACGAAGCAGGACCAATGC 60.675 55.000 0.00 0.00 44.18 3.56
158 159 1.648467 GACGAAGCAGGACCAATGCC 61.648 60.000 2.19 0.00 44.97 4.40
159 160 2.409870 CGAAGCAGGACCAATGCCC 61.410 63.158 2.19 0.00 44.97 5.36
160 161 1.304381 GAAGCAGGACCAATGCCCA 60.304 57.895 2.19 0.00 44.97 5.36
161 162 1.598701 GAAGCAGGACCAATGCCCAC 61.599 60.000 2.19 0.00 44.97 4.61
162 163 3.070576 GCAGGACCAATGCCCACC 61.071 66.667 0.00 0.00 37.73 4.61
163 164 2.440147 CAGGACCAATGCCCACCA 59.560 61.111 0.00 0.00 0.00 4.17
164 165 1.679977 CAGGACCAATGCCCACCAG 60.680 63.158 0.00 0.00 0.00 4.00
165 166 2.362889 GGACCAATGCCCACCAGG 60.363 66.667 0.00 0.00 39.47 4.45
211 212 2.854032 CGGGAGGTATGCCCCCAT 60.854 66.667 20.93 0.00 42.92 4.00
212 213 2.846532 GGGAGGTATGCCCCCATG 59.153 66.667 17.76 0.00 41.88 3.66
213 214 2.845345 GGGAGGTATGCCCCCATGG 61.845 68.421 17.76 4.14 41.88 3.66
223 224 4.123545 CCCCATGGGTCCCGGTTC 62.124 72.222 29.33 0.00 38.25 3.62
224 225 4.483243 CCCATGGGTCCCGGTTCG 62.483 72.222 23.93 0.00 0.00 3.95
225 226 3.712907 CCATGGGTCCCGGTTCGT 61.713 66.667 2.85 0.00 0.00 3.85
226 227 2.435938 CATGGGTCCCGGTTCGTG 60.436 66.667 2.65 0.00 0.00 4.35
227 228 2.605295 ATGGGTCCCGGTTCGTGA 60.605 61.111 2.65 0.00 0.00 4.35
228 229 2.951101 ATGGGTCCCGGTTCGTGAC 61.951 63.158 2.65 0.00 33.83 3.67
229 230 3.308705 GGGTCCCGGTTCGTGACT 61.309 66.667 0.00 0.00 34.89 3.41
230 231 2.048503 GGTCCCGGTTCGTGACTG 60.049 66.667 0.00 0.00 34.89 3.51
236 237 2.048503 GGTTCGTGACTGGACCGG 60.049 66.667 0.00 0.00 0.00 5.28
237 238 2.048503 GTTCGTGACTGGACCGGG 60.049 66.667 6.32 0.00 0.00 5.73
238 239 2.203523 TTCGTGACTGGACCGGGA 60.204 61.111 6.32 0.00 0.00 5.14
239 240 2.567497 TTCGTGACTGGACCGGGAC 61.567 63.158 6.32 0.00 0.00 4.46
240 241 2.989173 TTCGTGACTGGACCGGGACT 62.989 60.000 6.32 0.00 0.00 3.85
241 242 1.676635 CGTGACTGGACCGGGACTA 60.677 63.158 6.32 0.00 0.00 2.59
242 243 1.246056 CGTGACTGGACCGGGACTAA 61.246 60.000 6.32 0.00 0.00 2.24
243 244 1.192428 GTGACTGGACCGGGACTAAT 58.808 55.000 6.32 0.00 0.00 1.73
244 245 1.134788 GTGACTGGACCGGGACTAATG 60.135 57.143 6.32 0.00 0.00 1.90
245 246 0.464452 GACTGGACCGGGACTAATGG 59.536 60.000 6.32 0.00 0.00 3.16
246 247 0.042131 ACTGGACCGGGACTAATGGA 59.958 55.000 6.32 0.00 0.00 3.41
247 248 0.464452 CTGGACCGGGACTAATGGAC 59.536 60.000 6.32 0.00 0.00 4.02
248 249 0.042131 TGGACCGGGACTAATGGACT 59.958 55.000 6.32 0.00 0.00 3.85
249 250 0.464452 GGACCGGGACTAATGGACTG 59.536 60.000 6.32 0.00 0.00 3.51
250 251 1.481871 GACCGGGACTAATGGACTGA 58.518 55.000 6.32 0.00 0.00 3.41
251 252 1.136500 GACCGGGACTAATGGACTGAC 59.864 57.143 6.32 0.00 0.00 3.51
252 253 0.464452 CCGGGACTAATGGACTGACC 59.536 60.000 0.00 0.00 39.54 4.02
260 261 2.618139 TGGACTGACCAGACCCCA 59.382 61.111 14.15 10.03 44.64 4.96
261 262 1.074090 TGGACTGACCAGACCCCAA 60.074 57.895 14.15 0.00 44.64 4.12
262 263 1.375326 GGACTGACCAGACCCCAAC 59.625 63.158 3.76 0.00 37.30 3.77
263 264 1.375326 GACTGACCAGACCCCAACC 59.625 63.158 3.76 0.00 0.00 3.77
264 265 1.385347 ACTGACCAGACCCCAACCA 60.385 57.895 3.76 0.00 0.00 3.67
265 266 0.991355 ACTGACCAGACCCCAACCAA 60.991 55.000 3.76 0.00 0.00 3.67
266 267 0.184933 CTGACCAGACCCCAACCAAA 59.815 55.000 0.00 0.00 0.00 3.28
267 268 0.184933 TGACCAGACCCCAACCAAAG 59.815 55.000 0.00 0.00 0.00 2.77
268 269 1.152546 ACCAGACCCCAACCAAAGC 60.153 57.895 0.00 0.00 0.00 3.51
269 270 1.908299 CCAGACCCCAACCAAAGCC 60.908 63.158 0.00 0.00 0.00 4.35
270 271 1.908299 CAGACCCCAACCAAAGCCC 60.908 63.158 0.00 0.00 0.00 5.19
271 272 2.091283 AGACCCCAACCAAAGCCCT 61.091 57.895 0.00 0.00 0.00 5.19
272 273 1.908299 GACCCCAACCAAAGCCCTG 60.908 63.158 0.00 0.00 0.00 4.45
273 274 2.201210 CCCCAACCAAAGCCCTGT 59.799 61.111 0.00 0.00 0.00 4.00
274 275 1.459348 CCCCAACCAAAGCCCTGTT 60.459 57.895 0.00 0.00 0.00 3.16
275 276 1.053835 CCCCAACCAAAGCCCTGTTT 61.054 55.000 0.00 0.00 0.00 2.83
276 277 0.836606 CCCAACCAAAGCCCTGTTTT 59.163 50.000 0.00 0.00 0.00 2.43
277 278 1.211703 CCCAACCAAAGCCCTGTTTTT 59.788 47.619 0.00 0.00 0.00 1.94
314 315 5.959512 ACTATATGAGTAGGTTGAGAGCCT 58.040 41.667 0.00 0.00 36.27 4.58
385 386 1.860641 TGGCGGAGGATCAGAAACTA 58.139 50.000 0.00 0.00 36.25 2.24
408 409 8.682710 ACTAAAACTGAAACACACACATACAAT 58.317 29.630 0.00 0.00 0.00 2.71
483 487 5.618418 CGAGTGTATTAGTGGACAAACGAGA 60.618 44.000 0.00 0.00 32.17 4.04
675 683 5.474532 TGTTTACGGACTCTTAGTGCTTCTA 59.525 40.000 0.00 0.00 34.11 2.10
696 704 1.549170 TCGGAAAACACTAGGGCTCTC 59.451 52.381 0.00 0.00 0.00 3.20
708 716 1.228510 GGCTCTCCTTGGAATGGGG 59.771 63.158 0.00 0.00 31.57 4.96
723 731 5.047235 TGGAATGGGGGTAAATTTTTACACG 60.047 40.000 13.55 0.00 45.66 4.49
754 762 4.513198 TTTACAGGTGCAAATTACTGGC 57.487 40.909 0.00 0.00 35.34 4.85
799 807 2.561419 TGAAAACTACAGGAGGAGGTCG 59.439 50.000 0.00 0.00 0.00 4.79
822 830 0.037160 TCCTAAACCGGCCAGAAACC 59.963 55.000 0.00 0.00 0.00 3.27
919 930 9.841880 ACTAGGTATGCGATATTATATATTGCG 57.158 33.333 12.09 0.00 37.18 4.85
960 971 1.032014 ACCAAACTGCTCGCACATTT 58.968 45.000 0.00 0.00 0.00 2.32
1038 1054 3.056250 AGAATCTCTGTGTGATCGTGCTT 60.056 43.478 0.00 0.00 0.00 3.91
1114 1187 1.578897 TGGCTGGTTCATGCTACCTA 58.421 50.000 15.21 4.49 36.60 3.08
1115 1188 2.126882 TGGCTGGTTCATGCTACCTAT 58.873 47.619 15.21 0.00 36.60 2.57
1116 1189 3.313791 TGGCTGGTTCATGCTACCTATA 58.686 45.455 15.21 0.00 36.60 1.31
1117 1190 3.909995 TGGCTGGTTCATGCTACCTATAT 59.090 43.478 15.21 0.00 36.60 0.86
1118 1191 4.350816 TGGCTGGTTCATGCTACCTATATT 59.649 41.667 15.21 0.00 36.60 1.28
1119 1192 5.546110 TGGCTGGTTCATGCTACCTATATTA 59.454 40.000 15.21 0.00 36.60 0.98
1120 1193 6.043822 TGGCTGGTTCATGCTACCTATATTAA 59.956 38.462 15.21 0.00 36.60 1.40
1121 1194 7.112779 GGCTGGTTCATGCTACCTATATTAAT 58.887 38.462 15.21 0.00 36.60 1.40
1122 1195 8.265055 GGCTGGTTCATGCTACCTATATTAATA 58.735 37.037 15.21 0.00 36.60 0.98
1123 1196 9.838339 GCTGGTTCATGCTACCTATATTAATAT 57.162 33.333 12.51 12.51 36.60 1.28
1172 1245 1.795170 GCAACCGTGTGGCAGATTGT 61.795 55.000 0.00 0.00 39.70 2.71
1177 1250 1.541147 CCGTGTGGCAGATTGTGAAAT 59.459 47.619 0.00 0.00 0.00 2.17
1205 1278 1.469595 CGCATCCAACGCCATCAATTT 60.470 47.619 0.00 0.00 0.00 1.82
1217 1290 4.677779 CGCCATCAATTTTCTCCCGATTTT 60.678 41.667 0.00 0.00 0.00 1.82
1218 1291 4.805719 GCCATCAATTTTCTCCCGATTTTC 59.194 41.667 0.00 0.00 0.00 2.29
1219 1292 5.394553 GCCATCAATTTTCTCCCGATTTTCT 60.395 40.000 0.00 0.00 0.00 2.52
1220 1293 6.633856 CCATCAATTTTCTCCCGATTTTCTT 58.366 36.000 0.00 0.00 0.00 2.52
1221 1294 6.753744 CCATCAATTTTCTCCCGATTTTCTTC 59.246 38.462 0.00 0.00 0.00 2.87
1222 1295 6.267496 TCAATTTTCTCCCGATTTTCTTCC 57.733 37.500 0.00 0.00 0.00 3.46
1223 1296 6.010219 TCAATTTTCTCCCGATTTTCTTCCT 58.990 36.000 0.00 0.00 0.00 3.36
1224 1297 6.493458 TCAATTTTCTCCCGATTTTCTTCCTT 59.507 34.615 0.00 0.00 0.00 3.36
1225 1298 6.918067 ATTTTCTCCCGATTTTCTTCCTTT 57.082 33.333 0.00 0.00 0.00 3.11
1226 1299 6.724893 TTTTCTCCCGATTTTCTTCCTTTT 57.275 33.333 0.00 0.00 0.00 2.27
1227 1300 5.959618 TTCTCCCGATTTTCTTCCTTTTC 57.040 39.130 0.00 0.00 0.00 2.29
1228 1301 4.332828 TCTCCCGATTTTCTTCCTTTTCC 58.667 43.478 0.00 0.00 0.00 3.13
1229 1302 3.078837 TCCCGATTTTCTTCCTTTTCCG 58.921 45.455 0.00 0.00 0.00 4.30
1230 1303 2.415491 CCCGATTTTCTTCCTTTTCCGC 60.415 50.000 0.00 0.00 0.00 5.54
1231 1304 2.227865 CCGATTTTCTTCCTTTTCCGCA 59.772 45.455 0.00 0.00 0.00 5.69
1232 1305 3.234386 CGATTTTCTTCCTTTTCCGCAC 58.766 45.455 0.00 0.00 0.00 5.34
1233 1306 2.766970 TTTTCTTCCTTTTCCGCACG 57.233 45.000 0.00 0.00 0.00 5.34
1234 1307 1.956297 TTTCTTCCTTTTCCGCACGA 58.044 45.000 0.00 0.00 0.00 4.35
1235 1308 1.223187 TTCTTCCTTTTCCGCACGAC 58.777 50.000 0.00 0.00 0.00 4.34
1247 1320 1.218316 GCACGACCTCCCGATTTCT 59.782 57.895 0.00 0.00 0.00 2.52
1269 1342 0.905337 CCTTTCCCTCACGTCCTCCT 60.905 60.000 0.00 0.00 0.00 3.69
1270 1343 0.533032 CTTTCCCTCACGTCCTCCTC 59.467 60.000 0.00 0.00 0.00 3.71
1271 1344 0.903454 TTTCCCTCACGTCCTCCTCC 60.903 60.000 0.00 0.00 0.00 4.30
1288 1361 3.587506 TCCTCCGATTTCTTTCCTTTCCT 59.412 43.478 0.00 0.00 0.00 3.36
1340 1413 4.125695 CGTCCTCCCCGAACGTCC 62.126 72.222 0.00 0.00 0.00 4.79
1417 1510 0.706433 ATGGTCCCACATGCCTTCTT 59.294 50.000 0.00 0.00 0.00 2.52
1574 1668 6.449635 TTGCCTTTAATATGTTAGCACTGG 57.550 37.500 0.00 0.00 0.00 4.00
1711 1807 9.516314 CTGATAGTTTAGATACAAACATCGTGA 57.484 33.333 1.99 0.00 40.22 4.35
1729 1825 5.806818 TCGTGATAACTTTAACCATTGGGA 58.193 37.500 7.78 0.00 38.05 4.37
1826 1922 3.780294 TGAGGTAGAAGCACCATGGTAAT 59.220 43.478 19.28 6.08 41.40 1.89
2561 2674 7.812191 TGTAAGTACGACGGTATTTTACACATT 59.188 33.333 0.00 0.00 37.03 2.71
2607 2721 7.210873 ACAAAACACAGTGGTAACTTTGAAAA 58.789 30.769 5.31 0.00 36.39 2.29
2708 2822 8.621532 AACTTGCATACGAATATCATGGTAAT 57.378 30.769 0.00 0.00 0.00 1.89
2736 2850 4.782691 TCCTGAGGAGAAATCATGTGGTAA 59.217 41.667 0.00 0.00 0.00 2.85
2989 3105 0.892063 TGCATCGGTGTGCTAGTACA 59.108 50.000 9.84 9.84 45.27 2.90
3026 3155 4.492160 GCAGTCGGCGTCCATCGA 62.492 66.667 6.85 0.00 42.86 3.59
3046 3229 3.494626 CGAATACTCTTTGCACACACACT 59.505 43.478 0.00 0.00 0.00 3.55
3134 3320 2.693074 TGAAAGCCCAACACCTTTTCTC 59.307 45.455 0.00 0.00 31.85 2.87
3163 3350 5.308014 TGTGATGACTTCAAATGCTACTGT 58.692 37.500 0.00 0.00 35.70 3.55
3317 5072 7.549488 CACCCCTGCTATGCTAGTTAAATATAC 59.451 40.741 0.00 0.00 0.00 1.47
3381 5141 4.170468 AGGATCGATTACAAAAGGGCAT 57.830 40.909 0.00 0.00 0.00 4.40
3526 5291 5.655090 ACTTTTGTTTGCCTAGTGGTACTTT 59.345 36.000 0.00 0.00 35.27 2.66
3621 5386 1.136565 GCACACACACACACACACC 59.863 57.895 0.00 0.00 0.00 4.16
3622 5387 1.581727 GCACACACACACACACACCA 61.582 55.000 0.00 0.00 0.00 4.17
3624 5389 1.472082 CACACACACACACACACCAAT 59.528 47.619 0.00 0.00 0.00 3.16
3625 5390 1.472082 ACACACACACACACACCAATG 59.528 47.619 0.00 0.00 0.00 2.82
3628 5393 1.067364 CACACACACACACCAATGCAT 59.933 47.619 0.00 0.00 0.00 3.96
3632 5397 2.293122 ACACACACACCAATGCATACAC 59.707 45.455 0.00 0.00 0.00 2.90
3712 7757 1.904287 TTCGATTTGTCCCACCAAGG 58.096 50.000 0.00 0.00 37.03 3.61
4156 8423 8.692710 CACTATTAGTTAACATGAGGTCCAGTA 58.307 37.037 8.61 0.00 0.00 2.74
4228 9328 8.911247 AAGAACCAGTTAAAATAAATGATCGC 57.089 30.769 0.00 0.00 0.00 4.58
4238 9338 7.490962 AAAATAAATGATCGCGGAGAATACA 57.509 32.000 6.13 0.00 0.00 2.29
4283 9388 8.627403 ACAGCACAGATAAAAATATCCATCAAG 58.373 33.333 0.00 0.00 0.00 3.02
4357 9462 3.548268 GCGCTAATCGGCAATACTAGATC 59.452 47.826 0.00 0.00 38.94 2.75
4413 9518 0.251653 TCCCTAAGCCGTCAGTGAGT 60.252 55.000 0.00 0.00 0.00 3.41
4436 9541 6.935208 AGTAAGATTCACTGTTGGGTCTTAAC 59.065 38.462 0.00 0.00 34.11 2.01
4448 9553 2.484889 GGTCTTAACCCTCGCATCATC 58.515 52.381 0.00 0.00 39.93 2.92
4473 9578 8.112822 TCACAATTTTTGGATCCTTATGACCTA 58.887 33.333 14.23 0.00 34.12 3.08
4500 9605 3.674997 TCCTTACTTTCAGTGATGCCAC 58.325 45.455 0.00 0.00 43.50 5.01
4517 9622 7.764443 GTGATGCCACGTATTACTATTGGATAT 59.236 37.037 9.15 4.27 33.10 1.63
4532 9637 3.252974 GGATATATCCAAGAGCCCACG 57.747 52.381 24.41 0.00 46.38 4.94
4537 9642 1.274703 ATCCAAGAGCCCACGGTGAT 61.275 55.000 10.28 0.00 0.00 3.06
4587 9692 2.168106 CTGAGATCCAGTCCCTTGACAG 59.832 54.545 3.72 0.00 44.33 3.51
4605 9710 4.101448 AGCCCAGGCACCGATGAC 62.101 66.667 12.03 0.00 44.88 3.06
4607 9712 3.402681 CCCAGGCACCGATGACCT 61.403 66.667 0.00 0.00 32.13 3.85
4624 9729 1.168407 CCTGTGTGGTGCCTTCACTG 61.168 60.000 14.15 13.34 42.72 3.66
4628 9733 1.374947 GTGGTGCCTTCACTGCCTA 59.625 57.895 0.00 0.00 42.72 3.93
4629 9734 0.035056 GTGGTGCCTTCACTGCCTAT 60.035 55.000 0.00 0.00 42.72 2.57
4646 9751 6.602009 ACTGCCTATACCAATTTTCCTTGTAC 59.398 38.462 0.00 0.00 0.00 2.90
4662 9767 0.750546 GTACAAAAGGATCCGGCCCC 60.751 60.000 5.98 0.00 0.00 5.80
4663 9768 0.917333 TACAAAAGGATCCGGCCCCT 60.917 55.000 5.98 8.45 0.00 4.79
4664 9769 1.453928 CAAAAGGATCCGGCCCCTC 60.454 63.158 13.76 0.46 31.17 4.30
4665 9770 2.690734 AAAAGGATCCGGCCCCTCC 61.691 63.158 13.76 9.03 31.17 4.30
4666 9771 3.962530 AAAGGATCCGGCCCCTCCA 62.963 63.158 13.76 0.00 34.01 3.86
4669 9774 2.122989 GATCCGGCCCCTCCACTA 60.123 66.667 0.00 0.00 34.01 2.74
4670 9775 2.446036 ATCCGGCCCCTCCACTAC 60.446 66.667 0.00 0.00 34.01 2.73
4671 9776 3.326385 ATCCGGCCCCTCCACTACA 62.326 63.158 0.00 0.00 34.01 2.74
4672 9777 2.621672 ATCCGGCCCCTCCACTACAT 62.622 60.000 0.00 0.00 34.01 2.29
4673 9778 2.375345 CCGGCCCCTCCACTACATT 61.375 63.158 0.00 0.00 34.01 2.71
4674 9779 1.607612 CGGCCCCTCCACTACATTT 59.392 57.895 0.00 0.00 34.01 2.32
4675 9780 0.034477 CGGCCCCTCCACTACATTTT 60.034 55.000 0.00 0.00 34.01 1.82
4676 9781 1.763968 GGCCCCTCCACTACATTTTC 58.236 55.000 0.00 0.00 34.01 2.29
4677 9782 1.685180 GGCCCCTCCACTACATTTTCC 60.685 57.143 0.00 0.00 34.01 3.13
4678 9783 1.285078 GCCCCTCCACTACATTTTCCT 59.715 52.381 0.00 0.00 0.00 3.36
4679 9784 2.291605 GCCCCTCCACTACATTTTCCTT 60.292 50.000 0.00 0.00 0.00 3.36
4680 9785 3.817931 GCCCCTCCACTACATTTTCCTTT 60.818 47.826 0.00 0.00 0.00 3.11
4681 9786 3.763897 CCCCTCCACTACATTTTCCTTTG 59.236 47.826 0.00 0.00 0.00 2.77
4682 9787 3.763897 CCCTCCACTACATTTTCCTTTGG 59.236 47.826 0.00 0.00 0.00 3.28
4683 9788 3.193479 CCTCCACTACATTTTCCTTTGGC 59.807 47.826 0.00 0.00 0.00 4.52
4684 9789 4.082125 CTCCACTACATTTTCCTTTGGCT 58.918 43.478 0.00 0.00 0.00 4.75
4685 9790 4.079253 TCCACTACATTTTCCTTTGGCTC 58.921 43.478 0.00 0.00 0.00 4.70
4686 9791 3.826157 CCACTACATTTTCCTTTGGCTCA 59.174 43.478 0.00 0.00 0.00 4.26
4687 9792 4.082571 CCACTACATTTTCCTTTGGCTCAG 60.083 45.833 0.00 0.00 0.00 3.35
4688 9793 3.507622 ACTACATTTTCCTTTGGCTCAGC 59.492 43.478 0.00 0.00 0.00 4.26
4689 9794 2.318908 ACATTTTCCTTTGGCTCAGCA 58.681 42.857 0.00 0.00 0.00 4.41
4690 9795 2.699846 ACATTTTCCTTTGGCTCAGCAA 59.300 40.909 0.00 0.00 0.00 3.91
4691 9796 3.325716 ACATTTTCCTTTGGCTCAGCAAT 59.674 39.130 0.00 0.00 0.00 3.56
4692 9797 4.527816 ACATTTTCCTTTGGCTCAGCAATA 59.472 37.500 0.00 0.00 0.00 1.90
4693 9798 4.789012 TTTTCCTTTGGCTCAGCAATAG 57.211 40.909 0.00 0.00 0.00 1.73
4694 9799 2.425143 TCCTTTGGCTCAGCAATAGG 57.575 50.000 4.09 4.09 0.00 2.57
4695 9800 0.743097 CCTTTGGCTCAGCAATAGGC 59.257 55.000 0.00 0.00 45.30 3.93
4707 9812 3.542712 GCAATAGGCGATACCACAATG 57.457 47.619 0.00 0.00 43.14 2.82
4708 9813 2.878406 GCAATAGGCGATACCACAATGT 59.122 45.455 0.00 0.00 43.14 2.71
4709 9814 3.315191 GCAATAGGCGATACCACAATGTT 59.685 43.478 0.00 0.00 43.14 2.71
4710 9815 4.202010 GCAATAGGCGATACCACAATGTTT 60.202 41.667 0.00 0.00 43.14 2.83
4711 9816 5.273170 CAATAGGCGATACCACAATGTTTG 58.727 41.667 0.00 0.00 43.14 2.93
4712 9817 1.472480 AGGCGATACCACAATGTTTGC 59.528 47.619 0.00 0.00 43.14 3.68
4713 9818 1.472480 GGCGATACCACAATGTTTGCT 59.528 47.619 0.00 0.00 38.86 3.91
4714 9819 2.477863 GGCGATACCACAATGTTTGCTC 60.478 50.000 0.00 0.00 38.86 4.26
4715 9820 2.477863 GCGATACCACAATGTTTGCTCC 60.478 50.000 0.00 0.00 0.00 4.70
4734 9839 2.068821 AGCAGCGTGGGATCCTCAT 61.069 57.895 12.58 0.00 0.00 2.90
4766 9871 2.135139 CAACGACTCAGCTTGCTTACA 58.865 47.619 0.00 0.00 0.00 2.41
4770 9875 1.989165 GACTCAGCTTGCTTACAGTCG 59.011 52.381 9.15 0.00 0.00 4.18
4780 9885 1.608283 GCTTACAGTCGGCTTCCAACT 60.608 52.381 0.00 0.00 0.00 3.16
4805 9910 0.809241 GCTCTCCCAGCGTCATTCAG 60.809 60.000 0.00 0.00 38.76 3.02
4814 9919 3.438087 CCAGCGTCATTCAGATTTGTCTT 59.562 43.478 0.00 0.00 0.00 3.01
4817 9922 4.391216 AGCGTCATTCAGATTTGTCTTCAG 59.609 41.667 0.00 0.00 0.00 3.02
4825 9930 4.686091 TCAGATTTGTCTTCAGTAGCAACG 59.314 41.667 0.00 0.00 0.00 4.10
4866 9971 2.187946 GCTAGCGCCTGACACCAT 59.812 61.111 2.29 0.00 0.00 3.55
4872 9977 4.408821 GCCTGACACCATGGCCGA 62.409 66.667 13.04 0.00 40.71 5.54
4885 9990 1.295423 GGCCGACCAGCTTCAGTTA 59.705 57.895 0.00 0.00 35.26 2.24
4911 10016 6.936968 AAACACTAGGGGATAGGATCATAC 57.063 41.667 0.00 0.00 35.63 2.39
4933 10038 5.497474 ACGTTTAGGCAAATCAACTAGGAT 58.503 37.500 0.00 0.00 0.00 3.24
4937 10042 7.519008 CGTTTAGGCAAATCAACTAGGATGATC 60.519 40.741 12.15 2.89 36.53 2.92
4938 10043 5.378230 AGGCAAATCAACTAGGATGATCA 57.622 39.130 12.15 0.00 36.53 2.92
4965 14977 2.288025 ACGGGGCGTCTGTTGGTAT 61.288 57.895 0.00 0.00 33.69 2.73
4982 14994 2.041966 GTATATGTCGTCGCTCCAACG 58.958 52.381 0.00 0.00 41.39 4.10
4983 14995 0.454600 ATATGTCGTCGCTCCAACGT 59.545 50.000 0.00 0.00 40.86 3.99
5022 15034 1.221021 GTTCGGCCTAGGGTTCCAG 59.779 63.158 11.72 0.68 0.00 3.86
5023 15035 2.666098 TTCGGCCTAGGGTTCCAGC 61.666 63.158 11.72 0.00 0.00 4.85
5024 15036 3.083997 CGGCCTAGGGTTCCAGCT 61.084 66.667 11.72 0.00 0.00 4.24
5025 15037 1.760875 CGGCCTAGGGTTCCAGCTA 60.761 63.158 11.72 0.00 0.00 3.32
5026 15038 1.830836 GGCCTAGGGTTCCAGCTAC 59.169 63.158 11.72 0.00 0.00 3.58
5027 15039 0.691413 GGCCTAGGGTTCCAGCTACT 60.691 60.000 11.72 0.00 0.00 2.57
5028 15040 1.412649 GGCCTAGGGTTCCAGCTACTA 60.413 57.143 11.72 0.00 0.00 1.82
5029 15041 1.687660 GCCTAGGGTTCCAGCTACTAC 59.312 57.143 11.72 0.00 0.00 2.73
5032 15044 0.333993 AGGGTTCCAGCTACTACCGA 59.666 55.000 0.00 0.00 0.00 4.69
5072 15085 2.098770 ACCGAGAGTAGTCAATTACGGC 59.901 50.000 0.00 0.00 42.29 5.68
5073 15086 2.373269 CGAGAGTAGTCAATTACGGCG 58.627 52.381 4.80 4.80 0.00 6.46
5074 15087 2.117910 GAGAGTAGTCAATTACGGCGC 58.882 52.381 6.90 0.00 0.00 6.53
5075 15088 1.475280 AGAGTAGTCAATTACGGCGCA 59.525 47.619 10.83 0.00 0.00 6.09
5076 15089 1.587034 GAGTAGTCAATTACGGCGCAC 59.413 52.381 10.83 0.00 0.00 5.34
5082 15095 2.103647 AATTACGGCGCACGATGCA 61.104 52.632 22.10 0.00 45.36 3.96
5083 15096 2.035617 AATTACGGCGCACGATGCAG 62.036 55.000 22.10 4.33 45.36 4.41
5084 15097 3.925362 TTACGGCGCACGATGCAGT 62.925 57.895 22.10 9.26 45.36 4.40
5088 15101 2.202743 GCGCACGATGCAGTCCTA 60.203 61.111 0.30 0.00 45.36 2.94
5089 15102 2.517450 GCGCACGATGCAGTCCTAC 61.517 63.158 0.30 0.00 45.36 3.18
5090 15103 1.153842 CGCACGATGCAGTCCTACA 60.154 57.895 9.95 0.00 45.36 2.74
5091 15104 0.528466 CGCACGATGCAGTCCTACAT 60.528 55.000 9.95 0.00 45.36 2.29
5092 15105 1.212616 GCACGATGCAGTCCTACATC 58.787 55.000 0.00 0.00 44.26 3.06
5093 15106 1.202463 GCACGATGCAGTCCTACATCT 60.202 52.381 6.08 0.00 44.26 2.90
5094 15107 2.034685 GCACGATGCAGTCCTACATCTA 59.965 50.000 6.08 0.00 44.26 1.98
5095 15108 3.855154 GCACGATGCAGTCCTACATCTAG 60.855 52.174 6.08 0.00 44.26 2.43
5096 15109 2.887783 ACGATGCAGTCCTACATCTAGG 59.112 50.000 6.08 0.00 40.43 3.02
5097 15110 2.230025 CGATGCAGTCCTACATCTAGGG 59.770 54.545 6.08 0.00 40.31 3.53
5098 15111 2.848678 TGCAGTCCTACATCTAGGGT 57.151 50.000 0.00 0.00 40.31 4.34
5099 15112 2.667470 TGCAGTCCTACATCTAGGGTC 58.333 52.381 0.00 0.00 40.31 4.46
5100 15113 2.024369 TGCAGTCCTACATCTAGGGTCA 60.024 50.000 0.00 0.00 40.31 4.02
5101 15114 3.235200 GCAGTCCTACATCTAGGGTCAT 58.765 50.000 0.00 0.00 40.31 3.06
5102 15115 3.643792 GCAGTCCTACATCTAGGGTCATT 59.356 47.826 0.00 0.00 40.31 2.57
5103 15116 4.101741 GCAGTCCTACATCTAGGGTCATTT 59.898 45.833 0.00 0.00 40.31 2.32
5104 15117 5.396884 GCAGTCCTACATCTAGGGTCATTTT 60.397 44.000 0.00 0.00 40.31 1.82
5105 15118 6.653989 CAGTCCTACATCTAGGGTCATTTTT 58.346 40.000 0.00 0.00 40.31 1.94
5106 15119 6.540189 CAGTCCTACATCTAGGGTCATTTTTG 59.460 42.308 0.00 0.00 40.31 2.44
5107 15120 5.297029 GTCCTACATCTAGGGTCATTTTTGC 59.703 44.000 0.00 0.00 40.31 3.68
5108 15121 5.045213 TCCTACATCTAGGGTCATTTTTGCA 60.045 40.000 0.00 0.00 40.31 4.08
5109 15122 5.652014 CCTACATCTAGGGTCATTTTTGCAA 59.348 40.000 0.00 0.00 36.56 4.08
5110 15123 6.152661 CCTACATCTAGGGTCATTTTTGCAAA 59.847 38.462 8.05 8.05 36.56 3.68
5111 15124 6.029346 ACATCTAGGGTCATTTTTGCAAAG 57.971 37.500 12.41 1.05 0.00 2.77
5112 15125 5.774690 ACATCTAGGGTCATTTTTGCAAAGA 59.225 36.000 12.41 8.58 0.00 2.52
5113 15126 6.267471 ACATCTAGGGTCATTTTTGCAAAGAA 59.733 34.615 12.41 10.10 0.00 2.52
5114 15127 6.723298 TCTAGGGTCATTTTTGCAAAGAAA 57.277 33.333 12.41 5.34 0.00 2.52
5115 15128 7.301868 TCTAGGGTCATTTTTGCAAAGAAAT 57.698 32.000 12.41 7.59 0.00 2.17
5116 15129 7.734942 TCTAGGGTCATTTTTGCAAAGAAATT 58.265 30.769 12.41 0.00 0.00 1.82
5117 15130 6.866010 AGGGTCATTTTTGCAAAGAAATTC 57.134 33.333 12.41 6.11 0.00 2.17
5118 15131 6.594744 AGGGTCATTTTTGCAAAGAAATTCT 58.405 32.000 12.41 3.92 0.00 2.40
5119 15132 6.484308 AGGGTCATTTTTGCAAAGAAATTCTG 59.516 34.615 12.41 3.13 0.00 3.02
5120 15133 6.482973 GGGTCATTTTTGCAAAGAAATTCTGA 59.517 34.615 12.41 5.50 0.00 3.27
5121 15134 7.173735 GGGTCATTTTTGCAAAGAAATTCTGAT 59.826 33.333 12.41 0.00 0.00 2.90
5122 15135 8.562052 GGTCATTTTTGCAAAGAAATTCTGATT 58.438 29.630 12.41 0.00 0.00 2.57
5123 15136 9.377383 GTCATTTTTGCAAAGAAATTCTGATTG 57.623 29.630 12.41 0.00 0.00 2.67
5124 15137 8.071368 TCATTTTTGCAAAGAAATTCTGATTGC 58.929 29.630 19.83 19.83 39.45 3.56
5125 15138 6.922247 TTTTGCAAAGAAATTCTGATTGCA 57.078 29.167 23.45 23.45 44.05 4.08
5126 15139 7.499321 TTTTGCAAAGAAATTCTGATTGCAT 57.501 28.000 26.11 0.00 44.66 3.96
5127 15140 6.474819 TTGCAAAGAAATTCTGATTGCATG 57.525 33.333 26.11 7.90 44.66 4.06
5128 15141 4.932799 TGCAAAGAAATTCTGATTGCATGG 59.067 37.500 23.45 0.00 42.15 3.66
5129 15142 4.331717 GCAAAGAAATTCTGATTGCATGGG 59.668 41.667 21.05 0.00 39.06 4.00
5130 15143 3.814005 AGAAATTCTGATTGCATGGGC 57.186 42.857 0.00 0.00 41.68 5.36
5131 15144 3.371965 AGAAATTCTGATTGCATGGGCT 58.628 40.909 0.00 0.00 41.91 5.19
5132 15145 4.539726 AGAAATTCTGATTGCATGGGCTA 58.460 39.130 0.00 0.00 41.91 3.93
5133 15146 4.583489 AGAAATTCTGATTGCATGGGCTAG 59.417 41.667 0.00 0.00 41.91 3.42
5134 15147 3.870538 ATTCTGATTGCATGGGCTAGA 57.129 42.857 0.00 0.00 41.91 2.43
5135 15148 2.924757 TCTGATTGCATGGGCTAGAG 57.075 50.000 0.00 0.00 41.91 2.43
5136 15149 1.419012 TCTGATTGCATGGGCTAGAGG 59.581 52.381 0.00 0.00 41.91 3.69
5137 15150 0.179009 TGATTGCATGGGCTAGAGGC 60.179 55.000 0.00 0.00 41.91 4.70
5138 15151 1.228063 ATTGCATGGGCTAGAGGCG 60.228 57.895 0.00 0.00 42.94 5.52
5139 15152 1.699054 ATTGCATGGGCTAGAGGCGA 61.699 55.000 0.00 0.00 42.94 5.54
5140 15153 2.030262 GCATGGGCTAGAGGCGAG 59.970 66.667 0.00 0.00 42.94 5.03
5141 15154 2.030262 CATGGGCTAGAGGCGAGC 59.970 66.667 0.00 1.07 42.94 5.03
5142 15155 3.610669 ATGGGCTAGAGGCGAGCG 61.611 66.667 0.00 0.00 41.06 5.03
5144 15157 4.577246 GGGCTAGAGGCGAGCGTG 62.577 72.222 0.00 0.00 41.06 5.34
5145 15158 3.827898 GGCTAGAGGCGAGCGTGT 61.828 66.667 0.00 0.00 41.06 4.49
5146 15159 2.478890 GGCTAGAGGCGAGCGTGTA 61.479 63.158 0.00 0.00 41.06 2.90
5147 15160 1.009449 GCTAGAGGCGAGCGTGTAG 60.009 63.158 14.85 14.85 32.93 2.74
5148 15161 1.437772 GCTAGAGGCGAGCGTGTAGA 61.438 60.000 20.91 0.00 31.91 2.59
5149 15162 1.231221 CTAGAGGCGAGCGTGTAGAT 58.769 55.000 14.23 0.00 31.91 1.98
5150 15163 0.945099 TAGAGGCGAGCGTGTAGATG 59.055 55.000 0.00 0.00 0.00 2.90
5151 15164 1.032657 AGAGGCGAGCGTGTAGATGT 61.033 55.000 0.00 0.00 0.00 3.06
5152 15165 0.661552 GAGGCGAGCGTGTAGATGTA 59.338 55.000 0.00 0.00 0.00 2.29
5153 15166 1.065102 GAGGCGAGCGTGTAGATGTAA 59.935 52.381 0.00 0.00 0.00 2.41
5154 15167 1.475280 AGGCGAGCGTGTAGATGTAAA 59.525 47.619 0.00 0.00 0.00 2.01
5155 15168 2.100916 AGGCGAGCGTGTAGATGTAAAT 59.899 45.455 0.00 0.00 0.00 1.40
5156 15169 2.864343 GGCGAGCGTGTAGATGTAAATT 59.136 45.455 0.00 0.00 0.00 1.82
5157 15170 3.308866 GGCGAGCGTGTAGATGTAAATTT 59.691 43.478 0.00 0.00 0.00 1.82
5158 15171 4.263800 GCGAGCGTGTAGATGTAAATTTG 58.736 43.478 0.00 0.00 0.00 2.32
5159 15172 4.263800 CGAGCGTGTAGATGTAAATTTGC 58.736 43.478 0.00 0.00 0.00 3.68
5160 15173 4.032900 CGAGCGTGTAGATGTAAATTTGCT 59.967 41.667 7.80 0.23 0.00 3.91
5161 15174 5.221891 AGCGTGTAGATGTAAATTTGCTG 57.778 39.130 7.80 0.00 0.00 4.41
5162 15175 3.786048 GCGTGTAGATGTAAATTTGCTGC 59.214 43.478 7.80 0.00 0.00 5.25
5163 15176 4.671508 GCGTGTAGATGTAAATTTGCTGCA 60.672 41.667 7.80 0.00 0.00 4.41
5164 15177 5.389778 CGTGTAGATGTAAATTTGCTGCAA 58.610 37.500 11.69 11.69 0.00 4.08
5165 15178 5.855925 CGTGTAGATGTAAATTTGCTGCAAA 59.144 36.000 27.78 27.78 37.75 3.68
5166 15179 6.527722 CGTGTAGATGTAAATTTGCTGCAAAT 59.472 34.615 29.48 29.48 44.62 2.32
5179 15192 7.928307 TTTGCTGCAAATTAATCTAGAGACT 57.072 32.000 22.84 0.00 0.00 3.24
5180 15193 7.928307 TTGCTGCAAATTAATCTAGAGACTT 57.072 32.000 13.51 0.00 0.00 3.01
5181 15194 7.545362 TGCTGCAAATTAATCTAGAGACTTC 57.455 36.000 0.00 0.00 0.00 3.01
5182 15195 7.334090 TGCTGCAAATTAATCTAGAGACTTCT 58.666 34.615 0.00 0.00 37.46 2.85
5183 15196 7.826252 TGCTGCAAATTAATCTAGAGACTTCTT 59.174 33.333 0.00 0.00 34.79 2.52
5184 15197 8.334632 GCTGCAAATTAATCTAGAGACTTCTTC 58.665 37.037 0.00 0.00 34.79 2.87
5185 15198 9.598517 CTGCAAATTAATCTAGAGACTTCTTCT 57.401 33.333 0.00 0.00 37.23 2.85
5224 15237 1.893801 GGGGACTTCTTCTCACTCGAA 59.106 52.381 0.00 0.00 0.00 3.71
5231 15244 2.160205 TCTTCTCACTCGAACGTCCAT 58.840 47.619 0.00 0.00 0.00 3.41
5334 23846 2.924290 GAGTCGTGCTCCTAATTGTCAC 59.076 50.000 0.00 0.00 38.27 3.67
5336 23848 1.621317 TCGTGCTCCTAATTGTCACCA 59.379 47.619 0.00 0.00 0.00 4.17
5347 23859 1.836999 TTGTCACCATAGCTGCCGGT 61.837 55.000 1.90 0.00 0.00 5.28
5405 23918 7.986553 AATATATGCCTCTCCTAACAGCTAT 57.013 36.000 0.00 0.00 0.00 2.97
5452 23968 9.232473 TGGTGTATGCAACTTAATATGTTGTTA 57.768 29.630 16.82 9.46 44.54 2.41
5483 23999 8.590719 AAACCTTTTCGAAAGTTGTTGTTTTA 57.409 26.923 14.15 0.00 0.00 1.52
5537 24053 6.387041 TGTATGTGCTAGTATGTCCACTAC 57.613 41.667 0.00 0.00 0.00 2.73
5707 24223 6.613745 GCGACTTTAAATGCTACTGCTATACG 60.614 42.308 0.00 0.00 40.48 3.06
5738 24254 3.253188 TGAGATTGTTGTTGTTGCTAGCC 59.747 43.478 13.29 0.00 0.00 3.93
5885 30769 5.704053 TCGTTTTAGGGTGAGATTCTTTTCC 59.296 40.000 0.00 0.00 0.00 3.13
5984 30868 3.448686 CTGTCATCAAGTCCCGATGTAC 58.551 50.000 0.00 0.00 40.92 2.90
6095 30983 1.300697 GGACGTCGTGGCAAAGTCT 60.301 57.895 9.92 0.00 32.86 3.24
6142 31030 1.828832 GTAGATCGTTGTCTCGCCAG 58.171 55.000 0.00 0.00 0.00 4.85
6155 31043 2.362369 CGCCAGACCCATCTCCTGT 61.362 63.158 0.00 0.00 30.42 4.00
6192 31080 7.715686 GCATACTTGTAGGACCTAATTAAGCTT 59.284 37.037 3.48 3.48 0.00 3.74
6207 31095 2.918712 AGCTTAGCTCCATTGCGTAT 57.081 45.000 0.00 0.00 30.62 3.06
6336 31225 6.267070 TCCGTTTTCTGTTTTGATGTAAACC 58.733 36.000 0.00 0.00 37.24 3.27
6544 31436 3.945285 CTCTCTCGCTAGTTTTCTCCTCT 59.055 47.826 0.00 0.00 0.00 3.69
6545 31437 3.942748 TCTCTCGCTAGTTTTCTCCTCTC 59.057 47.826 0.00 0.00 0.00 3.20
6546 31438 3.687125 TCTCGCTAGTTTTCTCCTCTCA 58.313 45.455 0.00 0.00 0.00 3.27
6594 31486 0.173708 GAGCTTCGGGTGTTCGATCT 59.826 55.000 0.00 0.00 39.03 2.75
6625 31517 1.658686 GGTCGAGCGGTGTCTGATCT 61.659 60.000 0.00 0.00 0.00 2.75
6667 31559 0.687354 AGAAGAAGAAGAAGGCGGCA 59.313 50.000 13.08 0.00 0.00 5.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 2.809307 TTCCGGTTCCAGCCACGAA 61.809 57.895 0.00 0.00 0.00 3.85
7 8 3.235481 TTCCGGTTCCAGCCACGA 61.235 61.111 0.00 0.00 0.00 4.35
8 9 2.162338 TAGTTCCGGTTCCAGCCACG 62.162 60.000 0.00 0.00 0.00 4.94
9 10 0.035739 TTAGTTCCGGTTCCAGCCAC 59.964 55.000 0.00 0.00 0.00 5.01
10 11 0.766131 TTTAGTTCCGGTTCCAGCCA 59.234 50.000 0.00 0.00 0.00 4.75
11 12 1.450025 CTTTAGTTCCGGTTCCAGCC 58.550 55.000 0.00 0.00 0.00 4.85
12 13 0.803117 GCTTTAGTTCCGGTTCCAGC 59.197 55.000 0.00 0.00 0.00 4.85
13 14 2.347731 GAGCTTTAGTTCCGGTTCCAG 58.652 52.381 0.00 0.00 0.00 3.86
14 15 1.002773 GGAGCTTTAGTTCCGGTTCCA 59.997 52.381 0.00 0.00 35.74 3.53
15 16 1.678123 GGGAGCTTTAGTTCCGGTTCC 60.678 57.143 0.00 0.00 45.11 3.62
16 17 1.678123 GGGGAGCTTTAGTTCCGGTTC 60.678 57.143 0.00 0.00 45.11 3.62
17 18 0.327259 GGGGAGCTTTAGTTCCGGTT 59.673 55.000 0.00 0.00 45.11 4.44
18 19 1.559965 GGGGGAGCTTTAGTTCCGGT 61.560 60.000 0.00 0.00 45.11 5.28
19 20 1.223763 GGGGGAGCTTTAGTTCCGG 59.776 63.158 0.00 0.00 45.11 5.14
20 21 0.618981 AAGGGGGAGCTTTAGTTCCG 59.381 55.000 6.56 0.00 45.11 4.30
21 22 3.202373 ACATAAGGGGGAGCTTTAGTTCC 59.798 47.826 4.21 4.21 43.68 3.62
22 23 4.164413 AGACATAAGGGGGAGCTTTAGTTC 59.836 45.833 0.00 0.00 0.00 3.01
23 24 4.112331 AGACATAAGGGGGAGCTTTAGTT 58.888 43.478 0.00 0.00 0.00 2.24
24 25 3.712218 GAGACATAAGGGGGAGCTTTAGT 59.288 47.826 0.00 0.00 0.00 2.24
25 26 3.243907 CGAGACATAAGGGGGAGCTTTAG 60.244 52.174 0.00 0.00 0.00 1.85
26 27 2.698797 CGAGACATAAGGGGGAGCTTTA 59.301 50.000 0.00 0.00 0.00 1.85
27 28 1.486726 CGAGACATAAGGGGGAGCTTT 59.513 52.381 0.00 0.00 0.00 3.51
28 29 1.123928 CGAGACATAAGGGGGAGCTT 58.876 55.000 0.00 0.00 0.00 3.74
29 30 0.760945 CCGAGACATAAGGGGGAGCT 60.761 60.000 0.00 0.00 0.00 4.09
30 31 1.049289 ACCGAGACATAAGGGGGAGC 61.049 60.000 0.00 0.00 0.00 4.70
31 32 1.413077 GAACCGAGACATAAGGGGGAG 59.587 57.143 0.00 0.00 0.00 4.30
32 33 1.492764 GAACCGAGACATAAGGGGGA 58.507 55.000 0.00 0.00 0.00 4.81
33 34 0.104304 CGAACCGAGACATAAGGGGG 59.896 60.000 0.00 0.00 0.00 5.40
34 35 1.108776 TCGAACCGAGACATAAGGGG 58.891 55.000 0.00 0.00 0.00 4.79
52 53 2.999739 TTTGTCCCGGTTCGTGGCTC 63.000 60.000 0.00 0.00 0.00 4.70
53 54 2.406002 ATTTGTCCCGGTTCGTGGCT 62.406 55.000 0.00 0.00 0.00 4.75
54 55 1.969589 ATTTGTCCCGGTTCGTGGC 60.970 57.895 0.00 0.00 0.00 5.01
55 56 0.887387 ACATTTGTCCCGGTTCGTGG 60.887 55.000 0.00 0.00 0.00 4.94
56 57 1.798283 TACATTTGTCCCGGTTCGTG 58.202 50.000 0.00 0.00 0.00 4.35
57 58 2.289819 ACATACATTTGTCCCGGTTCGT 60.290 45.455 0.00 0.00 0.00 3.85
58 59 2.095213 CACATACATTTGTCCCGGTTCG 59.905 50.000 0.00 0.00 0.00 3.95
59 60 2.422127 CCACATACATTTGTCCCGGTTC 59.578 50.000 0.00 0.00 0.00 3.62
60 61 2.442413 CCACATACATTTGTCCCGGTT 58.558 47.619 0.00 0.00 0.00 4.44
61 62 1.340600 CCCACATACATTTGTCCCGGT 60.341 52.381 0.00 0.00 0.00 5.28
62 63 1.388547 CCCACATACATTTGTCCCGG 58.611 55.000 0.00 0.00 0.00 5.73
63 64 0.738389 GCCCACATACATTTGTCCCG 59.262 55.000 0.00 0.00 0.00 5.14
64 65 1.111277 GGCCCACATACATTTGTCCC 58.889 55.000 0.00 0.00 0.00 4.46
65 66 1.750778 CTGGCCCACATACATTTGTCC 59.249 52.381 0.00 0.00 0.00 4.02
66 67 1.750778 CCTGGCCCACATACATTTGTC 59.249 52.381 0.00 0.00 0.00 3.18
67 68 1.357420 TCCTGGCCCACATACATTTGT 59.643 47.619 0.00 0.00 0.00 2.83
68 69 2.026641 CTCCTGGCCCACATACATTTG 58.973 52.381 0.00 0.00 0.00 2.32
69 70 1.686115 GCTCCTGGCCCACATACATTT 60.686 52.381 0.00 0.00 34.27 2.32
70 71 0.106519 GCTCCTGGCCCACATACATT 60.107 55.000 0.00 0.00 34.27 2.71
71 72 1.533711 GCTCCTGGCCCACATACAT 59.466 57.895 0.00 0.00 34.27 2.29
72 73 2.998097 GCTCCTGGCCCACATACA 59.002 61.111 0.00 0.00 34.27 2.29
73 74 2.203070 CGCTCCTGGCCCACATAC 60.203 66.667 0.00 0.00 37.74 2.39
74 75 2.364973 TCGCTCCTGGCCCACATA 60.365 61.111 0.00 0.00 37.74 2.29
75 76 3.790437 CTCGCTCCTGGCCCACAT 61.790 66.667 0.00 0.00 37.74 3.21
82 83 3.801997 AATGGGCCTCGCTCCTGG 61.802 66.667 4.53 0.00 0.00 4.45
83 84 2.515523 CAATGGGCCTCGCTCCTG 60.516 66.667 4.53 0.00 0.00 3.86
84 85 3.801997 CCAATGGGCCTCGCTCCT 61.802 66.667 4.53 0.00 0.00 3.69
85 86 4.115199 ACCAATGGGCCTCGCTCC 62.115 66.667 4.53 0.00 37.90 4.70
86 87 2.514824 GACCAATGGGCCTCGCTC 60.515 66.667 4.53 0.00 37.90 5.03
93 94 2.754254 GAACCGGGACCAATGGGC 60.754 66.667 6.32 0.00 37.90 5.36
94 95 2.437716 CGAACCGGGACCAATGGG 60.438 66.667 6.32 0.00 41.29 4.00
95 96 2.038269 CACGAACCGGGACCAATGG 61.038 63.158 6.32 0.00 28.17 3.16
96 97 2.686816 GCACGAACCGGGACCAATG 61.687 63.158 6.32 0.00 28.17 2.82
97 98 1.546589 TAGCACGAACCGGGACCAAT 61.547 55.000 6.32 0.00 28.17 3.16
98 99 2.162338 CTAGCACGAACCGGGACCAA 62.162 60.000 6.32 0.00 28.17 3.67
99 100 2.601067 TAGCACGAACCGGGACCA 60.601 61.111 6.32 0.00 28.17 4.02
100 101 2.183555 CTAGCACGAACCGGGACC 59.816 66.667 6.32 0.00 28.17 4.46
101 102 1.880819 TTCCTAGCACGAACCGGGAC 61.881 60.000 6.32 0.00 28.17 4.46
102 103 1.607178 TTCCTAGCACGAACCGGGA 60.607 57.895 6.32 0.00 28.17 5.14
103 104 1.447314 GTTCCTAGCACGAACCGGG 60.447 63.158 6.32 0.00 34.75 5.73
104 105 4.180496 GTTCCTAGCACGAACCGG 57.820 61.111 0.00 0.00 34.75 5.28
107 108 1.447314 CCCGGTTCCTAGCACGAAC 60.447 63.158 0.00 2.67 39.12 3.95
108 109 1.607178 TCCCGGTTCCTAGCACGAA 60.607 57.895 0.00 0.00 0.00 3.85
109 110 2.036098 TCCCGGTTCCTAGCACGA 59.964 61.111 0.00 0.00 0.00 4.35
110 111 2.162338 TTGTCCCGGTTCCTAGCACG 62.162 60.000 0.00 0.00 0.00 5.34
111 112 0.035739 TTTGTCCCGGTTCCTAGCAC 59.964 55.000 0.00 0.00 0.00 4.40
112 113 0.988832 ATTTGTCCCGGTTCCTAGCA 59.011 50.000 0.00 0.00 0.00 3.49
113 114 1.379527 CATTTGTCCCGGTTCCTAGC 58.620 55.000 0.00 0.00 0.00 3.42
114 115 1.408266 CCCATTTGTCCCGGTTCCTAG 60.408 57.143 0.00 0.00 0.00 3.02
115 116 0.621609 CCCATTTGTCCCGGTTCCTA 59.378 55.000 0.00 0.00 0.00 2.94
116 117 1.382629 CCCATTTGTCCCGGTTCCT 59.617 57.895 0.00 0.00 0.00 3.36
117 118 0.963856 GACCCATTTGTCCCGGTTCC 60.964 60.000 0.00 0.00 0.00 3.62
118 119 2.563297 GACCCATTTGTCCCGGTTC 58.437 57.895 0.00 0.00 0.00 3.62
119 120 4.834911 GACCCATTTGTCCCGGTT 57.165 55.556 0.00 0.00 0.00 4.44
125 126 2.076863 CTTCGTCTGGACCCATTTGTC 58.923 52.381 0.00 0.00 34.42 3.18
126 127 1.882352 GCTTCGTCTGGACCCATTTGT 60.882 52.381 0.00 0.00 0.00 2.83
127 128 0.804989 GCTTCGTCTGGACCCATTTG 59.195 55.000 0.00 0.00 0.00 2.32
128 129 0.400213 TGCTTCGTCTGGACCCATTT 59.600 50.000 0.00 0.00 0.00 2.32
129 130 0.036010 CTGCTTCGTCTGGACCCATT 60.036 55.000 0.00 0.00 0.00 3.16
130 131 1.599047 CTGCTTCGTCTGGACCCAT 59.401 57.895 0.00 0.00 0.00 4.00
131 132 2.583441 CCTGCTTCGTCTGGACCCA 61.583 63.158 0.00 0.00 0.00 4.51
132 133 2.266055 CCTGCTTCGTCTGGACCC 59.734 66.667 0.00 0.00 0.00 4.46
133 134 1.079750 GTCCTGCTTCGTCTGGACC 60.080 63.158 14.86 0.00 44.46 4.46
134 135 4.580835 GTCCTGCTTCGTCTGGAC 57.419 61.111 12.29 12.29 44.15 4.02
135 136 1.118965 TTGGTCCTGCTTCGTCTGGA 61.119 55.000 0.00 0.00 0.00 3.86
136 137 0.036010 ATTGGTCCTGCTTCGTCTGG 60.036 55.000 0.00 0.00 0.00 3.86
137 138 1.081892 CATTGGTCCTGCTTCGTCTG 58.918 55.000 0.00 0.00 0.00 3.51
138 139 0.674895 GCATTGGTCCTGCTTCGTCT 60.675 55.000 0.00 0.00 36.68 4.18
139 140 1.648467 GGCATTGGTCCTGCTTCGTC 61.648 60.000 3.33 0.00 39.60 4.20
140 141 1.675641 GGCATTGGTCCTGCTTCGT 60.676 57.895 3.33 0.00 39.60 3.85
141 142 2.409870 GGGCATTGGTCCTGCTTCG 61.410 63.158 3.33 0.00 39.60 3.79
142 143 1.304381 TGGGCATTGGTCCTGCTTC 60.304 57.895 3.33 0.00 40.42 3.86
143 144 1.607467 GTGGGCATTGGTCCTGCTT 60.607 57.895 3.33 0.00 40.42 3.91
144 145 2.036256 GTGGGCATTGGTCCTGCT 59.964 61.111 3.33 0.00 40.42 4.24
145 146 3.070576 GGTGGGCATTGGTCCTGC 61.071 66.667 0.00 0.00 40.42 4.85
146 147 1.679977 CTGGTGGGCATTGGTCCTG 60.680 63.158 0.00 0.00 40.42 3.86
147 148 2.765969 CTGGTGGGCATTGGTCCT 59.234 61.111 0.00 0.00 40.42 3.85
148 149 2.362889 CCTGGTGGGCATTGGTCC 60.363 66.667 0.00 0.00 40.08 4.46
182 183 4.452733 CTCCCGGTTCGTGAGCCC 62.453 72.222 0.00 0.00 0.00 5.19
183 184 4.452733 CCTCCCGGTTCGTGAGCC 62.453 72.222 0.00 0.00 30.54 4.70
184 185 1.673808 ATACCTCCCGGTTCGTGAGC 61.674 60.000 0.00 0.00 42.13 4.26
185 186 0.102481 CATACCTCCCGGTTCGTGAG 59.898 60.000 0.00 0.00 42.13 3.51
186 187 1.952102 GCATACCTCCCGGTTCGTGA 61.952 60.000 0.00 0.00 42.13 4.35
187 188 1.520787 GCATACCTCCCGGTTCGTG 60.521 63.158 0.00 0.00 42.13 4.35
188 189 2.728435 GGCATACCTCCCGGTTCGT 61.728 63.158 0.00 0.00 42.13 3.85
189 190 2.108362 GGCATACCTCCCGGTTCG 59.892 66.667 0.00 0.00 42.13 3.95
190 191 2.509422 GGGCATACCTCCCGGTTC 59.491 66.667 0.00 0.00 42.13 3.62
191 192 3.094498 GGGGCATACCTCCCGGTT 61.094 66.667 0.00 0.00 42.13 4.44
207 208 4.483243 CGAACCGGGACCCATGGG 62.483 72.222 30.23 30.23 42.03 4.00
208 209 3.712907 ACGAACCGGGACCCATGG 61.713 66.667 12.15 4.14 0.00 3.66
209 210 2.435938 CACGAACCGGGACCCATG 60.436 66.667 12.15 3.12 28.17 3.66
210 211 2.605295 TCACGAACCGGGACCCAT 60.605 61.111 12.15 0.00 32.99 4.00
215 216 2.203523 TCCAGTCACGAACCGGGA 60.204 61.111 6.32 0.00 36.75 5.14
216 217 2.048503 GTCCAGTCACGAACCGGG 60.049 66.667 6.32 0.00 0.00 5.73
217 218 2.048503 GGTCCAGTCACGAACCGG 60.049 66.667 0.00 0.00 0.00 5.28
219 220 2.048503 CCGGTCCAGTCACGAACC 60.049 66.667 0.00 0.00 0.00 3.62
220 221 2.048503 CCCGGTCCAGTCACGAAC 60.049 66.667 0.00 0.00 0.00 3.95
221 222 2.203523 TCCCGGTCCAGTCACGAA 60.204 61.111 0.00 0.00 0.00 3.85
222 223 2.128290 TAGTCCCGGTCCAGTCACGA 62.128 60.000 0.00 0.00 0.00 4.35
223 224 1.246056 TTAGTCCCGGTCCAGTCACG 61.246 60.000 0.00 0.00 0.00 4.35
224 225 1.134788 CATTAGTCCCGGTCCAGTCAC 60.135 57.143 0.00 0.00 0.00 3.67
225 226 1.191535 CATTAGTCCCGGTCCAGTCA 58.808 55.000 0.00 0.00 0.00 3.41
226 227 0.464452 CCATTAGTCCCGGTCCAGTC 59.536 60.000 0.00 0.00 0.00 3.51
227 228 0.042131 TCCATTAGTCCCGGTCCAGT 59.958 55.000 0.00 0.00 0.00 4.00
228 229 0.464452 GTCCATTAGTCCCGGTCCAG 59.536 60.000 0.00 0.00 0.00 3.86
229 230 0.042131 AGTCCATTAGTCCCGGTCCA 59.958 55.000 0.00 0.00 0.00 4.02
230 231 0.464452 CAGTCCATTAGTCCCGGTCC 59.536 60.000 0.00 0.00 0.00 4.46
231 232 1.136500 GTCAGTCCATTAGTCCCGGTC 59.864 57.143 0.00 0.00 0.00 4.79
232 233 1.192428 GTCAGTCCATTAGTCCCGGT 58.808 55.000 0.00 0.00 0.00 5.28
233 234 0.464452 GGTCAGTCCATTAGTCCCGG 59.536 60.000 0.00 0.00 35.97 5.73
234 235 1.137086 CTGGTCAGTCCATTAGTCCCG 59.863 57.143 0.00 0.00 46.12 5.14
235 236 2.168728 GTCTGGTCAGTCCATTAGTCCC 59.831 54.545 0.00 0.00 46.12 4.46
236 237 2.168728 GGTCTGGTCAGTCCATTAGTCC 59.831 54.545 8.90 0.00 46.12 3.85
237 238 2.168728 GGGTCTGGTCAGTCCATTAGTC 59.831 54.545 14.28 0.00 46.12 2.59
238 239 2.188817 GGGTCTGGTCAGTCCATTAGT 58.811 52.381 14.28 0.00 46.12 2.24
239 240 1.486726 GGGGTCTGGTCAGTCCATTAG 59.513 57.143 14.28 0.00 46.12 1.73
240 241 1.203376 TGGGGTCTGGTCAGTCCATTA 60.203 52.381 14.28 0.31 46.12 1.90
241 242 0.475632 TGGGGTCTGGTCAGTCCATT 60.476 55.000 14.28 0.00 46.12 3.16
242 243 0.475632 TTGGGGTCTGGTCAGTCCAT 60.476 55.000 14.28 0.00 46.12 3.41
243 244 1.074090 TTGGGGTCTGGTCAGTCCA 60.074 57.895 14.28 10.09 45.01 4.02
244 245 1.375326 GTTGGGGTCTGGTCAGTCC 59.625 63.158 5.83 5.83 36.17 3.85
245 246 1.375326 GGTTGGGGTCTGGTCAGTC 59.625 63.158 0.00 0.00 0.00 3.51
246 247 0.991355 TTGGTTGGGGTCTGGTCAGT 60.991 55.000 0.00 0.00 0.00 3.41
247 248 0.184933 TTTGGTTGGGGTCTGGTCAG 59.815 55.000 0.00 0.00 0.00 3.51
248 249 0.184933 CTTTGGTTGGGGTCTGGTCA 59.815 55.000 0.00 0.00 0.00 4.02
249 250 1.179174 GCTTTGGTTGGGGTCTGGTC 61.179 60.000 0.00 0.00 0.00 4.02
250 251 1.152546 GCTTTGGTTGGGGTCTGGT 60.153 57.895 0.00 0.00 0.00 4.00
251 252 1.908299 GGCTTTGGTTGGGGTCTGG 60.908 63.158 0.00 0.00 0.00 3.86
252 253 1.908299 GGGCTTTGGTTGGGGTCTG 60.908 63.158 0.00 0.00 0.00 3.51
253 254 2.091283 AGGGCTTTGGTTGGGGTCT 61.091 57.895 0.00 0.00 0.00 3.85
254 255 1.908299 CAGGGCTTTGGTTGGGGTC 60.908 63.158 0.00 0.00 0.00 4.46
255 256 2.201210 CAGGGCTTTGGTTGGGGT 59.799 61.111 0.00 0.00 0.00 4.95
256 257 1.053835 AAACAGGGCTTTGGTTGGGG 61.054 55.000 0.00 0.00 0.00 4.96
257 258 0.836606 AAAACAGGGCTTTGGTTGGG 59.163 50.000 0.00 0.00 0.00 4.12
258 259 2.708216 AAAAACAGGGCTTTGGTTGG 57.292 45.000 0.00 0.00 0.00 3.77
314 315 4.782019 GTTGTATGGATCTTTGCAACCA 57.218 40.909 8.78 8.78 36.83 3.67
436 440 6.754675 TCGTTTCTACTGCATGAATATCGAAA 59.245 34.615 0.00 0.00 0.00 3.46
483 487 5.885912 CCAAGTTGCATTGGTACTAACCTAT 59.114 40.000 10.43 0.00 46.91 2.57
552 560 2.771943 GTCCTCCATTGGATGTGGACTA 59.228 50.000 25.04 1.71 43.00 2.59
675 683 2.168728 GAGAGCCCTAGTGTTTTCCGAT 59.831 50.000 0.00 0.00 0.00 4.18
696 704 5.512942 AAAAATTTACCCCCATTCCAAGG 57.487 39.130 0.00 0.00 0.00 3.61
769 777 3.751175 TCCTGTAGTTTTCATTTCAGGCG 59.249 43.478 0.00 0.00 41.24 5.52
799 807 1.125633 TCTGGCCGGTTTAGGATACC 58.874 55.000 12.43 0.00 37.17 2.73
822 830 1.083489 TTGGATTAGCGTTTCGGCTG 58.917 50.000 0.00 0.00 44.50 4.85
899 907 7.892609 AGTCCCGCAATATATAATATCGCATA 58.107 34.615 0.00 0.00 0.00 3.14
918 929 0.101399 CGATGGAGTGAGAAGTCCCG 59.899 60.000 0.00 0.00 31.04 5.14
919 930 1.135333 GACGATGGAGTGAGAAGTCCC 59.865 57.143 0.00 0.00 31.04 4.46
960 971 6.804783 GGAAGTTTTCGAACAGTGAAGAAAAA 59.195 34.615 18.75 9.14 42.04 1.94
970 981 4.893424 TTTCTGGGAAGTTTTCGAACAG 57.107 40.909 0.00 0.00 0.00 3.16
976 987 5.483811 TGGTTGTTTTTCTGGGAAGTTTTC 58.516 37.500 0.00 0.00 0.00 2.29
1038 1054 1.934589 CGGCCACGATGACAATTAGA 58.065 50.000 2.24 0.00 44.60 2.10
1132 1205 9.769093 GGTTGCCATATACATATTTCGTTAATC 57.231 33.333 0.00 0.00 0.00 1.75
1133 1206 8.447833 CGGTTGCCATATACATATTTCGTTAAT 58.552 33.333 0.00 0.00 0.00 1.40
1134 1207 7.441760 ACGGTTGCCATATACATATTTCGTTAA 59.558 33.333 0.00 0.00 0.00 2.01
1205 1278 4.765339 GGAAAAGGAAGAAAATCGGGAGAA 59.235 41.667 0.00 0.00 45.37 2.87
1217 1290 0.601841 GGTCGTGCGGAAAAGGAAGA 60.602 55.000 0.00 0.00 0.00 2.87
1218 1291 0.602905 AGGTCGTGCGGAAAAGGAAG 60.603 55.000 0.00 0.00 0.00 3.46
1219 1292 0.601841 GAGGTCGTGCGGAAAAGGAA 60.602 55.000 0.00 0.00 0.00 3.36
1220 1293 1.005394 GAGGTCGTGCGGAAAAGGA 60.005 57.895 0.00 0.00 0.00 3.36
1221 1294 2.033194 GGAGGTCGTGCGGAAAAGG 61.033 63.158 0.00 0.00 0.00 3.11
1222 1295 2.033194 GGGAGGTCGTGCGGAAAAG 61.033 63.158 0.00 0.00 0.00 2.27
1223 1296 2.031465 GGGAGGTCGTGCGGAAAA 59.969 61.111 0.00 0.00 0.00 2.29
1224 1297 4.367023 CGGGAGGTCGTGCGGAAA 62.367 66.667 0.00 0.00 0.00 3.13
1227 1300 3.659089 AAATCGGGAGGTCGTGCGG 62.659 63.158 0.00 0.00 0.00 5.69
1228 1301 2.125673 AAATCGGGAGGTCGTGCG 60.126 61.111 0.00 0.00 0.00 5.34
1229 1302 0.391263 AAGAAATCGGGAGGTCGTGC 60.391 55.000 0.00 0.00 0.00 5.34
1230 1303 2.000447 GAAAGAAATCGGGAGGTCGTG 59.000 52.381 0.00 0.00 0.00 4.35
1231 1304 1.066358 GGAAAGAAATCGGGAGGTCGT 60.066 52.381 0.00 0.00 0.00 4.34
1232 1305 1.207329 AGGAAAGAAATCGGGAGGTCG 59.793 52.381 0.00 0.00 0.00 4.79
1233 1306 3.351794 AAGGAAAGAAATCGGGAGGTC 57.648 47.619 0.00 0.00 0.00 3.85
1234 1307 3.561528 GGAAAGGAAAGAAATCGGGAGGT 60.562 47.826 0.00 0.00 0.00 3.85
1235 1308 3.017442 GGAAAGGAAAGAAATCGGGAGG 58.983 50.000 0.00 0.00 0.00 4.30
1247 1320 1.346722 GAGGACGTGAGGGAAAGGAAA 59.653 52.381 0.00 0.00 0.00 3.13
1269 1342 3.081804 GCAGGAAAGGAAAGAAATCGGA 58.918 45.455 0.00 0.00 0.00 4.55
1270 1343 2.819608 TGCAGGAAAGGAAAGAAATCGG 59.180 45.455 0.00 0.00 0.00 4.18
1271 1344 3.667960 CGTGCAGGAAAGGAAAGAAATCG 60.668 47.826 0.00 0.00 0.00 3.34
1288 1361 1.541310 AAATCGGAGGAGGACGTGCA 61.541 55.000 10.52 0.00 0.00 4.57
1402 1495 2.905415 AATCAAGAAGGCATGTGGGA 57.095 45.000 0.00 0.00 0.00 4.37
1584 1678 6.265196 TCAAAGTTACCATGATGCTTGAAACT 59.735 34.615 0.00 0.00 0.00 2.66
1711 1807 9.907229 TTTGTTTTTCCCAATGGTTAAAGTTAT 57.093 25.926 0.00 0.00 0.00 1.89
1776 1872 3.614176 CAGATGTGCGCTGCGTATATTAT 59.386 43.478 24.04 12.38 0.00 1.28
1861 1966 6.270815 GTGCTATTTACACAGAAGATACCGA 58.729 40.000 0.00 0.00 37.96 4.69
2388 2499 4.339814 TGTGTTTCGGTAGCTTTTTCCATT 59.660 37.500 0.00 0.00 0.00 3.16
2544 2657 6.370718 AGGTCTTCAATGTGTAAAATACCGTC 59.629 38.462 0.00 0.00 0.00 4.79
2580 2694 7.633193 TCAAAGTTACCACTGTGTTTTGTAT 57.367 32.000 7.08 0.00 39.15 2.29
2607 2721 5.228945 ACTATGCTTCAACAACTACACCT 57.771 39.130 0.00 0.00 0.00 4.00
2708 2822 5.474532 CACATGATTTCTCCTCAGGACAAAA 59.525 40.000 0.00 0.00 0.00 2.44
2736 2850 2.038387 AACTGCCACTTCTTCACGTT 57.962 45.000 0.00 0.00 0.00 3.99
3026 3155 6.017109 CCTTAAGTGTGTGTGCAAAGAGTATT 60.017 38.462 0.97 0.00 0.00 1.89
3046 3229 5.116180 CGGTCTGTGATAATTGCTCCTTAA 58.884 41.667 0.00 0.00 0.00 1.85
3134 3320 0.512518 TTGAAGTCATCACAAGCGCG 59.487 50.000 0.00 0.00 37.92 6.86
3163 3350 6.485830 ACAATCTAGGAGCAGTAGCAATAA 57.514 37.500 0.00 0.00 45.49 1.40
3381 5141 3.652869 CCCCCTAATTGAGAATGGCTAGA 59.347 47.826 0.00 0.00 0.00 2.43
3526 5291 5.165676 CAACACACGTAAGCTAATACTGGA 58.834 41.667 0.00 0.00 45.62 3.86
3621 5386 2.292845 TGTGTGTGTGGTGTATGCATTG 59.707 45.455 3.54 0.00 0.00 2.82
3622 5387 2.293122 GTGTGTGTGTGGTGTATGCATT 59.707 45.455 3.54 0.00 0.00 3.56
3624 5389 1.304254 GTGTGTGTGTGGTGTATGCA 58.696 50.000 0.00 0.00 0.00 3.96
3625 5390 1.002900 GTGTGTGTGTGTGGTGTATGC 60.003 52.381 0.00 0.00 0.00 3.14
3628 5393 1.002087 TGTGTGTGTGTGTGTGGTGTA 59.998 47.619 0.00 0.00 0.00 2.90
3632 5397 0.167908 GTGTGTGTGTGTGTGTGTGG 59.832 55.000 0.00 0.00 0.00 4.17
3712 7757 2.285756 TCGTCAAAAATCCACGTGACAC 59.714 45.455 19.30 0.00 40.32 3.67
3844 8104 4.980339 TTGATGCCTCAAGCCATATAGA 57.020 40.909 0.00 0.00 42.71 1.98
4156 8423 2.525105 ACCTCCAACAACTTGGTGTT 57.475 45.000 6.08 0.00 46.56 3.32
4172 8472 4.532126 TGTTTCTCACATCACCATCTACCT 59.468 41.667 0.00 0.00 0.00 3.08
4283 9388 8.143193 TGATCATATGTTGTTCCCAATAAATGC 58.857 33.333 1.90 0.00 32.11 3.56
4331 9436 1.135972 GTATTGCCGATTAGCGCATGG 60.136 52.381 11.47 4.45 39.11 3.66
4357 9462 3.335579 GGCCGGCTAGAAAGGTTATATG 58.664 50.000 28.56 0.00 0.00 1.78
4413 9518 6.235664 GGTTAAGACCCAACAGTGAATCTTA 58.764 40.000 0.00 0.23 40.25 2.10
4429 9534 2.866762 GTGATGATGCGAGGGTTAAGAC 59.133 50.000 0.00 0.00 0.00 3.01
4436 9541 3.788333 AAAATTGTGATGATGCGAGGG 57.212 42.857 0.00 0.00 0.00 4.30
4442 9547 9.256477 CATAAGGATCCAAAAATTGTGATGATG 57.744 33.333 15.82 0.00 0.00 3.07
4446 9551 7.620888 AGGTCATAAGGATCCAAAAATTGTGAT 59.379 33.333 15.82 0.00 0.00 3.06
4448 9553 7.174107 AGGTCATAAGGATCCAAAAATTGTG 57.826 36.000 15.82 7.74 0.00 3.33
4517 9622 0.616395 TCACCGTGGGCTCTTGGATA 60.616 55.000 1.39 0.00 0.00 2.59
4532 9637 1.156736 CCCGACAGTGAAACATCACC 58.843 55.000 0.00 0.00 41.43 4.02
4537 9642 0.105964 CTCCACCCGACAGTGAAACA 59.894 55.000 0.00 0.00 41.43 2.83
4544 9649 0.319900 CTTGTGTCTCCACCCGACAG 60.320 60.000 0.00 0.00 41.62 3.51
4578 9683 2.673523 CCTGGGCTCTGTCAAGGG 59.326 66.667 0.00 0.00 0.00 3.95
4587 9692 3.785859 TCATCGGTGCCTGGGCTC 61.786 66.667 13.05 9.03 42.51 4.70
4605 9710 1.149174 AGTGAAGGCACCACACAGG 59.851 57.895 15.62 0.00 46.32 4.00
4607 9712 1.823470 GCAGTGAAGGCACCACACA 60.823 57.895 15.62 0.00 46.32 3.72
4624 9729 7.399245 TTGTACAAGGAAAATTGGTATAGGC 57.601 36.000 3.59 0.00 34.36 3.93
4646 9751 1.453928 GAGGGGCCGGATCCTTTTG 60.454 63.158 5.05 0.00 32.74 2.44
4662 9767 4.082125 AGCCAAAGGAAAATGTAGTGGAG 58.918 43.478 0.00 0.00 0.00 3.86
4663 9768 4.079253 GAGCCAAAGGAAAATGTAGTGGA 58.921 43.478 0.00 0.00 0.00 4.02
4664 9769 3.826157 TGAGCCAAAGGAAAATGTAGTGG 59.174 43.478 0.00 0.00 0.00 4.00
4665 9770 4.616835 GCTGAGCCAAAGGAAAATGTAGTG 60.617 45.833 0.00 0.00 0.00 2.74
4666 9771 3.507622 GCTGAGCCAAAGGAAAATGTAGT 59.492 43.478 0.00 0.00 0.00 2.73
4667 9772 3.507233 TGCTGAGCCAAAGGAAAATGTAG 59.493 43.478 0.23 0.00 0.00 2.74
4668 9773 3.495331 TGCTGAGCCAAAGGAAAATGTA 58.505 40.909 0.23 0.00 0.00 2.29
4669 9774 2.318908 TGCTGAGCCAAAGGAAAATGT 58.681 42.857 0.23 0.00 0.00 2.71
4670 9775 3.389925 TTGCTGAGCCAAAGGAAAATG 57.610 42.857 0.23 0.00 0.00 2.32
4671 9776 4.161001 CCTATTGCTGAGCCAAAGGAAAAT 59.839 41.667 0.23 0.00 30.92 1.82
4672 9777 3.511146 CCTATTGCTGAGCCAAAGGAAAA 59.489 43.478 0.23 0.00 30.92 2.29
4673 9778 3.091545 CCTATTGCTGAGCCAAAGGAAA 58.908 45.455 0.23 0.00 30.92 3.13
4674 9779 2.726821 CCTATTGCTGAGCCAAAGGAA 58.273 47.619 0.23 0.00 30.92 3.36
4675 9780 1.683011 GCCTATTGCTGAGCCAAAGGA 60.683 52.381 17.08 0.00 36.87 3.36
4676 9781 0.743097 GCCTATTGCTGAGCCAAAGG 59.257 55.000 0.23 6.84 36.87 3.11
4677 9782 0.379669 CGCCTATTGCTGAGCCAAAG 59.620 55.000 0.23 0.00 38.05 2.77
4678 9783 0.035534 TCGCCTATTGCTGAGCCAAA 60.036 50.000 0.23 0.00 38.05 3.28
4679 9784 0.181114 ATCGCCTATTGCTGAGCCAA 59.819 50.000 0.23 0.00 38.05 4.52
4680 9785 1.047801 TATCGCCTATTGCTGAGCCA 58.952 50.000 0.23 0.00 38.05 4.75
4681 9786 1.433534 GTATCGCCTATTGCTGAGCC 58.566 55.000 0.23 0.00 38.05 4.70
4682 9787 1.270305 TGGTATCGCCTATTGCTGAGC 60.270 52.381 0.00 0.00 38.05 4.26
4683 9788 2.224042 TGTGGTATCGCCTATTGCTGAG 60.224 50.000 0.00 0.00 38.05 3.35
4684 9789 1.760029 TGTGGTATCGCCTATTGCTGA 59.240 47.619 0.00 0.00 38.05 4.26
4685 9790 2.238942 TGTGGTATCGCCTATTGCTG 57.761 50.000 0.00 0.00 38.05 4.41
4686 9791 3.141398 CATTGTGGTATCGCCTATTGCT 58.859 45.455 0.00 0.00 38.05 3.91
4687 9792 2.878406 ACATTGTGGTATCGCCTATTGC 59.122 45.455 0.00 0.00 38.35 3.56
4688 9793 5.273170 CAAACATTGTGGTATCGCCTATTG 58.727 41.667 0.00 0.00 38.35 1.90
4689 9794 4.202010 GCAAACATTGTGGTATCGCCTATT 60.202 41.667 0.00 0.00 38.35 1.73
4690 9795 3.315191 GCAAACATTGTGGTATCGCCTAT 59.685 43.478 0.00 0.00 38.35 2.57
4691 9796 2.680841 GCAAACATTGTGGTATCGCCTA 59.319 45.455 0.00 0.00 38.35 3.93
4692 9797 1.472480 GCAAACATTGTGGTATCGCCT 59.528 47.619 0.00 0.00 38.35 5.52
4693 9798 1.472480 AGCAAACATTGTGGTATCGCC 59.528 47.619 0.00 0.00 37.90 5.54
4694 9799 2.477863 GGAGCAAACATTGTGGTATCGC 60.478 50.000 0.00 0.00 0.00 4.58
4695 9800 2.746904 TGGAGCAAACATTGTGGTATCG 59.253 45.455 0.00 0.00 0.00 2.92
4696 9801 3.428045 GCTGGAGCAAACATTGTGGTATC 60.428 47.826 0.00 0.00 41.59 2.24
4697 9802 2.493278 GCTGGAGCAAACATTGTGGTAT 59.507 45.455 0.00 0.00 41.59 2.73
4698 9803 1.885887 GCTGGAGCAAACATTGTGGTA 59.114 47.619 0.00 0.00 41.59 3.25
4699 9804 0.675633 GCTGGAGCAAACATTGTGGT 59.324 50.000 0.00 0.00 41.59 4.16
4700 9805 3.502237 GCTGGAGCAAACATTGTGG 57.498 52.632 0.00 0.00 41.59 4.17
4711 9816 4.479993 ATCCCACGCTGCTGGAGC 62.480 66.667 11.48 11.48 45.20 4.70
4712 9817 2.202987 GATCCCACGCTGCTGGAG 60.203 66.667 16.44 8.94 32.30 3.86
4713 9818 3.785859 GGATCCCACGCTGCTGGA 61.786 66.667 16.44 11.14 32.30 3.86
4714 9819 3.746949 GAGGATCCCACGCTGCTGG 62.747 68.421 8.55 10.11 0.00 4.85
4715 9820 2.202987 GAGGATCCCACGCTGCTG 60.203 66.667 8.55 0.00 0.00 4.41
4734 9839 0.969149 AGTCGTTGTGAGCTGGATCA 59.031 50.000 0.00 0.00 0.00 2.92
4742 9847 0.510359 GCAAGCTGAGTCGTTGTGAG 59.490 55.000 0.00 0.00 0.00 3.51
4770 9875 1.000396 AGCCATGGAGTTGGAAGCC 60.000 57.895 18.40 0.00 39.25 4.35
4780 9885 3.473647 CGCTGGGAGAGCCATGGA 61.474 66.667 18.40 0.00 46.01 3.41
4805 9910 4.992381 ACGTTGCTACTGAAGACAAATC 57.008 40.909 0.00 0.00 0.00 2.17
4814 9919 1.837538 GCGCCAAACGTTGCTACTGA 61.838 55.000 0.00 0.00 46.11 3.41
4817 9922 2.498887 CGCGCCAAACGTTGCTAC 60.499 61.111 0.00 0.00 46.11 3.58
4825 9930 3.894947 ACCACCAACGCGCCAAAC 61.895 61.111 5.73 0.00 0.00 2.93
4866 9971 1.476845 TAACTGAAGCTGGTCGGCCA 61.477 55.000 9.26 9.26 43.73 5.36
4872 9977 4.781934 AGTGTTTTCTAACTGAAGCTGGT 58.218 39.130 0.00 0.00 35.89 4.00
4877 9982 6.110411 TCCCCTAGTGTTTTCTAACTGAAG 57.890 41.667 0.00 0.00 35.89 3.02
4882 9987 6.803366 TCCTATCCCCTAGTGTTTTCTAAC 57.197 41.667 0.00 0.00 34.75 2.34
4885 9990 5.538877 TGATCCTATCCCCTAGTGTTTTCT 58.461 41.667 0.00 0.00 0.00 2.52
4911 10016 5.584649 TCATCCTAGTTGATTTGCCTAAACG 59.415 40.000 0.00 0.00 0.00 3.60
4933 10038 0.249120 CCCCGTGCAAGTACTGATCA 59.751 55.000 0.00 0.00 0.00 2.92
4937 10042 3.118454 CGCCCCGTGCAAGTACTG 61.118 66.667 0.00 0.00 41.33 2.74
4938 10043 3.584868 GACGCCCCGTGCAAGTACT 62.585 63.158 0.00 0.00 41.37 2.73
4954 10059 2.787680 GCGACGACATATACCAACAGAC 59.212 50.000 0.00 0.00 0.00 3.51
4965 14977 0.455464 CACGTTGGAGCGACGACATA 60.455 55.000 0.00 0.00 43.17 2.29
4982 14994 2.202730 GCGCTCCTCTGCTCTCAC 60.203 66.667 0.00 0.00 0.00 3.51
4983 14995 3.819920 CGCGCTCCTCTGCTCTCA 61.820 66.667 5.56 0.00 0.00 3.27
5022 15034 1.887854 GATCCCCTCTTCGGTAGTAGC 59.112 57.143 0.00 0.00 0.00 3.58
5023 15035 3.150767 CTGATCCCCTCTTCGGTAGTAG 58.849 54.545 0.00 0.00 0.00 2.57
5024 15036 2.781757 TCTGATCCCCTCTTCGGTAGTA 59.218 50.000 0.00 0.00 0.00 1.82
5025 15037 1.569548 TCTGATCCCCTCTTCGGTAGT 59.430 52.381 0.00 0.00 0.00 2.73
5026 15038 2.235016 CTCTGATCCCCTCTTCGGTAG 58.765 57.143 0.00 0.00 0.00 3.18
5027 15039 1.133450 CCTCTGATCCCCTCTTCGGTA 60.133 57.143 0.00 0.00 0.00 4.02
5028 15040 0.397816 CCTCTGATCCCCTCTTCGGT 60.398 60.000 0.00 0.00 0.00 4.69
5029 15041 0.105964 TCCTCTGATCCCCTCTTCGG 60.106 60.000 0.00 0.00 0.00 4.30
5032 15044 2.192263 GTGTTCCTCTGATCCCCTCTT 58.808 52.381 0.00 0.00 0.00 2.85
5037 15050 0.461961 CTCGGTGTTCCTCTGATCCC 59.538 60.000 0.00 0.00 0.00 3.85
5073 15086 1.212616 GATGTAGGACTGCATCGTGC 58.787 55.000 13.28 3.44 41.46 5.34
5085 15098 5.192927 TGCAAAAATGACCCTAGATGTAGG 58.807 41.667 9.01 9.01 45.25 3.18
5086 15099 6.757897 TTGCAAAAATGACCCTAGATGTAG 57.242 37.500 0.00 0.00 0.00 2.74
5087 15100 6.945435 TCTTTGCAAAAATGACCCTAGATGTA 59.055 34.615 13.84 0.00 0.00 2.29
5088 15101 5.774690 TCTTTGCAAAAATGACCCTAGATGT 59.225 36.000 13.84 0.00 0.00 3.06
5089 15102 6.271488 TCTTTGCAAAAATGACCCTAGATG 57.729 37.500 13.84 0.00 0.00 2.90
5090 15103 6.916360 TTCTTTGCAAAAATGACCCTAGAT 57.084 33.333 13.84 0.00 0.00 1.98
5091 15104 6.723298 TTTCTTTGCAAAAATGACCCTAGA 57.277 33.333 13.84 0.00 0.00 2.43
5092 15105 7.874528 AGAATTTCTTTGCAAAAATGACCCTAG 59.125 33.333 13.84 0.00 0.00 3.02
5093 15106 7.656948 CAGAATTTCTTTGCAAAAATGACCCTA 59.343 33.333 13.84 0.00 0.00 3.53
5094 15107 6.484308 CAGAATTTCTTTGCAAAAATGACCCT 59.516 34.615 13.84 2.95 0.00 4.34
5095 15108 6.482973 TCAGAATTTCTTTGCAAAAATGACCC 59.517 34.615 13.84 0.70 0.00 4.46
5096 15109 7.481275 TCAGAATTTCTTTGCAAAAATGACC 57.519 32.000 13.84 4.98 0.00 4.02
5097 15110 9.377383 CAATCAGAATTTCTTTGCAAAAATGAC 57.623 29.630 13.84 8.97 0.00 3.06
5098 15111 8.071368 GCAATCAGAATTTCTTTGCAAAAATGA 58.929 29.630 22.26 4.38 39.06 2.57
5099 15112 7.858382 TGCAATCAGAATTTCTTTGCAAAAATG 59.142 29.630 25.43 1.77 43.29 2.32
5100 15113 7.932335 TGCAATCAGAATTTCTTTGCAAAAAT 58.068 26.923 25.43 8.24 43.29 1.82
5101 15114 7.317842 TGCAATCAGAATTTCTTTGCAAAAA 57.682 28.000 25.43 6.04 43.29 1.94
5102 15115 6.922247 TGCAATCAGAATTTCTTTGCAAAA 57.078 29.167 25.43 11.03 43.29 2.44
5103 15116 6.072948 CCATGCAATCAGAATTTCTTTGCAAA 60.073 34.615 28.71 12.14 46.70 3.68
5104 15117 5.410132 CCATGCAATCAGAATTTCTTTGCAA 59.590 36.000 28.71 18.47 46.70 4.08
5106 15119 4.331717 CCCATGCAATCAGAATTTCTTTGC 59.668 41.667 21.14 21.14 39.45 3.68
5107 15120 4.331717 GCCCATGCAATCAGAATTTCTTTG 59.668 41.667 0.00 1.61 37.47 2.77
5108 15121 4.224370 AGCCCATGCAATCAGAATTTCTTT 59.776 37.500 0.00 0.00 41.13 2.52
5109 15122 3.773119 AGCCCATGCAATCAGAATTTCTT 59.227 39.130 0.00 0.00 41.13 2.52
5110 15123 3.371965 AGCCCATGCAATCAGAATTTCT 58.628 40.909 0.00 0.00 41.13 2.52
5111 15124 3.814005 AGCCCATGCAATCAGAATTTC 57.186 42.857 0.00 0.00 41.13 2.17
5112 15125 4.539726 TCTAGCCCATGCAATCAGAATTT 58.460 39.130 0.00 0.00 41.13 1.82
5113 15126 4.142790 CTCTAGCCCATGCAATCAGAATT 58.857 43.478 0.00 0.00 41.13 2.17
5114 15127 3.498121 CCTCTAGCCCATGCAATCAGAAT 60.498 47.826 0.00 0.00 41.13 2.40
5115 15128 2.158711 CCTCTAGCCCATGCAATCAGAA 60.159 50.000 0.00 0.00 41.13 3.02
5116 15129 1.419012 CCTCTAGCCCATGCAATCAGA 59.581 52.381 0.00 0.00 41.13 3.27
5117 15130 1.893544 CCTCTAGCCCATGCAATCAG 58.106 55.000 0.00 0.00 41.13 2.90
5118 15131 0.179009 GCCTCTAGCCCATGCAATCA 60.179 55.000 0.00 0.00 41.13 2.57
5119 15132 1.233285 CGCCTCTAGCCCATGCAATC 61.233 60.000 0.00 0.00 41.13 2.67
5120 15133 1.228063 CGCCTCTAGCCCATGCAAT 60.228 57.895 0.00 0.00 41.13 3.56
5121 15134 2.190313 CGCCTCTAGCCCATGCAA 59.810 61.111 0.00 0.00 41.13 4.08
5122 15135 2.763710 TCGCCTCTAGCCCATGCA 60.764 61.111 0.00 0.00 41.13 3.96
5123 15136 2.030262 CTCGCCTCTAGCCCATGC 59.970 66.667 0.00 0.00 38.78 4.06
5124 15137 2.030262 GCTCGCCTCTAGCCCATG 59.970 66.667 0.00 0.00 38.78 3.66
5125 15138 3.610669 CGCTCGCCTCTAGCCCAT 61.611 66.667 0.00 0.00 38.78 4.00
5127 15140 4.577246 CACGCTCGCCTCTAGCCC 62.577 72.222 0.00 0.00 38.78 5.19
5128 15141 2.395367 CTACACGCTCGCCTCTAGCC 62.395 65.000 0.00 0.00 38.78 3.93
5129 15142 1.009449 CTACACGCTCGCCTCTAGC 60.009 63.158 0.00 0.00 36.60 3.42
5130 15143 1.069568 CATCTACACGCTCGCCTCTAG 60.070 57.143 0.00 0.00 0.00 2.43
5131 15144 0.945099 CATCTACACGCTCGCCTCTA 59.055 55.000 0.00 0.00 0.00 2.43
5132 15145 1.032657 ACATCTACACGCTCGCCTCT 61.033 55.000 0.00 0.00 0.00 3.69
5133 15146 0.661552 TACATCTACACGCTCGCCTC 59.338 55.000 0.00 0.00 0.00 4.70
5134 15147 1.100510 TTACATCTACACGCTCGCCT 58.899 50.000 0.00 0.00 0.00 5.52
5135 15148 1.917273 TTTACATCTACACGCTCGCC 58.083 50.000 0.00 0.00 0.00 5.54
5136 15149 4.263800 CAAATTTACATCTACACGCTCGC 58.736 43.478 0.00 0.00 0.00 5.03
5137 15150 4.032900 AGCAAATTTACATCTACACGCTCG 59.967 41.667 0.00 0.00 0.00 5.03
5138 15151 5.258622 CAGCAAATTTACATCTACACGCTC 58.741 41.667 0.00 0.00 0.00 5.03
5139 15152 4.437390 GCAGCAAATTTACATCTACACGCT 60.437 41.667 0.00 0.00 0.00 5.07
5140 15153 3.786048 GCAGCAAATTTACATCTACACGC 59.214 43.478 0.00 0.00 0.00 5.34
5141 15154 4.968626 TGCAGCAAATTTACATCTACACG 58.031 39.130 0.00 0.00 0.00 4.49
5142 15155 7.816945 ATTTGCAGCAAATTTACATCTACAC 57.183 32.000 25.07 0.00 40.60 2.90
5154 15167 8.517062 AGTCTCTAGATTAATTTGCAGCAAAT 57.483 30.769 25.07 25.07 44.62 2.32
5155 15168 7.928307 AGTCTCTAGATTAATTTGCAGCAAA 57.072 32.000 22.71 22.71 37.75 3.68
5156 15169 7.826252 AGAAGTCTCTAGATTAATTTGCAGCAA 59.174 33.333 2.83 2.83 0.00 3.91
5157 15170 7.334090 AGAAGTCTCTAGATTAATTTGCAGCA 58.666 34.615 0.00 0.00 0.00 4.41
5158 15171 7.784633 AGAAGTCTCTAGATTAATTTGCAGC 57.215 36.000 0.00 0.00 0.00 5.25
5159 15172 9.598517 AGAAGAAGTCTCTAGATTAATTTGCAG 57.401 33.333 0.00 0.00 0.00 4.41
5194 15207 0.476771 AGAAGTCCCCTCCGCAAAAA 59.523 50.000 0.00 0.00 0.00 1.94
5195 15208 0.476771 AAGAAGTCCCCTCCGCAAAA 59.523 50.000 0.00 0.00 0.00 2.44
5196 15209 0.036306 GAAGAAGTCCCCTCCGCAAA 59.964 55.000 0.00 0.00 0.00 3.68
5197 15210 0.836400 AGAAGAAGTCCCCTCCGCAA 60.836 55.000 0.00 0.00 0.00 4.85
5198 15211 1.229209 AGAAGAAGTCCCCTCCGCA 60.229 57.895 0.00 0.00 0.00 5.69
5199 15212 1.258445 TGAGAAGAAGTCCCCTCCGC 61.258 60.000 0.00 0.00 0.00 5.54
5200 15213 0.533032 GTGAGAAGAAGTCCCCTCCG 59.467 60.000 0.00 0.00 0.00 4.63
5201 15214 1.828595 GAGTGAGAAGAAGTCCCCTCC 59.171 57.143 0.00 0.00 0.00 4.30
5202 15215 1.474879 CGAGTGAGAAGAAGTCCCCTC 59.525 57.143 0.00 0.00 0.00 4.30
5203 15216 1.075698 TCGAGTGAGAAGAAGTCCCCT 59.924 52.381 0.00 0.00 0.00 4.79
5204 15217 1.546961 TCGAGTGAGAAGAAGTCCCC 58.453 55.000 0.00 0.00 0.00 4.81
5205 15218 2.668834 CGTTCGAGTGAGAAGAAGTCCC 60.669 54.545 0.00 0.00 0.00 4.46
5206 15219 2.030981 ACGTTCGAGTGAGAAGAAGTCC 60.031 50.000 0.00 0.00 0.00 3.85
5224 15237 1.237285 GCAAGCAGGTTGATGGACGT 61.237 55.000 16.74 0.00 38.60 4.34
5231 15244 2.574006 AGAATGAGCAAGCAGGTTGA 57.426 45.000 16.74 0.00 38.60 3.18
5289 23800 6.386927 TCCAGAGATATTCTTTCCTAAAGGCA 59.613 38.462 0.00 0.00 39.01 4.75
5334 23846 1.816863 ATACCGACCGGCAGCTATGG 61.817 60.000 8.55 0.00 39.32 2.74
5336 23848 1.113517 ACATACCGACCGGCAGCTAT 61.114 55.000 8.55 0.00 39.32 2.97
5347 23859 1.473278 TCATGTGCACGTACATACCGA 59.527 47.619 12.10 0.00 39.17 4.69
5405 23918 4.563168 CCAGCCAATTCAATGCCAAAACTA 60.563 41.667 0.00 0.00 0.00 2.24
5452 23968 9.030301 CAACAACTTTCGAAAAGGTTTAATCAT 57.970 29.630 12.41 0.00 32.84 2.45
5460 23976 8.766000 ATTAAAACAACAACTTTCGAAAAGGT 57.234 26.923 12.41 4.48 0.00 3.50
5483 23999 9.965824 CATGGTTAATTAGCCGAAAGATTAATT 57.034 29.630 13.04 0.00 35.31 1.40
5537 24053 1.668751 GCATGCAAATGCCATTGAAGG 59.331 47.619 14.21 0.00 41.47 3.46
5707 24223 4.752101 ACAACAACAATCTCAGACTAGCAC 59.248 41.667 0.00 0.00 0.00 4.40
5738 24254 1.802960 GCATCATGGCTGTATCGAAGG 59.197 52.381 0.00 0.00 0.00 3.46
5863 30747 5.704053 TCGGAAAAGAATCTCACCCTAAAAC 59.296 40.000 0.00 0.00 0.00 2.43
5885 30769 6.021596 GTGCCAGTAAAACAACTTCATATCG 58.978 40.000 0.00 0.00 0.00 2.92
5984 30868 1.774639 GCGCAAGGCATGATTAATGG 58.225 50.000 0.30 0.00 42.87 3.16
6097 30985 1.949847 ATGAAGTCTGGCTCGACGGG 61.950 60.000 0.00 0.00 38.90 5.28
6155 31043 3.719268 ACAAGTATGCCTCAATGGACA 57.281 42.857 0.00 0.00 38.35 4.02
6192 31080 3.819564 AACAGATACGCAATGGAGCTA 57.180 42.857 0.00 0.00 0.00 3.32
6207 31095 6.172630 TGCACTTATTCTATGCTGAAACAGA 58.827 36.000 2.81 0.00 40.13 3.41
6304 31192 5.047943 TCAAAACAGAAAACGGAAACTGGAA 60.048 36.000 0.00 0.00 35.08 3.53
6336 31225 1.183030 TAGTGCCATACCGATCGGGG 61.183 60.000 35.87 27.52 41.60 5.73
6469 31359 4.093850 GGTATATTTTGTGCCGTCGAACTT 59.906 41.667 0.00 0.00 0.00 2.66
6544 31436 2.626840 TGTCATTGCCGAATCGATTGA 58.373 42.857 16.96 2.13 0.00 2.57
6545 31437 3.614159 ATGTCATTGCCGAATCGATTG 57.386 42.857 16.96 7.91 0.00 2.67
6546 31438 4.353737 CAAATGTCATTGCCGAATCGATT 58.646 39.130 11.20 11.20 0.00 3.34
6594 31486 4.243008 TCGACCACCAAGGCGCAA 62.243 61.111 10.83 0.00 43.14 4.85
6625 31517 3.457263 TCCGACATAGCCGCAGCA 61.457 61.111 0.00 0.00 43.56 4.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.